AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62494

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62494.t1 MTR_2g064310 97.765 358 8 0 1 358 1 358 0.0 712
MS.gene62494.t1 MTR_3g081640 61.732 358 121 6 11 358 10 361 2.71e-151 431
MS.gene62494.t1 MTR_3g081580 60.845 355 126 5 11 358 10 358 9.28e-146 416
MS.gene62494.t1 MTR_3g082050 59.538 346 131 4 15 358 11 349 5.27e-143 409
MS.gene62494.t1 MTR_3g082050 59.195 348 133 4 13 358 37 377 8.86e-141 404
MS.gene62494.t1 MTR_3g082050 62.813 320 113 3 41 358 57 372 2.99e-140 403
MS.gene62494.t1 MTR_3g081690 57.798 327 129 4 15 339 11 330 1.08e-127 370
MS.gene62494.t1 MTR_3g081690 61.130 301 111 3 41 339 57 353 5.17e-125 364
MS.gene62494.t1 MTR_4g083570 48.696 345 170 3 15 358 12 350 4.60e-116 340
MS.gene62494.t1 MTR_8g105030 48.169 355 155 7 11 352 9 347 1.44e-108 323
MS.gene62494.t1 MTR_6g007687 48.138 349 172 3 7 355 5 344 1.94e-106 316
MS.gene62494.t1 MTR_3g104400 44.904 363 164 4 30 358 5 365 5.28e-101 303
MS.gene62494.t1 MTR_1g016120 44.353 363 167 7 30 358 13 374 8.60e-95 287
MS.gene62494.t1 MTR_5g071990 39.583 336 177 6 28 358 4 318 2.26e-77 241
MS.gene62494.t1 MTR_3g081690 56.087 230 92 4 115 339 14 239 1.36e-76 236
MS.gene62494.t1 MTR_3g081690 66.460 161 47 1 196 356 52 205 4.57e-69 216
MS.gene62494.t1 MTR_3g081690 70.833 144 42 0 196 339 74 217 2.64e-68 214
MS.gene62494.t1 MTR_3g081630 56.164 73 30 2 84 155 23 94 9.35e-18 79.3
MS.gene62494.t1 MTR_4g006710 49.351 77 38 1 52 128 38 113 2.97e-16 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62494.t1 AT3G12750 58.953 363 126 7 4 358 8 355 2.97e-146 417
MS.gene62494.t1 AT1G05300 54.971 342 142 4 24 358 24 360 8.37e-127 368
MS.gene62494.t1 AT2G32270 53.963 328 127 3 31 358 36 339 4.67e-119 348
MS.gene62494.t1 AT5G62160 49.861 361 171 5 2 358 1 355 1.83e-110 327
MS.gene62494.t1 AT1G31260 47.522 343 175 2 20 358 23 364 2.60e-110 327
MS.gene62494.t1 AT4G19690 44.915 354 181 2 5 358 8 347 3.25e-100 300
MS.gene62494.t1 AT2G04032 42.897 359 197 3 5 358 10 365 1.15e-97 294
MS.gene62494.t1 AT4G19680 46.341 328 170 4 31 358 29 350 1.36e-97 293
MS.gene62494.t1 AT1G10970 43.288 365 170 3 31 358 10 374 4.65e-95 288
MS.gene62494.t1 AT1G10970 43.288 365 170 3 31 358 10 374 4.65e-95 288
MS.gene62494.t1 AT1G60960 41.579 380 170 4 31 358 36 415 1.44e-90 278
MS.gene62494.t1 AT1G60960 41.579 380 170 4 31 358 46 425 1.77e-90 278
MS.gene62494.t1 AT4G33020 38.734 395 193 9 9 358 1 391 6.72e-85 262
MS.gene62494.t1 AT4G33020 41.379 348 158 8 53 358 1 344 1.71e-82 254
MS.gene62494.t1 AT1G05300 50.207 241 108 4 24 257 24 259 3.38e-74 231
MS.gene62494.t1 AT2G30080 39.710 345 188 8 28 358 3 341 1.15e-72 229
MS.gene62494.t1 AT4G19680 41.245 257 142 5 3 259 4 251 2.60e-59 192
MS.gene62494.t1 AT4G19690 40.541 148 88 0 5 152 8 155 1.07e-31 119
MS.gene62494.t1 AT1G60960 39.344 122 74 0 31 152 46 167 5.27e-26 106

Find 69 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAATATTTGCTCCTATT+TGG 0.164008 2.1:-31346784 None:intergenic
CTTCGCGGCCGGTGTAATTT+TGG 0.178168 2.1:+31344371 MS.gene62494:CDS
CCTAATTAATTCAGGTGATA+TGG 0.183100 2.1:-31344688 None:intergenic
GGCCACTAGGAGAGGCTTTA+TGG 0.212975 2.1:-31345058 None:intergenic
ATAAGAAAATAAAAGCTTTA+AGG 0.213779 2.1:-31344130 None:intergenic
CCATATCACCTGAATTAATT+AGG 0.223925 2.1:+31344688 MS.gene62494:CDS
GTGATTATTGGAATATCTTT+AGG 0.251826 2.1:+31345015 MS.gene62494:CDS
GCATGTCCTTGTTGGCTAAA+TGG 0.255419 2.1:+31346825 MS.gene62494:CDS
ATCCTTTGCCTAATTAATTC+AGG 0.256019 2.1:-31344696 None:intergenic
GTCTAGGTCCACAGCAATTA+TGG 0.281046 2.1:+31346559 MS.gene62494:CDS
CTATCCCAATTGGTGTTGTT+AGG 0.295394 2.1:-31346595 None:intergenic
TCTGCTGGAACTTGTTTAGA+AGG 0.303586 2.1:-31344570 None:intergenic
TGTGGACCTAGACTCAAATT+TGG 0.329474 2.1:-31346549 None:intergenic
TTCTCCCTAACAACACCAAT+TGG 0.338474 2.1:+31346590 MS.gene62494:CDS
CATGTCCTTGTTGGCTAAAT+GGG 0.342112 2.1:+31346826 MS.gene62494:CDS
TTTGAATTCACCTTGTCTTA+AGG 0.344478 2.1:+31344434 MS.gene62494:CDS
AACAATTTCAAGATCCAAAT+AGG 0.351306 2.1:+31346770 MS.gene62494:CDS
GTCCTTGTTTGTGGTGCTCT+TGG 0.359872 2.1:+31344273 MS.gene62494:CDS
ATTGCTTCTGTCCTTGTTTG+TGG 0.360374 2.1:+31344264 MS.gene62494:CDS
ACACCAATTGGGATAGCAAT+TGG 0.365479 2.1:+31346602 MS.gene62494:CDS
GTTCCAGCAGATGAAGAAAT+AGG 0.370231 2.1:+31344582 MS.gene62494:CDS
GTCTTCTATAGCAACTTTGA+TGG 0.381420 2.1:+31344503 MS.gene62494:CDS
TTCAGGTTGCATGTCCTTGT+TGG 0.384055 2.1:+31346817 MS.gene62494:CDS
GTGGTCCATTCAGTGATTAT+TGG 0.385147 2.1:+31345003 MS.gene62494:CDS
TTTGAGGGAATGGGGCTTGG+TGG 0.391061 2.1:+31345099 MS.gene62494:CDS
TTGAACCAAGTTTGTAATGA+AGG 0.424018 2.1:-31344242 None:intergenic
CGGAAGTATGTGAATAAAAC+CGG 0.425664 2.1:-31344397 None:intergenic
AGCTGGAATCTTGATTTACA+TGG 0.436582 2.1:+31346700 MS.gene62494:CDS
CCAACATCTCTAATTGTTGA+AGG 0.439198 2.1:+31346659 MS.gene62494:CDS
GCTTGGTGGCTGCATATCTC+AGG 0.439946 2.1:+31345113 MS.gene62494:CDS
GAAGCCCTTCATTACAAACT+TGG 0.440871 2.1:+31344237 MS.gene62494:CDS
TCACCTATTTCTTCATCTGC+TGG 0.441100 2.1:-31344585 None:intergenic
TATCCCAATTGGTGTTGTTA+GGG 0.445987 2.1:-31346594 None:intergenic
ATCCCAATTGCTATCCCAAT+TGG 0.451924 2.1:-31346605 None:intergenic
CACCAATTGGGATAGCAATT+GGG 0.462103 2.1:+31346603 MS.gene62494:CDS
CTTCAACAATTAGAGATGTT+GGG 0.470274 2.1:-31346658 None:intergenic
TTCAAACTCTCAAATGCATC+CGG 0.473075 2.1:-31344417 None:intergenic
CCTTCAACAATTAGAGATGT+TGG 0.477232 2.1:-31346659 None:intergenic
GTGTATCAGGTATTGGAGCT+AGG 0.482364 2.1:+31344976 MS.gene62494:intron
ATGATTAAAGCCTTCGCGGC+CGG 0.485121 2.1:+31344360 MS.gene62494:CDS
TGAACCAAGTTTGTAATGAA+GGG 0.486936 2.1:-31344241 None:intergenic
TCTCCCTAACAACACCAATT+GGG 0.487085 2.1:+31346591 MS.gene62494:CDS
CAAAATTACACCGGCCGCGA+AGG 0.490438 2.1:-31344370 None:intergenic
GAATCGCATGAAACAAGAGT+TGG 0.514536 2.1:-31344168 None:intergenic
GCCACACATGGTCATGCTCA+TGG 0.524602 2.1:+31344642 MS.gene62494:CDS
GGTATTGGAGCTAGGAATAG+TGG 0.526265 2.1:+31344984 MS.gene62494:intron
TTTCATGATTAAAGCCTTCG+CGG 0.533059 2.1:+31344356 MS.gene62494:CDS
AATCGCATGAAACAAGAGTT+GGG 0.534049 2.1:-31344167 None:intergenic
ATATTCCAATAATCACTGAA+TGG 0.557063 2.1:-31345008 None:intergenic
TGCAGGCCAAATTTGAGTCT+AGG 0.558044 2.1:+31346543 MS.gene62494:intron
TCATAAAATCAGCTGCAAGT+AGG 0.577409 2.1:-31346733 None:intergenic
CACCTGAATTAATTAGGCAA+AGG 0.578421 2.1:+31344694 MS.gene62494:CDS
GATGGAAAGACAAGGCCACT+AGG 0.600701 2.1:-31345071 None:intergenic
AATTGGGATAGCAATTGGGA+TGG 0.606135 2.1:+31346607 MS.gene62494:CDS
AAAGACAAGGCCACTAGGAG+AGG 0.616440 2.1:-31345066 None:intergenic
CACCAAGAGCACCACAAACA+AGG 0.617962 2.1:-31344275 None:intergenic
ATAGCAACAAGTCCAGCAAG+TGG 0.627097 2.1:-31344477 None:intergenic
ATTGGGATAGCAATTGGGAT+GGG 0.627940 2.1:+31346608 MS.gene62494:CDS
GTTCATACACATGCCACACA+TGG 0.634479 2.1:+31344630 MS.gene62494:CDS
TGATATGGAATCTTGAGAAG+AGG 0.635195 2.1:-31344673 None:intergenic
AAATGTTGCCATAATTGCTG+TGG 0.645802 2.1:-31346567 None:intergenic
ACCGGTTGCCAAAATTACAC+CGG 0.652557 2.1:-31344379 None:intergenic
GAAATAGGTGATGATCATGT+TGG 0.666063 2.1:+31344597 MS.gene62494:CDS
TACCATAAAGCCTCTCCTAG+TGG 0.667478 2.1:+31345056 MS.gene62494:CDS
TGTGAAACTGAACAAACCAA+AGG 0.668514 2.1:+31344198 MS.gene62494:CDS
GCAAGTGGAAAATCACCCCA+AGG 0.669491 2.1:-31344462 None:intergenic
TTATGCCCATTTAGCCAACA+AGG 0.682180 2.1:-31346831 None:intergenic
TCCATGAGCATGACCATGTG+TGG 0.697142 2.1:-31344643 None:intergenic
CGCATGAAACAAGAGTTGGG+AGG 0.742798 2.1:-31344164 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTTGGTAAAATAAAAT+TGG - chr2.1:31345285-31345304 None:intergenic 10.0%
!!! TTTTTTGTAAAAAAAAAATG+TGG + chr2.1:31345770-31345789 MS.gene62494:intron 10.0%
!! AACAATTTAAATTCAGATTT+AGG + chr2.1:31345202-31345221 MS.gene62494:intron 15.0%
!! ATAAGAAAATAAAAGCTTTA+AGG - chr2.1:31344133-31344152 None:intergenic 15.0%
!! TGAAAGTAAAAGAAATAAAT+TGG - chr2.1:31345389-31345408 None:intergenic 15.0%
!! TTGCAAAATTAAATCATATA+AGG + chr2.1:31345440-31345459 MS.gene62494:intron 15.0%
!!! AATCTAAATTCTTTTTTTAG+TGG + chr2.1:31345348-31345367 MS.gene62494:intron 15.0%
!!! ATGAAAAATATGTCATTTTT+AGG - chr2.1:31344342-31344361 None:intergenic 15.0%
!!! TGAAAAATATGTCATTTTTA+GGG - chr2.1:31344341-31344360 None:intergenic 15.0%
!! AAAAAAAATAACCATGTGAT+TGG + chr2.1:31346269-31346288 MS.gene62494:intron 20.0%
!! AACCAAATTGAATATTAATC+GGG - chr2.1:31344949-31344968 None:intergenic 20.0%
!! AAGAAACCAATATTATATGT+CGG - chr2.1:31346144-31346163 None:intergenic 20.0%
!! AATAACGATTACGTAATTAT+TGG - chr2.1:31344857-31344876 None:intergenic 20.0%
!! AATTATAACATATTATGTGC+AGG + chr2.1:31346526-31346545 MS.gene62494:intron 20.0%
!! ACAATTTGGACTATAATATT+TGG - chr2.1:31345299-31345318 None:intergenic 20.0%
!! ACTTTCATTTGTAAATAAGT+CGG - chr2.1:31345936-31345955 None:intergenic 20.0%
!! AGTAAAAGAAATAAATTGGA+AGG - chr2.1:31345385-31345404 None:intergenic 20.0%
!! CTCAAGTAATTAATAAGTTT+CGG - chr2.1:31344886-31344905 None:intergenic 20.0%
!! GAACCAAATTGAATATTAAT+CGG - chr2.1:31344950-31344969 None:intergenic 20.0%
!! GTAAAAGAAATAAATTGGAA+GGG - chr2.1:31345384-31345403 None:intergenic 20.0%
!! TAATCATTTAAGTAAAGTCT+CGG - chr2.1:31346414-31346433 None:intergenic 20.0%
!! TATAGTTAAACTTCCTAAAA+TGG + chr2.1:31345488-31345507 MS.gene62494:intron 20.0%
!! TTAGATAAAAAACACTAACT+CGG + chr2.1:31346099-31346118 MS.gene62494:intron 20.0%
!!! ATATCTAACTTTAGAACTAT+TGG - chr2.1:31345711-31345730 None:intergenic 20.0%
!!! ATTTTTTTCACTATTTCCTT+TGG - chr2.1:31344217-31344236 None:intergenic 20.0%
!!! TAAATAATGAACAAGTCTTT+TGG - chr2.1:31344909-31344928 None:intergenic 20.0%
! AAAAAATTGATGGAAAGACA+AGG - chr2.1:31345082-31345101 None:intergenic 25.0%
! AACAATTTCAAGATCCAAAT+AGG + chr2.1:31346770-31346789 MS.gene62494:CDS 25.0%
! AATCATTTAAGTAAAGTCTC+GGG - chr2.1:31346413-31346432 None:intergenic 25.0%
! ATATTCCAATAATCACTGAA+TGG - chr2.1:31345011-31345030 None:intergenic 25.0%
! CTTTCATTTGTAAATAAGTC+GGG - chr2.1:31345935-31345954 None:intergenic 25.0%
! GTGATTATTGGAATATCTTT+AGG + chr2.1:31345015-31345034 MS.gene62494:CDS 25.0%
! TAAAACCTTATAAACTGTGT+CGG - chr2.1:31345907-31345926 None:intergenic 25.0%
! TACCCGATTAATATTCAATT+TGG + chr2.1:31344944-31344963 MS.gene62494:intron 25.0%
! TGATTCTACATTTATTAGAG+AGG + chr2.1:31346242-31346261 MS.gene62494:intron 25.0%
!! ACTTGAAACTTTTCCATTTT+AGG - chr2.1:31345504-31345523 None:intergenic 25.0%
!! AGATATTGTCTTTTGTGTTA+AGG - chr2.1:31345839-31345858 None:intergenic 25.0%
!! GCAAATATTTCACTTCTTTT+AGG + chr2.1:31346794-31346813 MS.gene62494:CDS 25.0%
!!! ATTGTTTCTAAGAGTCAATT+AGG - chr2.1:31345798-31345817 None:intergenic 25.0%
!!! TCTTTCCATCAATTTTTTGA+GGG + chr2.1:31345084-31345103 MS.gene62494:CDS 25.0%
!!! TGTTAGCTTTTAGTAAATAC+TGG - chr2.1:31346480-31346499 None:intergenic 25.0%
ATCCTTTGCCTAATTAATTC+AGG - chr2.1:31344699-31344718 None:intergenic 30.0%
ATTAATTATCGGCAAAGTAG+AGG - chr2.1:31346305-31346324 None:intergenic 30.0%
CAATAAGGCAATTGACAATT+TGG - chr2.1:31345313-31345332 None:intergenic 30.0%
CCATATCACCTGAATTAATT+AGG + chr2.1:31344688-31344707 MS.gene62494:CDS 30.0%
CCTAATTAATTCAGGTGATA+TGG - chr2.1:31344691-31344710 None:intergenic 30.0%
CTCTTACGGAGATTAATTAT+CGG - chr2.1:31346316-31346335 None:intergenic 30.0%
CTTCAACAATTAGAGATGTT+GGG - chr2.1:31346661-31346680 None:intergenic 30.0%
GTATTGTAGATGAAAAAGTG+TGG - chr2.1:31346385-31346404 None:intergenic 30.0%
GTGAAATATTTGCTCCTATT+TGG - chr2.1:31346787-31346806 None:intergenic 30.0%
TAAGGACTAATATGTCATCA+TGG - chr2.1:31345821-31345840 None:intergenic 30.0%
TAGAACTATTGGACTCATAT+AGG - chr2.1:31345700-31345719 None:intergenic 30.0%
TGAACCAAGTTTGTAATGAA+GGG - chr2.1:31344244-31344263 None:intergenic 30.0%
TTAATTATCGGCAAAGTAGA+GGG - chr2.1:31346304-31346323 None:intergenic 30.0%
TTGAACCAAGTTTGTAATGA+AGG - chr2.1:31344245-31344264 None:intergenic 30.0%
TTGTCTTAAGGAAAAACCTT+GGG + chr2.1:31344446-31344465 MS.gene62494:CDS 30.0%
TTTGAATTCACCTTGTCTTA+AGG + chr2.1:31344434-31344453 MS.gene62494:CDS 30.0%
! CTATTTTGTGTATCAGGTAT+TGG + chr2.1:31344969-31344988 MS.gene62494:intron 30.0%
! GGAATTCTTTTGCTCAATAA+TGG - chr2.1:31344309-31344328 None:intergenic 30.0%
! TCAATTCACTAGTGACTTTT+AGG - chr2.1:31345664-31345683 None:intergenic 30.0%
!! GATTTAATTTTGCAACAACG+AGG - chr2.1:31345435-31345454 None:intergenic 30.0%
!! GTTAATTTGTACTACTGAGT+AGG - chr2.1:31345611-31345630 None:intergenic 30.0%
!! TTCTTTTGCTCAATAATGGA+AGG - chr2.1:31344305-31344324 None:intergenic 30.0%
!! TTGAAATTGTTTTGCATCCT+TGG - chr2.1:31346761-31346780 None:intergenic 30.0%
!!! ATCAATTTTTTGAGGGAATG+GGG + chr2.1:31345091-31345110 MS.gene62494:CDS 30.0%
!!! ATTTCACTTCTTTTAGGTTC+AGG + chr2.1:31346800-31346819 MS.gene62494:CDS 30.0%
!!! CATCAATTTTTTGAGGGAAT+GGG + chr2.1:31345090-31345109 MS.gene62494:CDS 30.0%
!!! GTCTTTCCATCAATTTTTTG+AGG + chr2.1:31345083-31345102 MS.gene62494:CDS 30.0%
!!! TCATTTTTAGGGCTTAGAAT+TGG - chr2.1:31344330-31344349 None:intergenic 30.0%
!!! TTACGGAGTCTTTATTTTCA+TGG - chr2.1:31344800-31344819 None:intergenic 30.0%
!!! TTGGTTCTATTTTGTGTATC+AGG + chr2.1:31344963-31344982 MS.gene62494:intron 30.0%
AAATGTTGCCATAATTGCTG+TGG - chr2.1:31346570-31346589 None:intergenic 35.0%
AACTCGGAGTGTATTGTATA+TGG + chr2.1:31346115-31346134 MS.gene62494:intron 35.0%
AATCGCATGAAACAAGAGTT+GGG - chr2.1:31344170-31344189 None:intergenic 35.0%
AATTTGTACTACTGAGTAGG+AGG - chr2.1:31345608-31345627 None:intergenic 35.0%
ACTATTGCAGTTTGGAAAGT+AGG + chr2.1:31345553-31345572 MS.gene62494:intron 35.0%
AGCTGGAATCTTGATTTACA+TGG + chr2.1:31346700-31346719 MS.gene62494:CDS 35.0%
CAATATTACATTAGTCCGAG+AGG - chr2.1:31346447-31346466 None:intergenic 35.0%
CACCTGAATTAATTAGGCAA+AGG + chr2.1:31344694-31344713 MS.gene62494:CDS 35.0%
CCAACATCTCTAATTGTTGA+AGG + chr2.1:31346659-31346678 MS.gene62494:CDS 35.0%
CCATTCCCTCAAAAAATTGA+TGG - chr2.1:31345092-31345111 None:intergenic 35.0%
CCTTCAACAATTAGAGATGT+TGG - chr2.1:31346662-31346681 None:intergenic 35.0%
CTATGCTTTCTCACACAATA+AGG - chr2.1:31345328-31345347 None:intergenic 35.0%
CTCTCGGACTAATGTAATAT+TGG + chr2.1:31346445-31346464 MS.gene62494:intron 35.0%
CTTAAATTTCAACCGAGCTT+TGG - chr2.1:31344824-31344843 None:intergenic 35.0%
CTTGTCTTAAGGAAAAACCT+TGG + chr2.1:31344445-31344464 MS.gene62494:CDS 35.0%
GAAATAGGTGATGATCATGT+TGG + chr2.1:31344597-31344616 MS.gene62494:CDS 35.0%
GTCTTCTATAGCAACTTTGA+TGG + chr2.1:31344503-31344522 MS.gene62494:CDS 35.0%
TCATAAAATCAGCTGCAAGT+AGG - chr2.1:31346736-31346755 None:intergenic 35.0%
TGATATGGAATCTTGAGAAG+AGG - chr2.1:31344676-31344695 None:intergenic 35.0%
TGGATGTTACTATTGCAGTT+TGG + chr2.1:31345545-31345564 MS.gene62494:intron 35.0%
TGGTGTCCGACATATAATAT+TGG + chr2.1:31346135-31346154 MS.gene62494:intron 35.0%
TGTCTTAAGGAAAAACCTTG+GGG + chr2.1:31344447-31344466 MS.gene62494:CDS 35.0%
TGTGAAACTGAACAAACCAA+AGG + chr2.1:31344198-31344217 MS.gene62494:CDS 35.0%
TTAATCTCCGTAAGAGATCT+TGG + chr2.1:31346320-31346339 MS.gene62494:intron 35.0%
TTCAAACTCTCAAATGCATC+CGG - chr2.1:31344420-31344439 None:intergenic 35.0%
TTTAGGTCTTTCTCTCTTCA+TGG - chr2.1:31345647-31345666 None:intergenic 35.0%
TTTCATGATTAAAGCCTTCG+CGG + chr2.1:31344356-31344375 MS.gene62494:CDS 35.0%
! CAAGGTTTTTCCTTAAGACA+AGG - chr2.1:31344447-31344466 None:intergenic 35.0%
! CGGAAGTATGTGAATAAAAC+CGG - chr2.1:31344400-31344419 None:intergenic 35.0%
! GATTAGAGTTTAGTTCCTCT+CGG + chr2.1:31346429-31346448 MS.gene62494:intron 35.0%
!! TAACCATTGACCACTTTTAG+TGG + chr2.1:31346344-31346363 MS.gene62494:intron 35.0%
!! TATCCCAATTGGTGTTGTTA+GGG - chr2.1:31346597-31346616 None:intergenic 35.0%
!!! CCATCAATTTTTTGAGGGAA+TGG + chr2.1:31345089-31345108 MS.gene62494:CDS 35.0%
!!! CGGTTTTATTCACATACTTC+CGG + chr2.1:31344398-31344417 MS.gene62494:CDS 35.0%
AAGACAGACTCCACTAAAAG+TGG - chr2.1:31346357-31346376 None:intergenic 40.0%
AATTGGGATAGCAATTGGGA+TGG + chr2.1:31346607-31346626 MS.gene62494:CDS 40.0%
ACACCAATTGGGATAGCAAT+TGG + chr2.1:31346602-31346621 MS.gene62494:CDS 40.0%
ACTCCACTAAAAGTGGTCAA+TGG - chr2.1:31346350-31346369 None:intergenic 40.0%
ATCCCAATTGCTATCCCAAT+TGG - chr2.1:31346608-31346627 None:intergenic 40.0%
ATTGGGATAGCAATTGGGAT+GGG + chr2.1:31346608-31346627 MS.gene62494:CDS 40.0%
CAAGAAAAGTGAGTTGCATG+TGG + chr2.1:31345525-31345544 MS.gene62494:intron 40.0%
CACCAATTGGGATAGCAATT+GGG + chr2.1:31346603-31346622 MS.gene62494:CDS 40.0%
CATAGTCACACAATTTGAGC+AGG + chr2.1:31345166-31345185 MS.gene62494:intron 40.0%
GAAGCCCTTCATTACAAACT+TGG + chr2.1:31344237-31344256 MS.gene62494:CDS 40.0%
GAATCGCATGAAACAAGAGT+TGG - chr2.1:31344171-31344190 None:intergenic 40.0%
GTGGTCCATTCAGTGATTAT+TGG + chr2.1:31345003-31345022 MS.gene62494:CDS 40.0%
GTTCCAGCAGATGAAGAAAT+AGG + chr2.1:31344582-31344601 MS.gene62494:CDS 40.0%
TCTCCCTAACAACACCAATT+GGG + chr2.1:31346591-31346610 MS.gene62494:CDS 40.0%
TGTGGACCTAGACTCAAATT+TGG - chr2.1:31346552-31346571 None:intergenic 40.0%
TTATGCCCATTTAGCCAACA+AGG - chr2.1:31346834-31346853 None:intergenic 40.0%
TTCTCCCTAACAACACCAAT+TGG + chr2.1:31346590-31346609 MS.gene62494:CDS 40.0%
! ATTGCTTCTGTCCTTGTTTG+TGG + chr2.1:31344264-31344283 MS.gene62494:CDS 40.0%
! CATGTCCTTGTTGGCTAAAT+GGG + chr2.1:31346826-31346845 MS.gene62494:CDS 40.0%
! GTTTTCAATTCTGCTTCAGC+TGG + chr2.1:31346683-31346702 MS.gene62494:CDS 40.0%
! TCACCTATTTCTTCATCTGC+TGG - chr2.1:31344588-31344607 None:intergenic 40.0%
! TCTGCTGGAACTTGTTTAGA+AGG - chr2.1:31344573-31344592 None:intergenic 40.0%
! TGGTTAGCCAAGATCTCTTA+CGG - chr2.1:31346330-31346349 None:intergenic 40.0%
!! CAGCTGATTTTATGAGTCCA+AGG + chr2.1:31346741-31346760 MS.gene62494:CDS 40.0%
!! CTATCCCAATTGGTGTTGTT+AGG - chr2.1:31346598-31346617 None:intergenic 40.0%
!! TTCAACCGAGCTTTGGATTA+CGG - chr2.1:31344817-31344836 None:intergenic 40.0%
ACCGGTTGCCAAAATTACAC+CGG - chr2.1:31344382-31344401 None:intergenic 45.0%
AGACTCCGTAATCCAAAGCT+CGG + chr2.1:31344809-31344828 MS.gene62494:intron 45.0%
ATAGCAACAAGTCCAGCAAG+TGG - chr2.1:31344480-31344499 None:intergenic 45.0%
GACAGCCGACACAGTTTATA+AGG + chr2.1:31345899-31345918 MS.gene62494:intron 45.0%
GGTACTTCACACCAATCACA+TGG - chr2.1:31346283-31346302 None:intergenic 45.0%
GTAGGAGGATGTCGTCATAA+TGG - chr2.1:31345593-31345612 None:intergenic 45.0%
GTCTAGGTCCACAGCAATTA+TGG + chr2.1:31346559-31346578 MS.gene62494:CDS 45.0%
GTTCATACACATGCCACACA+TGG + chr2.1:31344630-31344649 MS.gene62494:CDS 45.0%
TACCATAAAGCCTCTCCTAG+TGG + chr2.1:31345056-31345075 MS.gene62494:CDS 45.0%
TGCAGGCCAAATTTGAGTCT+AGG + chr2.1:31346543-31346562 MS.gene62494:intron 45.0%
! GCATGTCCTTGTTGGCTAAA+TGG + chr2.1:31346825-31346844 MS.gene62494:CDS 45.0%
! GGTATTGGAGCTAGGAATAG+TGG + chr2.1:31344984-31345003 MS.gene62494:intron 45.0%
!! GTGTATCAGGTATTGGAGCT+AGG + chr2.1:31344976-31344995 MS.gene62494:intron 45.0%
!! TATAAACTGTGTCGGCTGTC+AGG - chr2.1:31345899-31345918 None:intergenic 45.0%
!! TTCAGGTTGCATGTCCTTGT+TGG + chr2.1:31346817-31346836 MS.gene62494:CDS 45.0%
!!! TTTTTTGAGGGAATGGGGCT+TGG + chr2.1:31345096-31345115 MS.gene62494:CDS 45.0%
!! ATTAAAAATATTATTACATT+CGG - chr2.1:31346063-31346082 None:intergenic 5.0%
AAAGACAAGGCCACTAGGAG+AGG - chr2.1:31345069-31345088 None:intergenic 50.0%
ATGATTAAAGCCTTCGCGGC+CGG + chr2.1:31344360-31344379 MS.gene62494:CDS 50.0%
CGCATGAAACAAGAGTTGGG+AGG - chr2.1:31344167-31344186 None:intergenic 50.0%
GATGGAAAGACAAGGCCACT+AGG - chr2.1:31345074-31345093 None:intergenic 50.0%
GCAAGTGGAAAATCACCCCA+AGG - chr2.1:31344465-31344484 None:intergenic 50.0%
TCCATGAGCATGACCATGTG+TGG - chr2.1:31344646-31344665 None:intergenic 50.0%
! GTCCTTGTTTGTGGTGCTCT+TGG + chr2.1:31344273-31344292 MS.gene62494:CDS 50.0%
! TGGGGTGATTTTCCACTTGC+TGG + chr2.1:31344465-31344484 MS.gene62494:CDS 50.0%
!! CACCAAGAGCACCACAAACA+AGG - chr2.1:31344278-31344297 None:intergenic 50.0%
!! GCCGGTGTAATTTTGGCAAC+CGG + chr2.1:31344378-31344397 MS.gene62494:CDS 50.0%
CAAAATTACACCGGCCGCGA+AGG - chr2.1:31344373-31344392 None:intergenic 55.0%
GCCACACATGGTCATGCTCA+TGG + chr2.1:31344642-31344661 MS.gene62494:CDS 55.0%
GGCCACTAGGAGAGGCTTTA+TGG - chr2.1:31345061-31345080 None:intergenic 55.0%
TTTGAGGGAATGGGGCTTGG+TGG + chr2.1:31345099-31345118 MS.gene62494:CDS 55.0%
! CTTCGCGGCCGGTGTAATTT+TGG + chr2.1:31344371-31344390 MS.gene62494:CDS 55.0%
! GCTTGGTGGCTGCATATCTC+AGG + chr2.1:31345113-31345132 MS.gene62494:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 31344108 31346853 31344108 ID=MS.gene62494
chr2.1 mRNA 31344108 31346853 31344108 ID=MS.gene62494.t1;Parent=MS.gene62494
chr2.1 exon 31344108 31344728 31344108 ID=MS.gene62494.t1.exon1;Parent=MS.gene62494.t1
chr2.1 CDS 31344108 31344728 31344108 ID=cds.MS.gene62494.t1;Parent=MS.gene62494.t1
chr2.1 exon 31344985 31345134 31344985 ID=MS.gene62494.t1.exon2;Parent=MS.gene62494.t1
chr2.1 CDS 31344985 31345134 31344985 ID=cds.MS.gene62494.t1;Parent=MS.gene62494.t1
chr2.1 exon 31346548 31346853 31346548 ID=MS.gene62494.t1.exon3;Parent=MS.gene62494.t1
chr2.1 CDS 31346548 31346853 31346548 ID=cds.MS.gene62494.t1;Parent=MS.gene62494.t1
Gene Sequence

>MS.gene62494

ATGATGAGTTCTCTTACTACTACCTTAAAGCTTTTATTTTCTTATGTGATTTTTGTCCTCCCAACTCTTGTTTCATGCGATTCATGCACATGTGAAACTGAACAAACCAAAGGAAATAGTGAAAAAAATGAAGCCCTTCATTACAAACTTGGTTCAATTGCTTCTGTCCTTGTTTGTGGTGCTCTTGGTGTAAGCCTTCCATTATTGAGCAAAAGAATTCCAATTCTAAGCCCTAAAAATGACATATTTTTCATGATTAAAGCCTTCGCGGCCGGTGTAATTTTGGCAACCGGTTTTATTCACATACTTCCGGATGCATTTGAGAGTTTGAATTCACCTTGTCTTAAGGAAAAACCTTGGGGTGATTTTCCACTTGCTGGACTTGTTGCTATGTTGTCTTCTATAGCAACTTTGATGGTTGATTCATTTGCATCTAGCTATTATCAAAAGAGACATTTTAATCCTTCTAAACAAGTTCCAGCAGATGAAGAAATAGGTGATGATCATGTTGGTCACATACATGTTCATACACATGCCACACATGGTCATGCTCATGGATCAGCTACCTCTTCTCAAGATTCCATATCACCTGAATTAATTAGGCAAAGGATCATATCACAAGTAAGCTCACTGAATTGTTTCTATGTGCAAAAATAGATACATGCATTTTTTTTTTTTTGTTTAACTCTCCATGAAAATAAAGACTCCGTAATCCAAAGCTCGGTTGAAATTTAAGTAAAGTTTAACCAATAATTACGTAATCGTTATTAATTAACCGAAACTTATTAATTACTTGAGCCAAAAGACTTGTTCATTATTTAATTTTTTTATTTGTGTACCCGATTAATATTCAATTTGGTTCTATTTTGTGTATCAGGTATTGGAGCTAGGAATAGTGGTCCATTCAGTGATTATTGGAATATCTTTAGGAACTGCACAAAGCATTGATACCATAAAGCCTCTCCTAGTGGCCTTGTCTTTCCATCAATTTTTTGAGGGAATGGGGCTTGGTGGCTGCATATCTCAGGTATTTTAAGAGTTTCTTTTTATACATTTAACATAGTCACACAATTTGAGCAGGTAGATCAAGATCAAACAATTTAAATTCAGATTTAGGTGAATTAGATTTAAAATACAAAGTTAGAAAATGAGTTGTTTTGAAATTAATTATAGTCCAATTTTATTTTACCAAATATTATAGTCCAAATTGTCAATTGCCTTATTGTGTGAGAAAGCATAGAATCTAAATTCTTTTTTTAGTGGATATGCAAGACCCTTCCAATTTATTTCTTTTACTTTCAACGTTTGCAACTTTGCAATTCTTCCTCGTTGTTGCAAAATTAAATCATATAAGGTATTAAGAAAGTGAAGAAATGAAGCTATAGTTAAACTTCCTAAAATGGAAAAGTTTCAAGTTCAAGAAAAGTGAGTTGCATGTGGATGTTACTATTGCAGTTTGGAAAGTAGGTTTGCAAAATGTTGCCATTATGACGACATCCTCCTACTCAGTAGTACAAATTAACAAAACTTCTTACTCCATGAAGAGAGAAAGACCTAAAAGTCACTAGTGAATTGAGCTGTTTGTTCATCCTATATGAGTCCAATAGTTCTAAAGTTAGATATAAGAATAAAATAAAAATCAAGACTAAAGACTCATTTTAGTTTTTTGTAAAAAAAAAATGTGGCACCTAATTGACTCTTAGAAACAATCCATGATGACATATTAGTCCTTAACACAAAAGACAATATCTCATGATTTTATAATTGAAAATGATTTTTTGTACACATCCTGACAGCCGACACAGTTTATAAGGTTTTAATACTCCCGACTTATTTACAAATGAAAGTTATCTTTTTAGTTTCATTCATAAATGATGTATCTAGTCTACGTAAAGATTTAGATACATCATTTATTAAATAAATCTAAAAAGTAATTTCTCTTATAAATGAGACCGAATGTAATAATATTTTTAATAGTATTTCTTTTCTTCTTAGATAAAAAACACTAACTCGGAGTGTATTGTATATGGTGTCCGACATATAATATTGGTTTCTTGTGTCAAAATAACGATTCTCATAATTAATTTTGCTAGCTTAGCTTATTTGTAATTTTCTCTACATGCTTAATTATATTTGATTCTACATTTATTAGAGAGGTTAAAAAAAAAATAACCATGTGATTGGTGTGAAGTACCCTCTACTTTGCCGATAATTAATCTCCGTAAGAGATCTTGGCTAACCATTGACCACTTTTAGTGGAGTCTGTCTTGTCAACCACACTTTTTCATCTACAATACTTGAACCCGAGACTTTACTTAAATGATTAGAGTTTAGTTCCTCTCGGACTAATGTAATATTGGTGATTAAAACCAGTATTTACTAAAAGCTAACAATAATTTGTGTATGTGTTTAGTTACTAATTATAACATATTATGTGCAGGCCAAATTTGAGTCTAGGTCCACAGCAATTATGGCAACATTTTTCTCCCTAACAACACCAATTGGGATAGCAATTGGGATGGGAGTATCAAGTGTGTACAAAGACAATAGCCCAACATCTCTAATTGTTGAAGGTGTTTTCAATTCTGCTTCAGCTGGAATCTTGATTTACATGGCACTAGTTGACCTACTTGCAGCTGATTTTATGAGTCCAAGGATGCAAAACAATTTCAAGATCCAAATAGGAGCAAATATTTCACTTCTTTTAGGTTCAGGTTGCATGTCCTTGTTGGCTAAATGGGCATAA
Protein sequence

>MS.gene62494.t1

MMSSLTTTLKLLFSYVIFVLPTLVSCDSCTCETEQTKGNSEKNEALHYKLGSIASVLVCGALGVSLPLLSKRIPILSPKNDIFFMIKAFAAGVILATGFIHILPDAFESLNSPCLKEKPWGDFPLAGLVAMLSSIATLMVDSFASSYYQKRHFNPSKQVPADEEIGDDHVGHIHVHTHATHGHAHGSATSSQDSISPELIRQRIISQVLELGIVVHSVIIGISLGTAQSIDTIKPLLVALSFHQFFEGMGLGGCISQAKFESRSTAIMATFFSLTTPIGIAIGMGVSSVYKDNSPTSLIVEGVFNSASAGILIYMALVDLLAADFMSPRMQNNFKIQIGANISLLLGSGCMSLLAKWA