AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene045723

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045723.t1 MTR_2g064310 97.765 358 8 0 1 358 1 358 0.0 712
MS.gene045723.t1 MTR_3g081640 61.732 358 121 6 11 358 10 361 2.71e-151 431
MS.gene045723.t1 MTR_3g081580 60.845 355 126 5 11 358 10 358 9.28e-146 416
MS.gene045723.t1 MTR_3g082050 59.538 346 131 4 15 358 11 349 5.27e-143 409
MS.gene045723.t1 MTR_3g082050 59.195 348 133 4 13 358 37 377 8.86e-141 404
MS.gene045723.t1 MTR_3g082050 62.813 320 113 3 41 358 57 372 2.99e-140 403
MS.gene045723.t1 MTR_3g081690 57.798 327 129 4 15 339 11 330 1.08e-127 370
MS.gene045723.t1 MTR_3g081690 61.130 301 111 3 41 339 57 353 5.17e-125 364
MS.gene045723.t1 MTR_4g083570 48.696 345 170 3 15 358 12 350 4.60e-116 340
MS.gene045723.t1 MTR_8g105030 48.169 355 155 7 11 352 9 347 1.44e-108 323
MS.gene045723.t1 MTR_6g007687 48.138 349 172 3 7 355 5 344 1.94e-106 316
MS.gene045723.t1 MTR_3g104400 44.904 363 164 4 30 358 5 365 5.28e-101 303
MS.gene045723.t1 MTR_1g016120 44.353 363 167 7 30 358 13 374 8.60e-95 287
MS.gene045723.t1 MTR_5g071990 39.583 336 177 6 28 358 4 318 2.26e-77 241
MS.gene045723.t1 MTR_3g081690 56.087 230 92 4 115 339 14 239 1.36e-76 236
MS.gene045723.t1 MTR_3g081690 66.460 161 47 1 196 356 52 205 4.57e-69 216
MS.gene045723.t1 MTR_3g081690 70.833 144 42 0 196 339 74 217 2.64e-68 214
MS.gene045723.t1 MTR_3g081630 56.164 73 30 2 84 155 23 94 9.35e-18 79.3
MS.gene045723.t1 MTR_4g006710 49.351 77 38 1 52 128 38 113 2.97e-16 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045723.t1 AT3G12750 58.953 363 126 7 4 358 8 355 2.97e-146 417
MS.gene045723.t1 AT1G05300 54.971 342 142 4 24 358 24 360 8.37e-127 368
MS.gene045723.t1 AT2G32270 53.963 328 127 3 31 358 36 339 4.67e-119 348
MS.gene045723.t1 AT5G62160 49.861 361 171 5 2 358 1 355 1.83e-110 327
MS.gene045723.t1 AT1G31260 47.522 343 175 2 20 358 23 364 2.60e-110 327
MS.gene045723.t1 AT4G19690 44.915 354 181 2 5 358 8 347 3.25e-100 300
MS.gene045723.t1 AT2G04032 42.897 359 197 3 5 358 10 365 1.15e-97 294
MS.gene045723.t1 AT4G19680 46.341 328 170 4 31 358 29 350 1.36e-97 293
MS.gene045723.t1 AT1G10970 43.288 365 170 3 31 358 10 374 4.65e-95 288
MS.gene045723.t1 AT1G10970 43.288 365 170 3 31 358 10 374 4.65e-95 288
MS.gene045723.t1 AT1G60960 41.579 380 170 4 31 358 36 415 1.44e-90 278
MS.gene045723.t1 AT1G60960 41.579 380 170 4 31 358 46 425 1.77e-90 278
MS.gene045723.t1 AT4G33020 38.734 395 193 9 9 358 1 391 6.72e-85 262
MS.gene045723.t1 AT4G33020 41.379 348 158 8 53 358 1 344 1.71e-82 254
MS.gene045723.t1 AT1G05300 50.207 241 108 4 24 257 24 259 3.38e-74 231
MS.gene045723.t1 AT2G30080 39.710 345 188 8 28 358 3 341 1.15e-72 229
MS.gene045723.t1 AT4G19680 41.245 257 142 5 3 259 4 251 2.60e-59 192
MS.gene045723.t1 AT4G19690 40.541 148 88 0 5 152 8 155 1.07e-31 119
MS.gene045723.t1 AT1G60960 39.344 122 74 0 31 152 46 167 5.27e-26 106

Find 68 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAATATTTGCTCCTATT+TGG 0.164008 2.3:-30591407 None:intergenic
CTTCGCGGCCGGTGTAATTT+TGG 0.178168 2.3:+30588881 MS.gene045723:CDS
GGCCACTAGGAGAGGCTTTA+TGG 0.212975 2.3:-30589564 None:intergenic
ATAAGAAAATAAAAGCTTTA+AGG 0.213779 2.3:-30588640 None:intergenic
GTGATTATTGGAATATCTTT+AGG 0.251826 2.3:+30589521 MS.gene045723:CDS
GCATGTCCTTGTTGGCTAAA+TGG 0.255419 2.3:+30591448 MS.gene045723:CDS
CTATATCACCTGAATTAATT+AGG 0.275569 2.3:+30589198 MS.gene045723:CDS
GTCTAGGTCCACAGCAATTA+TGG 0.281046 2.3:+30591182 MS.gene045723:CDS
CTATCCCAATTGGTGTTGTT+AGG 0.295394 2.3:-30591218 None:intergenic
TCTGCAGGAACTTGTTTAGA+AGG 0.308197 2.3:-30589080 None:intergenic
TGTGGACCTAGACTCAAATT+TGG 0.329474 2.3:-30591172 None:intergenic
TTCTCCCTAACAACACCAAT+TGG 0.338474 2.3:+30591213 MS.gene045723:CDS
CATGTCCTTGTTGGCTAAAT+GGG 0.342112 2.3:+30591449 MS.gene045723:CDS
TTTGAATTCACCTTGTCTTA+AGG 0.344478 2.3:+30588944 MS.gene045723:CDS
AACAATTTCAAGATCCAAAT+AGG 0.351306 2.3:+30591393 MS.gene045723:CDS
ATCCTCTGCCTAATTAATTC+AGG 0.353696 2.3:-30589206 None:intergenic
GTCCTTGTTTGTGGTGCTCT+TGG 0.359872 2.3:+30588783 MS.gene045723:CDS
ATTGCTTCTGTCCTTGTTTG+TGG 0.360374 2.3:+30588774 MS.gene045723:CDS
ACACCAATTGGGATAGCAAT+TGG 0.365479 2.3:+30591225 MS.gene045723:CDS
GTTCCTGCAGATGAAGAAAT+AGG 0.367792 2.3:+30589092 MS.gene045723:CDS
TTCAGGTTGCATGTCCTTGT+TGG 0.384055 2.3:+30591440 MS.gene045723:CDS
GTGGTCCATTCAGTGATTAT+TGG 0.385147 2.3:+30589509 MS.gene045723:CDS
TTTGAGGGAATGGGGCTTGG+TGG 0.391061 2.3:+30589605 MS.gene045723:CDS
GTCTTCTATAGCAACTTTGA+TGG 0.412702 2.3:+30589013 MS.gene045723:CDS
TTGAACCAAGTTTGTAATGA+AGG 0.424018 2.3:-30588752 None:intergenic
CGGAAGTATGTGAATAAAAC+CGG 0.425664 2.3:-30588907 None:intergenic
AGCTGGAATCTTGATTTACA+TGG 0.436582 2.3:+30591323 MS.gene045723:CDS
CCAACATCTCTAATTGTTGA+AGG 0.439198 2.3:+30591282 MS.gene045723:CDS
GCTTGGTGGCTGCATATCTC+AGG 0.439946 2.3:+30589619 MS.gene045723:CDS
GAAGCCCTTCATTACAAACT+TGG 0.440871 2.3:+30588747 MS.gene045723:CDS
TATCCCAATTGGTGTTGTTA+GGG 0.445987 2.3:-30591217 None:intergenic
ATCCCAATTGCTATCCCAAT+TGG 0.451924 2.3:-30591228 None:intergenic
CACCAATTGGGATAGCAATT+GGG 0.462103 2.3:+30591226 MS.gene045723:CDS
CTTCAACAATTAGAGATGTT+GGG 0.470274 2.3:-30591281 None:intergenic
TTCAAACTCTCAAATGCATC+CGG 0.473075 2.3:-30588927 None:intergenic
CCTTCAACAATTAGAGATGT+TGG 0.477232 2.3:-30591282 None:intergenic
GTGTATCAGGTATTGGAGCT+AGG 0.482364 2.3:+30589482 MS.gene045723:intron
TCACCTATTTCTTCATCTGC+AGG 0.483369 2.3:-30589095 None:intergenic
ATGATTAAAGCCTTCGCGGC+CGG 0.485121 2.3:+30588870 MS.gene045723:CDS
TGAACCAAGTTTGTAATGAA+GGG 0.486936 2.3:-30588751 None:intergenic
TCTCCCTAACAACACCAATT+GGG 0.487085 2.3:+30591214 MS.gene045723:CDS
CAAAATTACACCGGCCGCGA+AGG 0.490438 2.3:-30588880 None:intergenic
GAATCGCATGAAACAAGAGT+TGG 0.514536 2.3:-30588678 None:intergenic
GCCACACATGGTCATGCTCA+TGG 0.524602 2.3:+30589152 MS.gene045723:CDS
GGTATTGGAGCTAGGAATAG+TGG 0.526265 2.3:+30589490 MS.gene045723:intron
TTTCATGATTAAAGCCTTCG+CGG 0.533059 2.3:+30588866 MS.gene045723:CDS
AATCGCATGAAACAAGAGTT+GGG 0.534049 2.3:-30588677 None:intergenic
ATATTCCAATAATCACTGAA+TGG 0.557063 2.3:-30589514 None:intergenic
TGCAGGCCAAATTTGAGTCT+AGG 0.558044 2.3:+30591166 MS.gene045723:intron
TCATAAAATCAGCTGCAAGT+AGG 0.577409 2.3:-30591356 None:intergenic
CACCTGAATTAATTAGGCAG+AGG 0.582539 2.3:+30589204 MS.gene045723:CDS
GATGGAAAGACAAGGCCACT+AGG 0.600701 2.3:-30589577 None:intergenic
AATTGGGATAGCAATTGGGA+TGG 0.606135 2.3:+30591230 MS.gene045723:CDS
AAAGACAAGGCCACTAGGAG+AGG 0.616440 2.3:-30589572 None:intergenic
CACCAAGAGCACCACAAACA+AGG 0.617962 2.3:-30588785 None:intergenic
TGATATAGAATCTTGAGAAG+AGG 0.621265 2.3:-30589183 None:intergenic
ATAGCAACAAGTCCAGCAAG+TGG 0.627097 2.3:-30588987 None:intergenic
ATTGGGATAGCAATTGGGAT+GGG 0.627940 2.3:+30591231 MS.gene045723:CDS
GTTCATACACATGCCACACA+TGG 0.634479 2.3:+30589140 MS.gene045723:CDS
AAATGTTGCCATAATTGCTG+TGG 0.645802 2.3:-30591190 None:intergenic
ACCGGTTGCCAAAATTACAC+CGG 0.652557 2.3:-30588889 None:intergenic
GAAATAGGTGATGATCATGT+TGG 0.666063 2.3:+30589107 MS.gene045723:CDS
TACCATAAAGCCTCTCCTAG+TGG 0.667478 2.3:+30589562 MS.gene045723:CDS
TGTGAAACTGAACAAACCAA+AGG 0.668514 2.3:+30588708 MS.gene045723:CDS
GCAAGTGGAAAATCACCCCA+AGG 0.669491 2.3:-30588972 None:intergenic
TTATGCCCATTTAGCCAACA+AGG 0.682180 2.3:-30591454 None:intergenic
TCCATGAGCATGACCATGTG+TGG 0.697142 2.3:-30589153 None:intergenic
CGCATGAAACAAGAGTTGGG+AGG 0.742798 2.3:-30588674 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTTGGTAAAATAAAAT+TGG - chr2.3:30589791-30589810 None:intergenic 10.0%
!! GTTAAAAATATTATTACATT+CGG - chr2.3:30590688-30590707 None:intergenic 10.0%
!! AAAAAACCAATATTATATGT+CGG - chr2.3:30590770-30590789 None:intergenic 15.0%
!! AAAAATTTAAACACTCAAAT+AGG + chr2.3:30590438-30590457 MS.gene045723:intron 15.0%
!! ATAAGAAAATAAAAGCTTTA+AGG - chr2.3:30588643-30588662 None:intergenic 15.0%
!! TGAAAGTAAAAGAAATAAAT+TGG - chr2.3:30589915-30589934 None:intergenic 15.0%
!! TTGCAAAATTAAATCATATA+AGG + chr2.3:30589966-30589985 MS.gene045723:intron 15.0%
!!! AATCTAAATTCTTTTTTTAG+TGG + chr2.3:30589854-30589873 MS.gene045723:intron 15.0%
!!! ATGAAAAATATGTCATTTTT+AGG - chr2.3:30588852-30588871 None:intergenic 15.0%
!!! GTTTTTTGTAAAAAAAAATG+TGG + chr2.3:30590285-30590304 MS.gene045723:intron 15.0%
!!! TGAAAAATATGTCATTTTTA+GGG - chr2.3:30588851-30588870 None:intergenic 15.0%
!! AACCAAATTGAATATTAATC+GGG - chr2.3:30589455-30589474 None:intergenic 20.0%
!! AATAACGATTACGTAATTAT+TGG - chr2.3:30589363-30589382 None:intergenic 20.0%
!! AATTATAACATATTATGTGC+AGG + chr2.3:30591149-30591168 MS.gene045723:intron 20.0%
!! ACAATTTGGACTATAATATT+TGG - chr2.3:30589805-30589824 None:intergenic 20.0%
!! CTCAAGTAATTAATAAGTTT+CGG - chr2.3:30589392-30589411 None:intergenic 20.0%
!! GAACCAAATTGAATATTAAT+CGG - chr2.3:30589456-30589475 None:intergenic 20.0%
!! GACAATTTAAATTCAGATTT+AGG + chr2.3:30589708-30589727 MS.gene045723:intron 20.0%
!! TAATCATTTAAGTAAAGTCT+CGG - chr2.3:30591037-30591056 None:intergenic 20.0%
!! TAGATAAAAAAACACTAACT+CGG + chr2.3:30590725-30590744 MS.gene045723:intron 20.0%
!! TATAGTTAAACTTCCTAAAA+TGG + chr2.3:30590014-30590033 MS.gene045723:intron 20.0%
!! TTTGATTCTACATTTATTAG+AGG + chr2.3:30590866-30590885 MS.gene045723:intron 20.0%
!!! ATATCTAACTTTAGAACTAT+TGG - chr2.3:30590227-30590246 None:intergenic 20.0%
!!! ATTTTTATGGGACTAAATTA+GGG - chr2.3:30590312-30590331 None:intergenic 20.0%
!!! ATTTTTTTCACTATTTCCTT+TGG - chr2.3:30588727-30588746 None:intergenic 20.0%
!!! CAATTTACAGACATTTTTAT+GGG - chr2.3:30590324-30590343 None:intergenic 20.0%
!!! GAGTGTTTAAATTTTTGTTA+AGG - chr2.3:30590434-30590453 None:intergenic 20.0%
!!! TAAATAATGAACAAGTCTTT+TGG - chr2.3:30589415-30589434 None:intergenic 20.0%
!!! TCAATTTACAGACATTTTTA+TGG - chr2.3:30590325-30590344 None:intergenic 20.0%
!!! TTTACAAGGTTTTAATACTT+CGG + chr2.3:30590536-30590555 MS.gene045723:intron 20.0%
! AAAAAATTGATGGAAAGACA+AGG - chr2.3:30589588-30589607 None:intergenic 25.0%
! AACAATTTCAAGATCCAAAT+AGG + chr2.3:30591393-30591412 MS.gene045723:CDS 25.0%
! AATCATTTAAGTAAAGTCTC+GGG - chr2.3:30591036-30591055 None:intergenic 25.0%
! ATATTCCAATAATCACTGAA+TGG - chr2.3:30589517-30589536 None:intergenic 25.0%
! CTATATCACCTGAATTAATT+AGG + chr2.3:30589198-30589217 MS.gene045723:CDS 25.0%
! GTGATTATTGGAATATCTTT+AGG + chr2.3:30589521-30589540 MS.gene045723:CDS 25.0%
! TACCCGATTAATATTCAATT+TGG + chr2.3:30589450-30589469 MS.gene045723:intron 25.0%
!! ACTTGAAACTTTTCCATTTT+AGG - chr2.3:30590030-30590049 None:intergenic 25.0%
!! CATTTTTATGGGACTAAATT+AGG - chr2.3:30590313-30590332 None:intergenic 25.0%
!! GCAAATATTTCACTTCTTTT+AGG + chr2.3:30591417-30591436 MS.gene045723:CDS 25.0%
!! TTTTTATGGGACTAAATTAG+GGG - chr2.3:30590311-30590330 None:intergenic 25.0%
!!! TCTTTCCATCAATTTTTTGA+GGG + chr2.3:30589590-30589609 MS.gene045723:CDS 25.0%
!!! TGAGATATTGTCTTTTTTCT+TGG - chr2.3:30590466-30590485 None:intergenic 25.0%
AAAAAAATTAGCCATGCGAT+TGG + chr2.3:30590892-30590911 MS.gene045723:intron 30.0%
AAATTCAATACCAACCCATA+AGG - chr2.3:30589891-30589910 None:intergenic 30.0%
AATTCAATACCAACCCATAA+GGG - chr2.3:30589890-30589909 None:intergenic 30.0%
ACTTTGCCGATAATTAATCT+CGG + chr2.3:30590930-30590949 MS.gene045723:intron 30.0%
ATTAATTATCGGCAAAGTAG+AGG - chr2.3:30590928-30590947 None:intergenic 30.0%
CAATAAGGCAATTGACAATT+TGG - chr2.3:30589819-30589838 None:intergenic 30.0%
CTCTTACCGAGATTAATTAT+CGG - chr2.3:30590939-30590958 None:intergenic 30.0%
CTTCAACAATTAGAGATGTT+GGG - chr2.3:30591284-30591303 None:intergenic 30.0%
GTATTGTAGATGAAAAAGTG+TGG - chr2.3:30591008-30591027 None:intergenic 30.0%
GTGAAATATTTGCTCCTATT+TGG - chr2.3:30591410-30591429 None:intergenic 30.0%
TAGAACTATTGGACTCATAT+AGG - chr2.3:30590216-30590235 None:intergenic 30.0%
TGAACCAAGTTTGTAATGAA+GGG - chr2.3:30588754-30588773 None:intergenic 30.0%
TGATATAGAATCTTGAGAAG+AGG - chr2.3:30589186-30589205 None:intergenic 30.0%
TTAATTATCGGCAAAGTAGA+GGG - chr2.3:30590927-30590946 None:intergenic 30.0%
TTGAACCAAGTTTGTAATGA+AGG - chr2.3:30588755-30588774 None:intergenic 30.0%
TTGTCTTAAGGAAAAACCTT+GGG + chr2.3:30588956-30588975 MS.gene045723:CDS 30.0%
TTTGAATTCACCTTGTCTTA+AGG + chr2.3:30588944-30588963 MS.gene045723:CDS 30.0%
! CTATTTTGTGTATCAGGTAT+TGG + chr2.3:30589475-30589494 MS.gene045723:intron 30.0%
! GGAATTCTTTTGCTCAATAA+TGG - chr2.3:30588819-30588838 None:intergenic 30.0%
! GTTTCTAAGAGTCAATTTAC+AGG - chr2.3:30590390-30590409 None:intergenic 30.0%
! TCAATTCACTAGTGACTTTT+AGG - chr2.3:30590180-30590199 None:intergenic 30.0%
!! GATTTAATTTTGCAACAACG+AGG - chr2.3:30589961-30589980 None:intergenic 30.0%
!! GTTAATTTGTACTACTGAGT+AGG - chr2.3:30590137-30590156 None:intergenic 30.0%
!! TTCTTTTGCTCAATAATGGA+AGG - chr2.3:30588815-30588834 None:intergenic 30.0%
!! TTGAAATTGTTTTGCATCCT+TGG - chr2.3:30591384-30591403 None:intergenic 30.0%
!!! ATCAATTTTTTGAGGGAATG+GGG + chr2.3:30589597-30589616 MS.gene045723:CDS 30.0%
!!! ATTTCACTTCTTTTAGGTTC+AGG + chr2.3:30591423-30591442 MS.gene045723:CDS 30.0%
!!! CATCAATTTTTTGAGGGAAT+GGG + chr2.3:30589596-30589615 MS.gene045723:CDS 30.0%
!!! GTCTTTCCATCAATTTTTTG+AGG + chr2.3:30589589-30589608 MS.gene045723:CDS 30.0%
!!! TCATTTTTAGGGCTTAGAAT+TGG - chr2.3:30588840-30588859 None:intergenic 30.0%
!!! TTACGGAGTCTTTATTTTCA+TGG - chr2.3:30589306-30589325 None:intergenic 30.0%
!!! TTGGTTCTATTTTGTGTATC+AGG + chr2.3:30589469-30589488 MS.gene045723:intron 30.0%
AAATGTTGCCATAATTGCTG+TGG - chr2.3:30591193-30591212 None:intergenic 35.0%
AACTCGGAGTGTATTGTATA+TGG + chr2.3:30590741-30590760 MS.gene045723:intron 35.0%
AATCGCATGAAACAAGAGTT+GGG - chr2.3:30588680-30588699 None:intergenic 35.0%
AATTTGTACTACTGAGTAGG+AGG - chr2.3:30590134-30590153 None:intergenic 35.0%
ACTATTGCAGTTTGGAAAGT+AGG + chr2.3:30590079-30590098 MS.gene045723:intron 35.0%
AGCTGGAATCTTGATTTACA+TGG + chr2.3:30591323-30591342 MS.gene045723:CDS 35.0%
ATCCTCTGCCTAATTAATTC+AGG - chr2.3:30589209-30589228 None:intergenic 35.0%
CAATATTACATTAGTCCGAG+AGG - chr2.3:30591070-30591089 None:intergenic 35.0%
CCAACATCTCTAATTGTTGA+AGG + chr2.3:30591282-30591301 MS.gene045723:CDS 35.0%
CCATTCCCTCAAAAAATTGA+TGG - chr2.3:30589598-30589617 None:intergenic 35.0%
CCTTCAACAATTAGAGATGT+TGG - chr2.3:30591285-30591304 None:intergenic 35.0%
CTATGCTTTCTCACACAATA+AGG - chr2.3:30589834-30589853 None:intergenic 35.0%
CTCTCGGACTAATGTAATAT+TGG + chr2.3:30591068-30591087 MS.gene045723:intron 35.0%
CTTAAATTTCAACCGAGCTT+TGG - chr2.3:30589330-30589349 None:intergenic 35.0%
CTTGTCTTAAGGAAAAACCT+TGG + chr2.3:30588955-30588974 MS.gene045723:CDS 35.0%
GAAATAGGTGATGATCATGT+TGG + chr2.3:30589107-30589126 MS.gene045723:CDS 35.0%
GTCTTCTATAGCAACTTTGA+TGG + chr2.3:30589013-30589032 MS.gene045723:CDS 35.0%
TAAAACCTTGTAAACCGTGT+CGG - chr2.3:30590530-30590549 None:intergenic 35.0%
TCATAAAATCAGCTGCAAGT+AGG - chr2.3:30591359-30591378 None:intergenic 35.0%
TGGATGTTACTATTGCAGTT+TGG + chr2.3:30590071-30590090 MS.gene045723:intron 35.0%
TGGTGTCCGACATATAATAT+TGG + chr2.3:30590761-30590780 MS.gene045723:intron 35.0%
TGTCTTAAGGAAAAACCTTG+GGG + chr2.3:30588957-30588976 MS.gene045723:CDS 35.0%
TGTGAAACTGAACAAACCAA+AGG + chr2.3:30588708-30588727 MS.gene045723:CDS 35.0%
TTAATCTCGGTAAGAGATCT+TGG + chr2.3:30590943-30590962 MS.gene045723:intron 35.0%
TTCAAACTCTCAAATGCATC+CGG - chr2.3:30588930-30588949 None:intergenic 35.0%
TTTAGGTCTTTCTCTCTTCA+TGG - chr2.3:30590163-30590182 None:intergenic 35.0%
TTTCATGATTAAAGCCTTCG+CGG + chr2.3:30588866-30588885 MS.gene045723:CDS 35.0%
! CAAGGTTTTTCCTTAAGACA+AGG - chr2.3:30588957-30588976 None:intergenic 35.0%
! CGGAAGTATGTGAATAAAAC+CGG - chr2.3:30588910-30588929 None:intergenic 35.0%
! GATTAGAGTTTAGTTCCTCT+CGG + chr2.3:30591052-30591071 MS.gene045723:intron 35.0%
!! TAACCATTGACCACTTTTAG+TGG + chr2.3:30590967-30590986 MS.gene045723:intron 35.0%
!! TATCCCAATTGGTGTTGTTA+GGG - chr2.3:30591220-30591239 None:intergenic 35.0%
!!! CCATCAATTTTTTGAGGGAA+TGG + chr2.3:30589595-30589614 MS.gene045723:CDS 35.0%
!!! CGGTTTTATTCACATACTTC+CGG + chr2.3:30588908-30588927 MS.gene045723:CDS 35.0%
AAGACAGACTCCACTAAAAG+TGG - chr2.3:30590980-30590999 None:intergenic 40.0%
AATTGGGATAGCAATTGGGA+TGG + chr2.3:30591230-30591249 MS.gene045723:CDS 40.0%
ACACCAATTGGGATAGCAAT+TGG + chr2.3:30591225-30591244 MS.gene045723:CDS 40.0%
ACTCCACTAAAAGTGGTCAA+TGG - chr2.3:30590973-30590992 None:intergenic 40.0%
ATCCCAATTGCTATCCCAAT+TGG - chr2.3:30591231-30591250 None:intergenic 40.0%
ATTGGGATAGCAATTGGGAT+GGG + chr2.3:30591231-30591250 MS.gene045723:CDS 40.0%
CAAGAAAAGTGAGTTGCATG+TGG + chr2.3:30590051-30590070 MS.gene045723:intron 40.0%
CACCAATTGGGATAGCAATT+GGG + chr2.3:30591226-30591245 MS.gene045723:CDS 40.0%
CACCTGAATTAATTAGGCAG+AGG + chr2.3:30589204-30589223 MS.gene045723:CDS 40.0%
CATAGTCACACAATTTGAGC+AGG + chr2.3:30589672-30589691 MS.gene045723:intron 40.0%
GAAGCCCTTCATTACAAACT+TGG + chr2.3:30588747-30588766 MS.gene045723:CDS 40.0%
GAATCGCATGAAACAAGAGT+TGG - chr2.3:30588681-30588700 None:intergenic 40.0%
GTGGTCCATTCAGTGATTAT+TGG + chr2.3:30589509-30589528 MS.gene045723:CDS 40.0%
GTTCCTGCAGATGAAGAAAT+AGG + chr2.3:30589092-30589111 MS.gene045723:CDS 40.0%
TCTCCCTAACAACACCAATT+GGG + chr2.3:30591214-30591233 MS.gene045723:CDS 40.0%
TGGATATGCAAGACCCTTAT+GGG + chr2.3:30589874-30589893 MS.gene045723:intron 40.0%
TGTGGACCTAGACTCAAATT+TGG - chr2.3:30591175-30591194 None:intergenic 40.0%
TTATGCCCATTTAGCCAACA+AGG - chr2.3:30591457-30591476 None:intergenic 40.0%
TTCTCCCTAACAACACCAAT+TGG + chr2.3:30591213-30591232 MS.gene045723:CDS 40.0%
! ATTGCTTCTGTCCTTGTTTG+TGG + chr2.3:30588774-30588793 MS.gene045723:CDS 40.0%
! CATGTCCTTGTTGGCTAAAT+GGG + chr2.3:30591449-30591468 MS.gene045723:CDS 40.0%
! GTTTTCAATTCTGCTTCAGC+TGG + chr2.3:30591306-30591325 MS.gene045723:CDS 40.0%
! TCACCTATTTCTTCATCTGC+AGG - chr2.3:30589098-30589117 None:intergenic 40.0%
! TCTGCAGGAACTTGTTTAGA+AGG - chr2.3:30589083-30589102 None:intergenic 40.0%
!! CAGCTGATTTTATGAGTCCA+AGG + chr2.3:30591364-30591383 MS.gene045723:CDS 40.0%
!! CTATCCCAATTGGTGTTGTT+AGG - chr2.3:30591221-30591240 None:intergenic 40.0%
!! TTCAACCGAGCTTTGGATTA+CGG - chr2.3:30589323-30589342 None:intergenic 40.0%
ACCGGTTGCCAAAATTACAC+CGG - chr2.3:30588892-30588911 None:intergenic 45.0%
AGACTCCGTAATCCAAAGCT+CGG + chr2.3:30589315-30589334 MS.gene045723:intron 45.0%
ATAGCAACAAGTCCAGCAAG+TGG - chr2.3:30588990-30589009 None:intergenic 45.0%
GTAGGAGGATGTCGTCATAA+TGG - chr2.3:30590119-30590138 None:intergenic 45.0%
GTCTAGGTCCACAGCAATTA+TGG + chr2.3:30591182-30591201 MS.gene045723:CDS 45.0%
GTGGATATGCAAGACCCTTA+TGG + chr2.3:30589873-30589892 MS.gene045723:intron 45.0%
GTTCATACACATGCCACACA+TGG + chr2.3:30589140-30589159 MS.gene045723:CDS 45.0%
TACCATAAAGCCTCTCCTAG+TGG + chr2.3:30589562-30589581 MS.gene045723:CDS 45.0%
TATGCAAGACCCTTATGGGT+TGG + chr2.3:30589878-30589897 MS.gene045723:intron 45.0%
TGCAGGCCAAATTTGAGTCT+AGG + chr2.3:30591166-30591185 MS.gene045723:intron 45.0%
! GCATGTCCTTGTTGGCTAAA+TGG + chr2.3:30591448-30591467 MS.gene045723:CDS 45.0%
! GGTATTGGAGCTAGGAATAG+TGG + chr2.3:30589490-30589509 MS.gene045723:intron 45.0%
!! GTGTATCAGGTATTGGAGCT+AGG + chr2.3:30589482-30589501 MS.gene045723:intron 45.0%
!! TTCAGGTTGCATGTCCTTGT+TGG + chr2.3:30591440-30591459 MS.gene045723:CDS 45.0%
!!! TTTTTTGAGGGAATGGGGCT+TGG + chr2.3:30589602-30589621 MS.gene045723:CDS 45.0%
AAACATCCTGACAGCCGACA+CGG + chr2.3:30590513-30590532 MS.gene045723:intron 50.0%
AAAGACAAGGCCACTAGGAG+AGG - chr2.3:30589575-30589594 None:intergenic 50.0%
ATGATTAAAGCCTTCGCGGC+CGG + chr2.3:30588870-30588889 MS.gene045723:CDS 50.0%
CGCATGAAACAAGAGTTGGG+AGG - chr2.3:30588677-30588696 None:intergenic 50.0%
GATGGAAAGACAAGGCCACT+AGG - chr2.3:30589580-30589599 None:intergenic 50.0%
GCAAGTGGAAAATCACCCCA+AGG - chr2.3:30588975-30588994 None:intergenic 50.0%
GGTACTTCACACCAATCGCA+TGG - chr2.3:30590906-30590925 None:intergenic 50.0%
TACCAACCGAGCTTAGCTCA+CGG + chr2.3:30590362-30590381 MS.gene045723:intron 50.0%
TCCATGAGCATGACCATGTG+TGG - chr2.3:30589156-30589175 None:intergenic 50.0%
! GTCCTTGTTTGTGGTGCTCT+TGG + chr2.3:30588783-30588802 MS.gene045723:CDS 50.0%
! TGAGCTAAGCTCGGTTGGTA+AGG - chr2.3:30590362-30590381 None:intergenic 50.0%
! TGGGGTGATTTTCCACTTGC+TGG + chr2.3:30588975-30588994 MS.gene045723:CDS 50.0%
!! CACCAAGAGCACCACAAACA+AGG - chr2.3:30588788-30588807 None:intergenic 50.0%
!! GCCGGTGTAATTTTGGCAAC+CGG + chr2.3:30588888-30588907 MS.gene045723:CDS 50.0%
ACCAACCGAGCTTAGCTCAC+GGG + chr2.3:30590363-30590382 MS.gene045723:intron 55.0%
CAAAATTACACCGGCCGCGA+AGG - chr2.3:30588883-30588902 None:intergenic 55.0%
GACAGCCGACACGGTTTACA+AGG + chr2.3:30590522-30590541 MS.gene045723:intron 55.0%
GCCACACATGGTCATGCTCA+TGG + chr2.3:30589152-30589171 MS.gene045723:CDS 55.0%
GGCCACTAGGAGAGGCTTTA+TGG - chr2.3:30589567-30589586 None:intergenic 55.0%
TTTGAGGGAATGGGGCTTGG+TGG + chr2.3:30589605-30589624 MS.gene045723:CDS 55.0%
! CTTCGCGGCCGGTGTAATTT+TGG + chr2.3:30588881-30588900 MS.gene045723:CDS 55.0%
! GCTTGGTGGCTGCATATCTC+AGG + chr2.3:30589619-30589638 MS.gene045723:CDS 55.0%
!! TGTAAACCGTGTCGGCTGTC+AGG - chr2.3:30590522-30590541 None:intergenic 55.0%
CAGGTCCCGTGAGCTAAGCT+CGG - chr2.3:30590371-30590390 None:intergenic 60.0%
TCCCGTGAGCTAAGCTCGGT+TGG - chr2.3:30590367-30590386 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 30588618 30591476 30588618 ID=MS.gene045723
chr2.3 mRNA 30588618 30591476 30588618 ID=MS.gene045723.t1;Parent=MS.gene045723
chr2.3 exon 30588618 30589238 30588618 ID=MS.gene045723.t1.exon1;Parent=MS.gene045723.t1
chr2.3 CDS 30588618 30589238 30588618 ID=cds.MS.gene045723.t1;Parent=MS.gene045723.t1
chr2.3 exon 30589491 30589640 30589491 ID=MS.gene045723.t1.exon2;Parent=MS.gene045723.t1
chr2.3 CDS 30589491 30589640 30589491 ID=cds.MS.gene045723.t1;Parent=MS.gene045723.t1
chr2.3 exon 30591171 30591476 30591171 ID=MS.gene045723.t1.exon3;Parent=MS.gene045723.t1
chr2.3 CDS 30591171 30591476 30591171 ID=cds.MS.gene045723.t1;Parent=MS.gene045723.t1
Gene Sequence

>MS.gene045723

ATGATGAGTTCTCTTACTACTACCTTAAAGCTTTTATTTTCTTATGTGATTTTTGTCCTCCCAACTCTTGTTTCATGCGATTCATGCACATGTGAAACTGAACAAACCAAAGGAAATAGTGAAAAAAATGAAGCCCTTCATTACAAACTTGGTTCAATTGCTTCTGTCCTTGTTTGTGGTGCTCTTGGTGTAAGCCTTCCATTATTGAGCAAAAGAATTCCAATTCTAAGCCCTAAAAATGACATATTTTTCATGATTAAAGCCTTCGCGGCCGGTGTAATTTTGGCAACCGGTTTTATTCACATACTTCCGGATGCATTTGAGAGTTTGAATTCACCTTGTCTTAAGGAAAAACCTTGGGGTGATTTTCCACTTGCTGGACTTGTTGCTATGTTGTCTTCTATAGCAACTTTGATGGTAGATTCATTTGCATCTAGCTATTATCAAAAGAGACATTTTAATCCTTCTAAACAAGTTCCTGCAGATGAAGAAATAGGTGATGATCATGTTGGTCACATACATGTTCATACACATGCCACACATGGTCATGCTCATGGATCAGCTACCTCTTCTCAAGATTCTATATCACCTGAATTAATTAGGCAGAGGATCATATCACAAGTAAGCTCACTGAATTGTTTCTATGTGCAAAAATAGATACATGCATTTTTTTTTGTTTAACTCTCCATGAAAATAAAGACTCCGTAATCCAAAGCTCGGTTGAAATTTAAGTAAAGTTTAACCAATAATTACGTAATCGTTATTAATTAACCGAAACTTATTAATTACTTGAGCCAAAAGACTTGTTCATTATTTAATTTTTTTATTTGTGTACCCGATTAATATTCAATTTGGTTCTATTTTGTGTATCAGGTATTGGAGCTAGGAATAGTGGTCCATTCAGTGATTATTGGAATATCTTTAGGAACTGCACAAAGCATTGATACCATAAAGCCTCTCCTAGTGGCCTTGTCTTTCCATCAATTTTTTGAGGGAATGGGGCTTGGTGGCTGCATATCTCAGGTATTTTAAGAGTTTCTTTTTATACATTTAACATAGTCACACAATTTGAGCAGGTAGATCAAGATCAGACAATTTAAATTCAGATTTAGGTGAATTAGATTTAAAATACAAAGTTAGAAAATGAGTTGTTTTGAAATTAATTATAGTCCAATTTTATTTTACCAAATATTATAGTCCAAATTGTCAATTGCCTTATTGTGTGAGAAAGCATAGAATCTAAATTCTTTTTTTAGTGGATATGCAAGACCCTTATGGGTTGGTATTGAATTTTCCAATTTATTTCTTTTACTTTCAACGTTTGCAACTTTGCAATTCTTCCTCGTTGTTGCAAAATTAAATCATATAAGGTATTAAGAAAGTGAAGAAATGAAGCTATAGTTAAACTTCCTAAAATGGAAAAGTTTCAAGTTCAAGAAAAGTGAGTTGCATGTGGATGTTACTATTGCAGTTTGGAAAGTAGGTTTGCAAAATGTTGCCATTATGACGACATCCTCCTACTCAGTAGTACAAATTAACACTCCATGAAGAGAGAAAGACCTAAAAGTCACTAGTGAATTGAGCTGTTTGTTCATCCTATATGAGTCCAATAGTTCTAAAGTTAGATATAAGAATAAAATAAAAATCAAGACTAAAGACTCATTTTAGTTTTTTGTAAAAAAAAATGTGGCCCCTAATTTAGTCCCATAAAAATGTCTGTAAATTGACTCTTATGCATTGTCCTTACCAACCGAGCTTAGCTCACGGGACCTGTAAATTGACTCTTAGAAACAATCTATCATGACATATTAGTCCTTAACAAAAATTTAAACACTCAAATAGGTACCAAGAAAAAAGACAATATCTCATGATTTTATAATTGTAAATATTTTTTTAAACATCCTGACAGCCGACACGGTTTACAAGGTTTTAATACTTCGGACTTATTTACAAGTGAAAGTTATCTTTTTAGTTTCATTCATAAATGATGTATTTAGTCTACGTGAAGATTTAGATACATCATTTATTAAATAAATCTAAAAAGTAAACTTTCTCTTATAAATGAGACCGAATGTAATAATATTTTTAACAATATTTCTTTTCTTCTTAGATAAAAAAACACTAACTCGGAGTGTATTGTATATGGTGTCCGACATATAATATTGGTTTTTTGTGTCAAAATAACGATTCTCATAATTAATTTTGCTAGCTTAGCTTATTTGTAATTTTCTCTACATGCTCAATTATATTTGATTCTACATTTATTAGAGGTTAAAAAAAATTAGCCATGCGATTGGTGTGAAGTACCCTCTACTTTGCCGATAATTAATCTCGGTAAGAGATCTTGGCTAACCATTGACCACTTTTAGTGGAGTCTGTCTTGTCAACCACACTTTTTCATCTACAATACTTGAACCCGAGACTTTACTTAAATGATTAGAGTTTAGTTCCTCTCGGACTAATGTAATATTGGTGATTAAAATCAGTATTTACTAAAAGCTAACAATAATTTGTGTATGTGTTTAGTTACTAATTATAACATATTATGTGCAGGCCAAATTTGAGTCTAGGTCCACAGCAATTATGGCAACATTTTTCTCCCTAACAACACCAATTGGGATAGCAATTGGGATGGGAGTATCAAGTGTGTACAAAGACAATAGCCCAACATCTCTAATTGTTGAAGGTGTTTTCAATTCTGCTTCAGCTGGAATCTTGATTTACATGGCACTAGTTGACCTACTTGCAGCTGATTTTATGAGTCCAAGGATGCAAAACAATTTCAAGATCCAAATAGGAGCAAATATTTCACTTCTTTTAGGTTCAGGTTGCATGTCCTTGTTGGCTAAATGGGCATAA
Protein sequence

>MS.gene045723.t1

MMSSLTTTLKLLFSYVIFVLPTLVSCDSCTCETEQTKGNSEKNEALHYKLGSIASVLVCGALGVSLPLLSKRIPILSPKNDIFFMIKAFAAGVILATGFIHILPDAFESLNSPCLKEKPWGDFPLAGLVAMLSSIATLMVDSFASSYYQKRHFNPSKQVPADEEIGDDHVGHIHVHTHATHGHAHGSATSSQDSISPELIRQRIISQVLELGIVVHSVIIGISLGTAQSIDTIKPLLVALSFHQFFEGMGLGGCISQAKFESRSTAIMATFFSLTTPIGIAIGMGVSSVYKDNSPTSLIVEGVFNSASAGILIYMALVDLLAADFMSPRMQNNFKIQIGANISLLLGSGCMSLLAKWA