Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000529.t1 | XP_013446956.1 | 99.2 | 255 | 2 | 0 | 1 | 255 | 1 | 255 | 3.90E-130 | 474.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000529.t1 | Q2QR07 | 56.5 | 248 | 101 | 3 | 8 | 249 | 10 | 256 | 7.3e-69 | 261.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000529.t1 | A0A072TVU1 | 99.2 | 255 | 2 | 0 | 1 | 255 | 1 | 255 | 2.8e-130 | 474.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene54502 | MS.gene000529 | PPI |
| MS.gene000529 | MS.gene062296 | PPI |
| MS.gene065500 | MS.gene000529 | PPI |
| MS.gene000529 | MS.gene76933 | PPI |
| MS.gene000529 | MS.gene94431 | PPI |
| MS.gene000529 | MS.gene038413 | PPI |
| MS.gene000529 | MS.gene76929 | PPI |
| MS.gene017178 | MS.gene000529 | PPI |
| MS.gene80949 | MS.gene000529 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000529.t1 | MTR_8g096320 | 99.216 | 255 | 2 | 0 | 1 | 255 | 1 | 255 | 0.0 | 499 |
| MS.gene000529.t1 | MTR_8g096320 | 99.000 | 200 | 2 | 0 | 56 | 255 | 1 | 200 | 1.94e-140 | 392 |
| MS.gene000529.t1 | MTR_3g098910 | 50.794 | 252 | 117 | 4 | 1 | 246 | 1 | 251 | 4.55e-87 | 261 |
| MS.gene000529.t1 | MTR_3g098930 | 64.550 | 189 | 66 | 1 | 6 | 194 | 7 | 194 | 1.62e-86 | 256 |
| MS.gene000529.t1 | MTR_7g405710 | 57.870 | 216 | 90 | 1 | 1 | 216 | 1 | 215 | 4.75e-83 | 250 |
| MS.gene000529.t1 | MTR_7g007490 | 53.478 | 230 | 106 | 1 | 2 | 231 | 3 | 231 | 5.83e-82 | 246 |
| MS.gene000529.t1 | MTR_5g067530 | 56.604 | 212 | 91 | 1 | 5 | 216 | 6 | 216 | 6.05e-82 | 247 |
| MS.gene000529.t1 | MTR_7g405730 | 56.481 | 216 | 93 | 1 | 1 | 216 | 1 | 215 | 7.75e-81 | 244 |
| MS.gene000529.t1 | MTR_5g092600 | 52.703 | 222 | 103 | 2 | 11 | 232 | 12 | 231 | 6.10e-79 | 238 |
| MS.gene000529.t1 | MTR_8g096310 | 47.479 | 238 | 120 | 4 | 5 | 238 | 4 | 240 | 5.92e-71 | 219 |
| MS.gene000529.t1 | MTR_2g007890 | 49.524 | 210 | 104 | 1 | 1 | 210 | 4 | 211 | 1.48e-67 | 211 |
| MS.gene000529.t1 | MTR_2g436310 | 43.182 | 220 | 124 | 1 | 9 | 228 | 5 | 223 | 3.48e-52 | 170 |
| MS.gene000529.t1 | MTR_3g080990 | 40.930 | 215 | 126 | 1 | 4 | 217 | 3 | 217 | 1.12e-45 | 154 |
| MS.gene000529.t1 | MTR_6g007633 | 43.842 | 203 | 110 | 3 | 11 | 210 | 10 | 211 | 1.76e-45 | 152 |
| MS.gene000529.t1 | MTR_6g007637 | 41.204 | 216 | 123 | 3 | 1 | 213 | 1 | 215 | 4.47e-45 | 152 |
| MS.gene000529.t1 | MTR_8g099730 | 38.235 | 238 | 144 | 3 | 11 | 246 | 20 | 256 | 6.60e-45 | 152 |
| MS.gene000529.t1 | MTR_3g089125 | 37.281 | 228 | 135 | 5 | 11 | 233 | 7 | 231 | 3.62e-44 | 149 |
| MS.gene000529.t1 | MTR_6g007623 | 41.546 | 207 | 115 | 5 | 11 | 213 | 7 | 211 | 2.50e-42 | 144 |
| MS.gene000529.t1 | MTR_8g042490 | 38.164 | 207 | 124 | 3 | 13 | 217 | 18 | 222 | 8.04e-41 | 140 |
| MS.gene000529.t1 | MTR_1g029380 | 35.294 | 221 | 139 | 3 | 10 | 228 | 6 | 224 | 9.49e-40 | 138 |
| MS.gene000529.t1 | MTR_1g028460 | 31.390 | 223 | 150 | 1 | 6 | 225 | 3 | 225 | 2.18e-36 | 129 |
| MS.gene000529.t1 | MTR_2g073190 | 33.803 | 213 | 135 | 4 | 13 | 222 | 18 | 227 | 1.08e-33 | 129 |
| MS.gene000529.t1 | MTR_3g090950 | 30.508 | 236 | 151 | 4 | 13 | 240 | 10 | 240 | 3.77e-33 | 121 |
| MS.gene000529.t1 | MTR_3g090940 | 30.833 | 240 | 159 | 4 | 6 | 240 | 3 | 240 | 2.83e-32 | 119 |
| MS.gene000529.t1 | MTR_4g106990 | 36.649 | 191 | 118 | 2 | 29 | 217 | 35 | 224 | 4.80e-32 | 118 |
| MS.gene000529.t1 | MTR_8g099730 | 35.233 | 193 | 122 | 3 | 56 | 246 | 1 | 192 | 1.47e-28 | 107 |
| MS.gene000529.t1 | MTR_6g007610 | 31.628 | 215 | 128 | 5 | 11 | 211 | 10 | 219 | 5.48e-26 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000529.t1 | AT5G50800 | 57.676 | 241 | 100 | 2 | 1 | 240 | 1 | 240 | 3.55e-94 | 279 |
| MS.gene000529.t1 | AT5G50790 | 53.689 | 244 | 109 | 4 | 1 | 242 | 1 | 242 | 2.34e-91 | 271 |
| MS.gene000529.t1 | AT3G48740 | 54.918 | 244 | 101 | 4 | 4 | 242 | 6 | 245 | 5.49e-88 | 263 |
| MS.gene000529.t1 | AT5G23660 | 54.545 | 242 | 105 | 3 | 4 | 242 | 6 | 245 | 1.27e-87 | 262 |
| MS.gene000529.t1 | AT5G13170 | 55.963 | 218 | 91 | 3 | 9 | 225 | 11 | 224 | 5.30e-85 | 255 |
| MS.gene000529.t1 | AT4G25010 | 52.245 | 245 | 116 | 1 | 1 | 244 | 1 | 245 | 7.74e-85 | 254 |
| MS.gene000529.t1 | AT2G39060 | 49.772 | 219 | 108 | 2 | 9 | 227 | 9 | 225 | 5.36e-75 | 229 |
| MS.gene000529.t1 | AT4G15920 | 42.925 | 212 | 119 | 2 | 9 | 219 | 5 | 215 | 1.26e-53 | 174 |
| MS.gene000529.t1 | AT3G16690 | 41.589 | 214 | 123 | 2 | 9 | 221 | 5 | 217 | 1.67e-53 | 173 |
| MS.gene000529.t1 | AT3G16690 | 41.589 | 214 | 123 | 2 | 9 | 221 | 40 | 252 | 2.41e-53 | 174 |
| MS.gene000529.t1 | AT5G40260 | 40.444 | 225 | 129 | 5 | 10 | 230 | 9 | 232 | 2.53e-46 | 155 |
| MS.gene000529.t1 | AT5G62850 | 39.524 | 210 | 122 | 4 | 11 | 217 | 10 | 217 | 2.66e-45 | 152 |
| MS.gene000529.t1 | AT1G21460 | 36.771 | 223 | 135 | 4 | 11 | 230 | 7 | 226 | 6.48e-42 | 144 |
| MS.gene000529.t1 | AT4G10850 | 37.273 | 220 | 134 | 4 | 11 | 227 | 12 | 230 | 1.13e-41 | 143 |
| MS.gene000529.t1 | AT5G53190 | 34.728 | 239 | 142 | 4 | 13 | 247 | 10 | 238 | 2.98e-41 | 142 |
| MS.gene000529.t1 | AT5G40260 | 42.781 | 187 | 103 | 4 | 10 | 192 | 9 | 195 | 9.59e-40 | 137 |
| MS.gene000529.t1 | AT3G14770 | 35.885 | 209 | 129 | 4 | 11 | 216 | 16 | 222 | 6.63e-38 | 133 |
| MS.gene000529.t1 | AT1G66770 | 34.928 | 209 | 134 | 2 | 11 | 217 | 12 | 220 | 1.36e-37 | 133 |
| MS.gene000529.t1 | AT5G62850 | 38.919 | 185 | 108 | 4 | 11 | 192 | 10 | 192 | 1.22e-36 | 129 |
| MS.gene000529.t1 | AT3G28007 | 36.538 | 208 | 129 | 3 | 13 | 218 | 12 | 218 | 4.00e-34 | 124 |
| MS.gene000529.t1 | AT1G21460 | 37.113 | 194 | 116 | 4 | 11 | 201 | 7 | 197 | 1.53e-33 | 120 |
| MS.gene000529.t1 | AT3G16690 | 37.671 | 146 | 89 | 2 | 9 | 153 | 5 | 149 | 3.45e-25 | 99.0 |
Find 59 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTATACCCTTTGTTTCTT+TGG | 0.191930 | 4.3:+6855338 | None:intergenic |
| CTTCTCTTGCTGAATGTGTT+TGG | 0.204848 | 4.3:-6855176 | MS.gene000529:CDS |
| GTTTCTTTGGGGCATAAATT+AGG | 0.220003 | 4.3:+6855351 | None:intergenic |
| AACAATTCCAAAAGTGTTAA+TGG | 0.230115 | 4.3:+6855400 | None:intergenic |
| CTTATCACCATTAACACTTT+TGG | 0.238695 | 4.3:-6855407 | MS.gene000529:CDS |
| TGTATACCCTTTGTTTCTTT+GGG | 0.245646 | 4.3:+6855339 | None:intergenic |
| GAAATCTGCTGAGGGATTTC+AGG | 0.262581 | 4.3:-6855510 | MS.gene000529:CDS |
| TTCTCTTGCTGAATGTGTTT+GGG | 0.283443 | 4.3:-6855175 | MS.gene000529:CDS |
| TCTTCTATGGCCTTCTCCTC+AGG | 0.284550 | 4.3:-6854817 | MS.gene000529:CDS |
| TTGCTGAATGTGTTTGGGTT+TGG | 0.294795 | 4.3:-6855170 | MS.gene000529:CDS |
| GCTGTTATGTGGTTCTTCTA+TGG | 0.316301 | 4.3:-6854830 | MS.gene000529:CDS |
| ATAATTGATGTTGTGAAGAT+TGG | 0.346357 | 4.3:-6854415 | MS.gene000529:CDS |
| TGGCCATGACTCGTGAATCT+TGG | 0.380436 | 4.3:-6856190 | MS.gene000529:CDS |
| CTCAACTCTTGACCCTTCAT+TGG | 0.382813 | 4.3:+6854448 | None:intergenic |
| GGCACCTCCACCTGCACGAT+TGG | 0.385028 | 4.3:+6854384 | None:intergenic |
| GGCCATGACTCGTGAATCTT+GGG | 0.392828 | 4.3:-6856189 | MS.gene000529:CDS |
| GCACCTCCACCTGCACGATT+GGG | 0.405651 | 4.3:+6854385 | None:intergenic |
| AACACACTTGGATTTGTGTT+CGG | 0.406416 | 4.3:-6854529 | MS.gene000529:CDS |
| GAACCACATAACAGCATTGA+TGG | 0.426987 | 4.3:+6854838 | None:intergenic |
| AACACAAATCCAAGTGTGTT+TGG | 0.437116 | 4.3:+6854532 | None:intergenic |
| CTGAAAAGTGCCACAACATA+AGG | 0.441782 | 4.3:+6855482 | None:intergenic |
| CTTCTATGGCCTTCTCCTCA+GGG | 0.446491 | 4.3:-6854816 | MS.gene000529:CDS |
| TTCATTGGTGCCTCTACCAC+TGG | 0.452643 | 4.3:+6854463 | None:intergenic |
| GCAAAACGTCTTGCTATCAT+AGG | 0.455733 | 4.3:-6855110 | MS.gene000529:CDS |
| AGTGGTAGAGGCACCAATGA+AGG | 0.486721 | 4.3:-6854461 | MS.gene000529:CDS |
| TAACCATCAATGCTGTTATG+TGG | 0.489473 | 4.3:-6854841 | MS.gene000529:CDS |
| TCAGGCACTTCCTTATGTTG+TGG | 0.494964 | 4.3:-6855492 | MS.gene000529:CDS |
| CATAGTAATCCCTGAGGAGA+AGG | 0.500559 | 4.3:+6854807 | None:intergenic |
| AGGCAACATCATTTCCTTTG+CGG | 0.507976 | 4.3:-6855668 | MS.gene000529:CDS |
| GTATACCCTTTGTTTCTTTG+GGG | 0.510779 | 4.3:+6855340 | None:intergenic |
| CCATGCAGAGCAAAGTCATA+AGG | 0.515167 | 4.3:-6854907 | MS.gene000529:intron |
| GACCCCAATCGTGCAGGTGG+AGG | 0.519554 | 4.3:-6854388 | MS.gene000529:CDS |
| AAATGCTACACCAGTGGTAG+AGG | 0.532746 | 4.3:-6854473 | MS.gene000529:CDS |
| AGCCCAAGATTCACGAGTCA+TGG | 0.538849 | 4.3:+6856187 | None:intergenic |
| TCAACTCTCTACCTCTCAAA+GGG | 0.539975 | 4.3:-6855134 | MS.gene000529:CDS |
| TTAAAATCAGACTTTGCTAA+CGG | 0.544654 | 4.3:+6854363 | None:intergenic |
| TTCAAGAAGAAATCTGCTGA+GGG | 0.551711 | 4.3:-6855518 | MS.gene000529:CDS |
| TGTGTTCGGCATAATTCAGA+TGG | 0.552676 | 4.3:-6854515 | MS.gene000529:CDS |
| ATCAACTCTCTACCTCTCAA+AGG | 0.553313 | 4.3:-6855135 | MS.gene000529:CDS |
| GGAAACGACCCCAATCGTGC+AGG | 0.560744 | 4.3:-6854394 | MS.gene000529:CDS |
| TTTATGCCCCAAAGAAACAA+AGG | 0.567569 | 4.3:-6855346 | MS.gene000529:CDS |
| AACGACCCCAATCGTGCAGG+TGG | 0.576027 | 4.3:-6854391 | MS.gene000529:CDS |
| TTATGCCCCAAAGAAACAAA+GGG | 0.578048 | 4.3:-6855345 | MS.gene000529:intron |
| AACGTCTTGCTATCATAGGA+TGG | 0.590309 | 4.3:-6855106 | MS.gene000529:CDS |
| GTGGTAGAGGCACCAATGAA+GGG | 0.591402 | 4.3:-6854460 | MS.gene000529:CDS |
| ATGCAGCTACCAAACACACT+TGG | 0.593312 | 4.3:-6854541 | MS.gene000529:intron |
| CTTCAAGAAGAAATCTGCTG+AGG | 0.593379 | 4.3:-6855519 | MS.gene000529:CDS |
| CACCTCCACCTGCACGATTG+GGG | 0.600426 | 4.3:+6854386 | None:intergenic |
| CAAACACATTCAGCAAGAGA+AGG | 0.625179 | 4.3:+6855177 | None:intergenic |
| GTAGAGAGTTGATAGAAGCA+TGG | 0.638407 | 4.3:+6855145 | None:intergenic |
| ATACTTACAATGACGAAGAG+AGG | 0.639522 | 4.3:+6855047 | None:intergenic |
| ATACACTTATGTTGAAAACA+AGG | 0.640633 | 4.3:+6855078 | None:intergenic |
| TGGTGAGAGGAACACCGCAA+AGG | 0.662139 | 4.3:+6855654 | None:intergenic |
| GTTCGGCATAATTCAGATGG+TGG | 0.664212 | 4.3:-6854512 | MS.gene000529:CDS |
| TGGTTACTTACAATGGTGAG+AGG | 0.666494 | 4.3:+6855641 | None:intergenic |
| AAGGGTCAAGAGTTGAGTGG+TGG | 0.679444 | 4.3:-6854442 | MS.gene000529:CDS |
| ATATAGAAATGCTACACCAG+TGG | 0.694135 | 4.3:-6854479 | MS.gene000529:CDS |
| ATGAAGGGTCAAGAGTTGAG+TGG | 0.696772 | 4.3:-6854445 | MS.gene000529:CDS |
| CGGCAACATAGTAATCCCTG+AGG | 0.770046 | 4.3:+6854801 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATCAAATATATATGT+AGG | - | chr4.3:6854795-6854814 | MS.gene000529:intron | 10.0% |
| !!! | TAGTAAAGTTTTTTTTTATA+AGG | + | chr4.3:6855298-6855317 | None:intergenic | 10.0% |
| !! | AATAACGTAATTAAGAAAAT+TGG | + | chr4.3:6855966-6855985 | None:intergenic | 15.0% |
| !! | ATATATACATATATACGTTT+AGG | + | chr4.3:6854991-6855010 | None:intergenic | 15.0% |
| !! | ATCAAATACTATAAAGTTAA+AGG | + | chr4.3:6855844-6855863 | None:intergenic | 15.0% |
| !! | TAATTTACAAGAAAACAAAA+TGG | + | chr4.3:6854942-6854961 | None:intergenic | 15.0% |
| !! | TCAAATACTATAAAGTTAAA+GGG | + | chr4.3:6855843-6855862 | None:intergenic | 15.0% |
| !!! | ATTATATGAATATTGACTTA+CGG | + | chr4.3:6855782-6855801 | None:intergenic | 15.0% |
| !!! | ATTTTAATTAGCATGTTAAT+TGG | - | chr4.3:6854670-6854689 | MS.gene000529:intron | 15.0% |
| !! | ATGTATATATTTGTATATGC+AGG | - | chr4.3:6855001-6855020 | MS.gene000529:intron | 20.0% |
| !!! | AAAAGCTAACGTTAAATTTT+AGG | + | chr4.3:6854624-6854643 | None:intergenic | 20.0% |
| !!! | ATTGAATCTTTTCTTCTTTT+TGG | - | chr4.3:6855991-6856010 | MS.gene000529:intron | 20.0% |
| !!! | ATTTTACTCTAAAGAACATT+TGG | + | chr4.3:6854652-6854671 | None:intergenic | 20.0% |
| !!! | TTCTAGTTTCTTTTTATAAG+CGG | - | chr4.3:6854547-6854566 | MS.gene000529:intron | 20.0% |
| ! | AAAAAGAAGGACAAGAAAAA+TGG | + | chr4.3:6855700-6855719 | None:intergenic | 25.0% |
| ! | AACAAAATGGTTACTTACAA+TGG | + | chr4.3:6854929-6854948 | None:intergenic | 25.0% |
| ! | AATAATATATGCATGGCTTA+TGG | + | chr4.3:6854438-6854457 | None:intergenic | 25.0% |
| ! | AATCTGTATGTATGTTAACA+CGG | + | chr4.3:6854698-6854717 | None:intergenic | 25.0% |
| ! | ACGTAATTAAGAAAATTGGT+AGG | + | chr4.3:6855962-6855981 | None:intergenic | 25.0% |
| ! | ATAATTGATGTTGTGAAGAT+TGG | - | chr4.3:6856145-6856164 | MS.gene000529:intron | 25.0% |
| ! | ATACACTTATGTTGAAAACA+AGG | + | chr4.3:6855485-6855504 | None:intergenic | 25.0% |
| ! | CATACAAAGTACAAACAAAT+GGG | + | chr4.3:6855812-6855831 | None:intergenic | 25.0% |
| ! | CGTAATTAAGAAAATTGGTA+GGG | + | chr4.3:6855961-6855980 | None:intergenic | 25.0% |
| ! | GAAAAGCAATAATATATGCA+TGG | + | chr4.3:6854445-6854464 | None:intergenic | 25.0% |
| ! | GAAGATGATATTGATGAATA+AGG | + | chr4.3:6854530-6854549 | None:intergenic | 25.0% |
| ! | GTAATTAAGAAAATTGGTAG+GGG | + | chr4.3:6855960-6855979 | None:intergenic | 25.0% |
| ! | TATCACTTGCTCATTTAATT+GGG | + | chr4.3:6855601-6855620 | None:intergenic | 25.0% |
| ! | TTATCACTTGCTCATTTAAT+TGG | + | chr4.3:6855602-6855621 | None:intergenic | 25.0% |
| ! | TTGAAGATTACGTAAAAAGT+TGG | + | chr4.3:6855027-6855046 | None:intergenic | 25.0% |
| ! | TTTAATGTGCTTCATTAATG+TGG | - | chr4.3:6855897-6855916 | MS.gene000529:intron | 25.0% |
| !!! | AACAATTCCAAAAGTGTTAA+TGG | + | chr4.3:6855163-6855182 | None:intergenic | 25.0% |
| !!! | CTTTTTGTCATTGTTTTTAC+AGG | - | chr4.3:6854872-6854891 | MS.gene000529:CDS | 25.0% |
| AGAAACATCTAAGTGCTATA+TGG | - | chr4.3:6855933-6855952 | MS.gene000529:intron | 30.0% | |
| CCATACAAAGTACAAACAAA+TGG | + | chr4.3:6855813-6855832 | None:intergenic | 30.0% | |
| CCATTTGTTTGTACTTTGTA+TGG | - | chr4.3:6855810-6855829 | MS.gene000529:intron | 30.0% | |
| TAACATACATACAGATTGCA+TGG | - | chr4.3:6854701-6854720 | MS.gene000529:intron | 30.0% | |
| TGATATTGATGAATAAGGAG+AGG | + | chr4.3:6854525-6854544 | None:intergenic | 30.0% | |
| ! | ATGTATACCCTTTGTTTCTT+TGG | + | chr4.3:6855225-6855244 | None:intergenic | 30.0% |
| ! | CACTTAGATGTTTCTTTTCA+TGG | + | chr4.3:6855928-6855947 | None:intergenic | 30.0% |
| ! | CTTATCACCATTAACACTTT+TGG | - | chr4.3:6855153-6855172 | MS.gene000529:CDS | 30.0% |
| ! | TGTATACCCTTTGTTTCTTT+GGG | + | chr4.3:6855224-6855243 | None:intergenic | 30.0% |
| !! | AGCATTGATGGTTAAAAAGA+AGG | + | chr4.3:6855713-6855732 | None:intergenic | 30.0% |
| !! | ATCTAGTTTGTTATGCTTGT+TGG | - | chr4.3:6854579-6854598 | MS.gene000529:intron | 30.0% |
| AACACAAATCCAAGTGTGTT+TGG | + | chr4.3:6856031-6856050 | None:intergenic | 35.0% | |
| AACACACTTGGATTTGTGTT+CGG | - | chr4.3:6856031-6856050 | MS.gene000529:intron | 35.0% | |
| ATACTTACAATGACGAAGAG+AGG | + | chr4.3:6855516-6855535 | None:intergenic | 35.0% | |
| ATATAGAAATGCTACACCAG+TGG | - | chr4.3:6856081-6856100 | MS.gene000529:intron | 35.0% | |
| TAACCATCAATGCTGTTATG+TGG | - | chr4.3:6855719-6855738 | MS.gene000529:intron | 35.0% | |
| TTATGCCCCAAAGAAACAAA+GGG | - | chr4.3:6855215-6855234 | MS.gene000529:intron | 35.0% | |
| TTCAAGAAGAAATCTGCTGA+GGG | - | chr4.3:6855042-6855061 | MS.gene000529:intron | 35.0% | |
| TTCTCTTGCTGAATGTGTTT+GGG | - | chr4.3:6855385-6855404 | MS.gene000529:CDS | 35.0% | |
| TTTATGCCCCAAAGAAACAA+AGG | - | chr4.3:6855214-6855233 | MS.gene000529:intron | 35.0% | |
| ! | AGCAGATTCTCTTTTGACAA+AGG | + | chr4.3:6855127-6855146 | None:intergenic | 35.0% |
| ! | GTATACCCTTTGTTTCTTTG+GGG | + | chr4.3:6855223-6855242 | None:intergenic | 35.0% |
| !! | CATTTGTTAACAAGTGCTGA+TGG | - | chr4.3:6854834-6854853 | MS.gene000529:CDS | 35.0% |
| !! | GTTTCTTTGGGGCATAAATT+AGG | + | chr4.3:6855212-6855231 | None:intergenic | 35.0% |
| !!! | GAATCTTGGGCTTTTGTTTT+CGG | - | chr4.3:6854384-6854403 | MS.gene000529:CDS | 35.0% |
| !!! | GCTTTTGTTTTCGGCATTAT+AGG | - | chr4.3:6854393-6854412 | MS.gene000529:CDS | 35.0% |
| AGGCAACATCATTTCCTTTG+CGG | - | chr4.3:6854892-6854911 | MS.gene000529:CDS | 40.0% | |
| ATACAGATTGCATGGCGATA+TGG | - | chr4.3:6854709-6854728 | MS.gene000529:intron | 40.0% | |
| ATCAACTCTCTACCTCTCAA+AGG | - | chr4.3:6855425-6855444 | MS.gene000529:CDS | 40.0% | |
| CAAACACATTCAGCAAGAGA+AGG | + | chr4.3:6855386-6855405 | None:intergenic | 40.0% | |
| CTTCAAGAAGAAATCTGCTG+AGG | - | chr4.3:6855041-6855060 | MS.gene000529:intron | 40.0% | |
| CTTCTCTTGCTGAATGTGTT+TGG | - | chr4.3:6855384-6855403 | MS.gene000529:CDS | 40.0% | |
| GCTGTTATGTGGTTCTTCTA+TGG | - | chr4.3:6855730-6855749 | MS.gene000529:intron | 40.0% | |
| TCAACTCTCTACCTCTCAAA+GGG | - | chr4.3:6855426-6855445 | MS.gene000529:CDS | 40.0% | |
| TGGTTACTTACAATGGTGAG+AGG | + | chr4.3:6854922-6854941 | None:intergenic | 40.0% | |
| TGTGTTCGGCATAATTCAGA+TGG | - | chr4.3:6856045-6856064 | MS.gene000529:intron | 40.0% | |
| ! | AACGTCTTGCTATCATAGGA+TGG | - | chr4.3:6855454-6855473 | MS.gene000529:CDS | 40.0% |
| ! | CACTTTTCAGTGCAATGCTT+TGG | - | chr4.3:6855091-6855110 | MS.gene000529:CDS | 40.0% |
| ! | CAGCAAGAGAAGGAGTTTTA+TGG | + | chr4.3:6855376-6855395 | None:intergenic | 40.0% |
| ! | GAACCACATAACAGCATTGA+TGG | + | chr4.3:6855725-6855744 | None:intergenic | 40.0% |
| ! | GCAAAACGTCTTGCTATCAT+AGG | - | chr4.3:6855450-6855469 | MS.gene000529:CDS | 40.0% |
| ! | TTGCTGAATGTGTTTGGGTT+TGG | - | chr4.3:6855390-6855409 | MS.gene000529:CDS | 40.0% |
| !! | CTGAAAAGTGCCACAACATA+AGG | + | chr4.3:6855081-6855100 | None:intergenic | 40.0% |
| !! | GTAGAGAGTTGATAGAAGCA+TGG | + | chr4.3:6855418-6855437 | None:intergenic | 40.0% |
| AAATGCTACACCAGTGGTAG+AGG | - | chr4.3:6856087-6856106 | MS.gene000529:intron | 45.0% | |
| ATGAAGGGTCAAGAGTTGAG+TGG | - | chr4.3:6856115-6856134 | MS.gene000529:intron | 45.0% | |
| ATGCAGCTACCAAACACACT+TGG | - | chr4.3:6856019-6856038 | MS.gene000529:intron | 45.0% | |
| CATAGTAATCCCTGAGGAGA+AGG | + | chr4.3:6855756-6855775 | None:intergenic | 45.0% | |
| CCATGCAGAGCAAAGTCATA+AGG | - | chr4.3:6855653-6855672 | MS.gene000529:CDS | 45.0% | |
| CCTTATGACTTTGCTCTGCA+TGG | + | chr4.3:6855656-6855675 | None:intergenic | 45.0% | |
| CTCAACTCTTGACCCTTCAT+TGG | + | chr4.3:6856115-6856134 | None:intergenic | 45.0% | |
| GAAATCTGCTGAGGGATTTC+AGG | - | chr4.3:6855050-6855069 | MS.gene000529:intron | 45.0% | |
| GTTCGGCATAATTCAGATGG+TGG | - | chr4.3:6856048-6856067 | MS.gene000529:intron | 45.0% | |
| TCAGGCACTTCCTTATGTTG+TGG | - | chr4.3:6855068-6855087 | MS.gene000529:CDS | 45.0% | |
| AAGGGTCAAGAGTTGAGTGG+TGG | - | chr4.3:6856118-6856137 | MS.gene000529:intron | 50.0% | |
| AGCCCAAGATTCACGAGTCA+TGG | + | chr4.3:6854376-6854395 | None:intergenic | 50.0% | |
| CGGCAACATAGTAATCCCTG+AGG | + | chr4.3:6855762-6855781 | None:intergenic | 50.0% | |
| CTTCTATGGCCTTCTCCTCA+GGG | - | chr4.3:6855744-6855763 | MS.gene000529:intron | 50.0% | |
| GGCCATGACTCGTGAATCTT+GGG | - | chr4.3:6854371-6854390 | MS.gene000529:CDS | 50.0% | |
| TCTTCTATGGCCTTCTCCTC+AGG | - | chr4.3:6855743-6855762 | MS.gene000529:intron | 50.0% | |
| TGGCCATGACTCGTGAATCT+TGG | - | chr4.3:6854370-6854389 | MS.gene000529:CDS | 50.0% | |
| ! | GACGTTTTGCTCCCTTTGAG+AGG | + | chr4.3:6855440-6855459 | None:intergenic | 50.0% |
| ! | TTCATTGGTGCCTCTACCAC+TGG | + | chr4.3:6856100-6856119 | None:intergenic | 50.0% |
| !! | AGTGGTAGAGGCACCAATGA+AGG | - | chr4.3:6856099-6856118 | MS.gene000529:intron | 50.0% |
| !! | GTGGTAGAGGCACCAATGAA+GGG | - | chr4.3:6856100-6856119 | MS.gene000529:intron | 50.0% |
| TGGTGAGAGGAACACCGCAA+AGG | + | chr4.3:6854909-6854928 | None:intergenic | 55.0% | |
| AACGACCCCAATCGTGCAGG+TGG | - | chr4.3:6856169-6856188 | MS.gene000529:CDS | 60.0% | |
| CACCTCCACCTGCACGATTG+GGG | + | chr4.3:6856177-6856196 | None:intergenic | 60.0% | |
| GCACCTCCACCTGCACGATT+GGG | + | chr4.3:6856178-6856197 | None:intergenic | 60.0% | |
| GGAAACGACCCCAATCGTGC+AGG | - | chr4.3:6856166-6856185 | MS.gene000529:intron | 60.0% | |
| GACCCCAATCGTGCAGGTGG+AGG | - | chr4.3:6856172-6856191 | MS.gene000529:CDS | 65.0% | |
| GGCACCTCCACCTGCACGAT+TGG | + | chr4.3:6856179-6856198 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 6854369 | 6856213 | 6854369 | ID=MS.gene000529 |
| chr4.3 | mRNA | 6854369 | 6856213 | 6854369 | ID=MS.gene000529.t1;Parent=MS.gene000529 |
| chr4.3 | exon | 6856168 | 6856213 | 6856168 | ID=MS.gene000529.t1.exon1;Parent=MS.gene000529.t1 |
| chr4.3 | CDS | 6856168 | 6856213 | 6856168 | ID=cds.MS.gene000529.t1;Parent=MS.gene000529.t1 |
| chr4.3 | exon | 6855652 | 6855688 | 6855652 | ID=MS.gene000529.t1.exon2;Parent=MS.gene000529.t1 |
| chr4.3 | CDS | 6855652 | 6855688 | 6855652 | ID=cds.MS.gene000529.t1;Parent=MS.gene000529.t1 |
| chr4.3 | exon | 6855346 | 6855559 | 6855346 | ID=MS.gene000529.t1.exon3;Parent=MS.gene000529.t1 |
| chr4.3 | CDS | 6855346 | 6855559 | 6855346 | ID=cds.MS.gene000529.t1;Parent=MS.gene000529.t1 |
| chr4.3 | exon | 6855055 | 6855216 | 6855055 | ID=MS.gene000529.t1.exon4;Parent=MS.gene000529.t1 |
| chr4.3 | CDS | 6855055 | 6855216 | 6855055 | ID=cds.MS.gene000529.t1;Parent=MS.gene000529.t1 |
| chr4.3 | exon | 6854802 | 6854921 | 6854802 | ID=MS.gene000529.t1.exon5;Parent=MS.gene000529.t1 |
| chr4.3 | CDS | 6854802 | 6854921 | 6854802 | ID=cds.MS.gene000529.t1;Parent=MS.gene000529.t1 |
| chr4.3 | exon | 6854369 | 6854557 | 6854369 | ID=MS.gene000529.t1.exon6;Parent=MS.gene000529.t1 |
| chr4.3 | CDS | 6854369 | 6854557 | 6854369 | ID=cds.MS.gene000529.t1;Parent=MS.gene000529.t1 |
| Gene Sequence |
| Protein sequence |
