Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062296.t1 | XP_003617528.1 | 94.3 | 228 | 13 | 0 | 1 | 228 | 1 | 228 | 6.80E-110 | 406.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062296.t1 | Q9ZV02 | 55.5 | 220 | 96 | 2 | 8 | 226 | 7 | 225 | 4.3e-60 | 232.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062296.t1 | G7K8I6 | 94.3 | 228 | 13 | 0 | 1 | 228 | 1 | 228 | 4.9e-110 | 406.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene044269 | MS.gene062296 | PPI |
MS.gene000529 | MS.gene062296 | PPI |
MS.gene063278 | MS.gene062296 | PPI |
MS.gene90281 | MS.gene062296 | PPI |
MS.gene062296 | MS.gene46188 | PPI |
MS.gene69746 | MS.gene062296 | PPI |
MS.gene70529 | MS.gene062296 | PPI |
MS.gene030474 | MS.gene062296 | PPI |
MS.gene25769 | MS.gene062296 | PPI |
MS.gene79463 | MS.gene062296 | PPI |
MS.gene55828 | MS.gene062296 | PPI |
MS.gene048962 | MS.gene062296 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062296.t1 | MTR_5g092600 | 94.298 | 228 | 13 | 0 | 1 | 228 | 1 | 228 | 3.90e-154 | 428 |
MS.gene062296.t1 | MTR_7g007490 | 81.223 | 229 | 42 | 1 | 1 | 228 | 1 | 229 | 2.50e-128 | 362 |
MS.gene062296.t1 | MTR_8g096320 | 53.670 | 218 | 99 | 2 | 12 | 227 | 11 | 228 | 1.14e-78 | 237 |
MS.gene062296.t1 | MTR_5g067530 | 50.926 | 216 | 105 | 1 | 1 | 215 | 1 | 216 | 2.06e-72 | 221 |
MS.gene062296.t1 | MTR_7g405710 | 52.489 | 221 | 104 | 1 | 5 | 224 | 4 | 224 | 4.46e-71 | 218 |
MS.gene062296.t1 | MTR_7g405730 | 53.302 | 212 | 98 | 1 | 5 | 215 | 4 | 215 | 5.47e-71 | 218 |
MS.gene062296.t1 | MTR_2g007890 | 50.230 | 217 | 103 | 3 | 9 | 221 | 11 | 226 | 8.23e-68 | 210 |
MS.gene062296.t1 | MTR_3g098910 | 49.268 | 205 | 102 | 2 | 14 | 216 | 13 | 217 | 5.60e-67 | 209 |
MS.gene062296.t1 | MTR_8g096310 | 44.498 | 209 | 114 | 2 | 10 | 216 | 9 | 217 | 1.74e-59 | 189 |
MS.gene062296.t1 | MTR_8g096320 | 52.601 | 173 | 81 | 1 | 56 | 227 | 1 | 173 | 3.49e-58 | 183 |
MS.gene062296.t1 | MTR_3g098930 | 50.000 | 186 | 89 | 4 | 12 | 194 | 12 | 196 | 3.37e-56 | 178 |
MS.gene062296.t1 | MTR_2g436310 | 37.838 | 222 | 131 | 2 | 13 | 227 | 8 | 229 | 1.15e-49 | 162 |
MS.gene062296.t1 | MTR_1g029380 | 42.584 | 209 | 113 | 3 | 24 | 228 | 20 | 225 | 4.06e-49 | 161 |
MS.gene062296.t1 | MTR_3g089125 | 42.512 | 207 | 111 | 3 | 24 | 228 | 20 | 220 | 4.28e-49 | 161 |
MS.gene062296.t1 | MTR_6g007633 | 38.914 | 221 | 129 | 5 | 12 | 227 | 10 | 229 | 3.64e-43 | 145 |
MS.gene062296.t1 | MTR_8g099730 | 35.616 | 219 | 137 | 3 | 12 | 226 | 20 | 238 | 1.94e-42 | 144 |
MS.gene062296.t1 | MTR_6g007637 | 40.476 | 210 | 119 | 5 | 12 | 216 | 11 | 219 | 3.67e-42 | 143 |
MS.gene062296.t1 | MTR_3g080990 | 38.356 | 219 | 131 | 3 | 13 | 227 | 11 | 229 | 4.49e-42 | 144 |
MS.gene062296.t1 | MTR_6g007623 | 38.991 | 218 | 126 | 6 | 12 | 223 | 7 | 223 | 9.93e-42 | 142 |
MS.gene062296.t1 | MTR_8g042490 | 36.453 | 203 | 126 | 2 | 18 | 218 | 23 | 224 | 7.07e-37 | 129 |
MS.gene062296.t1 | MTR_1g028460 | 33.945 | 218 | 139 | 2 | 11 | 223 | 7 | 224 | 9.14e-36 | 127 |
MS.gene062296.t1 | MTR_2g073190 | 35.577 | 208 | 131 | 2 | 18 | 223 | 23 | 229 | 4.64e-34 | 129 |
MS.gene062296.t1 | MTR_4g106990 | 34.975 | 203 | 127 | 2 | 29 | 226 | 35 | 237 | 2.48e-32 | 117 |
MS.gene062296.t1 | MTR_3g090950 | 31.278 | 227 | 143 | 5 | 11 | 228 | 7 | 229 | 3.74e-32 | 117 |
MS.gene062296.t1 | MTR_3g090940 | 32.075 | 212 | 137 | 4 | 11 | 216 | 7 | 217 | 3.76e-31 | 115 |
MS.gene062296.t1 | MTR_8g099730 | 33.333 | 174 | 113 | 2 | 56 | 226 | 1 | 174 | 2.45e-29 | 108 |
MS.gene062296.t1 | MTR_6g007610 | 30.342 | 234 | 141 | 7 | 12 | 228 | 10 | 238 | 3.26e-24 | 96.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062296.t1 | AT2G39060 | 55.455 | 220 | 96 | 2 | 8 | 226 | 7 | 225 | 1.13e-75 | 229 |
MS.gene062296.t1 | AT5G13170 | 49.550 | 222 | 110 | 2 | 9 | 228 | 10 | 231 | 3.18e-74 | 227 |
MS.gene062296.t1 | AT5G50790 | 52.315 | 216 | 102 | 1 | 5 | 219 | 4 | 219 | 9.42e-73 | 223 |
MS.gene062296.t1 | AT3G48740 | 51.208 | 207 | 100 | 1 | 12 | 217 | 13 | 219 | 9.89e-71 | 218 |
MS.gene062296.t1 | AT5G23660 | 49.524 | 210 | 105 | 1 | 12 | 220 | 13 | 222 | 3.27e-69 | 214 |
MS.gene062296.t1 | AT5G50800 | 50.685 | 219 | 105 | 3 | 12 | 228 | 11 | 228 | 9.88e-69 | 213 |
MS.gene062296.t1 | AT4G25010 | 50.000 | 222 | 109 | 2 | 9 | 228 | 8 | 229 | 6.69e-67 | 208 |
MS.gene062296.t1 | AT1G21460 | 43.636 | 220 | 118 | 4 | 12 | 228 | 7 | 223 | 3.42e-51 | 166 |
MS.gene062296.t1 | AT4G15920 | 37.681 | 207 | 125 | 3 | 13 | 216 | 8 | 213 | 9.56e-47 | 155 |
MS.gene062296.t1 | AT3G16690 | 34.112 | 214 | 137 | 3 | 13 | 223 | 8 | 220 | 4.17e-43 | 145 |
MS.gene062296.t1 | AT3G16690 | 34.597 | 211 | 134 | 3 | 13 | 220 | 43 | 252 | 6.64e-43 | 146 |
MS.gene062296.t1 | AT5G40260 | 40.000 | 235 | 115 | 8 | 12 | 226 | 10 | 238 | 4.50e-42 | 143 |
MS.gene062296.t1 | AT4G10850 | 35.088 | 228 | 143 | 4 | 4 | 226 | 3 | 230 | 9.43e-42 | 142 |
MS.gene062296.t1 | AT5G62850 | 35.714 | 224 | 133 | 5 | 12 | 228 | 10 | 229 | 3.35e-41 | 140 |
MS.gene062296.t1 | AT5G53190 | 38.889 | 216 | 125 | 4 | 8 | 217 | 4 | 218 | 4.06e-41 | 141 |
MS.gene062296.t1 | AT1G21460 | 42.188 | 192 | 107 | 3 | 12 | 200 | 7 | 197 | 3.39e-40 | 137 |
MS.gene062296.t1 | AT1G66770 | 34.389 | 221 | 137 | 4 | 12 | 226 | 12 | 230 | 1.13e-35 | 127 |
MS.gene062296.t1 | AT5G40260 | 40.909 | 198 | 99 | 6 | 12 | 197 | 10 | 201 | 4.16e-35 | 124 |
MS.gene062296.t1 | AT3G14770 | 34.884 | 215 | 134 | 4 | 12 | 223 | 16 | 227 | 3.40e-33 | 120 |
MS.gene062296.t1 | AT5G62850 | 35.979 | 189 | 110 | 5 | 12 | 193 | 10 | 194 | 1.05e-30 | 113 |
MS.gene062296.t1 | AT3G28007 | 38.647 | 207 | 118 | 5 | 12 | 212 | 10 | 213 | 1.44e-30 | 113 |
MS.gene062296.t1 | AT3G16690 | 30.496 | 141 | 94 | 3 | 13 | 150 | 8 | 147 | 2.72e-18 | 80.1 |
Find 41 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACATTGTTATTTGTTTATTA+TGG | 0.184490 | 5.1:-73984083 | MS.gene062296:CDS |
TCTTAGCATTCTTGTATATT+AGG | 0.197181 | 5.1:+73982750 | None:intergenic |
TGCTGCTCCTTTAAGTATAA+TGG | 0.227004 | 5.1:-73983287 | MS.gene062296:intron |
CATATATGATGTACATTATT+AGG | 0.227731 | 5.1:+73983991 | None:intergenic |
GCAAATACCATTATACTTAA+AGG | 0.257369 | 5.1:+73983280 | None:intergenic |
CTTATCACAATCAATTCTAT+TGG | 0.293122 | 5.1:-73984035 | MS.gene062296:CDS |
TTTCTTGTAAATTGAATAGA+AGG | 0.294119 | 5.1:+73984157 | None:intergenic |
TCCTTCCGTGTTCAAGTTGT+GGG | 0.304618 | 5.1:-73983343 | MS.gene062296:CDS |
AATGGGTTGGGATTTCTATT+AGG | 0.308152 | 5.1:-73982794 | MS.gene062296:CDS |
CAATTCTATTGGATGTGTTA+TGG | 0.325357 | 5.1:-73984024 | MS.gene062296:CDS |
TGACAAGGATAAGTACATTA+TGG | 0.330649 | 5.1:-73982933 | MS.gene062296:intron |
ACCATCTTGAGATTAGAAAA+TGG | 0.338677 | 5.1:+73984667 | None:intergenic |
ATTGTGGACATAGGAGGTTT+TGG | 0.370193 | 5.1:-73983403 | MS.gene062296:CDS |
TTCTATTATTAGCTGCCAAA+TGG | 0.384265 | 5.1:-73982812 | MS.gene062296:intron |
CTAAGAAGTGTAACCACATA+TGG | 0.390300 | 5.1:+73984107 | None:intergenic |
TATTAGCTGCCAAATGGGTT+GGG | 0.425304 | 5.1:-73982806 | MS.gene062296:intron |
TTCCTTCCGTGTTCAAGTTG+TGG | 0.438689 | 5.1:-73983344 | MS.gene062296:CDS |
AGAAACAATGACAATGGAAA+TGG | 0.442224 | 5.1:+73982995 | None:intergenic |
AATAGAAATCCCAACCCATT+TGG | 0.446671 | 5.1:+73982797 | None:intergenic |
TCTATTATTAGCTGCCAAAT+GGG | 0.458759 | 5.1:-73982811 | MS.gene062296:intron |
TTATTAGCTGCCAAATGGGT+TGG | 0.471221 | 5.1:-73982807 | MS.gene062296:intron |
ATTTGTACTACTTTCAACAT+TGG | 0.476847 | 5.1:-73983316 | MS.gene062296:CDS |
GTTTCATTCAATCCCATATG+TGG | 0.477368 | 5.1:-73984120 | MS.gene062296:CDS |
TGAATTGCAGATATCCACTT+TGG | 0.495123 | 5.1:-73983437 | MS.gene062296:intron |
TTGATACTAATTGTGGACAT+AGG | 0.498447 | 5.1:-73983412 | MS.gene062296:CDS |
TGTACATCATATATGCTCCT+AGG | 0.524172 | 5.1:-73983983 | MS.gene062296:CDS |
TTGTAAATTGAATAGAAGGT+TGG | 0.536740 | 5.1:+73984161 | None:intergenic |
ATCACCACCTTCATTGTGAA+AGG | 0.537205 | 5.1:-73983367 | MS.gene062296:CDS |
TTACTATCTGCGCCACCATG+TGG | 0.563450 | 5.1:-73982973 | MS.gene062296:CDS |
ATACTAATTGTGGACATAGG+AGG | 0.571727 | 5.1:-73983409 | MS.gene062296:CDS |
TAAGAAGTGTAACCACATAT+GGG | 0.576058 | 5.1:+73984108 | None:intergenic |
CCCCACAACTTGAACACGGA+AGG | 0.579110 | 5.1:+73983342 | None:intergenic |
TTTCTATGGTCTCTTTGACA+AGG | 0.585997 | 5.1:-73982948 | MS.gene062296:CDS |
CCTTCCGTGTTCAAGTTGTG+GGG | 0.592412 | 5.1:-73983342 | MS.gene062296:CDS |
GAAGGAACCTTTCACAATGA+AGG | 0.595094 | 5.1:+73983360 | None:intergenic |
AATTAGTATCAAAACCAAAG+TGG | 0.598827 | 5.1:+73983423 | None:intergenic |
ATAGTAAGAAACAATGACAA+TGG | 0.604975 | 5.1:+73982989 | None:intergenic |
TTGATATACCTAGGAGACCA+AGG | 0.610831 | 5.1:+73984638 | None:intergenic |
ATATGCTCCTAGGAAGCTCA+AGG | 0.625074 | 5.1:-73983973 | MS.gene062296:intron |
GGAACCTTTCACAATGAAGG+TGG | 0.665031 | 5.1:+73983363 | None:intergenic |
TCAACCCCACAACTTGAACA+CGG | 0.685979 | 5.1:+73983338 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAAGAAAAATTCATTAAT+AGG | + | chr5.1:73984507-73984526 | None:intergenic | 10.0% |
!!! | AAGAAAGATTATTTTTATTA+TGG | + | chr5.1:73983444-73983463 | None:intergenic | 10.0% |
!!! | CATAAAATTATGATATTTTA+AGG | + | chr5.1:73984175-73984194 | None:intergenic | 10.0% |
!! | TACTTACTAAAATTAAAGAT+GGG | - | chr5.1:73983505-73983524 | MS.gene062296:intron | 15.0% |
!! | TCTATAATAATTTGAGAATA+TGG | + | chr5.1:73983795-73983814 | None:intergenic | 15.0% |
!! | TTAACTATATATCAGATTAA+TGG | + | chr5.1:73984142-73984161 | None:intergenic | 15.0% |
!! | TTACTTACTAAAATTAAAGA+TGG | - | chr5.1:73983504-73983523 | MS.gene062296:intron | 15.0% |
!!! | AATTTTTCTTTTATGATGTA+TGG | - | chr5.1:73984514-73984533 | MS.gene062296:intron | 15.0% |
!!! | ACATTGTTATTTGTTTATTA+TGG | - | chr5.1:73983302-73983321 | MS.gene062296:CDS | 15.0% |
!!! | ATGTTTAAGATGATTTATTT+AGG | - | chr5.1:73982844-73982863 | MS.gene062296:intron | 15.0% |
!!! | TAATTTTATTTGATATACCT+AGG | + | chr5.1:73982759-73982778 | None:intergenic | 15.0% |
!!! | TTTTATGCAAAAAAATCATA+TGG | - | chr5.1:73984188-73984207 | MS.gene062296:intron | 15.0% |
!! | AAGTAGCAAACAAAATTTAA+AGG | + | chr5.1:73983032-73983051 | None:intergenic | 20.0% |
!! | ACTTACTAAAATTAAAGATG+GGG | - | chr5.1:73983506-73983525 | MS.gene062296:intron | 20.0% |
!! | ATTGATTGTGATAAGAAAAA+TGG | + | chr5.1:73983345-73983364 | None:intergenic | 20.0% |
!! | CATATATGATGTACATTATT+AGG | + | chr5.1:73983397-73983416 | None:intergenic | 20.0% |
!! | TATATGTTTCATTGAATGAA+AGG | - | chr5.1:73984298-73984317 | MS.gene062296:intron | 20.0% |
!! | TTTCTTGTAAATTGAATAGA+AGG | + | chr5.1:73983231-73983250 | None:intergenic | 20.0% |
!!! | ATTTTGAAAATGTCAAAACA+TGG | - | chr5.1:73982924-73982943 | MS.gene062296:intron | 20.0% |
!!! | TTGTTTGCTACTTTATATTT+TGG | - | chr5.1:73983039-73983058 | MS.gene062296:intron | 20.0% |
! | AATTAGTATCAAAACCAAAG+TGG | + | chr5.1:73983965-73983984 | None:intergenic | 25.0% |
! | AATTGGAATAGCTACAATAA+TGG | + | chr5.1:73984245-73984264 | None:intergenic | 25.0% |
! | AATTTGTAAATGAATTGCAG+AGG | - | chr5.1:73984334-73984353 | MS.gene062296:intron | 25.0% |
! | ACAAGAAAAAATCATCTGAA+GGG | - | chr5.1:73983243-73983262 | MS.gene062296:intron | 25.0% |
! | ACTATTGCAGATGTTAAAAT+TGG | + | chr5.1:73983550-73983569 | None:intergenic | 25.0% |
! | ATAGTAAGAAACAATGACAA+TGG | + | chr5.1:73984399-73984418 | None:intergenic | 25.0% |
! | ATTTGTACTACTTTCAACAT+TGG | - | chr5.1:73984069-73984088 | MS.gene062296:CDS | 25.0% |
! | CTTATCACAATCAATTCTAT+TGG | - | chr5.1:73983350-73983369 | MS.gene062296:CDS | 25.0% |
! | GCAAATACCATTATACTTAA+AGG | + | chr5.1:73984108-73984127 | None:intergenic | 25.0% |
! | GTTTGAAAACACATTATTCT+TGG | - | chr5.1:73982957-73982976 | MS.gene062296:CDS | 25.0% |
! | TACAAGAAAAAATCATCTGA+AGG | - | chr5.1:73983242-73983261 | MS.gene062296:intron | 25.0% |
! | TCTTAGCATTCTTGTATATT+AGG | + | chr5.1:73984638-73984657 | None:intergenic | 25.0% |
! | TTGTAAATTGAATAGAAGGT+TGG | + | chr5.1:73983227-73983246 | None:intergenic | 25.0% |
! | TTTAATATAACCACATGTGT+CGG | + | chr5.1:73983767-73983786 | None:intergenic | 25.0% |
!!! | TTTGGTTTTGATACTAATTG+TGG | - | chr5.1:73983966-73983985 | MS.gene062296:intron | 25.0% |
ACCATCTTGAGATTAGAAAA+TGG | + | chr5.1:73982721-73982740 | None:intergenic | 30.0% | |
AGAAACAATGACAATGGAAA+TGG | + | chr5.1:73984393-73984412 | None:intergenic | 30.0% | |
AGCATATATCCATCTTACTA+AGG | + | chr5.1:73983877-73983896 | None:intergenic | 30.0% | |
AGTAAGATGGATATATGCTT+AGG | - | chr5.1:73983878-73983897 | MS.gene062296:intron | 30.0% | |
CAATACTACAAATATCTTGC+AGG | - | chr5.1:73983201-73983220 | MS.gene062296:intron | 30.0% | |
CAATTCTATTGGATGTGTTA+TGG | - | chr5.1:73983361-73983380 | MS.gene062296:CDS | 30.0% | |
TCTATTATTAGCTGCCAAAT+GGG | - | chr5.1:73984574-73984593 | MS.gene062296:intron | 30.0% | |
TGACAAGGATAAGTACATTA+TGG | - | chr5.1:73984452-73984471 | MS.gene062296:intron | 30.0% | |
TGTGATAAGAAAAATGGCAT+TGG | + | chr5.1:73983339-73983358 | None:intergenic | 30.0% | |
TGTGTAAATCCTTAGTAAGA+TGG | - | chr5.1:73983865-73983884 | MS.gene062296:intron | 30.0% | |
TTCTATTATTAGCTGCCAAA+TGG | - | chr5.1:73984573-73984592 | MS.gene062296:intron | 30.0% | |
TTGATACTAATTGTGGACAT+AGG | - | chr5.1:73983973-73983992 | MS.gene062296:intron | 30.0% | |
! | CTCTTTTTCTTTCTGTCTAT+AGG | - | chr5.1:73983076-73983095 | MS.gene062296:intron | 30.0% |
! | GTGTCACTACTAGAAAAAAT+TGG | + | chr5.1:73984262-73984281 | None:intergenic | 30.0% |
! | TAAGAAGTGTAACCACATAT+GGG | + | chr5.1:73983280-73983299 | None:intergenic | 30.0% |
! | TCCATTTTCTAATCTCAAGA+TGG | - | chr5.1:73982717-73982736 | MS.gene062296:CDS | 30.0% |
AAATGGTGTAGTGAAAAGGT+TGG | + | chr5.1:73982804-73982823 | None:intergenic | 35.0% | |
AATAGAAATCCCAACCCATT+TGG | + | chr5.1:73984591-73984610 | None:intergenic | 35.0% | |
ATACTAATTGTGGACATAGG+AGG | - | chr5.1:73983976-73983995 | MS.gene062296:CDS | 35.0% | |
CATGACATCAAAGCTGAAAA+TGG | + | chr5.1:73982821-73982840 | None:intergenic | 35.0% | |
CTGAAAATGGTGTAGTGAAA+AGG | + | chr5.1:73982808-73982827 | None:intergenic | 35.0% | |
GTTTCATTCAATCCCATATG+TGG | - | chr5.1:73983265-73983284 | MS.gene062296:intron | 35.0% | |
TGAATTGCAGATATCCACTT+TGG | - | chr5.1:73983948-73983967 | MS.gene062296:intron | 35.0% | |
TGCTGCTCCTTTAAGTATAA+TGG | - | chr5.1:73984098-73984117 | MS.gene062296:CDS | 35.0% | |
TGTAAATGAATTGCAGAGGA+AGG | - | chr5.1:73984338-73984357 | MS.gene062296:intron | 35.0% | |
TGTACATCATATATGCTCCT+AGG | - | chr5.1:73983402-73983421 | MS.gene062296:CDS | 35.0% | |
TTTCTATGGTCTCTTTGACA+AGG | - | chr5.1:73984437-73984456 | MS.gene062296:intron | 35.0% | |
! | CTAAGAAGTGTAACCACATA+TGG | + | chr5.1:73983281-73983300 | None:intergenic | 35.0% |
!! | AATGGGTTGGGATTTCTATT+AGG | - | chr5.1:73984591-73984610 | MS.gene062296:intron | 35.0% |
!! | CATTTTCAGCTTTGATGTCA+TGG | - | chr5.1:73982819-73982838 | MS.gene062296:intron | 35.0% |
!! | GAAAAATGGCATTGGTCTTT+AGG | + | chr5.1:73983331-73983350 | None:intergenic | 35.0% |
ACCATAGAAAAACCACATGG+TGG | + | chr5.1:73984427-73984446 | None:intergenic | 40.0% | |
AGCAAGAGCAGATTAAAGTG+TGG | - | chr5.1:73983906-73983925 | MS.gene062296:intron | 40.0% | |
ATCACCACCTTCATTGTGAA+AGG | - | chr5.1:73984018-73984037 | MS.gene062296:CDS | 40.0% | |
GAAGGAACCTTTCACAATGA+AGG | + | chr5.1:73984028-73984047 | None:intergenic | 40.0% | |
GAGAATGAAGAGACAAACGT+AGG | + | chr5.1:73983467-73983486 | None:intergenic | 40.0% | |
GAGACCATAGAAAAACCACA+TGG | + | chr5.1:73984430-73984449 | None:intergenic | 40.0% | |
GTTTGAACGTGCACTTACAA+TGG | + | chr5.1:73983130-73983149 | None:intergenic | 40.0% | |
TTATTAGCTGCCAAATGGGT+TGG | - | chr5.1:73984578-73984597 | MS.gene062296:intron | 40.0% | |
TTGATATACCTAGGAGACCA+AGG | + | chr5.1:73982750-73982769 | None:intergenic | 40.0% | |
! | ATGTTAGTGTCACTGTGTCA+GGG | - | chr5.1:73983822-73983841 | MS.gene062296:intron | 40.0% |
! | ATTGTGGACATAGGAGGTTT+TGG | - | chr5.1:73983982-73984001 | MS.gene062296:CDS | 40.0% |
! | GTTTTTACCTTGAGCTTCCT+AGG | + | chr5.1:73983422-73983441 | None:intergenic | 40.0% |
! | TATTAGCTGCCAAATGGGTT+GGG | - | chr5.1:73984579-73984598 | MS.gene062296:intron | 40.0% |
!! | TGTCCAACTGAGCTTTAAGT+CGG | + | chr5.1:73983733-73983752 | None:intergenic | 40.0% |
!!! | CTCAAGATGGTTTTGATCCT+TGG | - | chr5.1:73982730-73982749 | MS.gene062296:CDS | 40.0% |
AGCAATTGCATGCACTCTAG+AGG | + | chr5.1:73983663-73983682 | None:intergenic | 45.0% | |
ATATGCTCCTAGGAAGCTCA+AGG | - | chr5.1:73983412-73983431 | MS.gene062296:CDS | 45.0% | |
GGAACCTTTCACAATGAAGG+TGG | + | chr5.1:73984025-73984044 | None:intergenic | 45.0% | |
TCAACCCCACAACTTGAACA+CGG | + | chr5.1:73984050-73984069 | None:intergenic | 45.0% | |
! | CATGTTAGTGTCACTGTGTC+AGG | - | chr5.1:73983821-73983840 | MS.gene062296:intron | 45.0% |
! | GCCACCATGTGGTTTTTCTA+TGG | - | chr5.1:73984423-73984442 | MS.gene062296:intron | 45.0% |
!! | GTTTTGATCCTTGGTCTCCT+AGG | - | chr5.1:73982739-73982758 | MS.gene062296:CDS | 45.0% |
!! | TCCTTCCGTGTTCAAGTTGT+GGG | - | chr5.1:73984042-73984061 | MS.gene062296:CDS | 45.0% |
!! | TTCCTTCCGTGTTCAAGTTG+TGG | - | chr5.1:73984041-73984060 | MS.gene062296:CDS | 45.0% |
!!! | ATAAAATTATGATATTTTAA+GGG | + | chr5.1:73984174-73984193 | None:intergenic | 5.0% |
TAACACGACTCCGACACATG+TGG | - | chr5.1:73983754-73983773 | MS.gene062296:intron | 50.0% | |
TTACTATCTGCGCCACCATG+TGG | - | chr5.1:73984412-73984431 | MS.gene062296:intron | 50.0% | |
!! | CCTTCCGTGTTCAAGTTGTG+GGG | - | chr5.1:73984043-73984062 | MS.gene062296:CDS | 50.0% |
!! | GCACCGACTTAAAGCTCAGT+TGG | - | chr5.1:73983727-73983746 | MS.gene062296:intron | 50.0% |
CCCCACAACTTGAACACGGA+AGG | + | chr5.1:73984046-73984065 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 73982712 | 73984695 | 73982712 | ID=MS.gene062296 |
chr5.1 | mRNA | 73982712 | 73984695 | 73982712 | ID=MS.gene062296.t1;Parent=MS.gene062296 |
chr5.1 | exon | 73984647 | 73984695 | 73984647 | ID=MS.gene062296.t1.exon1;Parent=MS.gene062296.t1 |
chr5.1 | CDS | 73984647 | 73984695 | 73984647 | ID=cds.MS.gene062296.t1;Parent=MS.gene062296.t1 |
chr5.1 | exon | 73984276 | 73984309 | 73984276 | ID=MS.gene062296.t1.exon2;Parent=MS.gene062296.t1 |
chr5.1 | CDS | 73984276 | 73984309 | 73984276 | ID=cds.MS.gene062296.t1;Parent=MS.gene062296.t1 |
chr5.1 | exon | 73983974 | 73984184 | 73983974 | ID=MS.gene062296.t1.exon3;Parent=MS.gene062296.t1 |
chr5.1 | CDS | 73983974 | 73984184 | 73983974 | ID=cds.MS.gene062296.t1;Parent=MS.gene062296.t1 |
chr5.1 | exon | 73983288 | 73983449 | 73983288 | ID=MS.gene062296.t1.exon4;Parent=MS.gene062296.t1 |
chr5.1 | CDS | 73983288 | 73983449 | 73983288 | ID=cds.MS.gene062296.t1;Parent=MS.gene062296.t1 |
chr5.1 | exon | 73982934 | 73983053 | 73982934 | ID=MS.gene062296.t1.exon5;Parent=MS.gene062296.t1 |
chr5.1 | CDS | 73982934 | 73983053 | 73982934 | ID=cds.MS.gene062296.t1;Parent=MS.gene062296.t1 |
chr5.1 | exon | 73982712 | 73982822 | 73982712 | ID=MS.gene062296.t1.exon6;Parent=MS.gene062296.t1 |
chr5.1 | CDS | 73982712 | 73982822 | 73982712 | ID=cds.MS.gene062296.t1;Parent=MS.gene062296.t1 |
Gene Sequence |
Protein sequence |