Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80949.t1 | XP_013447478.1 | 97.2 | 254 | 6 | 1 | 1 | 254 | 1 | 253 | 4.40E-126 | 460.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80949.t1 | Q9FPN0 | 64.3 | 210 | 74 | 1 | 8 | 217 | 8 | 216 | 1.6e-68 | 260.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80949.t1 | A0A072TVM1 | 97.2 | 254 | 6 | 1 | 1 | 254 | 1 | 253 | 3.2e-126 | 460.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene063278 | MS.gene80949 | PPI |
| MS.gene80949 | MS.gene79463 | PPI |
| MS.gene80949 | MS.gene044269 | PPI |
| MS.gene80949 | MS.gene69746 | PPI |
| MS.gene80949 | MS.gene70529 | PPI |
| MS.gene80949 | MS.gene46188 | PPI |
| MS.gene80949 | MS.gene048962 | PPI |
| MS.gene80949 | MS.gene25769 | PPI |
| MS.gene80949 | MS.gene90281 | PPI |
| MS.gene030474 | MS.gene80949 | PPI |
| MS.gene55828 | MS.gene80949 | PPI |
| MS.gene80949 | MS.gene000529 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80949.t1 | MTR_7g007490 | 97.244 | 254 | 6 | 1 | 1 | 254 | 1 | 253 | 2.56e-180 | 495 |
| MS.gene80949.t1 | MTR_5g092600 | 77.647 | 255 | 53 | 3 | 1 | 254 | 1 | 252 | 9.07e-140 | 392 |
| MS.gene80949.t1 | MTR_8g096320 | 53.247 | 231 | 107 | 1 | 3 | 232 | 2 | 232 | 2.47e-85 | 255 |
| MS.gene80949.t1 | MTR_5g067530 | 55.189 | 212 | 94 | 1 | 6 | 216 | 5 | 216 | 3.61e-77 | 234 |
| MS.gene80949.t1 | MTR_3g098910 | 48.221 | 253 | 124 | 4 | 1 | 252 | 1 | 247 | 2.31e-75 | 231 |
| MS.gene80949.t1 | MTR_7g405730 | 48.047 | 256 | 115 | 2 | 3 | 240 | 2 | 257 | 5.33e-75 | 229 |
| MS.gene80949.t1 | MTR_7g405710 | 53.846 | 221 | 102 | 0 | 3 | 223 | 2 | 222 | 6.46e-75 | 229 |
| MS.gene80949.t1 | MTR_2g007890 | 46.923 | 260 | 122 | 4 | 1 | 253 | 3 | 253 | 9.24e-72 | 221 |
| MS.gene80949.t1 | MTR_8g096310 | 45.679 | 243 | 126 | 3 | 5 | 246 | 4 | 241 | 2.73e-70 | 217 |
| MS.gene80949.t1 | MTR_3g098930 | 50.505 | 198 | 95 | 3 | 4 | 199 | 4 | 200 | 9.26e-60 | 188 |
| MS.gene80949.t1 | MTR_8g096320 | 51.412 | 177 | 85 | 1 | 57 | 232 | 1 | 177 | 5.55e-58 | 183 |
| MS.gene80949.t1 | MTR_2g436310 | 39.367 | 221 | 131 | 2 | 14 | 231 | 9 | 229 | 6.17e-52 | 169 |
| MS.gene80949.t1 | MTR_1g029380 | 41.629 | 221 | 122 | 3 | 12 | 228 | 7 | 224 | 8.23e-52 | 169 |
| MS.gene80949.t1 | MTR_3g089125 | 39.662 | 237 | 137 | 4 | 7 | 239 | 2 | 236 | 1.98e-51 | 168 |
| MS.gene80949.t1 | MTR_8g099730 | 34.413 | 247 | 155 | 3 | 1 | 240 | 9 | 255 | 1.54e-44 | 150 |
| MS.gene80949.t1 | MTR_6g007633 | 37.917 | 240 | 131 | 6 | 12 | 247 | 10 | 235 | 6.35e-43 | 146 |
| MS.gene80949.t1 | MTR_6g007623 | 39.512 | 205 | 121 | 2 | 12 | 213 | 7 | 211 | 9.51e-42 | 143 |
| MS.gene80949.t1 | MTR_3g080990 | 34.979 | 243 | 148 | 2 | 14 | 254 | 12 | 246 | 9.55e-42 | 144 |
| MS.gene80949.t1 | MTR_6g007637 | 37.799 | 209 | 127 | 2 | 12 | 217 | 11 | 219 | 1.16e-40 | 140 |
| MS.gene80949.t1 | MTR_8g042490 | 37.559 | 213 | 126 | 3 | 14 | 222 | 18 | 227 | 8.26e-40 | 138 |
| MS.gene80949.t1 | MTR_1g028460 | 31.818 | 242 | 148 | 2 | 11 | 248 | 7 | 235 | 3.81e-36 | 129 |
| MS.gene80949.t1 | MTR_2g073190 | 34.597 | 211 | 135 | 2 | 14 | 222 | 18 | 227 | 1.36e-34 | 131 |
| MS.gene80949.t1 | MTR_3g090950 | 29.958 | 237 | 160 | 2 | 6 | 238 | 2 | 236 | 1.11e-32 | 120 |
| MS.gene80949.t1 | MTR_4g106990 | 37.097 | 186 | 115 | 1 | 30 | 213 | 35 | 220 | 1.62e-32 | 119 |
| MS.gene80949.t1 | MTR_3g090940 | 30.196 | 255 | 151 | 5 | 6 | 248 | 2 | 241 | 1.39e-31 | 117 |
| MS.gene80949.t1 | MTR_8g099730 | 34.270 | 178 | 112 | 2 | 68 | 240 | 14 | 191 | 1.00e-28 | 108 |
| MS.gene80949.t1 | MTR_6g007610 | 29.114 | 237 | 139 | 7 | 12 | 230 | 10 | 235 | 2.31e-24 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80949.t1 | AT2G39060 | 57.551 | 245 | 98 | 4 | 7 | 251 | 6 | 244 | 1.32e-87 | 261 |
| MS.gene80949.t1 | AT5G50790 | 52.340 | 235 | 109 | 2 | 3 | 234 | 2 | 236 | 2.49e-82 | 248 |
| MS.gene80949.t1 | AT5G13170 | 50.000 | 226 | 111 | 2 | 5 | 228 | 6 | 231 | 1.52e-77 | 236 |
| MS.gene80949.t1 | AT3G48740 | 51.351 | 222 | 108 | 0 | 5 | 226 | 6 | 227 | 1.27e-76 | 234 |
| MS.gene80949.t1 | AT5G50800 | 50.638 | 235 | 113 | 2 | 3 | 234 | 2 | 236 | 1.66e-75 | 231 |
| MS.gene80949.t1 | AT5G23660 | 49.558 | 226 | 113 | 1 | 4 | 228 | 4 | 229 | 1.42e-73 | 226 |
| MS.gene80949.t1 | AT4G25010 | 52.727 | 220 | 103 | 1 | 9 | 227 | 8 | 227 | 1.73e-71 | 221 |
| MS.gene80949.t1 | AT1G21460 | 40.486 | 247 | 134 | 5 | 12 | 253 | 7 | 245 | 9.52e-53 | 171 |
| MS.gene80949.t1 | AT4G15920 | 37.768 | 233 | 121 | 5 | 14 | 232 | 9 | 231 | 1.02e-49 | 164 |
| MS.gene80949.t1 | AT3G16690 | 35.714 | 210 | 132 | 2 | 14 | 221 | 9 | 217 | 1.30e-44 | 150 |
| MS.gene80949.t1 | AT3G16690 | 35.714 | 210 | 132 | 2 | 14 | 221 | 44 | 252 | 1.95e-44 | 150 |
| MS.gene80949.t1 | AT4G10850 | 33.929 | 224 | 142 | 3 | 12 | 232 | 12 | 232 | 3.06e-43 | 147 |
| MS.gene80949.t1 | AT5G53190 | 36.111 | 252 | 150 | 6 | 8 | 252 | 4 | 251 | 1.16e-42 | 146 |
| MS.gene80949.t1 | AT1G21460 | 41.667 | 192 | 109 | 2 | 12 | 201 | 7 | 197 | 1.51e-41 | 141 |
| MS.gene80949.t1 | AT5G62850 | 33.190 | 232 | 146 | 5 | 7 | 232 | 5 | 233 | 3.20e-41 | 142 |
| MS.gene80949.t1 | AT5G40260 | 37.607 | 234 | 133 | 6 | 7 | 227 | 5 | 238 | 1.22e-40 | 140 |
| MS.gene80949.t1 | AT1G66770 | 36.214 | 243 | 139 | 6 | 12 | 243 | 12 | 249 | 2.25e-39 | 137 |
| MS.gene80949.t1 | AT3G14770 | 33.945 | 218 | 127 | 3 | 14 | 222 | 18 | 227 | 1.36e-35 | 127 |
| MS.gene80949.t1 | AT5G40260 | 38.220 | 191 | 114 | 3 | 8 | 194 | 6 | 196 | 9.16e-34 | 121 |
| MS.gene80949.t1 | AT3G28007 | 37.915 | 211 | 127 | 3 | 12 | 219 | 10 | 219 | 1.39e-33 | 122 |
| MS.gene80949.t1 | AT5G62850 | 33.333 | 195 | 122 | 4 | 5 | 194 | 3 | 194 | 1.27e-32 | 119 |
| MS.gene80949.t1 | AT3G16690 | 32.044 | 181 | 106 | 4 | 14 | 192 | 9 | 174 | 4.12e-22 | 90.9 |
Find 40 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTGTTATTGCTATATTA+TGG | 0.220036 | 7.3:-90478744 | MS.gene80949:CDS |
| GAAAGTACCATTATGCTTAA+AGG | 0.226693 | 7.3:+90477893 | None:intergenic |
| TGCTGCTCCTTTAAGCATAA+TGG | 0.278814 | 7.3:-90477900 | MS.gene80949:intron |
| TGACAAGGATAACTACATTA+TGG | 0.292048 | 7.3:-90477033 | MS.gene80949:intron |
| TCCTTTCGTGTTCATGCTGT+TGG | 0.308464 | 7.3:-90477956 | MS.gene80949:CDS |
| ATTGATTGTGATAATCAAAA+TGG | 0.322958 | 7.3:+90478704 | None:intergenic |
| AGAAACAATGACAAAGAAAA+TGG | 0.337494 | 7.3:+90477095 | None:intergenic |
| TCAAAATGGCATTGGCCTTA+AGG | 0.339791 | 7.3:+90478718 | None:intergenic |
| ATTATCACAATCAATTGTAT+TGG | 0.347338 | 7.3:-90478696 | MS.gene80949:CDS |
| TATCAGCTACCAAATGTGTT+AGG | 0.359344 | 7.3:-90476896 | MS.gene80949:intron |
| GTTGCTGACCTAGGAGGTCT+TGG | 0.368055 | 7.3:-90478016 | MS.gene80949:CDS |
| AATGTGTTAGGATTTCTATT+TGG | 0.380379 | 7.3:-90476884 | MS.gene80949:CDS |
| TCTTAGCATTCTTGTATATG+AGG | 0.386699 | 7.3:+90476840 | None:intergenic |
| CATATATGATGTACATGATT+AGG | 0.387583 | 7.3:+90478652 | None:intergenic |
| CTAAGAAGTGCAACTACATA+TGG | 0.405787 | 7.3:+90478768 | None:intergenic |
| GCTATATTATGGCTTCCTTA+AGG | 0.410260 | 7.3:-90478733 | MS.gene80949:CDS |
| AGGTAACATTGTCTCATTCA+TGG | 0.424995 | 7.3:-90478997 | MS.gene80949:CDS |
| CCTTTCGTGTTCATGCTGTT+GGG | 0.431442 | 7.3:-90477955 | MS.gene80949:CDS |
| AATAGAAATCCTAACACATT+TGG | 0.432242 | 7.3:+90476887 | None:intergenic |
| AACCATCTCGTGATCAGAAA+AGG | 0.467285 | 7.3:+90479695 | None:intergenic |
| TTTATACTTGTTGCTGACCT+AGG | 0.468356 | 7.3:-90478025 | MS.gene80949:CDS |
| CATGATAATCACCTTCTTTG+TGG | 0.472006 | 7.3:-90477987 | MS.gene80949:CDS |
| CATGAACATGGTTGTGATGA+TGG | 0.472085 | 7.3:-90476785 | MS.gene80949:CDS |
| TGAATTGCAGATATCCACTT+TGG | 0.495123 | 7.3:-90478050 | MS.gene80949:intron |
| ATTTCAACCACCACTACTGA+AGG | 0.512650 | 7.3:+90476746 | None:intergenic |
| TTGTAAATCGAATAGAATGT+TGG | 0.534434 | 7.3:+90478822 | None:intergenic |
| TGGTCAAGCCAAGACCTCCT+AGG | 0.539989 | 7.3:+90478008 | None:intergenic |
| CACAAAGAAGGTGATTATCA+TGG | 0.546705 | 7.3:+90477988 | None:intergenic |
| GGAGGATTTCACCACAAAGA+AGG | 0.557339 | 7.3:+90477976 | None:intergenic |
| TGTGATAATCAAAATGGCAT+TGG | 0.560583 | 7.3:+90478710 | None:intergenic |
| TTACTCTTTGTGCCACCATG+TGG | 0.592006 | 7.3:-90477073 | MS.gene80949:CDS |
| AGAGGACTTACAATGGTGCT+AGG | 0.596356 | 7.3:+90478970 | None:intergenic |
| ATACTTGTTGCTGACCTAGG+AGG | 0.597667 | 7.3:-90478022 | MS.gene80949:CDS |
| AGAGTTCCCTTCAGTAGTGG+TGG | 0.599805 | 7.3:-90476753 | MS.gene80949:CDS |
| ACTGAGCAGCAGCATGAACA+TGG | 0.605926 | 7.3:-90476797 | MS.gene80949:CDS |
| CCCAACAGCATGAACACGAA+AGG | 0.607543 | 7.3:+90477955 | None:intergenic |
| TTTCTACGGTCTCTTTGACA+AGG | 0.610020 | 7.3:-90477048 | MS.gene80949:CDS |
| AACAGCATGAACACGAAAGG+AGG | 0.617910 | 7.3:+90477958 | None:intergenic |
| ACAAGAGTTCCCTTCAGTAG+TGG | 0.628149 | 7.3:-90476756 | MS.gene80949:CDS |
| TTTCAACCACCACTACTGAA+GGG | 0.651912 | 7.3:+90476747 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGACAAAAAAAATAAAAT+TGG | - | chr7.3:90479002-90479021 | MS.gene80949:intron | 10.0% |
| !! | ATTAAAAATATGATCATAAT+AGG | + | chr7.3:90478793-90478812 | None:intergenic | 10.0% |
| !! | TAATATACTAATATATATCA+TGG | - | chr7.3:90477359-90477378 | MS.gene80949:intron | 10.0% |
| !! | TATTAAGTATATAAGATGAA+TGG | + | chr7.3:90478573-90478592 | None:intergenic | 15.0% |
| !! | TTAAAGCCATAAAAAAAAAT+TGG | - | chr7.3:90478649-90478668 | MS.gene80949:CDS | 15.0% |
| !!! | TATCAACCAATTTTTTTTTA+TGG | + | chr7.3:90478658-90478677 | None:intergenic | 15.0% |
| !!! | TATTTTTAGTGAATACATTA+AGG | - | chr7.3:90477313-90477332 | MS.gene80949:intron | 15.0% |
| !!! | TTGAAAATATGATATTTTGA+AGG | + | chr7.3:90478903-90478922 | None:intergenic | 15.0% |
| !! | ATTATCACAATCAATTGTAT+TGG | - | chr7.3:90477733-90477752 | MS.gene80949:intron | 20.0% |
| !! | ATTGATTGTGATAATCAAAA+TGG | + | chr7.3:90477728-90477747 | None:intergenic | 20.0% |
| !! | TACATTCATTATAAGCAAAA+AGG | - | chr7.3:90477868-90477887 | MS.gene80949:intron | 20.0% |
| !! | TATAACAACAAAGTTGAAAA+TGG | + | chr7.3:90476831-90476850 | None:intergenic | 20.0% |
| !!! | ACAAAAACTTCTAAAAGTTT+AGG | + | chr7.3:90477068-90477087 | None:intergenic | 20.0% |
| !!! | ATATTGGTCTTACATATATT+AGG | + | chr7.3:90478143-90478162 | None:intergenic | 20.0% |
| !!! | ATATTTTCAAAATTGTGCAT+TGG | - | chr7.3:90478913-90478932 | MS.gene80949:intron | 20.0% |
| !!! | TACCTTCTAATATTTTTCAA+GGG | - | chr7.3:90478702-90478721 | MS.gene80949:CDS | 20.0% |
| !!! | TTATTTAATTTGTTTGAGAG+AGG | + | chr7.3:90477480-90477499 | None:intergenic | 20.0% |
| !!! | TTTCTATTTTTCATTCCAAT+TGG | - | chr7.3:90477038-90477057 | MS.gene80949:CDS | 20.0% |
| !!! | TTTTTTCTTACAATGAATGT+AGG | + | chr7.3:90477909-90477928 | None:intergenic | 20.0% |
| ! | AAAGACTGCAATGTTAAAAA+TGG | + | chr7.3:90478510-90478529 | None:intergenic | 25.0% |
| ! | AAATGGTGTAGTGAAAAAAT+TGG | + | chr7.3:90476814-90476833 | None:intergenic | 25.0% |
| ! | AACAAGTATAAAAACCAAAG+TGG | + | chr7.3:90478396-90478415 | None:intergenic | 25.0% |
| ! | AAGAAAGATTAACACAAACA+TGG | + | chr7.3:90478287-90478306 | None:intergenic | 25.0% |
| ! | AAGAAAGATTGTTGAGATTA+TGG | + | chr7.3:90477830-90477849 | None:intergenic | 25.0% |
| ! | AATAGAAATCCTAACACATT+TGG | + | chr7.3:90479545-90479564 | None:intergenic | 25.0% |
| ! | AATGTGTTAGGATTTCTATT+TGG | - | chr7.3:90479545-90479564 | MS.gene80949:intron | 25.0% |
| ! | ACAAGAAAAAATCATCTGAA+GGG | - | chr7.3:90477626-90477645 | MS.gene80949:intron | 25.0% |
| ! | ACACTTTCACTATGAAATAT+TGG | + | chr7.3:90478159-90478178 | None:intergenic | 25.0% |
| ! | ACGATTATAGATATAACATG+TGG | - | chr7.3:90478337-90478356 | MS.gene80949:intron | 25.0% |
| ! | AGAAACAATGACAAAGAAAA+TGG | + | chr7.3:90479337-90479356 | None:intergenic | 25.0% |
| ! | ATATTGTGTAATATATGCAG+GGG | + | chr7.3:90476948-90476967 | None:intergenic | 25.0% |
| ! | CATATATGATGTACATGATT+AGG | + | chr7.3:90477780-90477799 | None:intergenic | 25.0% |
| ! | CTATAATCGCAAATTAGAAA+TGG | + | chr7.3:90478025-90478044 | None:intergenic | 25.0% |
| ! | GAAACGGAGATAATATATAT+CGG | + | chr7.3:90478728-90478747 | None:intergenic | 25.0% |
| ! | GATATTGTGTAATATATGCA+GGG | + | chr7.3:90476949-90476968 | None:intergenic | 25.0% |
| ! | TACAAGAAAAAATCATCTGA+AGG | - | chr7.3:90477625-90477644 | MS.gene80949:intron | 25.0% |
| ! | TAGAGTTCACACATTAAATA+TGG | - | chr7.3:90476891-90476910 | MS.gene80949:CDS | 25.0% |
| ! | TAGTGCATGAAAAATTAAGA+TGG | + | chr7.3:90478952-90478971 | None:intergenic | 25.0% |
| ! | TCAACACTTTACAACTAAAT+TGG | - | chr7.3:90479043-90479062 | MS.gene80949:intron | 25.0% |
| ! | TCACGACATATATTTAGAAA+CGG | + | chr7.3:90478744-90478763 | None:intergenic | 25.0% |
| ! | TGATATTGTGTAATATATGC+AGG | + | chr7.3:90476950-90476969 | None:intergenic | 25.0% |
| ! | TGTTTGTGTTAATCTTTCTT+TGG | - | chr7.3:90478287-90478306 | MS.gene80949:intron | 25.0% |
| ! | TTGTAAATCGAATAGAATGT+TGG | + | chr7.3:90477610-90477629 | None:intergenic | 25.0% |
| !! | GCATTGTTATTGCTATATTA+TGG | - | chr7.3:90477685-90477704 | MS.gene80949:intron | 25.0% |
| !! | GTACCTTCTAATATTTTTCA+AGG | - | chr7.3:90478701-90478720 | MS.gene80949:CDS | 25.0% |
| !! | GTGTCATTAATAGACAAAAT+TGG | + | chr7.3:90479164-90479183 | None:intergenic | 25.0% |
| !! | GTTTTTCTGTCATTAATTAC+TGG | - | chr7.3:90479079-90479098 | MS.gene80949:intron | 25.0% |
| !!! | AAGAGATTTCTAGCATTTTA+AGG | + | chr7.3:90477537-90477556 | None:intergenic | 25.0% |
| !!! | GAAATGTTTTTTTTTCCTTC+TGG | - | chr7.3:90476851-90476870 | MS.gene80949:CDS | 25.0% |
| !!! | TTTTATGGCTTTAATTTGCT+TGG | + | chr7.3:90478643-90478662 | None:intergenic | 25.0% |
| AAAAGTTTAGGTAGACCAAT+TGG | + | chr7.3:90477056-90477075 | None:intergenic | 30.0% | |
| ACACATTAAATATGGAGAAG+TGG | - | chr7.3:90476899-90476918 | MS.gene80949:intron | 30.0% | |
| ACATTAAATATGGAGAAGTG+GGG | - | chr7.3:90476901-90476920 | MS.gene80949:intron | 30.0% | |
| ATGTTACCTAGACACAAAAA+AGG | + | chr7.3:90477421-90477440 | None:intergenic | 30.0% | |
| CACATTAAATATGGAGAAGT+GGG | - | chr7.3:90476900-90476919 | MS.gene80949:intron | 30.0% | |
| TCTTAGCATTCTTGTATATG+AGG | + | chr7.3:90479592-90479611 | None:intergenic | 30.0% | |
| TGAAAAAATTGGAGTAAGAG+TGG | + | chr7.3:90476803-90476822 | None:intergenic | 30.0% | |
| TGACAAGGATAACTACATTA+TGG | - | chr7.3:90479396-90479415 | MS.gene80949:intron | 30.0% | |
| TGTGATAATCAAAATGGCAT+TGG | + | chr7.3:90477722-90477741 | None:intergenic | 30.0% | |
| ! | AAAATTGTGCATTGGTATTG+TGG | - | chr7.3:90478921-90478940 | MS.gene80949:intron | 30.0% |
| ! | ATTACGTACCTTAAGCTTTT+TGG | + | chr7.3:90477806-90477825 | None:intergenic | 30.0% |
| ! | TTACGTACCTTAAGCTTTTT+GGG | + | chr7.3:90477805-90477824 | None:intergenic | 30.0% |
| !! | CAAAATTGGATTAGTCATGA+TGG | + | chr7.3:90479150-90479169 | None:intergenic | 30.0% |
| !! | GAAAGTACCATTATGCTTAA+AGG | + | chr7.3:90478539-90478558 | None:intergenic | 30.0% |
| !!! | ATGTGTGAACTCTAGTTTTT+AGG | + | chr7.3:90476885-90476904 | None:intergenic | 30.0% |
| !!! | ATGTTTCCTTTTTTGTGTCT+AGG | - | chr7.3:90477412-90477431 | MS.gene80949:intron | 30.0% |
| AGGTAACATTGTCTCATTCA+TGG | - | chr7.3:90477432-90477451 | MS.gene80949:intron | 35.0% | |
| ATATGCTCCCAAAAAGCTTA+AGG | - | chr7.3:90477795-90477814 | MS.gene80949:intron | 35.0% | |
| ATCGTACTAACTCATGTTCT+AGG | + | chr7.3:90478322-90478341 | None:intergenic | 35.0% | |
| CACAAAGAAGGTGATTATCA+TGG | + | chr7.3:90478444-90478463 | None:intergenic | 35.0% | |
| CATGATAATCACCTTCTTTG+TGG | - | chr7.3:90478442-90478461 | MS.gene80949:intron | 35.0% | |
| CATTTAACTGACGGAAATCT+GGG | + | chr7.3:90478603-90478622 | None:intergenic | 35.0% | |
| GCTATATTATGGCTTCCTTA+AGG | - | chr7.3:90477696-90477715 | MS.gene80949:intron | 35.0% | |
| GGCCCTTGAAAAATATTAGA+AGG | + | chr7.3:90478707-90478726 | None:intergenic | 35.0% | |
| GTGTAGGATCATTTAACTGA+CGG | + | chr7.3:90478612-90478631 | None:intergenic | 35.0% | |
| TATCAGCTACCAAATGTGTT+AGG | - | chr7.3:90479533-90479552 | MS.gene80949:intron | 35.0% | |
| TCATTTAACTGACGGAAATC+TGG | + | chr7.3:90478604-90478623 | None:intergenic | 35.0% | |
| TGAATTGCAGATATCCACTT+TGG | - | chr7.3:90478379-90478398 | MS.gene80949:intron | 35.0% | |
| TGTACATGAATTGCAGAGAA+AGG | - | chr7.3:90479282-90479301 | MS.gene80949:intron | 35.0% | |
| ! | CTAAGAAGTGCAACTACATA+TGG | + | chr7.3:90477664-90477683 | None:intergenic | 35.0% |
| ! | TTTATACTTGTTGCTGACCT+AGG | - | chr7.3:90478404-90478423 | MS.gene80949:intron | 35.0% |
| !! | GTTTTGATCTTTGGTCTTCT+AGG | - | chr7.3:90476754-90476773 | MS.gene80949:CDS | 35.0% |
| AACCATCTCGTGATCAGAAA+AGG | + | chr7.3:90476737-90476756 | None:intergenic | 40.0% | |
| ATTTCAACCACCACTACTGA+AGG | + | chr7.3:90479686-90479705 | None:intergenic | 40.0% | |
| CATGAACATGGTTGTGATGA+TGG | - | chr7.3:90479644-90479663 | MS.gene80949:intron | 40.0% | |
| CATTACCAACTGAGCTAAAC+TGG | - | chr7.3:90476968-90476987 | MS.gene80949:intron | 40.0% | |
| GACACTGACACTCATATAAG+TGG | - | chr7.3:90478188-90478207 | MS.gene80949:intron | 40.0% | |
| GAGTGCATGTGATTAGCATT+AGG | - | chr7.3:90478092-90478111 | MS.gene80949:intron | 40.0% | |
| GTTTGAGAGAGGACTTACAA+TGG | + | chr7.3:90477469-90477488 | None:intergenic | 40.0% | |
| TGCTGCTCCTTTAAGCATAA+TGG | - | chr7.3:90478529-90478548 | MS.gene80949:intron | 40.0% | |
| TGTTACTCTTTCTCTCTTGC+AGG | - | chr7.3:90477584-90477603 | MS.gene80949:intron | 40.0% | |
| TTTCAACCACCACTACTGAA+GGG | + | chr7.3:90479685-90479704 | None:intergenic | 40.0% | |
| TTTCTACGGTCTCTTTGACA+AGG | - | chr7.3:90479381-90479400 | MS.gene80949:intron | 40.0% | |
| ! | TTCCTTTTCTGATCACGAGA+TGG | - | chr7.3:90476732-90476751 | MS.gene80949:CDS | 40.0% |
| ! | TTTTAGGCTACTTGACCAGA+AGG | + | chr7.3:90476869-90476888 | None:intergenic | 40.0% |
| !! | CATGGTACTAGCTTTCAGTT+TGG | - | chr7.3:90477377-90477396 | MS.gene80949:intron | 40.0% |
| !! | TCAAAATGGCATTGGCCTTA+AGG | + | chr7.3:90477714-90477733 | None:intergenic | 40.0% |
| !! | TTGCTTGGCTTTATGAGTGT+AGG | + | chr7.3:90478628-90478647 | None:intergenic | 40.0% |
| !!! | CACGAGATGGTTTTGATCTT+TGG | - | chr7.3:90476745-90476764 | MS.gene80949:CDS | 40.0% |
| AACAGCATGAACACGAAAGG+AGG | + | chr7.3:90478474-90478493 | None:intergenic | 45.0% | |
| ACAAGAGTTCCCTTCAGTAG+TGG | - | chr7.3:90479673-90479692 | MS.gene80949:intron | 45.0% | |
| ACCGTAGAAAAACCACATGG+TGG | + | chr7.3:90479371-90479390 | None:intergenic | 45.0% | |
| AGAGGACTTACAATGGTGCT+AGG | + | chr7.3:90477462-90477481 | None:intergenic | 45.0% | |
| CCTTTCGTGTTCATGCTGTT+GGG | - | chr7.3:90478474-90478493 | MS.gene80949:intron | 45.0% | |
| GAGACCGTAGAAAAACCACA+TGG | + | chr7.3:90479374-90479393 | None:intergenic | 45.0% | |
| GCTAATCACATGCACTCTAG+AGG | + | chr7.3:90478089-90478108 | None:intergenic | 45.0% | |
| GGAGGATTTCACCACAAAGA+AGG | + | chr7.3:90478456-90478475 | None:intergenic | 45.0% | |
| GTGTAATATATGCAGGGGCT+GGG | + | chr7.3:90476943-90476962 | None:intergenic | 45.0% | |
| TCCTTTCGTGTTCATGCTGT+TGG | - | chr7.3:90478473-90478492 | MS.gene80949:intron | 45.0% | |
| TGTGTAATATATGCAGGGGC+TGG | + | chr7.3:90476944-90476963 | None:intergenic | 45.0% | |
| TTACTCTTTGTGCCACCATG+TGG | - | chr7.3:90479356-90479375 | MS.gene80949:intron | 45.0% | |
| ! | ACGATCCAGTTTAGCTCAGT+TGG | + | chr7.3:90476976-90476995 | None:intergenic | 45.0% |
| ! | ATACTTGTTGCTGACCTAGG+AGG | - | chr7.3:90478407-90478426 | MS.gene80949:intron | 45.0% |
| ! | ATATGGAGAAGTGGGGTGTT+CGG | - | chr7.3:90476908-90476927 | MS.gene80949:intron | 45.0% |
| ! | GCCACCATGTGGTTTTTCTA+CGG | - | chr7.3:90479367-90479386 | MS.gene80949:intron | 45.0% |
| ! | TATGAGTGTCAGTGTCGAGT+CGG | + | chr7.3:90478184-90478203 | None:intergenic | 45.0% |
| ACTGAGCAGCAGCATGAACA+TGG | - | chr7.3:90479632-90479651 | MS.gene80949:intron | 50.0% | |
| AGAGTTCCCTTCAGTAGTGG+TGG | - | chr7.3:90479676-90479695 | MS.gene80949:CDS | 50.0% | |
| CCCAACAGCATGAACACGAA+AGG | + | chr7.3:90478477-90478496 | None:intergenic | 50.0% | |
| ! | TATGGAGAAGTGGGGTGTTC+GGG | - | chr7.3:90476909-90476928 | MS.gene80949:intron | 50.0% |
| GTTGCTGACCTAGGAGGTCT+TGG | - | chr7.3:90478413-90478432 | MS.gene80949:intron | 55.0% | |
| TGGTCAAGCCAAGACCTCCT+AGG | + | chr7.3:90478424-90478443 | None:intergenic | 55.0% | |
| ! | ATGGAGAAGTGGGGTGTTCG+GGG | - | chr7.3:90476910-90476929 | MS.gene80949:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 90476727 | 90479724 | 90476727 | ID=MS.gene80949 |
| chr7.3 | mRNA | 90476727 | 90479724 | 90476727 | ID=MS.gene80949.t1;Parent=MS.gene80949 |
| chr7.3 | exon | 90479676 | 90479724 | 90479676 | ID=MS.gene80949.t1.exon1;Parent=MS.gene80949.t1 |
| chr7.3 | CDS | 90479676 | 90479724 | 90479676 | ID=cds.MS.gene80949.t1;Parent=MS.gene80949.t1 |
| chr7.3 | exon | 90478981 | 90479017 | 90478981 | ID=MS.gene80949.t1.exon2;Parent=MS.gene80949.t1 |
| chr7.3 | CDS | 90478981 | 90479017 | 90478981 | ID=cds.MS.gene80949.t1;Parent=MS.gene80949.t1 |
| chr7.3 | exon | 90478635 | 90478845 | 90478635 | ID=MS.gene80949.t1.exon3;Parent=MS.gene80949.t1 |
| chr7.3 | CDS | 90478635 | 90478845 | 90478635 | ID=cds.MS.gene80949.t1;Parent=MS.gene80949.t1 |
| chr7.3 | exon | 90477901 | 90478062 | 90477901 | ID=MS.gene80949.t1.exon4;Parent=MS.gene80949.t1 |
| chr7.3 | CDS | 90477901 | 90478062 | 90477901 | ID=cds.MS.gene80949.t1;Parent=MS.gene80949.t1 |
| chr7.3 | exon | 90477034 | 90477153 | 90477034 | ID=MS.gene80949.t1.exon5;Parent=MS.gene80949.t1 |
| chr7.3 | CDS | 90477034 | 90477153 | 90477034 | ID=cds.MS.gene80949.t1;Parent=MS.gene80949.t1 |
| chr7.3 | exon | 90476727 | 90476912 | 90476727 | ID=MS.gene80949.t1.exon6;Parent=MS.gene80949.t1 |
| chr7.3 | CDS | 90476727 | 90476912 | 90476727 | ID=cds.MS.gene80949.t1;Parent=MS.gene80949.t1 |
| Gene Sequence |
| Protein sequence |
