Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038413.t1 | RHN57772.1 | 95.2 | 207 | 10 | 0 | 1 | 207 | 42 | 248 | 2.60E-100 | 374.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038413.t1 | Q9ZV02 | 56.7 | 203 | 87 | 1 | 3 | 205 | 24 | 225 | 1.6e-58 | 227.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038413.t1 | G7K8I6 | 95.2 | 207 | 10 | 0 | 1 | 207 | 22 | 228 | 1.9e-100 | 374.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79463 | MS.gene038413 | PPI |
| MS.gene46188 | MS.gene038413 | PPI |
| MS.gene55828 | MS.gene038413 | PPI |
| MS.gene044269 | MS.gene038413 | PPI |
| MS.gene030474 | MS.gene038413 | PPI |
| MS.gene25769 | MS.gene038413 | PPI |
| MS.gene69746 | MS.gene038413 | PPI |
| MS.gene048962 | MS.gene038413 | PPI |
| MS.gene000529 | MS.gene038413 | PPI |
| MS.gene063278 | MS.gene038413 | PPI |
| MS.gene90281 | MS.gene038413 | PPI |
| MS.gene70529 | MS.gene038413 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038413.t1 | MTR_5g092600 | 95.169 | 207 | 10 | 0 | 1 | 207 | 22 | 228 | 2.24e-141 | 395 |
| MS.gene038413.t1 | MTR_7g007490 | 82.609 | 207 | 36 | 0 | 1 | 207 | 23 | 229 | 1.86e-119 | 339 |
| MS.gene038413.t1 | MTR_8g096320 | 55.122 | 205 | 91 | 1 | 3 | 206 | 24 | 228 | 7.60e-77 | 231 |
| MS.gene038413.t1 | MTR_5g067530 | 53.093 | 194 | 91 | 0 | 1 | 194 | 23 | 216 | 9.31e-69 | 211 |
| MS.gene038413.t1 | MTR_7g405730 | 56.250 | 192 | 84 | 0 | 3 | 194 | 24 | 215 | 9.33e-69 | 211 |
| MS.gene038413.t1 | MTR_7g405710 | 55.224 | 201 | 90 | 0 | 1 | 201 | 22 | 222 | 1.49e-68 | 211 |
| MS.gene038413.t1 | MTR_3g098910 | 49.485 | 194 | 97 | 1 | 3 | 195 | 24 | 217 | 2.35e-65 | 204 |
| MS.gene038413.t1 | MTR_2g007890 | 50.739 | 203 | 96 | 2 | 1 | 200 | 25 | 226 | 3.12e-65 | 203 |
| MS.gene038413.t1 | MTR_8g096320 | 52.601 | 173 | 81 | 1 | 35 | 206 | 1 | 173 | 1.67e-58 | 183 |
| MS.gene038413.t1 | MTR_8g096310 | 45.361 | 194 | 105 | 1 | 3 | 195 | 24 | 217 | 5.87e-57 | 181 |
| MS.gene038413.t1 | MTR_3g098930 | 52.000 | 175 | 81 | 3 | 1 | 173 | 23 | 196 | 2.37e-55 | 175 |
| MS.gene038413.t1 | MTR_1g029380 | 42.584 | 209 | 113 | 3 | 3 | 207 | 20 | 225 | 1.50e-49 | 161 |
| MS.gene038413.t1 | MTR_3g089125 | 42.512 | 207 | 111 | 3 | 3 | 207 | 20 | 220 | 1.72e-49 | 161 |
| MS.gene038413.t1 | MTR_2g436310 | 38.571 | 210 | 123 | 1 | 3 | 206 | 20 | 229 | 8.98e-49 | 159 |
| MS.gene038413.t1 | MTR_3g080990 | 39.614 | 207 | 122 | 2 | 3 | 206 | 23 | 229 | 2.65e-42 | 143 |
| MS.gene038413.t1 | MTR_8g099730 | 35.922 | 206 | 129 | 2 | 3 | 205 | 33 | 238 | 6.78e-42 | 142 |
| MS.gene038413.t1 | MTR_6g007633 | 40.097 | 207 | 119 | 4 | 3 | 205 | 23 | 228 | 1.22e-41 | 141 |
| MS.gene038413.t1 | MTR_6g007637 | 41.624 | 197 | 110 | 4 | 3 | 195 | 24 | 219 | 2.88e-41 | 140 |
| MS.gene038413.t1 | MTR_6g007623 | 39.512 | 205 | 118 | 5 | 3 | 202 | 20 | 223 | 3.26e-40 | 137 |
| MS.gene038413.t1 | MTR_8g042490 | 36.548 | 197 | 122 | 2 | 3 | 197 | 29 | 224 | 5.57e-37 | 129 |
| MS.gene038413.t1 | MTR_1g028460 | 34.826 | 201 | 127 | 1 | 3 | 199 | 21 | 221 | 9.96e-36 | 126 |
| MS.gene038413.t1 | MTR_2g073190 | 35.644 | 202 | 127 | 2 | 3 | 202 | 29 | 229 | 2.39e-34 | 129 |
| MS.gene038413.t1 | MTR_4g106990 | 34.975 | 203 | 127 | 2 | 8 | 205 | 35 | 237 | 8.17e-33 | 118 |
| MS.gene038413.t1 | MTR_3g090950 | 31.455 | 213 | 134 | 4 | 3 | 207 | 21 | 229 | 2.02e-32 | 117 |
| MS.gene038413.t1 | MTR_3g090940 | 32.323 | 198 | 128 | 3 | 3 | 195 | 21 | 217 | 3.19e-31 | 114 |
| MS.gene038413.t1 | MTR_8g099730 | 33.333 | 174 | 113 | 2 | 35 | 205 | 1 | 174 | 1.30e-29 | 108 |
| MS.gene038413.t1 | MTR_6g007610 | 30.455 | 220 | 132 | 6 | 4 | 207 | 24 | 238 | 4.05e-23 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038413.t1 | AT2G39060 | 56.650 | 203 | 87 | 1 | 3 | 205 | 24 | 225 | 6.47e-73 | 221 |
| MS.gene038413.t1 | AT5G13170 | 50.971 | 206 | 100 | 1 | 3 | 207 | 26 | 231 | 1.92e-71 | 219 |
| MS.gene038413.t1 | AT5G50790 | 54.872 | 195 | 88 | 0 | 4 | 198 | 25 | 219 | 4.27e-71 | 218 |
| MS.gene038413.t1 | AT3G48740 | 52.062 | 194 | 93 | 0 | 3 | 196 | 26 | 219 | 1.42e-68 | 211 |
| MS.gene038413.t1 | AT5G23660 | 51.295 | 193 | 94 | 0 | 3 | 195 | 26 | 218 | 4.09e-67 | 207 |
| MS.gene038413.t1 | AT5G50800 | 51.456 | 206 | 98 | 2 | 3 | 207 | 24 | 228 | 1.99e-66 | 206 |
| MS.gene038413.t1 | AT4G25010 | 51.456 | 206 | 99 | 1 | 3 | 207 | 24 | 229 | 6.68e-65 | 202 |
| MS.gene038413.t1 | AT1G21460 | 44.444 | 207 | 110 | 3 | 3 | 207 | 20 | 223 | 3.01e-51 | 166 |
| MS.gene038413.t1 | AT4G15920 | 38.889 | 198 | 112 | 3 | 3 | 195 | 20 | 213 | 4.88e-46 | 152 |
| MS.gene038413.t1 | AT3G16690 | 35.149 | 202 | 128 | 2 | 3 | 202 | 20 | 220 | 1.54e-42 | 143 |
| MS.gene038413.t1 | AT3G16690 | 35.678 | 199 | 125 | 2 | 3 | 199 | 55 | 252 | 2.72e-42 | 143 |
| MS.gene038413.t1 | AT4G10850 | 36.408 | 206 | 128 | 2 | 3 | 205 | 25 | 230 | 1.75e-41 | 141 |
| MS.gene038413.t1 | AT5G40260 | 40.541 | 222 | 107 | 7 | 3 | 205 | 23 | 238 | 1.80e-40 | 138 |
| MS.gene038413.t1 | AT1G21460 | 43.017 | 179 | 99 | 2 | 3 | 179 | 20 | 197 | 2.91e-40 | 136 |
| MS.gene038413.t1 | AT5G53190 | 39.698 | 199 | 114 | 3 | 3 | 196 | 21 | 218 | 4.49e-40 | 137 |
| MS.gene038413.t1 | AT5G62850 | 36.019 | 211 | 125 | 4 | 3 | 207 | 23 | 229 | 8.45e-40 | 136 |
| MS.gene038413.t1 | AT1G66770 | 34.615 | 208 | 129 | 3 | 3 | 205 | 25 | 230 | 3.94e-35 | 125 |
| MS.gene038413.t1 | AT5G40260 | 41.622 | 185 | 91 | 5 | 3 | 176 | 23 | 201 | 1.57e-33 | 119 |
| MS.gene038413.t1 | AT3G14770 | 33.971 | 209 | 119 | 4 | 3 | 202 | 29 | 227 | 4.07e-33 | 119 |
| MS.gene038413.t1 | AT3G28007 | 39.691 | 194 | 109 | 4 | 3 | 191 | 23 | 213 | 2.29e-30 | 112 |
| MS.gene038413.t1 | AT5G62850 | 36.364 | 176 | 102 | 4 | 3 | 172 | 23 | 194 | 2.40e-29 | 108 |
| MS.gene038413.t1 | AT3G16690 | 31.783 | 129 | 85 | 2 | 3 | 129 | 20 | 147 | 1.59e-17 | 77.4 |
Find 39 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTGTTATTTGTTTATTA+TGG | 0.184490 | 5.4:-73352030 | MS.gene038413:CDS |
| TCTTAGCATTCTTGTATATT+AGG | 0.197181 | 5.4:+73350699 | None:intergenic |
| TGCTGCTCCTTTAAGTATAA+TGG | 0.227004 | 5.4:-73351234 | MS.gene038413:intron |
| CATATATGATGTACATTATT+AGG | 0.227731 | 5.4:+73351938 | None:intergenic |
| GCAAATACCATTATACTTAA+AGG | 0.257369 | 5.4:+73351227 | None:intergenic |
| CTTATCACAATCAATTCTAT+TGG | 0.293122 | 5.4:-73351982 | MS.gene038413:CDS |
| TTTCTTGTAAATTGAATAGA+AGG | 0.294119 | 5.4:+73352104 | None:intergenic |
| TCCTTCCGTGTTCAAGTTGT+GGG | 0.304618 | 5.4:-73351290 | MS.gene038413:CDS |
| AATGGGTTGGGATTTCTATT+AGG | 0.308152 | 5.4:-73350743 | MS.gene038413:CDS |
| CAATTCTATTGGATGTGTTA+TGG | 0.325357 | 5.4:-73351971 | MS.gene038413:CDS |
| TGACAAGGATAAGTACATTA+TGG | 0.330649 | 5.4:-73350880 | MS.gene038413:intron |
| ATTGTGGACATAGGAGGTTT+TGG | 0.370193 | 5.4:-73351350 | MS.gene038413:CDS |
| TTCTATTATTAGCTGCCAAA+TGG | 0.384265 | 5.4:-73350761 | MS.gene038413:intron |
| CTAAGAAGTGTAACCACATA+TGG | 0.390300 | 5.4:+73352054 | None:intergenic |
| TATTAGCTGCCAAATGGGTT+GGG | 0.425304 | 5.4:-73350755 | MS.gene038413:intron |
| TTCCTTCCGTGTTCAAGTTG+TGG | 0.438689 | 5.4:-73351291 | MS.gene038413:CDS |
| AGAAACAATGACAATGGAAA+TGG | 0.442224 | 5.4:+73350942 | None:intergenic |
| AATAGAAATCCCAACCCATT+TGG | 0.446671 | 5.4:+73350746 | None:intergenic |
| TCTATTATTAGCTGCCAAAT+GGG | 0.458759 | 5.4:-73350760 | MS.gene038413:intron |
| TTATTAGCTGCCAAATGGGT+TGG | 0.471221 | 5.4:-73350756 | MS.gene038413:intron |
| ATTTGTACTACTTTCAACAT+TGG | 0.476847 | 5.4:-73351263 | MS.gene038413:CDS |
| GTTTCATTCAATCCCATATG+TGG | 0.477368 | 5.4:-73352067 | MS.gene038413:CDS |
| TGAATTGCAGATATCCACTT+TGG | 0.495123 | 5.4:-73351384 | MS.gene038413:intron |
| TTGATACTAATTGTGGACAT+AGG | 0.498447 | 5.4:-73351359 | MS.gene038413:CDS |
| TGTACATCATATATGCTCCT+AGG | 0.524172 | 5.4:-73351930 | MS.gene038413:CDS |
| TTGTAAATTGAATAGAAGGT+TGG | 0.536740 | 5.4:+73352108 | None:intergenic |
| ATCACCACCTTCATTGTGAA+AGG | 0.537205 | 5.4:-73351314 | MS.gene038413:CDS |
| TTACTATCTGCGCCACCATG+TGG | 0.563450 | 5.4:-73350920 | MS.gene038413:CDS |
| ATACTAATTGTGGACATAGG+AGG | 0.571727 | 5.4:-73351356 | MS.gene038413:CDS |
| TAAGAAGTGTAACCACATAT+GGG | 0.576058 | 5.4:+73352055 | None:intergenic |
| CCCCACAACTTGAACACGGA+AGG | 0.579110 | 5.4:+73351289 | None:intergenic |
| TTTCTATGGTCTCTTTGACA+AGG | 0.585997 | 5.4:-73350895 | MS.gene038413:CDS |
| CCTTCCGTGTTCAAGTTGTG+GGG | 0.592412 | 5.4:-73351289 | MS.gene038413:CDS |
| GAAGGAACCTTTCACAATGA+AGG | 0.595094 | 5.4:+73351307 | None:intergenic |
| AATTAGTATCAAAACCAAAG+TGG | 0.598827 | 5.4:+73351370 | None:intergenic |
| ATAGTAAGAAACAATGACAA+TGG | 0.604975 | 5.4:+73350936 | None:intergenic |
| ATATGCTCCTAGGAAGCTCA+AGG | 0.625074 | 5.4:-73351920 | MS.gene038413:intron |
| GGAACCTTTCACAATGAAGG+TGG | 0.665031 | 5.4:+73351310 | None:intergenic |
| TCAACCCCACAACTTGAACA+CGG | 0.685979 | 5.4:+73351285 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAGAAAAATTCATTAAT+AGG | + | chr5.4:73352056-73352075 | None:intergenic | 10.0% |
| !!! | AAGAAAGATTATTTTTATTA+TGG | + | chr5.4:73350993-73351012 | None:intergenic | 10.0% |
| !!! | CATAAAATTATGATATTTTA+AGG | + | chr5.4:73351724-73351743 | None:intergenic | 10.0% |
| !! | TACTTACTAAAATTAAAGAT+GGG | - | chr5.4:73351054-73351073 | MS.gene038413:intron | 15.0% |
| !! | TCTATAATAATTTGAGAATA+TGG | + | chr5.4:73351344-73351363 | None:intergenic | 15.0% |
| !! | TTAACTATATATCAGATTAA+TGG | + | chr5.4:73351691-73351710 | None:intergenic | 15.0% |
| !! | TTACTTACTAAAATTAAAGA+TGG | - | chr5.4:73351053-73351072 | MS.gene038413:intron | 15.0% |
| !!! | AATTTTTCTTTTATGATGTA+TGG | - | chr5.4:73352063-73352082 | MS.gene038413:CDS | 15.0% |
| !!! | ACATTGTTATTTGTTTATTA+TGG | - | chr5.4:73350851-73350870 | MS.gene038413:intron | 15.0% |
| !!! | TTTTATGCAAAAAAATCATA+TGG | - | chr5.4:73351737-73351756 | MS.gene038413:intron | 15.0% |
| !! | ACTTACTAAAATTAAAGATG+GGG | - | chr5.4:73351055-73351074 | MS.gene038413:intron | 20.0% |
| !! | ATTGATTGTGATAAGAAAAA+TGG | + | chr5.4:73350894-73350913 | None:intergenic | 20.0% |
| !! | CATATATGATGTACATTATT+AGG | + | chr5.4:73350946-73350965 | None:intergenic | 20.0% |
| !! | TATATGTTTCATTGAATGAA+AGG | - | chr5.4:73351847-73351866 | MS.gene038413:intron | 20.0% |
| !! | TTTCTTGTAAATTGAATAGA+AGG | + | chr5.4:73350780-73350799 | None:intergenic | 20.0% |
| ! | AATTAGTATCAAAACCAAAG+TGG | + | chr5.4:73351514-73351533 | None:intergenic | 25.0% |
| ! | AATTGGAATAGCTACAATAA+TGG | + | chr5.4:73351794-73351813 | None:intergenic | 25.0% |
| ! | AATTTGTAAATGAATTGCAG+AGG | - | chr5.4:73351883-73351902 | MS.gene038413:intron | 25.0% |
| ! | ACAAGAAAAAATCATCTGAA+GGG | - | chr5.4:73350792-73350811 | MS.gene038413:intron | 25.0% |
| ! | ACTATTGCAGATGTTAAAAT+TGG | + | chr5.4:73351099-73351118 | None:intergenic | 25.0% |
| ! | ATAGTAAGAAACAATGACAA+TGG | + | chr5.4:73351948-73351967 | None:intergenic | 25.0% |
| ! | ATTTGTACTACTTTCAACAT+TGG | - | chr5.4:73351618-73351637 | MS.gene038413:intron | 25.0% |
| ! | CTTATCACAATCAATTCTAT+TGG | - | chr5.4:73350899-73350918 | MS.gene038413:CDS | 25.0% |
| ! | GCAAATACCATTATACTTAA+AGG | + | chr5.4:73351657-73351676 | None:intergenic | 25.0% |
| ! | TACAAGAAAAAATCATCTGA+AGG | - | chr5.4:73350791-73350810 | MS.gene038413:intron | 25.0% |
| ! | TCTTAGCATTCTTGTATATT+AGG | + | chr5.4:73352185-73352204 | None:intergenic | 25.0% |
| ! | TTGTAAATTGAATAGAAGGT+TGG | + | chr5.4:73350776-73350795 | None:intergenic | 25.0% |
| ! | TTTAATATAACCACATGTGT+CGG | + | chr5.4:73351316-73351335 | None:intergenic | 25.0% |
| !!! | TTTGGTTTTGATACTAATTG+TGG | - | chr5.4:73351515-73351534 | MS.gene038413:intron | 25.0% |
| AGAAACAATGACAATGGAAA+TGG | + | chr5.4:73351942-73351961 | None:intergenic | 30.0% | |
| AGCATATATCCATCTTACTA+AGG | + | chr5.4:73351426-73351445 | None:intergenic | 30.0% | |
| AGTAAGATGGATATATGCTT+AGG | - | chr5.4:73351427-73351446 | MS.gene038413:intron | 30.0% | |
| CAATACTACAAATATCTTGC+AGG | - | chr5.4:73350750-73350769 | MS.gene038413:CDS | 30.0% | |
| CAATTCTATTGGATGTGTTA+TGG | - | chr5.4:73350910-73350929 | MS.gene038413:CDS | 30.0% | |
| TCTATTATTAGCTGCCAAAT+GGG | - | chr5.4:73352121-73352140 | MS.gene038413:intron | 30.0% | |
| TGACAAGGATAAGTACATTA+TGG | - | chr5.4:73352001-73352020 | MS.gene038413:CDS | 30.0% | |
| TGTGATAAGAAAAATGGCAT+TGG | + | chr5.4:73350888-73350907 | None:intergenic | 30.0% | |
| TGTGTAAATCCTTAGTAAGA+TGG | - | chr5.4:73351414-73351433 | MS.gene038413:intron | 30.0% | |
| TTCTATTATTAGCTGCCAAA+TGG | - | chr5.4:73352120-73352139 | MS.gene038413:intron | 30.0% | |
| TTGATACTAATTGTGGACAT+AGG | - | chr5.4:73351522-73351541 | MS.gene038413:intron | 30.0% | |
| ! | GTGTCACTACTAGAAAAAAT+TGG | + | chr5.4:73351811-73351830 | None:intergenic | 30.0% |
| ! | TAAGAAGTGTAACCACATAT+GGG | + | chr5.4:73350829-73350848 | None:intergenic | 30.0% |
| AATAGAAATCCCAACCCATT+TGG | + | chr5.4:73352138-73352157 | None:intergenic | 35.0% | |
| ATACTAATTGTGGACATAGG+AGG | - | chr5.4:73351525-73351544 | MS.gene038413:intron | 35.0% | |
| GTTTCATTCAATCCCATATG+TGG | - | chr5.4:73350814-73350833 | MS.gene038413:intron | 35.0% | |
| TGAATTGCAGATATCCACTT+TGG | - | chr5.4:73351497-73351516 | MS.gene038413:intron | 35.0% | |
| TGCTGCTCCTTTAAGTATAA+TGG | - | chr5.4:73351647-73351666 | MS.gene038413:intron | 35.0% | |
| TGTAAATGAATTGCAGAGGA+AGG | - | chr5.4:73351887-73351906 | MS.gene038413:intron | 35.0% | |
| TGTACATCATATATGCTCCT+AGG | - | chr5.4:73350951-73350970 | MS.gene038413:CDS | 35.0% | |
| TTTCTATGGTCTCTTTGACA+AGG | - | chr5.4:73351986-73352005 | MS.gene038413:CDS | 35.0% | |
| ! | CTAAGAAGTGTAACCACATA+TGG | + | chr5.4:73350830-73350849 | None:intergenic | 35.0% |
| !! | AATGGGTTGGGATTTCTATT+AGG | - | chr5.4:73352138-73352157 | MS.gene038413:intron | 35.0% |
| !! | GAAAAATGGCATTGGTCTTT+AGG | + | chr5.4:73350880-73350899 | None:intergenic | 35.0% |
| ACCATAGAAAAACCACATGG+TGG | + | chr5.4:73351976-73351995 | None:intergenic | 40.0% | |
| AGCAAGAGCAGATTAAAGTG+TGG | - | chr5.4:73351455-73351474 | MS.gene038413:intron | 40.0% | |
| ATCACCACCTTCATTGTGAA+AGG | - | chr5.4:73351567-73351586 | MS.gene038413:intron | 40.0% | |
| GAAGGAACCTTTCACAATGA+AGG | + | chr5.4:73351577-73351596 | None:intergenic | 40.0% | |
| GAGAATGAAGAGACAAACGT+AGG | + | chr5.4:73351016-73351035 | None:intergenic | 40.0% | |
| GAGACCATAGAAAAACCACA+TGG | + | chr5.4:73351979-73351998 | None:intergenic | 40.0% | |
| GTTTGAACGTGCACTTACAA+TGG | + | chr5.4:73350679-73350698 | None:intergenic | 40.0% | |
| TTATTAGCTGCCAAATGGGT+TGG | - | chr5.4:73352125-73352144 | MS.gene038413:intron | 40.0% | |
| ! | ATGTTAGTGTCACTGTGTCA+GGG | - | chr5.4:73351371-73351390 | MS.gene038413:CDS | 40.0% |
| ! | ATTGTGGACATAGGAGGTTT+TGG | - | chr5.4:73351531-73351550 | MS.gene038413:intron | 40.0% |
| ! | GTTTTTACCTTGAGCTTCCT+AGG | + | chr5.4:73350971-73350990 | None:intergenic | 40.0% |
| ! | TATTAGCTGCCAAATGGGTT+GGG | - | chr5.4:73352126-73352145 | MS.gene038413:intron | 40.0% |
| !! | TGTCCAACTGAGCTTTAAGT+CGG | + | chr5.4:73351282-73351301 | None:intergenic | 40.0% |
| AGCAATTGCATGCACTCTAG+AGG | + | chr5.4:73351212-73351231 | None:intergenic | 45.0% | |
| ATATGCTCCTAGGAAGCTCA+AGG | - | chr5.4:73350961-73350980 | MS.gene038413:CDS | 45.0% | |
| GGAACCTTTCACAATGAAGG+TGG | + | chr5.4:73351574-73351593 | None:intergenic | 45.0% | |
| TAACACAACTCCGACACATG+TGG | - | chr5.4:73351303-73351322 | MS.gene038413:CDS | 45.0% | |
| TCAACCCCACAACTTGAACA+CGG | + | chr5.4:73351599-73351618 | None:intergenic | 45.0% | |
| ! | CATGTTAGTGTCACTGTGTC+AGG | - | chr5.4:73351370-73351389 | MS.gene038413:CDS | 45.0% |
| ! | GCCACCATGTGGTTTTTCTA+TGG | - | chr5.4:73351972-73351991 | MS.gene038413:CDS | 45.0% |
| !! | TCCTTCCGTGTTCAAGTTGT+GGG | - | chr5.4:73351591-73351610 | MS.gene038413:intron | 45.0% |
| !! | TTCCTTCCGTGTTCAAGTTG+TGG | - | chr5.4:73351590-73351609 | MS.gene038413:intron | 45.0% |
| !!! | ATAAAATTATGATATTTTAA+GGG | + | chr5.4:73351723-73351742 | None:intergenic | 5.0% |
| TTACTATCTGCGCCACCATG+TGG | - | chr5.4:73351961-73351980 | MS.gene038413:CDS | 50.0% | |
| !! | CCTTCCGTGTTCAAGTTGTG+GGG | - | chr5.4:73351592-73351611 | MS.gene038413:intron | 50.0% |
| !! | GCACCGACTTAAAGCTCAGT+TGG | - | chr5.4:73351276-73351295 | MS.gene038413:CDS | 50.0% |
| CCCCACAACTTGAACACGGA+AGG | + | chr5.4:73351595-73351614 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 73350661 | 73352242 | 73350661 | ID=MS.gene038413 |
| chr5.4 | mRNA | 73350661 | 73352242 | 73350661 | ID=MS.gene038413.t1;Parent=MS.gene038413 |
| chr5.4 | exon | 73352223 | 73352242 | 73352223 | ID=MS.gene038413.t1.exon1;Parent=MS.gene038413.t1 |
| chr5.4 | CDS | 73352223 | 73352242 | 73352223 | ID=cds.MS.gene038413.t1;Parent=MS.gene038413.t1 |
| chr5.4 | exon | 73351921 | 73352131 | 73351921 | ID=MS.gene038413.t1.exon2;Parent=MS.gene038413.t1 |
| chr5.4 | CDS | 73351921 | 73352131 | 73351921 | ID=cds.MS.gene038413.t1;Parent=MS.gene038413.t1 |
| chr5.4 | exon | 73351235 | 73351396 | 73351235 | ID=MS.gene038413.t1.exon3;Parent=MS.gene038413.t1 |
| chr5.4 | CDS | 73351235 | 73351396 | 73351235 | ID=cds.MS.gene038413.t1;Parent=MS.gene038413.t1 |
| chr5.4 | exon | 73350881 | 73351000 | 73350881 | ID=MS.gene038413.t1.exon4;Parent=MS.gene038413.t1 |
| chr5.4 | CDS | 73350881 | 73351000 | 73350881 | ID=cds.MS.gene038413.t1;Parent=MS.gene038413.t1 |
| chr5.4 | exon | 73350661 | 73350771 | 73350661 | ID=MS.gene038413.t1.exon5;Parent=MS.gene038413.t1 |
| chr5.4 | CDS | 73350661 | 73350771 | 73350661 | ID=cds.MS.gene038413.t1;Parent=MS.gene038413.t1 |
| Gene Sequence |
| Protein sequence |
