Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54502.t1 | XP_013447478.1 | 97.6 | 254 | 5 | 1 | 1 | 254 | 1 | 253 | 6.90E-127 | 463.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54502.t1 | Q9FPN0 | 64.8 | 210 | 73 | 1 | 8 | 217 | 8 | 216 | 4.3e-69 | 262.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54502.t1 | A0A072TVM1 | 97.6 | 254 | 5 | 1 | 1 | 254 | 1 | 253 | 4.9e-127 | 463.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene54502 | MS.gene044269 | PPI |
| MS.gene54502 | MS.gene000529 | PPI |
| MS.gene54502 | MS.gene70529 | PPI |
| MS.gene063278 | MS.gene54502 | PPI |
| MS.gene54502 | MS.gene46188 | PPI |
| MS.gene54502 | MS.gene048962 | PPI |
| MS.gene54502 | MS.gene25769 | PPI |
| MS.gene55828 | MS.gene54502 | PPI |
| MS.gene54502 | MS.gene90281 | PPI |
| MS.gene030474 | MS.gene54502 | PPI |
| MS.gene69746 | MS.gene54502 | PPI |
| MS.gene54502 | MS.gene79463 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54502.t1 | MTR_7g007490 | 97.638 | 254 | 5 | 1 | 1 | 254 | 1 | 253 | 0.0 | 498 |
| MS.gene54502.t1 | MTR_5g092600 | 78.431 | 255 | 51 | 3 | 1 | 254 | 1 | 252 | 9.30e-142 | 397 |
| MS.gene54502.t1 | MTR_8g096320 | 52.814 | 231 | 108 | 1 | 3 | 232 | 2 | 232 | 6.73e-85 | 254 |
| MS.gene54502.t1 | MTR_5g067530 | 54.717 | 212 | 95 | 1 | 6 | 216 | 5 | 216 | 6.93e-77 | 234 |
| MS.gene54502.t1 | MTR_7g405730 | 46.693 | 257 | 118 | 1 | 3 | 240 | 2 | 258 | 2.72e-75 | 229 |
| MS.gene54502.t1 | MTR_3g098910 | 47.826 | 253 | 125 | 4 | 1 | 252 | 1 | 247 | 4.90e-75 | 231 |
| MS.gene54502.t1 | MTR_7g405710 | 53.394 | 221 | 103 | 0 | 3 | 223 | 2 | 222 | 1.04e-74 | 229 |
| MS.gene54502.t1 | MTR_2g007890 | 46.923 | 260 | 122 | 4 | 1 | 253 | 3 | 253 | 2.04e-72 | 223 |
| MS.gene54502.t1 | MTR_8g096310 | 46.694 | 242 | 123 | 4 | 6 | 246 | 5 | 241 | 8.01e-71 | 219 |
| MS.gene54502.t1 | MTR_3g098930 | 50.505 | 198 | 95 | 3 | 4 | 199 | 4 | 200 | 5.74e-60 | 188 |
| MS.gene54502.t1 | MTR_8g096320 | 50.847 | 177 | 86 | 1 | 57 | 232 | 1 | 177 | 1.91e-57 | 182 |
| MS.gene54502.t1 | MTR_1g029380 | 41.593 | 226 | 124 | 4 | 12 | 232 | 7 | 229 | 1.70e-51 | 168 |
| MS.gene54502.t1 | MTR_3g089125 | 37.553 | 237 | 143 | 3 | 7 | 240 | 2 | 236 | 3.78e-51 | 167 |
| MS.gene54502.t1 | MTR_2g436310 | 37.557 | 221 | 135 | 1 | 14 | 231 | 9 | 229 | 5.82e-50 | 164 |
| MS.gene54502.t1 | MTR_8g099730 | 34.413 | 247 | 155 | 3 | 1 | 240 | 9 | 255 | 1.08e-44 | 151 |
| MS.gene54502.t1 | MTR_6g007633 | 37.500 | 240 | 132 | 6 | 12 | 247 | 10 | 235 | 1.80e-42 | 145 |
| MS.gene54502.t1 | MTR_3g080990 | 35.391 | 243 | 147 | 2 | 14 | 254 | 12 | 246 | 2.50e-42 | 145 |
| MS.gene54502.t1 | MTR_6g007623 | 37.327 | 217 | 132 | 3 | 12 | 224 | 7 | 223 | 1.22e-41 | 142 |
| MS.gene54502.t1 | MTR_6g007637 | 37.321 | 209 | 128 | 2 | 12 | 217 | 11 | 219 | 2.80e-40 | 139 |
| MS.gene54502.t1 | MTR_8g042490 | 36.620 | 213 | 128 | 3 | 14 | 222 | 18 | 227 | 7.35e-39 | 135 |
| MS.gene54502.t1 | MTR_1g028460 | 31.818 | 242 | 148 | 2 | 11 | 248 | 7 | 235 | 4.56e-36 | 129 |
| MS.gene54502.t1 | MTR_2g073190 | 34.123 | 211 | 136 | 2 | 14 | 222 | 18 | 227 | 2.82e-34 | 130 |
| MS.gene54502.t1 | MTR_3g090950 | 29.958 | 237 | 160 | 2 | 6 | 238 | 2 | 236 | 9.84e-33 | 120 |
| MS.gene54502.t1 | MTR_4g106990 | 37.097 | 186 | 115 | 1 | 30 | 213 | 35 | 220 | 2.35e-32 | 119 |
| MS.gene54502.t1 | MTR_3g090940 | 29.804 | 255 | 152 | 4 | 6 | 248 | 2 | 241 | 6.63e-32 | 117 |
| MS.gene54502.t1 | MTR_8g099730 | 34.270 | 178 | 112 | 2 | 68 | 240 | 14 | 191 | 7.67e-29 | 108 |
| MS.gene54502.t1 | MTR_6g007610 | 29.114 | 237 | 141 | 7 | 12 | 229 | 10 | 238 | 1.80e-24 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54502.t1 | AT2G39060 | 57.959 | 245 | 97 | 3 | 7 | 251 | 6 | 244 | 6.20e-89 | 264 |
| MS.gene54502.t1 | AT5G50790 | 51.915 | 235 | 110 | 2 | 3 | 234 | 2 | 236 | 7.89e-82 | 247 |
| MS.gene54502.t1 | AT5G13170 | 49.558 | 226 | 113 | 1 | 5 | 229 | 6 | 231 | 2.34e-78 | 238 |
| MS.gene54502.t1 | AT3G48740 | 50.901 | 222 | 109 | 0 | 5 | 226 | 6 | 227 | 4.16e-76 | 233 |
| MS.gene54502.t1 | AT5G50800 | 50.213 | 235 | 114 | 2 | 3 | 234 | 2 | 236 | 7.60e-75 | 229 |
| MS.gene54502.t1 | AT5G23660 | 48.472 | 229 | 117 | 1 | 4 | 231 | 4 | 232 | 3.43e-73 | 225 |
| MS.gene54502.t1 | AT4G25010 | 51.802 | 222 | 106 | 1 | 9 | 229 | 8 | 229 | 3.10e-71 | 220 |
| MS.gene54502.t1 | AT1G21460 | 40.486 | 247 | 134 | 5 | 12 | 253 | 7 | 245 | 3.09e-53 | 172 |
| MS.gene54502.t1 | AT4G15920 | 38.197 | 233 | 120 | 5 | 14 | 232 | 9 | 231 | 2.45e-50 | 165 |
| MS.gene54502.t1 | AT3G16690 | 35.238 | 210 | 133 | 2 | 14 | 221 | 9 | 217 | 7.11e-44 | 148 |
| MS.gene54502.t1 | AT3G16690 | 35.238 | 210 | 133 | 2 | 14 | 221 | 44 | 252 | 1.10e-43 | 149 |
| MS.gene54502.t1 | AT4G10850 | 34.703 | 219 | 140 | 2 | 12 | 227 | 12 | 230 | 1.40e-43 | 148 |
| MS.gene54502.t1 | AT5G53190 | 35.458 | 251 | 153 | 5 | 8 | 252 | 4 | 251 | 1.04e-42 | 146 |
| MS.gene54502.t1 | AT5G62850 | 33.333 | 228 | 144 | 4 | 7 | 229 | 5 | 229 | 1.56e-41 | 142 |
| MS.gene54502.t1 | AT1G21460 | 41.146 | 192 | 110 | 2 | 12 | 201 | 7 | 197 | 3.20e-41 | 140 |
| MS.gene54502.t1 | AT5G40260 | 37.238 | 239 | 125 | 6 | 8 | 227 | 6 | 238 | 4.00e-40 | 139 |
| MS.gene54502.t1 | AT1G66770 | 38.813 | 219 | 120 | 5 | 12 | 221 | 12 | 225 | 2.15e-39 | 137 |
| MS.gene54502.t1 | AT3G14770 | 33.333 | 222 | 129 | 4 | 14 | 226 | 18 | 229 | 5.91e-36 | 128 |
| MS.gene54502.t1 | AT5G40260 | 38.579 | 197 | 105 | 4 | 8 | 194 | 6 | 196 | 8.41e-34 | 121 |
| MS.gene54502.t1 | AT3G28007 | 38.498 | 213 | 123 | 4 | 12 | 219 | 10 | 219 | 1.83e-33 | 122 |
| MS.gene54502.t1 | AT5G62850 | 33.333 | 195 | 122 | 4 | 5 | 194 | 3 | 194 | 1.83e-32 | 118 |
| MS.gene54502.t1 | AT3G16690 | 31.492 | 181 | 107 | 4 | 14 | 192 | 9 | 174 | 1.51e-21 | 89.4 |
Find 45 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACGTACCTTAAGCTTTC+TGG | 0.138382 | 7.4:+91555943 | None:intergenic |
| GCATTGTTATTGCTATATTA+TGG | 0.220036 | 7.4:-91556061 | MS.gene54502:CDS |
| GAAAGTACCATTATGCTTAA+AGG | 0.226693 | 7.4:+91555192 | None:intergenic |
| TATCAGCTACCAAATGTGTT+AGG | 0.276385 | 7.4:-91554168 | MS.gene54502:intron |
| TGCTGCTCCTTTAAGCATAA+TGG | 0.278814 | 7.4:-91555199 | MS.gene54502:intron |
| TGACAAGGATAATTACATTA+TGG | 0.279673 | 7.4:-91554297 | MS.gene54502:intron |
| TTTCTTGTAAATTGAATAGA+AGG | 0.294119 | 7.4:+91556135 | None:intergenic |
| TCCTTTCGTGTTCATGCTGT+TGG | 0.318048 | 7.4:-91555255 | MS.gene54502:CDS |
| AGGAACAATGATAAAGAAAA+TGG | 0.318887 | 7.4:+91554359 | None:intergenic |
| ATTGATTGTGATAATCAAAA+TGG | 0.322958 | 7.4:+91556021 | None:intergenic |
| TCAAAATGGCATTGGTCTTA+AGG | 0.334310 | 7.4:+91556035 | None:intergenic |
| ATTATCACAATCAATTGTAT+TGG | 0.347338 | 7.4:-91556013 | MS.gene54502:CDS |
| GTTGCTGACCTAGGAGGTCT+TGG | 0.368055 | 7.4:-91555315 | MS.gene54502:CDS |
| CATATATGATGTACATGATT+AGG | 0.387583 | 7.4:+91555969 | None:intergenic |
| TCTTAGCATTCTTGTATATG+AGG | 0.388872 | 7.4:+91554112 | None:intergenic |
| TTACGTACCTTAAGCTTTCT+GGG | 0.402611 | 7.4:+91555944 | None:intergenic |
| CTAAGAAGTGCAACTACATA+TGG | 0.405787 | 7.4:+91556085 | None:intergenic |
| AGGTAACATTGTCTCATTCA+TGG | 0.424995 | 7.4:-91556288 | MS.gene54502:CDS |
| CCTTTCGTGTTCATGCTGTT+GGG | 0.431442 | 7.4:-91555254 | MS.gene54502:CDS |
| AACAGAAACCCTAACACATT+TGG | 0.433431 | 7.4:+91554159 | None:intergenic |
| ATATGCTCCCAGAAAGCTTA+AGG | 0.441764 | 7.4:-91555951 | MS.gene54502:intron |
| ATCAGCTACCAAATGTGTTA+GGG | 0.455453 | 7.4:-91554167 | MS.gene54502:intron |
| AACCATCTCGTGATCAGAAA+AGG | 0.467285 | 7.4:+91556976 | None:intergenic |
| TTTATACTTGTTGCTGACCT+AGG | 0.468356 | 7.4:-91555324 | MS.gene54502:CDS |
| CATGATAATCACCTTCTTTG+TGG | 0.472006 | 7.4:-91555286 | MS.gene54502:CDS |
| CAAGAACATGGTTGTGATGA+TGG | 0.481586 | 7.4:-91554057 | MS.gene54502:CDS |
| ACATGGTGGCACAGAGAGTA+AGG | 0.483061 | 7.4:+91554339 | None:intergenic |
| TGAATTGCAGATATCCACTT+TGG | 0.495123 | 7.4:-91555349 | MS.gene54502:intron |
| ATTTCAACCACCACTACTGA+AGG | 0.512650 | 7.4:+91554018 | None:intergenic |
| AATGTGTTAGGGTTTCTGTT+TGG | 0.517325 | 7.4:-91554156 | MS.gene54502:CDS |
| TTGTAAATTGAATAGAAGGT+TGG | 0.536740 | 7.4:+91556139 | None:intergenic |
| TGGTCAAGCCAAGACCTCCT+AGG | 0.539989 | 7.4:+91555307 | None:intergenic |
| CACAAAGAAGGTGATTATCA+TGG | 0.546705 | 7.4:+91555287 | None:intergenic |
| GGAGGACTTCACCACAAAGA+AGG | 0.572054 | 7.4:+91555275 | None:intergenic |
| TGTGATAATCAAAATGGCAT+TGG | 0.577404 | 7.4:+91556027 | None:intergenic |
| TTTCTATGGTCTCTTTGACA+AGG | 0.585997 | 7.4:-91554312 | MS.gene54502:CDS |
| TTACTCTCTGTGCCACCATG+TGG | 0.592006 | 7.4:-91554337 | MS.gene54502:CDS |
| AGAGGACTTACAATGGTGCT+AGG | 0.596356 | 7.4:+91556261 | None:intergenic |
| ATACTTGTTGCTGACCTAGG+AGG | 0.597667 | 7.4:-91555321 | MS.gene54502:CDS |
| AGAGTTCCCTTCAGTAGTGG+TGG | 0.599805 | 7.4:-91554025 | MS.gene54502:CDS |
| ACTGAGCAGCAGCAAGAACA+TGG | 0.605926 | 7.4:-91554069 | MS.gene54502:CDS |
| CCCAACAGCATGAACACGAA+AGG | 0.607543 | 7.4:+91555254 | None:intergenic |
| AACAGCATGAACACGAAAGG+AGG | 0.617910 | 7.4:+91555257 | None:intergenic |
| ACAAGAGTTCCCTTCAGTAG+TGG | 0.628149 | 7.4:-91554028 | MS.gene54502:CDS |
| TTTCAACCACCACTACTGAA+GGG | 0.651912 | 7.4:+91554019 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTACATATGTTAAAAT+TGG | + | chr7.4:91555182-91555201 | None:intergenic | 10.0% |
| !!! | GAATATTACTATTTTTTTTT+GGG | - | chr7.4:91554782-91554801 | MS.gene54502:intron | 10.0% |
| !!! | TGAATATTACTATTTTTTTT+TGG | - | chr7.4:91554781-91554800 | MS.gene54502:intron | 10.0% |
| !! | AAAGACAAAAAAAATGAAAT+TGG | - | chr7.4:91556333-91556352 | MS.gene54502:intron | 15.0% |
| !! | AATTAAGTATATAAGATGAA+TGG | + | chr7.4:91555827-91555846 | None:intergenic | 15.0% |
| !! | ACACATCAATAAAAAAAAAT+TGG | + | chr7.4:91556514-91556533 | None:intergenic | 15.0% |
| !! | ATATTAATTATGGAAAAATG+AGG | - | chr7.4:91554176-91554195 | MS.gene54502:intron | 15.0% |
| !! | ATTCACTAAAAATAAAAGAA+AGG | + | chr7.4:91554558-91554577 | None:intergenic | 15.0% |
| !! | CACATCAATAAAAAAAAATT+GGG | + | chr7.4:91556513-91556532 | None:intergenic | 15.0% |
| !! | CGAAAGAAAAATTAATTAAT+AGG | + | chr7.4:91556740-91556759 | None:intergenic | 15.0% |
| !! | TAATAAATCCAAAGAAAAAA+AGG | + | chr7.4:91555547-91555566 | None:intergenic | 15.0% |
| !!! | AAATAAAGATTTTGTGATTA+TGG | + | chr7.4:91555066-91555085 | None:intergenic | 15.0% |
| !!! | TAATTTAACTTTTTCTTGTA+GGG | - | chr7.4:91556435-91556454 | MS.gene54502:intron | 15.0% |
| !!! | TACTTTCTAATATTTTTCAA+GGG | - | chr7.4:91555980-91555999 | MS.gene54502:CDS | 15.0% |
| !!! | TATTTTTAGTGAATACATTA+AGG | - | chr7.4:91554564-91554583 | MS.gene54502:intron | 15.0% |
| !!! | TTCTATTTTTTCATTCTAAT+CGG | - | chr7.4:91554292-91554311 | MS.gene54502:intron | 15.0% |
| !!! | TTTATATACCTTTTTTTCTT+TGG | - | chr7.4:91555536-91555555 | MS.gene54502:intron | 15.0% |
| !! | AAAAGTGAAAACAAATCAAA+TGG | - | chr7.4:91555902-91555921 | MS.gene54502:intron | 20.0% |
| !! | AAAGACAAAAAACATGAATT+TGG | + | chr7.4:91556402-91556421 | None:intergenic | 20.0% |
| !! | ATCTTGGTATTACATATATT+AGG | + | chr7.4:91555364-91555383 | None:intergenic | 20.0% |
| !! | ATTATCACAATCAATTGTAT+TGG | - | chr7.4:91554969-91554988 | MS.gene54502:intron | 20.0% |
| !! | ATTGATTGTGATAATCAAAA+TGG | + | chr7.4:91554964-91554983 | None:intergenic | 20.0% |
| !! | GATTATATATATATAACGTG+TGG | - | chr7.4:91555591-91555610 | MS.gene54502:intron | 20.0% |
| !! | TATAACATCAAAGTTGAAAA+TGG | + | chr7.4:91554108-91554127 | None:intergenic | 20.0% |
| !! | TTACTTAATTTATTTGAGAG+AGG | + | chr7.4:91554742-91554761 | None:intergenic | 20.0% |
| !! | TTTCTTGTAAATTGAATAGA+AGG | + | chr7.4:91554850-91554869 | None:intergenic | 20.0% |
| !!! | ACTAATCCAATTTTGTTTAA+TGG | - | chr7.4:91556484-91556503 | MS.gene54502:intron | 20.0% |
| !!! | CTAATTTAACTTTTTCTTGT+AGG | - | chr7.4:91556434-91556453 | MS.gene54502:intron | 20.0% |
| !!! | GTACTTTCTAATATTTTTCA+AGG | - | chr7.4:91555979-91555998 | MS.gene54502:CDS | 20.0% |
| !!! | TGTTTTTTGTCTTTAATTAC+TGG | - | chr7.4:91556408-91556427 | MS.gene54502:intron | 20.0% |
| ! | AAAGACTGCAATGTTAAAAA+TGG | + | chr7.4:91555764-91555783 | None:intergenic | 25.0% |
| ! | AACAAGTATAAAAACCAAAG+TGG | + | chr7.4:91555650-91555669 | None:intergenic | 25.0% |
| ! | AAGAAAGATTAACACAAACA+TGG | + | chr7.4:91555512-91555531 | None:intergenic | 25.0% |
| ! | ACAAGAAAAAATCATCTGAA+GGG | - | chr7.4:91554862-91554881 | MS.gene54502:intron | 25.0% |
| ! | ACACTTTCAATATGAAATCT+TGG | + | chr7.4:91555380-91555399 | None:intergenic | 25.0% |
| ! | AGGAACAATGATAAAGAAAA+TGG | + | chr7.4:91556626-91556645 | None:intergenic | 25.0% |
| ! | CATATATGATGTACATGATT+AGG | + | chr7.4:91555016-91555035 | None:intergenic | 25.0% |
| ! | CTCAGTTAAAACAAATCAAA+TGG | - | chr7.4:91555865-91555884 | MS.gene54502:intron | 25.0% |
| ! | GTTAAGAATATGTTCAGAAT+AGG | + | chr7.4:91556071-91556090 | None:intergenic | 25.0% |
| ! | TACAAGAAAAAATCATCTGA+AGG | - | chr7.4:91554861-91554880 | MS.gene54502:intron | 25.0% |
| ! | TAGAGCTCACATATTAATTA+TGG | - | chr7.4:91554166-91554185 | MS.gene54502:intron | 25.0% |
| ! | TAGTGCATGTAAAATTAAGA+TGG | + | chr7.4:91556283-91556302 | None:intergenic | 25.0% |
| ! | TCAACACTTTACAACTAAAT+TGG | - | chr7.4:91556374-91556393 | MS.gene54502:intron | 25.0% |
| ! | TGACAAGGATAATTACATTA+TGG | - | chr7.4:91556685-91556704 | MS.gene54502:intron | 25.0% |
| ! | TTGTAAATTGAATAGAAGGT+TGG | + | chr7.4:91554846-91554865 | None:intergenic | 25.0% |
| !! | ATCAACTACAACTTGTATTT+TGG | - | chr7.4:91556213-91556232 | MS.gene54502:intron | 25.0% |
| !! | GCATTGTTATTGCTATATTA+TGG | - | chr7.4:91554921-91554940 | MS.gene54502:intron | 25.0% |
| !!! | CATTTGATTTGTTTTAACTG+AGG | + | chr7.4:91555867-91555886 | None:intergenic | 25.0% |
| AAACATAAAGAATGAGAACC+AGG | + | chr7.4:91554660-91554679 | None:intergenic | 30.0% | |
| AATTTGTACATGAATTGCAG+AGG | - | chr7.4:91556567-91556586 | MS.gene54502:intron | 30.0% | |
| ACAAGAAAAAACACTCCTAA+GGG | + | chr7.4:91555298-91555317 | None:intergenic | 30.0% | |
| AGAAAAGATTGGAGTAAGAA+TGG | + | chr7.4:91554075-91554094 | None:intergenic | 30.0% | |
| ATGTTACCTAGACACAAAAA+AGG | + | chr7.4:91554683-91554702 | None:intergenic | 30.0% | |
| CTATAATCGCAAATTAGAGA+CGG | + | chr7.4:91555218-91555237 | None:intergenic | 30.0% | |
| GAAAAGATTGGAGTAAGAAT+GGG | + | chr7.4:91554074-91554093 | None:intergenic | 30.0% | |
| GTAGTTTATAACACTCCTAA+GGG | + | chr7.4:91555331-91555350 | None:intergenic | 30.0% | |
| TCTTAGCATTCTTGTATATG+AGG | + | chr7.4:91556873-91556892 | None:intergenic | 30.0% | |
| TGTAGTTTATAACACTCCTA+AGG | + | chr7.4:91555332-91555351 | None:intergenic | 30.0% | |
| TGTGATAATCAAAATGGCAT+TGG | + | chr7.4:91554958-91554977 | None:intergenic | 30.0% | |
| !! | CAAAATTGGATTAGTCATGA+AGG | + | chr7.4:91556479-91556498 | None:intergenic | 30.0% |
| !! | GAAAGTACCATTATGCTTAA+AGG | + | chr7.4:91555793-91555812 | None:intergenic | 30.0% |
| !! | TTTGTTATTCTATCTCTTGC+AGG | - | chr7.4:91554820-91554839 | MS.gene54502:intron | 30.0% |
| !!! | ACAACTTGTATTTTGGAACA+TGG | - | chr7.4:91556220-91556239 | MS.gene54502:intron | 30.0% |
| !!! | ATGTTTCCTTTTTTGTGTCT+AGG | - | chr7.4:91554674-91554693 | MS.gene54502:intron | 30.0% |
| !!! | GTTTTAACTGAGGTGAATTT+GGG | + | chr7.4:91555857-91555876 | None:intergenic | 30.0% |
| !!! | TGTTTTAACTGAGGTGAATT+TGG | + | chr7.4:91555858-91555877 | None:intergenic | 30.0% |
| AACAGAAACCCTAACACATT+TGG | + | chr7.4:91556826-91556845 | None:intergenic | 35.0% | |
| AATGTGTTAGGGTTTCTGTT+TGG | - | chr7.4:91556826-91556845 | MS.gene54502:intron | 35.0% | |
| AGGTAACATTGTCTCATTCA+TGG | - | chr7.4:91554694-91554713 | MS.gene54502:intron | 35.0% | |
| ATCAGCTACCAAATGTGTTA+GGG | - | chr7.4:91556815-91556834 | MS.gene54502:intron | 35.0% | |
| ATCGTACTAACTCATGTTCT+AGG | + | chr7.4:91555574-91555593 | None:intergenic | 35.0% | |
| ATTACGTACCTTAAGCTTTC+TGG | + | chr7.4:91555042-91555061 | None:intergenic | 35.0% | |
| ATTTGAGAGAGGACTTACAA+TGG | + | chr7.4:91554731-91554750 | None:intergenic | 35.0% | |
| CACAAAGAAGGTGATTATCA+TGG | + | chr7.4:91555698-91555717 | None:intergenic | 35.0% | |
| CACAAGAAAAAACACTCCTA+AGG | + | chr7.4:91555299-91555318 | None:intergenic | 35.0% | |
| CATGATAATCACCTTCTTTG+TGG | - | chr7.4:91555696-91555715 | MS.gene54502:intron | 35.0% | |
| CGACATGTATTTAGAAACGA+AGG | + | chr7.4:91556019-91556038 | None:intergenic | 35.0% | |
| GGGTCACCATTAAACAAAAT+TGG | + | chr7.4:91556493-91556512 | None:intergenic | 35.0% | |
| GTGCAGTGAAAAGAAAAGAT+TGG | + | chr7.4:91554086-91554105 | None:intergenic | 35.0% | |
| TATCAGCTACCAAATGTGTT+AGG | - | chr7.4:91556814-91556833 | MS.gene54502:intron | 35.0% | |
| TGAATTGCAGATATCCACTT+TGG | - | chr7.4:91555633-91555652 | MS.gene54502:intron | 35.0% | |
| TTACGTACCTTAAGCTTTCT+GGG | + | chr7.4:91555041-91555060 | None:intergenic | 35.0% | |
| TTTCTATGGTCTCTTTGACA+AGG | - | chr7.4:91556670-91556689 | MS.gene54502:intron | 35.0% | |
| ! | CTAAGAAGTGCAACTACATA+TGG | + | chr7.4:91554900-91554919 | None:intergenic | 35.0% |
| ! | TTTATACTTGTTGCTGACCT+AGG | - | chr7.4:91555658-91555677 | MS.gene54502:intron | 35.0% |
| ! | TTTTTCCGTCAAGTAGATAG+AGG | - | chr7.4:91554142-91554161 | MS.gene54502:CDS | 35.0% |
| !! | ACAATGAGAAGTGGTTCTAA+GGG | + | chr7.4:91556253-91556272 | None:intergenic | 35.0% |
| !! | GTTTTGATCTTTGGTCTTCT+AGG | - | chr7.4:91554026-91554045 | MS.gene54502:CDS | 35.0% |
| !! | TCAAAATGGCATTGGTCTTA+AGG | + | chr7.4:91554950-91554969 | None:intergenic | 35.0% |
| AACCATCTCGTGATCAGAAA+AGG | + | chr7.4:91554009-91554028 | None:intergenic | 40.0% | |
| ACCATAGAAAAACCACATGG+TGG | + | chr7.4:91556660-91556679 | None:intergenic | 40.0% | |
| ATATGCTCCCAGAAAGCTTA+AGG | - | chr7.4:91555031-91555050 | MS.gene54502:intron | 40.0% | |
| ATGAGAACCAGGATCATAGT+AGG | + | chr7.4:91554649-91554668 | None:intergenic | 40.0% | |
| ATTTCAACCACCACTACTGA+AGG | + | chr7.4:91556967-91556986 | None:intergenic | 40.0% | |
| CAAGAACATGGTTGTGATGA+TGG | - | chr7.4:91556925-91556944 | MS.gene54502:intron | 40.0% | |
| CTTAGAACCACTTCTCATTG+TGG | - | chr7.4:91556252-91556271 | MS.gene54502:intron | 40.0% | |
| CTTGTGAAAGAGTTACCCTT+AGG | - | chr7.4:91555313-91555332 | MS.gene54502:CDS | 40.0% | |
| GAGACCATAGAAAAACCACA+TGG | + | chr7.4:91556663-91556682 | None:intergenic | 40.0% | |
| TAGTAGGGAAAACTGAAAGC+TGG | + | chr7.4:91554633-91554652 | None:intergenic | 40.0% | |
| TCTAGCCTCTATCTACTTGA+CGG | + | chr7.4:91554150-91554169 | None:intergenic | 40.0% | |
| TGAGAACCAGGATCATAGTA+GGG | + | chr7.4:91554648-91554667 | None:intergenic | 40.0% | |
| TGCTGCTCCTTTAAGCATAA+TGG | - | chr7.4:91555783-91555802 | MS.gene54502:intron | 40.0% | |
| TGTACATGAATTGCAGAGGA+AGG | - | chr7.4:91556571-91556590 | MS.gene54502:intron | 40.0% | |
| TTTCAACCACCACTACTGAA+GGG | + | chr7.4:91556966-91556985 | None:intergenic | 40.0% | |
| ! | AGTTTTCCCTACTATGATCC+TGG | - | chr7.4:91554639-91554658 | MS.gene54502:intron | 40.0% |
| ! | CACAATGAGAAGTGGTTCTA+AGG | + | chr7.4:91556254-91556273 | None:intergenic | 40.0% |
| ! | TTCCTTTTCTGATCACGAGA+TGG | - | chr7.4:91554004-91554023 | MS.gene54502:CDS | 40.0% |
| !!! | CACGAGATGGTTTTGATCTT+TGG | - | chr7.4:91554017-91554036 | MS.gene54502:CDS | 40.0% |
| AACAGCATGAACACGAAAGG+AGG | + | chr7.4:91555728-91555747 | None:intergenic | 45.0% | |
| ACAAGAGTTCCCTTCAGTAG+TGG | - | chr7.4:91556954-91556973 | MS.gene54502:intron | 45.0% | |
| AGAGGACTTACAATGGTGCT+AGG | + | chr7.4:91554724-91554743 | None:intergenic | 45.0% | |
| CACTTACATCAGTGTCGTGT+CGG | + | chr7.4:91555416-91555435 | None:intergenic | 45.0% | |
| CCTTTCGTGTTCATGCTGTT+GGG | - | chr7.4:91555728-91555747 | MS.gene54502:intron | 45.0% | |
| GGATTCTCCACAATGAGAAG+TGG | + | chr7.4:91556262-91556281 | None:intergenic | 45.0% | |
| TCCTTTCGTGTTCATGCTGT+TGG | - | chr7.4:91555727-91555746 | MS.gene54502:intron | 45.0% | |
| ! | ATACTTGTTGCTGACCTAGG+AGG | - | chr7.4:91555661-91555680 | MS.gene54502:intron | 45.0% |
| ! | GCCACCATGTGGTTTTTCTA+TGG | - | chr7.4:91556656-91556675 | MS.gene54502:intron | 45.0% |
| ACATGGTGGCACAGAGAGTA+AGG | + | chr7.4:91556646-91556665 | None:intergenic | 50.0% | |
| ACTGAGCAGCAGCAAGAACA+TGG | - | chr7.4:91556913-91556932 | MS.gene54502:intron | 50.0% | |
| AGAGTTCCCTTCAGTAGTGG+TGG | - | chr7.4:91556957-91556976 | MS.gene54502:CDS | 50.0% | |
| ATCCCCTTGAGCTTAGCTCA+GGG | + | chr7.4:91554224-91554243 | None:intergenic | 50.0% | |
| CCCAACAGCATGAACACGAA+AGG | + | chr7.4:91555731-91555750 | None:intergenic | 50.0% | |
| CGACACGACACTGATGTAAG+TGG | - | chr7.4:91555414-91555433 | MS.gene54502:intron | 50.0% | |
| GAGTGCACGTGATTACCCTT+AGG | - | chr7.4:91555280-91555299 | MS.gene54502:CDS | 50.0% | |
| GGAGGACTTCACCACAAAGA+AGG | + | chr7.4:91555710-91555729 | None:intergenic | 50.0% | |
| GGTAATCACGTGCACTCTAG+AGG | + | chr7.4:91555277-91555296 | None:intergenic | 50.0% | |
| TTACTCTCTGTGCCACCATG+TGG | - | chr7.4:91556645-91556664 | MS.gene54502:intron | 50.0% | |
| AGCCCCTGAGCTAAGCTCAA+GGG | - | chr7.4:91554218-91554237 | MS.gene54502:intron | 55.0% | |
| GATCCCCTTGAGCTTAGCTC+AGG | + | chr7.4:91554225-91554244 | None:intergenic | 55.0% | |
| GTTGCTGACCTAGGAGGTCT+TGG | - | chr7.4:91555667-91555686 | MS.gene54502:intron | 55.0% | |
| TCCCCTTGAGCTTAGCTCAG+GGG | + | chr7.4:91554223-91554242 | None:intergenic | 55.0% | |
| TGGTCAAGCCAAGACCTCCT+AGG | + | chr7.4:91555678-91555697 | None:intergenic | 55.0% | |
| AGGGGCTGGAGTTCGAACTC+TGG | + | chr7.4:91554205-91554224 | None:intergenic | 60.0% | |
| CAGCCCCTGAGCTAAGCTCA+AGG | - | chr7.4:91554217-91554236 | MS.gene54502:intron | 60.0% | |
| CTTGAGCTTAGCTCAGGGGC+TGG | + | chr7.4:91554219-91554238 | None:intergenic | 60.0% | |
| GCCCCTGAGCTAAGCTCAAG+GGG | - | chr7.4:91554219-91554238 | MS.gene54502:intron | 60.0% | |
| !! | GTGTCGTGTCGGTGTCGAGT+TGG | + | chr7.4:91555405-91555424 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 91553999 | 91557005 | 91553999 | ID=MS.gene54502 |
| chr7.4 | mRNA | 91553999 | 91557005 | 91553999 | ID=MS.gene54502.t1;Parent=MS.gene54502 |
| chr7.4 | exon | 91556957 | 91557005 | 91556957 | ID=MS.gene54502.t1.exon1;Parent=MS.gene54502.t1 |
| chr7.4 | CDS | 91556957 | 91557005 | 91556957 | ID=cds.MS.gene54502.t1;Parent=MS.gene54502.t1 |
| chr7.4 | exon | 91556272 | 91556308 | 91556272 | ID=MS.gene54502.t1.exon2;Parent=MS.gene54502.t1 |
| chr7.4 | CDS | 91556272 | 91556308 | 91556272 | ID=cds.MS.gene54502.t1;Parent=MS.gene54502.t1 |
| chr7.4 | exon | 91555952 | 91556162 | 91555952 | ID=MS.gene54502.t1.exon3;Parent=MS.gene54502.t1 |
| chr7.4 | CDS | 91555952 | 91556162 | 91555952 | ID=cds.MS.gene54502.t1;Parent=MS.gene54502.t1 |
| chr7.4 | exon | 91555200 | 91555361 | 91555200 | ID=MS.gene54502.t1.exon4;Parent=MS.gene54502.t1 |
| chr7.4 | CDS | 91555200 | 91555361 | 91555200 | ID=cds.MS.gene54502.t1;Parent=MS.gene54502.t1 |
| chr7.4 | exon | 91554298 | 91554417 | 91554298 | ID=MS.gene54502.t1.exon5;Parent=MS.gene54502.t1 |
| chr7.4 | CDS | 91554298 | 91554417 | 91554298 | ID=cds.MS.gene54502.t1;Parent=MS.gene54502.t1 |
| chr7.4 | exon | 91553999 | 91554184 | 91553999 | ID=MS.gene54502.t1.exon6;Parent=MS.gene54502.t1 |
| chr7.4 | CDS | 91553999 | 91554184 | 91553999 | ID=cds.MS.gene54502.t1;Parent=MS.gene54502.t1 |
| Gene Sequence |
| Protein sequence |
