Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065500.t1 | XP_003617528.1 | 87.9 | 240 | 19 | 1 | 1 | 230 | 9 | 248 | 6.70E-105 | 390.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065500.t1 | Q9FPN0 | 54.9 | 206 | 81 | 3 | 4 | 198 | 12 | 216 | 1.3e-51 | 204.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065500.t1 | G7K8I6 | 87.9 | 240 | 19 | 1 | 1 | 230 | 9 | 248 | 4.8e-105 | 390.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030474 | MS.gene065500 | PPI |
| MS.gene55828 | MS.gene065500 | PPI |
| MS.gene044269 | MS.gene065500 | PPI |
| MS.gene063278 | MS.gene065500 | PPI |
| MS.gene065500 | MS.gene79463 | PPI |
| MS.gene90281 | MS.gene065500 | PPI |
| MS.gene69746 | MS.gene065500 | PPI |
| MS.gene065500 | MS.gene000529 | PPI |
| MS.gene065500 | MS.gene70529 | PPI |
| MS.gene065500 | MS.gene46188 | PPI |
| MS.gene065500 | MS.gene048962 | PPI |
| MS.gene065500 | MS.gene25769 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065500.t1 | MTR_5g092600 | 87.917 | 240 | 19 | 1 | 1 | 230 | 9 | 248 | 5.60e-150 | 417 |
| MS.gene065500.t1 | MTR_7g007490 | 75.410 | 244 | 46 | 4 | 1 | 231 | 9 | 251 | 2.30e-121 | 345 |
| MS.gene065500.t1 | MTR_8g096320 | 49.099 | 222 | 101 | 3 | 4 | 213 | 11 | 232 | 6.24e-68 | 209 |
| MS.gene065500.t1 | MTR_7g405730 | 51.232 | 203 | 88 | 2 | 6 | 197 | 13 | 215 | 1.03e-60 | 192 |
| MS.gene065500.t1 | MTR_7g405710 | 47.845 | 232 | 105 | 3 | 6 | 221 | 13 | 244 | 2.62e-60 | 191 |
| MS.gene065500.t1 | MTR_5g067530 | 48.558 | 208 | 96 | 2 | 1 | 197 | 9 | 216 | 3.25e-60 | 190 |
| MS.gene065500.t1 | MTR_3g098910 | 46.829 | 205 | 97 | 3 | 6 | 198 | 13 | 217 | 1.23e-58 | 187 |
| MS.gene065500.t1 | MTR_2g007890 | 51.381 | 181 | 86 | 2 | 1 | 180 | 11 | 190 | 1.73e-57 | 184 |
| MS.gene065500.t1 | MTR_3g098930 | 49.206 | 189 | 93 | 3 | 4 | 190 | 12 | 199 | 6.36e-56 | 177 |
| MS.gene065500.t1 | MTR_8g096310 | 39.918 | 243 | 126 | 6 | 2 | 230 | 9 | 245 | 3.01e-53 | 173 |
| MS.gene065500.t1 | MTR_8g096320 | 46.893 | 177 | 83 | 2 | 48 | 213 | 1 | 177 | 2.02e-47 | 155 |
| MS.gene065500.t1 | MTR_3g089125 | 37.179 | 234 | 130 | 6 | 3 | 221 | 6 | 237 | 1.00e-41 | 142 |
| MS.gene065500.t1 | MTR_1g029380 | 39.713 | 209 | 109 | 4 | 16 | 210 | 20 | 225 | 2.25e-40 | 139 |
| MS.gene065500.t1 | MTR_2g436310 | 35.135 | 222 | 130 | 3 | 5 | 212 | 8 | 229 | 1.02e-39 | 137 |
| MS.gene065500.t1 | MTR_6g007633 | 38.839 | 224 | 117 | 7 | 4 | 219 | 10 | 221 | 4.99e-37 | 130 |
| MS.gene065500.t1 | MTR_6g007623 | 38.393 | 224 | 118 | 7 | 4 | 219 | 7 | 218 | 1.99e-35 | 125 |
| MS.gene065500.t1 | MTR_6g007637 | 39.048 | 210 | 112 | 6 | 4 | 198 | 11 | 219 | 5.00e-35 | 125 |
| MS.gene065500.t1 | MTR_3g080990 | 36.199 | 221 | 127 | 4 | 5 | 211 | 11 | 231 | 5.90e-34 | 122 |
| MS.gene065500.t1 | MTR_8g099730 | 32.877 | 219 | 133 | 4 | 4 | 208 | 20 | 238 | 4.99e-33 | 120 |
| MS.gene065500.t1 | MTR_1g028460 | 34.375 | 192 | 121 | 2 | 3 | 189 | 7 | 198 | 4.11e-30 | 112 |
| MS.gene065500.t1 | MTR_8g042490 | 33.498 | 203 | 122 | 3 | 10 | 200 | 23 | 224 | 1.27e-27 | 105 |
| MS.gene065500.t1 | MTR_3g090950 | 31.897 | 232 | 129 | 7 | 3 | 213 | 7 | 230 | 2.34e-27 | 105 |
| MS.gene065500.t1 | MTR_3g090940 | 30.660 | 212 | 130 | 5 | 3 | 198 | 7 | 217 | 3.92e-26 | 102 |
| MS.gene065500.t1 | MTR_2g073190 | 32.692 | 208 | 127 | 3 | 10 | 205 | 23 | 229 | 4.94e-25 | 103 |
| MS.gene065500.t1 | MTR_4g106990 | 31.527 | 203 | 124 | 3 | 21 | 208 | 35 | 237 | 1.50e-22 | 92.4 |
| MS.gene065500.t1 | MTR_8g099730 | 29.885 | 174 | 109 | 3 | 48 | 208 | 1 | 174 | 1.09e-19 | 83.6 |
| MS.gene065500.t1 | MTR_6g007610 | 29.487 | 234 | 133 | 8 | 4 | 211 | 10 | 237 | 5.44e-18 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065500.t1 | AT2G39060 | 52.055 | 219 | 93 | 3 | 1 | 208 | 8 | 225 | 8.68e-65 | 202 |
| MS.gene065500.t1 | AT5G13170 | 46.847 | 222 | 106 | 3 | 1 | 210 | 10 | 231 | 1.21e-64 | 202 |
| MS.gene065500.t1 | AT5G50790 | 49.761 | 209 | 94 | 2 | 4 | 201 | 11 | 219 | 1.61e-62 | 197 |
| MS.gene065500.t1 | AT3G48740 | 47.343 | 207 | 98 | 2 | 4 | 199 | 13 | 219 | 3.89e-61 | 193 |
| MS.gene065500.t1 | AT5G23660 | 47.143 | 210 | 100 | 2 | 4 | 202 | 13 | 222 | 2.23e-60 | 191 |
| MS.gene065500.t1 | AT5G50800 | 46.818 | 220 | 104 | 4 | 4 | 211 | 11 | 229 | 6.96e-60 | 190 |
| MS.gene065500.t1 | AT4G25010 | 47.297 | 222 | 105 | 3 | 1 | 210 | 8 | 229 | 1.09e-58 | 187 |
| MS.gene065500.t1 | AT1G21460 | 39.004 | 241 | 131 | 5 | 4 | 231 | 7 | 244 | 4.68e-44 | 148 |
| MS.gene065500.t1 | AT1G21460 | 43.011 | 186 | 102 | 3 | 4 | 186 | 7 | 191 | 1.57e-38 | 133 |
| MS.gene065500.t1 | AT4G15920 | 31.915 | 235 | 140 | 5 | 5 | 223 | 8 | 238 | 7.40e-37 | 129 |
| MS.gene065500.t1 | AT5G40260 | 38.298 | 235 | 109 | 8 | 4 | 208 | 10 | 238 | 3.80e-35 | 125 |
| MS.gene065500.t1 | AT5G53190 | 36.150 | 213 | 119 | 5 | 3 | 199 | 7 | 218 | 1.45e-33 | 122 |
| MS.gene065500.t1 | AT5G40260 | 40.933 | 193 | 96 | 6 | 4 | 184 | 10 | 196 | 1.03e-32 | 118 |
| MS.gene065500.t1 | AT4G10850 | 32.589 | 224 | 137 | 4 | 4 | 213 | 12 | 235 | 1.13e-31 | 117 |
| MS.gene065500.t1 | AT5G62850 | 32.609 | 230 | 133 | 7 | 4 | 216 | 10 | 234 | 2.00e-31 | 115 |
| MS.gene065500.t1 | AT3G16690 | 30.332 | 211 | 133 | 4 | 5 | 202 | 8 | 217 | 2.94e-31 | 115 |
| MS.gene065500.t1 | AT3G16690 | 30.332 | 211 | 133 | 4 | 5 | 202 | 43 | 252 | 4.37e-31 | 115 |
| MS.gene065500.t1 | AT5G62850 | 35.751 | 193 | 113 | 5 | 4 | 189 | 10 | 198 | 5.92e-30 | 111 |
| MS.gene065500.t1 | AT1G66770 | 32.068 | 237 | 143 | 5 | 4 | 224 | 12 | 246 | 9.90e-28 | 106 |
| MS.gene065500.t1 | AT3G14770 | 31.081 | 222 | 123 | 6 | 4 | 205 | 16 | 227 | 8.99e-24 | 95.5 |
| MS.gene065500.t1 | AT3G28007 | 34.156 | 243 | 132 | 8 | 4 | 221 | 10 | 249 | 9.53e-24 | 95.9 |
| MS.gene065500.t1 | AT3G16690 | 29.348 | 184 | 112 | 5 | 5 | 185 | 8 | 176 | 5.86e-17 | 76.6 |
Find 36 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTGTTATTTGTATATTA+TGG | 0.191926 | 5.2:-78206567 | MS.gene065500:CDS |
| TCTTAGCATTCTTGTATATT+AGG | 0.197181 | 5.2:+78205245 | None:intergenic |
| CATATATGATGTACATTATT+AGG | 0.227731 | 5.2:+78206475 | None:intergenic |
| CTTATCACAATCAATTCTAT+TGG | 0.293122 | 5.2:-78206519 | MS.gene065500:CDS |
| TTTCTTGTAAATTGAATAGA+AGG | 0.294119 | 5.2:+78206641 | None:intergenic |
| TCCTTCCGTGTTCAAGTTGT+GGG | 0.304618 | 5.2:-78205829 | MS.gene065500:CDS |
| ACTAATCAGCAGCAAGAATA+TGG | 0.310967 | 5.2:-78205202 | MS.gene065500:CDS |
| CAATTCTATTGGATGTGTTA+TGG | 0.325357 | 5.2:-78206508 | MS.gene065500:CDS |
| TGACAAGGATAAGTACATTA+TGG | 0.328210 | 5.2:-78205422 | MS.gene065500:intron |
| ATTGTGGACATAGGAGGTTT+TGG | 0.381745 | 5.2:-78205889 | MS.gene065500:CDS |
| AACCTCCTATGTCCACAATT+AGG | 0.382091 | 5.2:+78205893 | None:intergenic |
| CTAAGAAGTGTAACCACATA+TGG | 0.390300 | 5.2:+78206591 | None:intergenic |
| TTCCTTCCGTGTTCAAGTTG+TGG | 0.438689 | 5.2:-78205830 | MS.gene065500:CDS |
| AGAAACAATGACAATGGAAA+TGG | 0.442224 | 5.2:+78205484 | None:intergenic |
| ATTTGTACTACTTTCAACAT+TGG | 0.476847 | 5.2:-78205802 | MS.gene065500:CDS |
| GTTTCATTCAATCCCATATG+TGG | 0.477368 | 5.2:-78206604 | MS.gene065500:CDS |
| TGAATTGCAGATATCCACTT+TGG | 0.495123 | 5.2:-78205923 | MS.gene065500:intron |
| TTGATCCTAATTGTGGACAT+AGG | 0.503650 | 5.2:-78205898 | MS.gene065500:CDS |
| TGTACATCATATATGCTCCT+AGG | 0.524172 | 5.2:-78206467 | MS.gene065500:CDS |
| TACAGTGGTTAAAATGAAAG+AGG | 0.529745 | 5.2:-78205149 | MS.gene065500:intron |
| TTGTAAATTGAATAGAAGGT+TGG | 0.536740 | 5.2:+78206645 | None:intergenic |
| ATCACCACCTTCATTGTGAA+AGG | 0.537205 | 5.2:-78205853 | MS.gene065500:CDS |
| ATCCTAATTGTGGACATAGG+AGG | 0.560977 | 5.2:-78205895 | MS.gene065500:CDS |
| TTACTATCTGCGCCACCATG+TGG | 0.563450 | 5.2:-78205462 | MS.gene065500:CDS |
| TAAGAAGTGTAACCACATAT+GGG | 0.576058 | 5.2:+78206592 | None:intergenic |
| CCCCACAACTTGAACACGGA+AGG | 0.579110 | 5.2:+78205828 | None:intergenic |
| TTTCTATGGTCTCTTTGACA+AGG | 0.585997 | 5.2:-78205437 | MS.gene065500:CDS |
| CCTTCCGTGTTCAAGTTGTG+GGG | 0.592412 | 5.2:-78205828 | MS.gene065500:CDS |
| GAAGGAACCTTTCACAATGA+AGG | 0.595094 | 5.2:+78205846 | None:intergenic |
| ATAGTAAGAAACAATGACAA+TGG | 0.604975 | 5.2:+78205478 | None:intergenic |
| CAGCAAGAATATGGTTGTGA+TGG | 0.609120 | 5.2:-78205193 | MS.gene065500:CDS |
| TTGATATACCTAGGAGACCA+AGG | 0.610831 | 5.2:+78207122 | None:intergenic |
| ATATGCTCCTAGGAAGCTCA+AGG | 0.625074 | 5.2:-78206457 | MS.gene065500:intron |
| AATTAGGATCAAAACCAAAG+TGG | 0.628587 | 5.2:+78205909 | None:intergenic |
| GGAACCTTTCACAATGAAGG+TGG | 0.665031 | 5.2:+78205849 | None:intergenic |
| TCAACCCCACAACTTGAACA+CGG | 0.685979 | 5.2:+78205824 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAGTTATAAGATTAATT+CGG | + | chr5.2:78207092-78207111 | None:intergenic | 10.0% |
| !! | TTAACTATATATCATATTAA+TGG | + | chr5.2:78205523-78205542 | None:intergenic | 10.0% |
| !!! | AAGAAAGATTATTTTTATTA+TGG | + | chr5.2:78204827-78204846 | None:intergenic | 10.0% |
| !!! | CATAAAATTATGATATTTTA+AGG | + | chr5.2:78205556-78205575 | None:intergenic | 10.0% |
| !! | AATGGTTTGAATAAATAATA+TGG | + | chr5.2:78207005-78207024 | None:intergenic | 15.0% |
| !! | TAAAAATCACAGTAAAAAAA+TGG | - | chr5.2:78206556-78206575 | MS.gene065500:CDS | 15.0% |
| !! | TAAAAGAAAAATTCACTAAT+AGG | + | chr5.2:78205885-78205904 | None:intergenic | 15.0% |
| !! | TACTTACTAAAATTAAAGAT+GGG | - | chr5.2:78204888-78204907 | MS.gene065500:intron | 15.0% |
| !! | TCTATAATAATTTGAGAATA+TGG | + | chr5.2:78205176-78205195 | None:intergenic | 15.0% |
| !! | TTACTTACTAAAATTAAAGA+TGG | - | chr5.2:78204887-78204906 | MS.gene065500:intron | 15.0% |
| !!! | AATTTTTCTTTTATGATGTA+TGG | - | chr5.2:78205892-78205911 | MS.gene065500:CDS | 15.0% |
| !!! | ACATTGTTATTTGTATATTA+TGG | - | chr5.2:78204685-78204704 | MS.gene065500:intron | 15.0% |
| !!! | TAATTTTATTTGATATACCT+AGG | + | chr5.2:78204142-78204161 | None:intergenic | 15.0% |
| !!! | TATAACAAATGGATTATAAA+TGG | + | chr5.2:78206448-78206467 | None:intergenic | 15.0% |
| !!! | TGTGATTTTTAATGTTTTAA+TGG | + | chr5.2:78206547-78206566 | None:intergenic | 15.0% |
| !!! | TTTTATGCAAAAAAATCATA+TGG | - | chr5.2:78205569-78205588 | MS.gene065500:intron | 15.0% |
| !! | AAGTAGCAAACAAAATTTAA+AGG | + | chr5.2:78204415-78204434 | None:intergenic | 20.0% |
| !! | AATTTGCAAAATAAAAATGC+AGG | + | chr5.2:78207121-78207140 | None:intergenic | 20.0% |
| !! | ACTTACTAAAATTAAAGATG+GGG | - | chr5.2:78204889-78204908 | MS.gene065500:intron | 20.0% |
| !! | ATTGATTGTGATAAGAAAAA+TGG | + | chr5.2:78204728-78204747 | None:intergenic | 20.0% |
| !! | CATATATGATGTACATTATT+AGG | + | chr5.2:78204780-78204799 | None:intergenic | 20.0% |
| !! | TAATATCAGGTTATAACAAA+TGG | + | chr5.2:78206459-78206478 | None:intergenic | 20.0% |
| !! | TATATGTTTCATTGAATGAA+AGG | - | chr5.2:78205676-78205695 | MS.gene065500:intron | 20.0% |
| !! | TATCAAAGTTAAAAACACTT+TGG | - | chr5.2:78206507-78206526 | MS.gene065500:CDS | 20.0% |
| !! | TTTCTTGTAAATTGAATAGA+AGG | + | chr5.2:78204614-78204633 | None:intergenic | 20.0% |
| !!! | ATGTTTAAGATGATGTATTT+AGG | - | chr5.2:78204227-78204246 | MS.gene065500:intron | 20.0% |
| !!! | ATTTTGAATATGTCAAAACA+TGG | - | chr5.2:78204307-78204326 | MS.gene065500:intron | 20.0% |
| !!! | TAACTTTTTTCTTTCTTTTG+TGG | + | chr5.2:78206676-78206695 | None:intergenic | 20.0% |
| !!! | TAATGTTTTAATGGTTGATT+GGG | + | chr5.2:78206538-78206557 | None:intergenic | 20.0% |
| !!! | TTAATGTTTTAATGGTTGAT+TGG | + | chr5.2:78206539-78206558 | None:intergenic | 20.0% |
| !!! | TTGTTTGCTACTTTATATTT+TGG | - | chr5.2:78204422-78204441 | MS.gene065500:intron | 20.0% |
| ! | AAAAATTGGAATAGCTACAA+TGG | + | chr5.2:78205626-78205645 | None:intergenic | 25.0% |
| ! | AATTTGTAAATGAATTGCAG+AGG | - | chr5.2:78205712-78205731 | MS.gene065500:intron | 25.0% |
| ! | ACAAGAAAAAATCATCTGAA+GGG | - | chr5.2:78204626-78204645 | MS.gene065500:intron | 25.0% |
| ! | ACTATTGGAGATGTTAAAAT+TGG | + | chr5.2:78204933-78204952 | None:intergenic | 25.0% |
| ! | AGTTATCTGTTGTTAACTAT+TGG | + | chr5.2:78204948-78204967 | None:intergenic | 25.0% |
| ! | ATAGTAAGAAACAATGACAA+TGG | + | chr5.2:78205777-78205796 | None:intergenic | 25.0% |
| ! | ATTTGTACTACTTTCAACAT+TGG | - | chr5.2:78205450-78205469 | MS.gene065500:CDS | 25.0% |
| ! | CTTATCACAATCAATTCTAT+TGG | - | chr5.2:78204733-78204752 | MS.gene065500:intron | 25.0% |
| ! | TACAAGAAAAAATCATCTGA+AGG | - | chr5.2:78204625-78204644 | MS.gene065500:intron | 25.0% |
| ! | TCTTAGCATTCTTGTATATT+AGG | + | chr5.2:78206010-78206029 | None:intergenic | 25.0% |
| ! | TGAATACATTTATCAAGTCT+TGG | + | chr5.2:78206644-78206663 | None:intergenic | 25.0% |
| ! | TTGTAAATTGAATAGAAGGT+TGG | + | chr5.2:78204610-78204629 | None:intergenic | 25.0% |
| ! | TTTAATATAACCACATGTGT+CGG | + | chr5.2:78205148-78205167 | None:intergenic | 25.0% |
| !! | CTCTTTTTCTTTTTGTCTAT+AGG | - | chr5.2:78204459-78204478 | MS.gene065500:intron | 25.0% |
| !! | GATGTTGCATTGTATTTTAT+AGG | - | chr5.2:78206138-78206157 | MS.gene065500:intron | 25.0% |
| !! | TTTTACCAAATTTGAGTGAA+TGG | + | chr5.2:78207023-78207042 | None:intergenic | 25.0% |
| !!! | AAATGGATTATAAATGGTTG+TGG | + | chr5.2:78206442-78206461 | None:intergenic | 25.0% |
| !!! | GATATTTTAATATCGAAGTG+TGG | + | chr5.2:78206917-78206936 | None:intergenic | 25.0% |
| AATTAGGATCAAAACCAAAG+TGG | + | chr5.2:78205346-78205365 | None:intergenic | 30.0% | |
| AGAAACAATGACAATGGAAA+TGG | + | chr5.2:78205771-78205790 | None:intergenic | 30.0% | |
| CAAAAGTTAACTCTCGAATT+GGG | - | chr5.2:78206293-78206312 | MS.gene065500:intron | 30.0% | |
| CAATACTACAAATATCTTGC+AGG | - | chr5.2:78204584-78204603 | MS.gene065500:intron | 30.0% | |
| CAATTCTATTGGATGTGTTA+TGG | - | chr5.2:78204744-78204763 | MS.gene065500:intron | 30.0% | |
| CAGAATCATATAATACCACA+AGG | - | chr5.2:78206954-78206973 | MS.gene065500:intron | 30.0% | |
| CATGACATCAAAGTTGAAAA+TGG | + | chr5.2:78204204-78204223 | None:intergenic | 30.0% | |
| CTCATCTTGTTCTATATTCA+TGG | + | chr5.2:78206359-78206378 | None:intergenic | 30.0% | |
| GATACGAAAGTCTTAATATC+AGG | + | chr5.2:78206472-78206491 | None:intergenic | 30.0% | |
| GGAAAGAGAGAAAAATGAAT+AGG | + | chr5.2:78206788-78206807 | None:intergenic | 30.0% | |
| GTTTGAAAACACGTTATTCT+TGG | - | chr5.2:78204340-78204359 | MS.gene065500:intron | 30.0% | |
| TACAGTGGTTAAAATGAAAG+AGG | - | chr5.2:78206103-78206122 | MS.gene065500:intron | 30.0% | |
| TACATTTATCAAGTCTTGGT+TGG | + | chr5.2:78206640-78206659 | None:intergenic | 30.0% | |
| TCAAACCATTCACTCAAATT+TGG | - | chr5.2:78207015-78207034 | MS.gene065500:intron | 30.0% | |
| TCTATTATTAGCTGCCAAAT+GGG | - | chr5.2:78205948-78205967 | MS.gene065500:intron | 30.0% | |
| TGACAAGGATAAGTACATTA+TGG | - | chr5.2:78205830-78205849 | MS.gene065500:CDS | 30.0% | |
| TGTGATAAGAAAAATGGCAT+TGG | + | chr5.2:78204722-78204741 | None:intergenic | 30.0% | |
| TGTTTGTGTAAATCCTTAGT+AGG | - | chr5.2:78205242-78205261 | MS.gene065500:CDS | 30.0% | |
| TTCTATTATTAGCTGCCAAA+TGG | - | chr5.2:78205947-78205966 | MS.gene065500:intron | 30.0% | |
| TTGAAAATGGTGTAGTGAAA+AGG | + | chr5.2:78204191-78204210 | None:intergenic | 30.0% | |
| ! | CATTTTCAACTTTGATGTCA+TGG | - | chr5.2:78204202-78204221 | MS.gene065500:intron | 30.0% |
| ! | GTGTCACTACTAGAAAAAAT+TGG | + | chr5.2:78205640-78205659 | None:intergenic | 30.0% |
| ! | GTTTGTTTAAGACTCTTTGA+AGG | + | chr5.2:78206763-78206782 | None:intergenic | 30.0% |
| ! | TAAGAAGTGTAACCACATAT+GGG | + | chr5.2:78204663-78204682 | None:intergenic | 30.0% |
| ! | TTGCATGCAGTAATTTTACA+TGG | - | chr5.2:78206697-78206716 | MS.gene065500:intron | 30.0% |
| !! | CTTTCATTTTAACCACTGTA+GGG | + | chr5.2:78206103-78206122 | None:intergenic | 30.0% |
| !! | TCTTTCATTTTAACCACTGT+AGG | + | chr5.2:78206104-78206123 | None:intergenic | 30.0% |
| !! | TGCTGCTCTTTTAAGTATAA+TGG | - | chr5.2:78205479-78205498 | MS.gene065500:CDS | 30.0% |
| !!! | TTTGGTTTTGATCCTAATTG+TGG | - | chr5.2:78205347-78205366 | MS.gene065500:intron | 30.0% |
| AAATGGTGTAGTGAAAAGGA+TGG | + | chr5.2:78204187-78204206 | None:intergenic | 35.0% | |
| AATAGAAATCCCAACCCATT+TGG | + | chr5.2:78205965-78205984 | None:intergenic | 35.0% | |
| ACTAATCAGCAGCAAGAATA+TGG | - | chr5.2:78206050-78206069 | MS.gene065500:intron | 35.0% | |
| AGCATATATCCATCCTACTA+AGG | + | chr5.2:78205258-78205277 | None:intergenic | 35.0% | |
| AGTAGGATGGATATATGCTT+AGG | - | chr5.2:78205259-78205278 | MS.gene065500:CDS | 35.0% | |
| ATGATGAATGGGATCTTTGA+AGG | + | chr5.2:78206833-78206852 | None:intergenic | 35.0% | |
| CCAAAAGTTAACTCTCGAAT+TGG | - | chr5.2:78206292-78206311 | MS.gene065500:intron | 35.0% | |
| GAGAATGAAGAGACAAAAGT+AGG | + | chr5.2:78204850-78204869 | None:intergenic | 35.0% | |
| GCTGCAAGATTATGATGAAT+GGG | + | chr5.2:78206844-78206863 | None:intergenic | 35.0% | |
| GTTTCATTCAATCCCATATG+TGG | - | chr5.2:78204648-78204667 | MS.gene065500:intron | 35.0% | |
| TGAATTGCAGATATCCACTT+TGG | - | chr5.2:78205329-78205348 | MS.gene065500:intron | 35.0% | |
| TGCTGCAAGATTATGATGAA+TGG | + | chr5.2:78206845-78206864 | None:intergenic | 35.0% | |
| TGTAAATGAATTGCAGAGGA+AGG | - | chr5.2:78205716-78205735 | MS.gene065500:intron | 35.0% | |
| TGTACATCATATATGCTCCT+AGG | - | chr5.2:78204785-78204804 | MS.gene065500:intron | 35.0% | |
| TGTGTAAATCCTTAGTAGGA+TGG | - | chr5.2:78205246-78205265 | MS.gene065500:CDS | 35.0% | |
| TTCAAGTGATCATGAGTGTA+TGG | - | chr5.2:78206181-78206200 | MS.gene065500:intron | 35.0% | |
| TTCTGTACTTCTTATCCTTG+TGG | + | chr5.2:78206972-78206991 | None:intergenic | 35.0% | |
| TTGATCCTAATTGTGGACAT+AGG | - | chr5.2:78205354-78205373 | MS.gene065500:intron | 35.0% | |
| TTTCTATGGTCTCTTTGACA+AGG | - | chr5.2:78205815-78205834 | MS.gene065500:CDS | 35.0% | |
| ! | ATGTTAGTGTCATTGTGTCA+GGG | - | chr5.2:78205203-78205222 | MS.gene065500:CDS | 35.0% |
| ! | CCAATTCGAGAGTTAACTTT+TGG | + | chr5.2:78206295-78206314 | None:intergenic | 35.0% |
| ! | CTAAGAAGTGTAACCACATA+TGG | + | chr5.2:78204664-78204683 | None:intergenic | 35.0% |
| ! | GGGAGAATCTTTTGATGTTT+AGG | + | chr5.2:78206809-78206828 | None:intergenic | 35.0% |
| ! | GTTTAAGACTCTTTGAAGGA+GGG | + | chr5.2:78206759-78206778 | None:intergenic | 35.0% |
| ! | TAATCAGATTTTCCCTACAG+TGG | - | chr5.2:78206088-78206107 | MS.gene065500:intron | 35.0% |
| ! | TGTTTAAGACTCTTTGAAGG+AGG | + | chr5.2:78206760-78206779 | None:intergenic | 35.0% |
| !! | AATGGGTTGGGATTTCTATT+AGG | - | chr5.2:78205965-78205984 | MS.gene065500:intron | 35.0% |
| !! | GAAAAATGGCATTGGTCTTT+AGG | + | chr5.2:78204714-78204733 | None:intergenic | 35.0% |
| !! | GTTTTAATGGTTGATTGGGT+AGG | + | chr5.2:78206534-78206553 | None:intergenic | 35.0% |
| AACCTCCTATGTCCACAATT+AGG | + | chr5.2:78205362-78205381 | None:intergenic | 40.0% | |
| AATTGGGAGTGGGAAATGAA+GGG | - | chr5.2:78206309-78206328 | MS.gene065500:intron | 40.0% | |
| ACCATAGAAAAACCACATGG+TGG | + | chr5.2:78205805-78205824 | None:intergenic | 40.0% | |
| AGCAAGAGCAGATTAAAGTG+TGG | - | chr5.2:78205287-78205306 | MS.gene065500:intron | 40.0% | |
| ATCACCACCTTCATTGTGAA+AGG | - | chr5.2:78205399-78205418 | MS.gene065500:intron | 40.0% | |
| ATCCTAATTGTGGACATAGG+AGG | - | chr5.2:78205357-78205376 | MS.gene065500:intron | 40.0% | |
| CAGCAAGAATATGGTTGTGA+TGG | - | chr5.2:78206059-78206078 | MS.gene065500:intron | 40.0% | |
| GAAGGAACCTTTCACAATGA+AGG | + | chr5.2:78205409-78205428 | None:intergenic | 40.0% | |
| GAGACCATAGAAAAACCACA+TGG | + | chr5.2:78205808-78205827 | None:intergenic | 40.0% | |
| GTGCAAAATGATGCAAGCTT+TGG | + | chr5.2:78206890-78206909 | None:intergenic | 40.0% | |
| GTTTGAACGTGCACTTACAA+TGG | + | chr5.2:78204513-78204532 | None:intergenic | 40.0% | |
| TTAACTCTCGAATTGGGAGT+GGG | - | chr5.2:78206299-78206318 | MS.gene065500:intron | 40.0% | |
| TTATTAGCTGCCAAATGGGT+TGG | - | chr5.2:78205952-78205971 | MS.gene065500:intron | 40.0% | |
| TTGATATACCTAGGAGACCA+AGG | + | chr5.2:78204133-78204152 | None:intergenic | 40.0% | |
| ! | AAAATGATGCAAGCTTTGGC+GGG | + | chr5.2:78206886-78206905 | None:intergenic | 40.0% |
| ! | ATGAATGGGATCTTTGAAGG+AGG | + | chr5.2:78206830-78206849 | None:intergenic | 40.0% |
| ! | ATTGTGGACATAGGAGGTTT+TGG | - | chr5.2:78205363-78205382 | MS.gene065500:intron | 40.0% |
| ! | CAAAATGATGCAAGCTTTGG+CGG | + | chr5.2:78206887-78206906 | None:intergenic | 40.0% |
| ! | CATGTTAGTGTCATTGTGTC+AGG | - | chr5.2:78205202-78205221 | MS.gene065500:CDS | 40.0% |
| ! | GGAGGGAGAAGTTTGTTTAT+AGG | + | chr5.2:78206742-78206761 | None:intergenic | 40.0% |
| ! | GTTTTTACCTTGAGCTTCCT+AGG | + | chr5.2:78204805-78204824 | None:intergenic | 40.0% |
| ! | TATTAGCTGCCAAATGGGTT+GGG | - | chr5.2:78205953-78205972 | MS.gene065500:intron | 40.0% |
| ! | TGAATGGGATCTTTGAAGGA+GGG | + | chr5.2:78206829-78206848 | None:intergenic | 40.0% |
| !! | TGTCCAACTGAGCTTTAAGT+CGG | + | chr5.2:78205114-78205133 | None:intergenic | 40.0% |
| AGCAATTGCATGCACTCTAG+AGG | + | chr5.2:78205044-78205063 | None:intergenic | 45.0% | |
| ATATGCTCCTAGGAAGCTCA+AGG | - | chr5.2:78204795-78204814 | MS.gene065500:intron | 45.0% | |
| GAATTGGGAGTGGGAAATGA+AGG | - | chr5.2:78206308-78206327 | MS.gene065500:intron | 45.0% | |
| GGAACCTTTCACAATGAAGG+TGG | + | chr5.2:78205406-78205425 | None:intergenic | 45.0% | |
| GTTAACTCTCGAATTGGGAG+TGG | - | chr5.2:78206298-78206317 | MS.gene065500:intron | 45.0% | |
| TCAACCCCACAACTTGAACA+CGG | + | chr5.2:78205431-78205450 | None:intergenic | 45.0% | |
| ! | GCCACCATGTGGTTTTTCTA+TGG | - | chr5.2:78205801-78205820 | MS.gene065500:CDS | 45.0% |
| !! | GTTTTGATCCTTGGTCTCCT+AGG | - | chr5.2:78204122-78204141 | MS.gene065500:intron | 45.0% |
| !! | TCCTTCCGTGTTCAAGTTGT+GGG | - | chr5.2:78205423-78205442 | MS.gene065500:CDS | 45.0% |
| !! | TTCCTTCCGTGTTCAAGTTG+TGG | - | chr5.2:78205422-78205441 | MS.gene065500:intron | 45.0% |
| !!! | ATAAAATTATGATATTTTAA+GGG | + | chr5.2:78205555-78205574 | None:intergenic | 5.0% |
| TAACACGACTCCGACACATG+TGG | - | chr5.2:78205135-78205154 | MS.gene065500:intron | 50.0% | |
| TTACTATCTGCGCCACCATG+TGG | - | chr5.2:78205790-78205809 | MS.gene065500:CDS | 50.0% | |
| !! | CCTTCCGTGTTCAAGTTGTG+GGG | - | chr5.2:78205424-78205443 | MS.gene065500:CDS | 50.0% |
| !! | GCACCGACTTAAAGCTCAGT+TGG | - | chr5.2:78205108-78205127 | MS.gene065500:intron | 50.0% |
| CCCCACAACTTGAACACGGA+AGG | + | chr5.2:78205427-78205446 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 78204119 | 78207155 | 78204119 | ID=MS.gene065500 |
| chr5.2 | mRNA | 78204119 | 78207155 | 78204119 | ID=MS.gene065500.t1;Parent=MS.gene065500 |
| chr5.2 | exon | 78207131 | 78207155 | 78207131 | ID=MS.gene065500.t1.exon1;Parent=MS.gene065500.t1 |
| chr5.2 | CDS | 78207131 | 78207155 | 78207131 | ID=cds.MS.gene065500.t1;Parent=MS.gene065500.t1 |
| chr5.2 | exon | 78206760 | 78206793 | 78206760 | ID=MS.gene065500.t1.exon2;Parent=MS.gene065500.t1 |
| chr5.2 | CDS | 78206760 | 78206793 | 78206760 | ID=cds.MS.gene065500.t1;Parent=MS.gene065500.t1 |
| chr5.2 | exon | 78206458 | 78206668 | 78206458 | ID=MS.gene065500.t1.exon3;Parent=MS.gene065500.t1 |
| chr5.2 | CDS | 78206458 | 78206668 | 78206458 | ID=cds.MS.gene065500.t1;Parent=MS.gene065500.t1 |
| chr5.2 | exon | 78205774 | 78205935 | 78205774 | ID=MS.gene065500.t1.exon4;Parent=MS.gene065500.t1 |
| chr5.2 | CDS | 78205774 | 78205935 | 78205774 | ID=cds.MS.gene065500.t1;Parent=MS.gene065500.t1 |
| chr5.2 | exon | 78205423 | 78205542 | 78205423 | ID=MS.gene065500.t1.exon5;Parent=MS.gene065500.t1 |
| chr5.2 | CDS | 78205423 | 78205542 | 78205423 | ID=cds.MS.gene065500.t1;Parent=MS.gene065500.t1 |
| chr5.2 | exon | 78205150 | 78205287 | 78205150 | ID=MS.gene065500.t1.exon6;Parent=MS.gene065500.t1 |
| chr5.2 | CDS | 78205150 | 78205287 | 78205150 | ID=cds.MS.gene065500.t1;Parent=MS.gene065500.t1 |
| chr5.2 | exon | 78204119 | 78204124 | 78204119 | ID=MS.gene065500.t1.exon7;Parent=MS.gene065500.t1 |
| chr5.2 | CDS | 78204119 | 78204124 | 78204119 | ID=cds.MS.gene065500.t1;Parent=MS.gene065500.t1 |
| Gene Sequence |
| Protein sequence |
