Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017178.t1 | XP_003617528.1 | 94.1 | 220 | 13 | 0 | 1 | 220 | 9 | 228 | 8.30E-105 | 389.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017178.t1 | Q9FPN0 | 58.3 | 206 | 84 | 2 | 4 | 208 | 12 | 216 | 7.0e-60 | 231.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017178.t1 | G7K8I6 | 94.1 | 220 | 13 | 0 | 1 | 220 | 9 | 228 | 6.0e-105 | 389.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene017178 | MS.gene25769 | PPI |
| MS.gene030474 | MS.gene017178 | PPI |
| MS.gene017178 | MS.gene90281 | PPI |
| MS.gene063278 | MS.gene017178 | PPI |
| MS.gene017178 | MS.gene79463 | PPI |
| MS.gene55828 | MS.gene017178 | PPI |
| MS.gene017178 | MS.gene044269 | PPI |
| MS.gene017178 | MS.gene69746 | PPI |
| MS.gene017178 | MS.gene000529 | PPI |
| MS.gene017178 | MS.gene70529 | PPI |
| MS.gene017178 | MS.gene46188 | PPI |
| MS.gene017178 | MS.gene048962 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017178.t1 | MTR_5g092600 | 94.091 | 220 | 13 | 0 | 1 | 220 | 9 | 228 | 3.59e-148 | 412 |
| MS.gene017178.t1 | MTR_7g007490 | 82.353 | 221 | 38 | 1 | 1 | 220 | 9 | 229 | 3.09e-125 | 354 |
| MS.gene017178.t1 | MTR_8g096320 | 53.670 | 218 | 99 | 2 | 4 | 219 | 11 | 228 | 5.78e-79 | 237 |
| MS.gene017178.t1 | MTR_7g405710 | 54.245 | 212 | 96 | 1 | 6 | 216 | 13 | 224 | 4.81e-71 | 218 |
| MS.gene017178.t1 | MTR_7g405730 | 55.172 | 203 | 90 | 1 | 6 | 207 | 13 | 215 | 5.19e-71 | 218 |
| MS.gene017178.t1 | MTR_5g067530 | 51.923 | 208 | 99 | 1 | 1 | 207 | 9 | 216 | 1.07e-70 | 217 |
| MS.gene017178.t1 | MTR_2g007890 | 50.230 | 217 | 103 | 3 | 1 | 213 | 11 | 226 | 8.26e-68 | 210 |
| MS.gene017178.t1 | MTR_3g098910 | 49.268 | 205 | 102 | 2 | 6 | 208 | 13 | 217 | 4.52e-67 | 209 |
| MS.gene017178.t1 | MTR_8g096310 | 44.498 | 209 | 114 | 2 | 2 | 208 | 9 | 217 | 1.70e-59 | 188 |
| MS.gene017178.t1 | MTR_8g096320 | 52.601 | 173 | 81 | 1 | 48 | 219 | 1 | 173 | 2.29e-58 | 183 |
| MS.gene017178.t1 | MTR_3g098930 | 50.000 | 186 | 89 | 4 | 4 | 186 | 12 | 196 | 2.58e-56 | 178 |
| MS.gene017178.t1 | MTR_2g436310 | 37.838 | 222 | 131 | 2 | 5 | 219 | 8 | 229 | 9.99e-50 | 162 |
| MS.gene017178.t1 | MTR_1g029380 | 42.584 | 209 | 113 | 3 | 16 | 220 | 20 | 225 | 2.64e-49 | 161 |
| MS.gene017178.t1 | MTR_3g089125 | 42.512 | 207 | 111 | 3 | 16 | 220 | 20 | 220 | 3.10e-49 | 161 |
| MS.gene017178.t1 | MTR_6g007633 | 39.091 | 220 | 128 | 5 | 4 | 218 | 10 | 228 | 3.52e-43 | 145 |
| MS.gene017178.t1 | MTR_8g099730 | 35.616 | 219 | 137 | 3 | 4 | 218 | 20 | 238 | 1.37e-42 | 144 |
| MS.gene017178.t1 | MTR_6g007637 | 40.476 | 210 | 119 | 5 | 4 | 208 | 11 | 219 | 2.08e-42 | 144 |
| MS.gene017178.t1 | MTR_3g080990 | 38.356 | 219 | 131 | 3 | 5 | 219 | 11 | 229 | 2.98e-42 | 144 |
| MS.gene017178.t1 | MTR_6g007623 | 38.991 | 218 | 126 | 6 | 4 | 215 | 7 | 223 | 8.65e-42 | 142 |
| MS.gene017178.t1 | MTR_8g042490 | 36.453 | 203 | 126 | 2 | 10 | 210 | 23 | 224 | 5.53e-37 | 129 |
| MS.gene017178.t1 | MTR_1g028460 | 33.945 | 218 | 139 | 2 | 3 | 215 | 7 | 224 | 6.86e-36 | 127 |
| MS.gene017178.t1 | MTR_2g073190 | 35.577 | 208 | 131 | 2 | 10 | 215 | 23 | 229 | 2.95e-34 | 129 |
| MS.gene017178.t1 | MTR_4g106990 | 34.975 | 203 | 127 | 2 | 21 | 218 | 35 | 237 | 1.82e-32 | 118 |
| MS.gene017178.t1 | MTR_3g090950 | 31.278 | 227 | 143 | 5 | 3 | 220 | 7 | 229 | 2.39e-32 | 118 |
| MS.gene017178.t1 | MTR_3g090940 | 32.075 | 212 | 137 | 4 | 3 | 208 | 7 | 217 | 2.76e-31 | 115 |
| MS.gene017178.t1 | MTR_8g099730 | 33.333 | 174 | 113 | 2 | 48 | 218 | 1 | 174 | 2.02e-29 | 108 |
| MS.gene017178.t1 | MTR_6g007610 | 30.342 | 234 | 141 | 7 | 4 | 220 | 10 | 238 | 2.90e-24 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017178.t1 | AT2G39060 | 56.481 | 216 | 92 | 2 | 4 | 218 | 11 | 225 | 1.45e-75 | 229 |
| MS.gene017178.t1 | AT5G13170 | 49.550 | 222 | 110 | 2 | 1 | 220 | 10 | 231 | 1.48e-74 | 227 |
| MS.gene017178.t1 | AT5G50790 | 53.589 | 209 | 96 | 1 | 4 | 211 | 11 | 219 | 5.97e-73 | 223 |
| MS.gene017178.t1 | AT3G48740 | 51.208 | 207 | 100 | 1 | 4 | 209 | 13 | 219 | 7.88e-71 | 218 |
| MS.gene017178.t1 | AT5G23660 | 49.524 | 210 | 105 | 1 | 4 | 212 | 13 | 222 | 2.21e-69 | 214 |
| MS.gene017178.t1 | AT5G50800 | 50.685 | 219 | 105 | 3 | 4 | 220 | 11 | 228 | 5.00e-69 | 213 |
| MS.gene017178.t1 | AT4G25010 | 50.000 | 222 | 109 | 2 | 1 | 220 | 8 | 229 | 5.07e-67 | 207 |
| MS.gene017178.t1 | AT1G21460 | 43.636 | 220 | 118 | 4 | 4 | 220 | 7 | 223 | 2.63e-51 | 166 |
| MS.gene017178.t1 | AT4G15920 | 37.681 | 207 | 125 | 3 | 5 | 208 | 8 | 213 | 5.30e-47 | 155 |
| MS.gene017178.t1 | AT3G16690 | 34.112 | 214 | 137 | 3 | 5 | 215 | 8 | 220 | 3.15e-43 | 145 |
| MS.gene017178.t1 | AT3G16690 | 34.597 | 211 | 134 | 3 | 5 | 212 | 43 | 252 | 5.12e-43 | 146 |
| MS.gene017178.t1 | AT5G40260 | 40.000 | 235 | 115 | 8 | 4 | 218 | 10 | 238 | 5.41e-42 | 142 |
| MS.gene017178.t1 | AT4G10850 | 35.616 | 219 | 137 | 3 | 4 | 218 | 12 | 230 | 7.95e-42 | 142 |
| MS.gene017178.t1 | AT5G62850 | 35.714 | 224 | 133 | 5 | 4 | 220 | 10 | 229 | 2.43e-41 | 140 |
| MS.gene017178.t1 | AT5G53190 | 38.967 | 213 | 123 | 4 | 3 | 209 | 7 | 218 | 1.68e-40 | 139 |
| MS.gene017178.t1 | AT1G21460 | 42.188 | 192 | 107 | 3 | 4 | 192 | 7 | 197 | 2.44e-40 | 137 |
| MS.gene017178.t1 | AT1G66770 | 34.389 | 221 | 137 | 4 | 4 | 218 | 12 | 230 | 9.22e-36 | 127 |
| MS.gene017178.t1 | AT5G40260 | 40.909 | 198 | 99 | 6 | 4 | 189 | 10 | 201 | 4.32e-35 | 124 |
| MS.gene017178.t1 | AT3G14770 | 33.333 | 222 | 128 | 5 | 4 | 215 | 16 | 227 | 2.19e-33 | 120 |
| MS.gene017178.t1 | AT5G62850 | 35.979 | 189 | 110 | 5 | 4 | 185 | 10 | 194 | 9.03e-31 | 112 |
| MS.gene017178.t1 | AT3G28007 | 38.647 | 207 | 118 | 5 | 4 | 204 | 10 | 213 | 1.31e-30 | 113 |
| MS.gene017178.t1 | AT3G16690 | 30.496 | 141 | 94 | 3 | 5 | 142 | 8 | 147 | 2.23e-18 | 80.1 |
Find 40 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTGTTATTTGTTTATTA+TGG | 0.184490 | 5.3:-74283218 | MS.gene017178:CDS |
| TCTTAGCATTCTTGTATATT+AGG | 0.197181 | 5.3:+74281885 | None:intergenic |
| TGCTGCTCCTTTAAGTATAA+TGG | 0.227004 | 5.3:-74282422 | MS.gene017178:intron |
| CATATATGATGTACATTATT+AGG | 0.227731 | 5.3:+74283126 | None:intergenic |
| GCAAATACCATTATACTTAA+AGG | 0.257369 | 5.3:+74282415 | None:intergenic |
| CTTATCACAATCAATTCTAT+TGG | 0.293122 | 5.3:-74283170 | MS.gene017178:CDS |
| TTTCTTGTAAATTGAATAGA+AGG | 0.294119 | 5.3:+74283292 | None:intergenic |
| TCCTTCCGTGTTCAAGTTGT+GGG | 0.304618 | 5.3:-74282478 | MS.gene017178:CDS |
| AATGGGTTGGGATTTCTATT+AGG | 0.308152 | 5.3:-74281929 | MS.gene017178:CDS |
| CAATTCTATTGGATGTGTTA+TGG | 0.325357 | 5.3:-74283159 | MS.gene017178:CDS |
| TGACAAGGATAAGTACATTA+TGG | 0.330649 | 5.3:-74282068 | MS.gene017178:intron |
| ATTGTGGACATAGGAGGTTT+TGG | 0.370193 | 5.3:-74282538 | MS.gene017178:CDS |
| TTCTATTATTAGCTGCCAAA+TGG | 0.382093 | 5.3:-74281947 | MS.gene017178:intron |
| CTAAGAAGTGTAACCACATA+TGG | 0.390300 | 5.3:+74283242 | None:intergenic |
| TATTAGCTGCCAAATGGGTT+GGG | 0.425304 | 5.3:-74281941 | MS.gene017178:intron |
| TTCCTTCCGTGTTCAAGTTG+TGG | 0.438689 | 5.3:-74282479 | MS.gene017178:CDS |
| AGAAACAATGACAATGGAAA+TGG | 0.442224 | 5.3:+74282130 | None:intergenic |
| AATAGAAATCCCAACCCATT+TGG | 0.446671 | 5.3:+74281932 | None:intergenic |
| TTATTAGCTGCCAAATGGGT+TGG | 0.471221 | 5.3:-74281942 | MS.gene017178:intron |
| ATTTGTACTACTTTCAACAT+TGG | 0.476847 | 5.3:-74282451 | MS.gene017178:CDS |
| GTTTCATTCAATCCCATATG+TGG | 0.477368 | 5.3:-74283255 | MS.gene017178:CDS |
| TCTATTATTAGCTGCCAAAT+GGG | 0.482527 | 5.3:-74281946 | MS.gene017178:intron |
| TGAATTGCAGATATCCACTT+TGG | 0.495123 | 5.3:-74282572 | MS.gene017178:intron |
| TTGATACTAATTGTGGACAT+AGG | 0.498447 | 5.3:-74282547 | MS.gene017178:CDS |
| TGTACATCATATATGCTCCT+AGG | 0.524172 | 5.3:-74283118 | MS.gene017178:CDS |
| TTGTAAATTGAATAGAAGGT+TGG | 0.536740 | 5.3:+74283296 | None:intergenic |
| ATCACCACCTTCATTGTGAA+AGG | 0.537205 | 5.3:-74282502 | MS.gene017178:CDS |
| TTACTATCTGCGCCACCATG+TGG | 0.563450 | 5.3:-74282108 | MS.gene017178:CDS |
| ATACTAATTGTGGACATAGG+AGG | 0.571727 | 5.3:-74282544 | MS.gene017178:CDS |
| TAAGAAGTGTAACCACATAT+GGG | 0.576058 | 5.3:+74283243 | None:intergenic |
| CCCCACAACTTGAACACGGA+AGG | 0.579110 | 5.3:+74282477 | None:intergenic |
| TTTCTATGGTCTCTTTGACA+AGG | 0.585997 | 5.3:-74282083 | MS.gene017178:CDS |
| CCTTCCGTGTTCAAGTTGTG+GGG | 0.592412 | 5.3:-74282477 | MS.gene017178:CDS |
| GAAGGAACCTTTCACAATGA+AGG | 0.595094 | 5.3:+74282495 | None:intergenic |
| AATTAGTATCAAAACCAAAG+TGG | 0.598827 | 5.3:+74282558 | None:intergenic |
| ATAGTAAGAAACAATGACAA+TGG | 0.604975 | 5.3:+74282124 | None:intergenic |
| TTGATATACCTAGGAGACCA+AGG | 0.610831 | 5.3:+74283773 | None:intergenic |
| ATATGCTCCTAGGAAGCTCA+AGG | 0.625074 | 5.3:-74283108 | MS.gene017178:intron |
| GGAACCTTTCACAATGAAGG+TGG | 0.665031 | 5.3:+74282498 | None:intergenic |
| TCAACCCCACAACTTGAACA+CGG | 0.685979 | 5.3:+74282473 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAGAAAAATTCATTAAT+AGG | + | chr5.3:74283618-74283637 | None:intergenic | 10.0% |
| !!! | AAGAAAGATTATTTTTATTA+TGG | + | chr5.3:74282555-74282574 | None:intergenic | 10.0% |
| !!! | CATAAAATTATGATATTTTA+AGG | + | chr5.3:74283286-74283305 | None:intergenic | 10.0% |
| !! | TACTTACTAAAATTAAAGAT+GGG | - | chr5.3:74282616-74282635 | MS.gene017178:intron | 15.0% |
| !! | TCTATAATAATTTGAGAATA+TGG | + | chr5.3:74282906-74282925 | None:intergenic | 15.0% |
| !! | TTAACTATATATCAGATTAA+TGG | + | chr5.3:74283253-74283272 | None:intergenic | 15.0% |
| !! | TTACTTACTAAAATTAAAGA+TGG | - | chr5.3:74282615-74282634 | MS.gene017178:intron | 15.0% |
| !!! | AATTTTTCTTTTATGATGTA+TGG | - | chr5.3:74283625-74283644 | MS.gene017178:intron | 15.0% |
| !!! | ACATTGTTATTTGTTTATTA+TGG | - | chr5.3:74282413-74282432 | MS.gene017178:intron | 15.0% |
| !!! | ATGTTTAAGATGATTTATTT+AGG | - | chr5.3:74281955-74281974 | MS.gene017178:intron | 15.0% |
| !!! | TAATTTTATTTGATATACCT+AGG | + | chr5.3:74281870-74281889 | None:intergenic | 15.0% |
| !!! | TTTTATGCAAAAAAATCATA+TGG | - | chr5.3:74283299-74283318 | MS.gene017178:CDS | 15.0% |
| !! | AAGTAGCAAACAAAATTTAA+AGG | + | chr5.3:74282143-74282162 | None:intergenic | 20.0% |
| !! | ACTTACTAAAATTAAAGATG+GGG | - | chr5.3:74282617-74282636 | MS.gene017178:intron | 20.0% |
| !! | ATTGATTGTGATAAGAAAAA+TGG | + | chr5.3:74282456-74282475 | None:intergenic | 20.0% |
| !! | CATATATGATGTACATTATT+AGG | + | chr5.3:74282508-74282527 | None:intergenic | 20.0% |
| !! | TATATGTTTCATTGAATGAA+AGG | - | chr5.3:74283409-74283428 | MS.gene017178:intron | 20.0% |
| !! | TTTCTTGTAAATTGAATAGA+AGG | + | chr5.3:74282342-74282361 | None:intergenic | 20.0% |
| !!! | ATTTTGAAAATGTCAAAACA+TGG | - | chr5.3:74282035-74282054 | MS.gene017178:intron | 20.0% |
| !!! | TTGTTTGCTACTTTATATTT+TGG | - | chr5.3:74282150-74282169 | MS.gene017178:CDS | 20.0% |
| ! | AATTAGTATCAAAACCAAAG+TGG | + | chr5.3:74283076-74283095 | None:intergenic | 25.0% |
| ! | AATTGGAATAGCTACAATAA+TGG | + | chr5.3:74283356-74283375 | None:intergenic | 25.0% |
| ! | AATTTGTAAATGAATTGCAG+AGG | - | chr5.3:74283445-74283464 | MS.gene017178:intron | 25.0% |
| ! | ACAAGAAAAAATCATCTGAA+GGG | - | chr5.3:74282354-74282373 | MS.gene017178:intron | 25.0% |
| ! | ACTATTGCAGATGTTAAAAT+TGG | + | chr5.3:74282661-74282680 | None:intergenic | 25.0% |
| ! | ATAGTAAGAAACAATGACAA+TGG | + | chr5.3:74283510-74283529 | None:intergenic | 25.0% |
| ! | ATTTGTACTACTTTCAACAT+TGG | - | chr5.3:74283180-74283199 | MS.gene017178:CDS | 25.0% |
| ! | CTTATCACAATCAATTCTAT+TGG | - | chr5.3:74282461-74282480 | MS.gene017178:CDS | 25.0% |
| ! | GCAAATACCATTATACTTAA+AGG | + | chr5.3:74283219-74283238 | None:intergenic | 25.0% |
| ! | GTTTGAAAACACATTATTCT+TGG | - | chr5.3:74282068-74282087 | MS.gene017178:intron | 25.0% |
| ! | TACAAGAAAAAATCATCTGA+AGG | - | chr5.3:74282353-74282372 | MS.gene017178:intron | 25.0% |
| ! | TCTTAGCATTCTTGTATATT+AGG | + | chr5.3:74283749-74283768 | None:intergenic | 25.0% |
| ! | TTGTAAATTGAATAGAAGGT+TGG | + | chr5.3:74282338-74282357 | None:intergenic | 25.0% |
| ! | TTTAATATAACCACATGTGT+CGG | + | chr5.3:74282878-74282897 | None:intergenic | 25.0% |
| !!! | TTTGGTTTTGATACTAATTG+TGG | - | chr5.3:74283077-74283096 | MS.gene017178:intron | 25.0% |
| AGAAACAATGACAATGGAAA+TGG | + | chr5.3:74283504-74283523 | None:intergenic | 30.0% | |
| CAATACTACAAATATCTTGC+AGG | - | chr5.3:74282312-74282331 | MS.gene017178:intron | 30.0% | |
| CAATTCTATTGGATGTGTTA+TGG | - | chr5.3:74282472-74282491 | MS.gene017178:CDS | 30.0% | |
| CATGACATCAAAGTTGAAAA+TGG | + | chr5.3:74281932-74281951 | None:intergenic | 30.0% | |
| TCTATTATTAGCTGCCAAAT+GGG | - | chr5.3:74283685-74283704 | MS.gene017178:intron | 30.0% | |
| TGACAAGGATAAGTACATTA+TGG | - | chr5.3:74283563-74283582 | MS.gene017178:intron | 30.0% | |
| TGTGATAAGAAAAATGGCAT+TGG | + | chr5.3:74282450-74282469 | None:intergenic | 30.0% | |
| TGTTTGTGTAAATCCTTAGT+AGG | - | chr5.3:74282972-74282991 | MS.gene017178:intron | 30.0% | |
| TTCTATTATTAGCTGCCAAA+TGG | - | chr5.3:74283684-74283703 | MS.gene017178:intron | 30.0% | |
| TTGAAAATGGTGTAGTGAAA+AGG | + | chr5.3:74281919-74281938 | None:intergenic | 30.0% | |
| TTGATACTAATTGTGGACAT+AGG | - | chr5.3:74283084-74283103 | MS.gene017178:intron | 30.0% | |
| ! | CATTTTCAACTTTGATGTCA+TGG | - | chr5.3:74281930-74281949 | MS.gene017178:CDS | 30.0% |
| ! | CTCTTTTTCTTTCTGTCTAT+AGG | - | chr5.3:74282187-74282206 | MS.gene017178:intron | 30.0% |
| ! | GTGTCACTACTAGAAAAAAT+TGG | + | chr5.3:74283373-74283392 | None:intergenic | 30.0% |
| ! | TAAGAAGTGTAACCACATAT+GGG | + | chr5.3:74282391-74282410 | None:intergenic | 30.0% |
| AAATGGTGTAGTGAAAAGGT+TGG | + | chr5.3:74281915-74281934 | None:intergenic | 35.0% | |
| AATAGAAATCCCAACCCATT+TGG | + | chr5.3:74283702-74283721 | None:intergenic | 35.0% | |
| AGCATATATCCATCCTACTA+AGG | + | chr5.3:74282988-74283007 | None:intergenic | 35.0% | |
| AGTAGGATGGATATATGCTT+AGG | - | chr5.3:74282989-74283008 | MS.gene017178:intron | 35.0% | |
| ATACTAATTGTGGACATAGG+AGG | - | chr5.3:74283087-74283106 | MS.gene017178:intron | 35.0% | |
| GTTTCATTCAATCCCATATG+TGG | - | chr5.3:74282376-74282395 | MS.gene017178:intron | 35.0% | |
| TGAATTGCAGATATCCACTT+TGG | - | chr5.3:74283059-74283078 | MS.gene017178:intron | 35.0% | |
| TGCTGCTCCTTTAAGTATAA+TGG | - | chr5.3:74283209-74283228 | MS.gene017178:CDS | 35.0% | |
| TGTAAATGAATTGCAGAGGA+AGG | - | chr5.3:74283449-74283468 | MS.gene017178:intron | 35.0% | |
| TGTACATCATATATGCTCCT+AGG | - | chr5.3:74282513-74282532 | MS.gene017178:CDS | 35.0% | |
| TGTGTAAATCCTTAGTAGGA+TGG | - | chr5.3:74282976-74282995 | MS.gene017178:intron | 35.0% | |
| TTTCTATGGTCTCTTTGACA+AGG | - | chr5.3:74283548-74283567 | MS.gene017178:intron | 35.0% | |
| ! | CTAAGAAGTGTAACCACATA+TGG | + | chr5.3:74282392-74282411 | None:intergenic | 35.0% |
| !! | AATGGGTTGGGATTTCTATT+AGG | - | chr5.3:74283702-74283721 | MS.gene017178:intron | 35.0% |
| !! | GAAAAATGGCATTGGTCTTT+AGG | + | chr5.3:74282442-74282461 | None:intergenic | 35.0% |
| ACCATAGAAAAACCACATGG+TGG | + | chr5.3:74283538-74283557 | None:intergenic | 40.0% | |
| AGCAAGAGCAGATTAAAGTG+TGG | - | chr5.3:74283017-74283036 | MS.gene017178:intron | 40.0% | |
| ATCACCACCTTCATTGTGAA+AGG | - | chr5.3:74283129-74283148 | MS.gene017178:CDS | 40.0% | |
| GAAGGAACCTTTCACAATGA+AGG | + | chr5.3:74283139-74283158 | None:intergenic | 40.0% | |
| GAGAATGAAGAGACAAACGT+AGG | + | chr5.3:74282578-74282597 | None:intergenic | 40.0% | |
| GAGACCATAGAAAAACCACA+TGG | + | chr5.3:74283541-74283560 | None:intergenic | 40.0% | |
| GTTTGAACGTGCACTTACAA+TGG | + | chr5.3:74282241-74282260 | None:intergenic | 40.0% | |
| TTATTAGCTGCCAAATGGGT+TGG | - | chr5.3:74283689-74283708 | MS.gene017178:intron | 40.0% | |
| TTGATATACCTAGGAGACCA+AGG | + | chr5.3:74281861-74281880 | None:intergenic | 40.0% | |
| ! | ATGTTAGTGTCACTGTGTCA+GGG | - | chr5.3:74282933-74282952 | MS.gene017178:intron | 40.0% |
| ! | ATTGTGGACATAGGAGGTTT+TGG | - | chr5.3:74283093-74283112 | MS.gene017178:intron | 40.0% |
| ! | GTTTTTACCTTGAGCTTCCT+AGG | + | chr5.3:74282533-74282552 | None:intergenic | 40.0% |
| ! | TATTAGCTGCCAAATGGGTT+GGG | - | chr5.3:74283690-74283709 | MS.gene017178:intron | 40.0% |
| !! | TGTCCAACTGAGCTTTAAGT+CGG | + | chr5.3:74282844-74282863 | None:intergenic | 40.0% |
| AGCAATTGCATGCACTCTAG+AGG | + | chr5.3:74282774-74282793 | None:intergenic | 45.0% | |
| ATATGCTCCTAGGAAGCTCA+AGG | - | chr5.3:74282523-74282542 | MS.gene017178:CDS | 45.0% | |
| GGAACCTTTCACAATGAAGG+TGG | + | chr5.3:74283136-74283155 | None:intergenic | 45.0% | |
| TCAACCCCACAACTTGAACA+CGG | + | chr5.3:74283161-74283180 | None:intergenic | 45.0% | |
| ! | CATGTTAGTGTCACTGTGTC+AGG | - | chr5.3:74282932-74282951 | MS.gene017178:intron | 45.0% |
| ! | GCCACCATGTGGTTTTTCTA+TGG | - | chr5.3:74283534-74283553 | MS.gene017178:intron | 45.0% |
| !! | GTTTTGATCCTTGGTCTCCT+AGG | - | chr5.3:74281850-74281869 | MS.gene017178:CDS | 45.0% |
| !! | TCCTTCCGTGTTCAAGTTGT+GGG | - | chr5.3:74283153-74283172 | MS.gene017178:CDS | 45.0% |
| !! | TTCCTTCCGTGTTCAAGTTG+TGG | - | chr5.3:74283152-74283171 | MS.gene017178:CDS | 45.0% |
| !!! | ATAAAATTATGATATTTTAA+GGG | + | chr5.3:74283285-74283304 | None:intergenic | 5.0% |
| TAACACGACTCCGACACATG+TGG | - | chr5.3:74282865-74282884 | MS.gene017178:intron | 50.0% | |
| TTACTATCTGCGCCACCATG+TGG | - | chr5.3:74283523-74283542 | MS.gene017178:intron | 50.0% | |
| !! | CCTTCCGTGTTCAAGTTGTG+GGG | - | chr5.3:74283154-74283173 | MS.gene017178:CDS | 50.0% |
| !! | GCACCGACTTAAAGCTCAGT+TGG | - | chr5.3:74282838-74282857 | MS.gene017178:intron | 50.0% |
| CCCCACAACTTGAACACGGA+AGG | + | chr5.3:74283157-74283176 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 74281847 | 74283806 | 74281847 | ID=MS.gene017178 |
| chr5.3 | mRNA | 74281847 | 74283806 | 74281847 | ID=MS.gene017178.t1;Parent=MS.gene017178 |
| chr5.3 | exon | 74283782 | 74283806 | 74283782 | ID=MS.gene017178.t1.exon1;Parent=MS.gene017178.t1 |
| chr5.3 | CDS | 74283782 | 74283806 | 74283782 | ID=cds.MS.gene017178.t1;Parent=MS.gene017178.t1 |
| chr5.3 | exon | 74283411 | 74283444 | 74283411 | ID=MS.gene017178.t1.exon2;Parent=MS.gene017178.t1 |
| chr5.3 | CDS | 74283411 | 74283444 | 74283411 | ID=cds.MS.gene017178.t1;Parent=MS.gene017178.t1 |
| chr5.3 | exon | 74283109 | 74283319 | 74283109 | ID=MS.gene017178.t1.exon3;Parent=MS.gene017178.t1 |
| chr5.3 | CDS | 74283109 | 74283319 | 74283109 | ID=cds.MS.gene017178.t1;Parent=MS.gene017178.t1 |
| chr5.3 | exon | 74282423 | 74282584 | 74282423 | ID=MS.gene017178.t1.exon4;Parent=MS.gene017178.t1 |
| chr5.3 | CDS | 74282423 | 74282584 | 74282423 | ID=cds.MS.gene017178.t1;Parent=MS.gene017178.t1 |
| chr5.3 | exon | 74282069 | 74282188 | 74282069 | ID=MS.gene017178.t1.exon5;Parent=MS.gene017178.t1 |
| chr5.3 | CDS | 74282069 | 74282188 | 74282069 | ID=cds.MS.gene017178.t1;Parent=MS.gene017178.t1 |
| chr5.3 | exon | 74281847 | 74281957 | 74281847 | ID=MS.gene017178.t1.exon6;Parent=MS.gene017178.t1 |
| chr5.3 | CDS | 74281847 | 74281957 | 74281847 | ID=cds.MS.gene017178.t1;Parent=MS.gene017178.t1 |
| Gene Sequence |
| Protein sequence |
