Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94431.t1 | XP_013447478.1 | 97.6 | 254 | 5 | 1 | 1 | 254 | 1 | 253 | 6.90E-127 | 463.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94431.t1 | Q9FPN0 | 64.8 | 210 | 73 | 1 | 8 | 217 | 8 | 216 | 4.3e-69 | 262.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94431.t1 | A0A072TVM1 | 97.6 | 254 | 5 | 1 | 1 | 254 | 1 | 253 | 4.9e-127 | 463.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene94431 | MS.gene79463 | PPI |
| MS.gene030474 | MS.gene94431 | PPI |
| MS.gene94431 | MS.gene70529 | PPI |
| MS.gene55828 | MS.gene94431 | PPI |
| MS.gene94431 | MS.gene46188 | PPI |
| MS.gene94431 | MS.gene048962 | PPI |
| MS.gene94431 | MS.gene25769 | PPI |
| MS.gene044269 | MS.gene94431 | PPI |
| MS.gene000529 | MS.gene94431 | PPI |
| MS.gene063278 | MS.gene94431 | PPI |
| MS.gene90281 | MS.gene94431 | PPI |
| MS.gene69746 | MS.gene94431 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94431.t1 | MTR_7g007490 | 97.638 | 254 | 5 | 1 | 1 | 254 | 1 | 253 | 0.0 | 498 |
| MS.gene94431.t1 | MTR_5g092600 | 78.431 | 255 | 51 | 3 | 1 | 254 | 1 | 252 | 9.30e-142 | 397 |
| MS.gene94431.t1 | MTR_8g096320 | 52.814 | 231 | 108 | 1 | 3 | 232 | 2 | 232 | 6.73e-85 | 254 |
| MS.gene94431.t1 | MTR_5g067530 | 54.717 | 212 | 95 | 1 | 6 | 216 | 5 | 216 | 6.93e-77 | 234 |
| MS.gene94431.t1 | MTR_7g405730 | 46.693 | 257 | 118 | 1 | 3 | 240 | 2 | 258 | 2.72e-75 | 229 |
| MS.gene94431.t1 | MTR_3g098910 | 47.826 | 253 | 125 | 4 | 1 | 252 | 1 | 247 | 4.90e-75 | 231 |
| MS.gene94431.t1 | MTR_7g405710 | 53.394 | 221 | 103 | 0 | 3 | 223 | 2 | 222 | 1.04e-74 | 229 |
| MS.gene94431.t1 | MTR_2g007890 | 46.923 | 260 | 122 | 4 | 1 | 253 | 3 | 253 | 2.04e-72 | 223 |
| MS.gene94431.t1 | MTR_8g096310 | 46.694 | 242 | 123 | 4 | 6 | 246 | 5 | 241 | 8.01e-71 | 219 |
| MS.gene94431.t1 | MTR_3g098930 | 50.505 | 198 | 95 | 3 | 4 | 199 | 4 | 200 | 5.74e-60 | 188 |
| MS.gene94431.t1 | MTR_8g096320 | 50.847 | 177 | 86 | 1 | 57 | 232 | 1 | 177 | 1.91e-57 | 182 |
| MS.gene94431.t1 | MTR_1g029380 | 41.593 | 226 | 124 | 4 | 12 | 232 | 7 | 229 | 1.70e-51 | 168 |
| MS.gene94431.t1 | MTR_3g089125 | 37.553 | 237 | 143 | 3 | 7 | 240 | 2 | 236 | 3.78e-51 | 167 |
| MS.gene94431.t1 | MTR_2g436310 | 37.557 | 221 | 135 | 1 | 14 | 231 | 9 | 229 | 5.82e-50 | 164 |
| MS.gene94431.t1 | MTR_8g099730 | 34.413 | 247 | 155 | 3 | 1 | 240 | 9 | 255 | 1.08e-44 | 151 |
| MS.gene94431.t1 | MTR_6g007633 | 37.500 | 240 | 132 | 6 | 12 | 247 | 10 | 235 | 1.80e-42 | 145 |
| MS.gene94431.t1 | MTR_3g080990 | 35.391 | 243 | 147 | 2 | 14 | 254 | 12 | 246 | 2.50e-42 | 145 |
| MS.gene94431.t1 | MTR_6g007623 | 37.327 | 217 | 132 | 3 | 12 | 224 | 7 | 223 | 1.22e-41 | 142 |
| MS.gene94431.t1 | MTR_6g007637 | 37.321 | 209 | 128 | 2 | 12 | 217 | 11 | 219 | 2.80e-40 | 139 |
| MS.gene94431.t1 | MTR_8g042490 | 36.620 | 213 | 128 | 3 | 14 | 222 | 18 | 227 | 7.35e-39 | 135 |
| MS.gene94431.t1 | MTR_1g028460 | 31.818 | 242 | 148 | 2 | 11 | 248 | 7 | 235 | 4.56e-36 | 129 |
| MS.gene94431.t1 | MTR_2g073190 | 34.123 | 211 | 136 | 2 | 14 | 222 | 18 | 227 | 2.82e-34 | 130 |
| MS.gene94431.t1 | MTR_3g090950 | 29.958 | 237 | 160 | 2 | 6 | 238 | 2 | 236 | 9.84e-33 | 120 |
| MS.gene94431.t1 | MTR_4g106990 | 37.097 | 186 | 115 | 1 | 30 | 213 | 35 | 220 | 2.35e-32 | 119 |
| MS.gene94431.t1 | MTR_3g090940 | 29.804 | 255 | 152 | 4 | 6 | 248 | 2 | 241 | 6.63e-32 | 117 |
| MS.gene94431.t1 | MTR_8g099730 | 34.270 | 178 | 112 | 2 | 68 | 240 | 14 | 191 | 7.67e-29 | 108 |
| MS.gene94431.t1 | MTR_6g007610 | 29.114 | 237 | 141 | 7 | 12 | 229 | 10 | 238 | 1.80e-24 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94431.t1 | AT2G39060 | 57.959 | 245 | 97 | 3 | 7 | 251 | 6 | 244 | 6.20e-89 | 264 |
| MS.gene94431.t1 | AT5G50790 | 51.915 | 235 | 110 | 2 | 3 | 234 | 2 | 236 | 7.89e-82 | 247 |
| MS.gene94431.t1 | AT5G13170 | 49.558 | 226 | 113 | 1 | 5 | 229 | 6 | 231 | 2.34e-78 | 238 |
| MS.gene94431.t1 | AT3G48740 | 50.901 | 222 | 109 | 0 | 5 | 226 | 6 | 227 | 4.16e-76 | 233 |
| MS.gene94431.t1 | AT5G50800 | 50.213 | 235 | 114 | 2 | 3 | 234 | 2 | 236 | 7.60e-75 | 229 |
| MS.gene94431.t1 | AT5G23660 | 48.472 | 229 | 117 | 1 | 4 | 231 | 4 | 232 | 3.43e-73 | 225 |
| MS.gene94431.t1 | AT4G25010 | 51.802 | 222 | 106 | 1 | 9 | 229 | 8 | 229 | 3.10e-71 | 220 |
| MS.gene94431.t1 | AT1G21460 | 40.486 | 247 | 134 | 5 | 12 | 253 | 7 | 245 | 3.09e-53 | 172 |
| MS.gene94431.t1 | AT4G15920 | 38.197 | 233 | 120 | 5 | 14 | 232 | 9 | 231 | 2.45e-50 | 165 |
| MS.gene94431.t1 | AT3G16690 | 35.238 | 210 | 133 | 2 | 14 | 221 | 9 | 217 | 7.11e-44 | 148 |
| MS.gene94431.t1 | AT3G16690 | 35.238 | 210 | 133 | 2 | 14 | 221 | 44 | 252 | 1.10e-43 | 149 |
| MS.gene94431.t1 | AT4G10850 | 34.703 | 219 | 140 | 2 | 12 | 227 | 12 | 230 | 1.40e-43 | 148 |
| MS.gene94431.t1 | AT5G53190 | 35.458 | 251 | 153 | 5 | 8 | 252 | 4 | 251 | 1.04e-42 | 146 |
| MS.gene94431.t1 | AT5G62850 | 33.333 | 228 | 144 | 4 | 7 | 229 | 5 | 229 | 1.56e-41 | 142 |
| MS.gene94431.t1 | AT1G21460 | 41.146 | 192 | 110 | 2 | 12 | 201 | 7 | 197 | 3.20e-41 | 140 |
| MS.gene94431.t1 | AT5G40260 | 37.238 | 239 | 125 | 6 | 8 | 227 | 6 | 238 | 4.00e-40 | 139 |
| MS.gene94431.t1 | AT1G66770 | 38.813 | 219 | 120 | 5 | 12 | 221 | 12 | 225 | 2.15e-39 | 137 |
| MS.gene94431.t1 | AT3G14770 | 33.333 | 222 | 129 | 4 | 14 | 226 | 18 | 229 | 5.91e-36 | 128 |
| MS.gene94431.t1 | AT5G40260 | 38.579 | 197 | 105 | 4 | 8 | 194 | 6 | 196 | 8.41e-34 | 121 |
| MS.gene94431.t1 | AT3G28007 | 38.498 | 213 | 123 | 4 | 12 | 219 | 10 | 219 | 1.83e-33 | 122 |
| MS.gene94431.t1 | AT5G62850 | 33.333 | 195 | 122 | 4 | 5 | 194 | 3 | 194 | 1.83e-32 | 118 |
| MS.gene94431.t1 | AT3G16690 | 31.492 | 181 | 107 | 4 | 14 | 192 | 9 | 174 | 1.51e-21 | 89.4 |
Find 45 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACGTACCTTAAGCTTTC+TGG | 0.138382 | 7.1:+86813945 | None:intergenic |
| GCATTGTTATTGCTATATTA+TGG | 0.220036 | 7.1:-86814063 | MS.gene94431:CDS |
| GAAAGTACCATTATGCTTAA+AGG | 0.226693 | 7.1:+86813195 | None:intergenic |
| TATCAGCTACCAAATGTGTT+AGG | 0.276385 | 7.1:-86812171 | MS.gene94431:intron |
| TGCTGCTCCTTTAAGCATAA+TGG | 0.278814 | 7.1:-86813202 | MS.gene94431:intron |
| TGACAAGGATAATTACATTA+TGG | 0.279673 | 7.1:-86812300 | MS.gene94431:intron |
| TTTCTTGTAAATTGAATAGA+AGG | 0.294119 | 7.1:+86814137 | None:intergenic |
| TCCTTTCGTGTTCATGCTGT+TGG | 0.318048 | 7.1:-86813258 | MS.gene94431:CDS |
| AGGAACAATGATAAAGAAAA+TGG | 0.318887 | 7.1:+86812362 | None:intergenic |
| ATTGATTGTGATAATCAAAA+TGG | 0.322958 | 7.1:+86814023 | None:intergenic |
| TCAAAATGGCATTGGTCTTA+AGG | 0.334310 | 7.1:+86814037 | None:intergenic |
| ATTATCACAATCAATTGTAT+TGG | 0.347338 | 7.1:-86814015 | MS.gene94431:CDS |
| GTTGCTGACCTAGGAGGTCT+TGG | 0.368055 | 7.1:-86813318 | MS.gene94431:CDS |
| CATATATGATGTACATGATT+AGG | 0.387583 | 7.1:+86813971 | None:intergenic |
| TCTTAGCATTCTTGTATATG+AGG | 0.388872 | 7.1:+86812115 | None:intergenic |
| TTACGTACCTTAAGCTTTCT+GGG | 0.402611 | 7.1:+86813946 | None:intergenic |
| CTAAGAAGTGCAACTACATA+TGG | 0.405787 | 7.1:+86814087 | None:intergenic |
| AGGTAACATTGTCTCATTCA+TGG | 0.424995 | 7.1:-86814289 | MS.gene94431:CDS |
| CCTTTCGTGTTCATGCTGTT+GGG | 0.431442 | 7.1:-86813257 | MS.gene94431:CDS |
| AACAGAAACCCTAACACATT+TGG | 0.433431 | 7.1:+86812162 | None:intergenic |
| ATATGCTCCCAGAAAGCTTA+AGG | 0.441764 | 7.1:-86813953 | MS.gene94431:intron |
| ATCAGCTACCAAATGTGTTA+GGG | 0.455453 | 7.1:-86812170 | MS.gene94431:intron |
| AACCATCTCGTGATCAGAAA+AGG | 0.467285 | 7.1:+86814975 | None:intergenic |
| TTTATACTTGTTGCTGACCT+AGG | 0.468356 | 7.1:-86813327 | MS.gene94431:CDS |
| CATGATAATCACCTTCTTTG+TGG | 0.472006 | 7.1:-86813289 | MS.gene94431:CDS |
| CAAGAACATGGTTGTGATGA+TGG | 0.481586 | 7.1:-86812060 | MS.gene94431:CDS |
| ACATGGTGGCACAGAGAGTA+AGG | 0.483061 | 7.1:+86812342 | None:intergenic |
| TGAATTGCAGATATCCACTT+TGG | 0.495123 | 7.1:-86813352 | MS.gene94431:intron |
| ATTTCAACCACCACTACTGA+AGG | 0.512650 | 7.1:+86812021 | None:intergenic |
| AATGTGTTAGGGTTTCTGTT+TGG | 0.517325 | 7.1:-86812159 | MS.gene94431:CDS |
| TTGTAAATTGAATAGAAGGT+TGG | 0.536740 | 7.1:+86814141 | None:intergenic |
| TGGTCAAGCCAAGACCTCCT+AGG | 0.539989 | 7.1:+86813310 | None:intergenic |
| CACAAAGAAGGTGATTATCA+TGG | 0.546705 | 7.1:+86813290 | None:intergenic |
| GGAGGACTTCACCACAAAGA+AGG | 0.572054 | 7.1:+86813278 | None:intergenic |
| TGTGATAATCAAAATGGCAT+TGG | 0.577404 | 7.1:+86814029 | None:intergenic |
| TTTCTATGGTCTCTTTGACA+AGG | 0.585997 | 7.1:-86812315 | MS.gene94431:CDS |
| TTACTCTCTGTGCCACCATG+TGG | 0.592006 | 7.1:-86812340 | MS.gene94431:CDS |
| AGAGGACTTACAATGGTGCT+AGG | 0.596356 | 7.1:+86814262 | None:intergenic |
| ATACTTGTTGCTGACCTAGG+AGG | 0.597667 | 7.1:-86813324 | MS.gene94431:CDS |
| AGAGTTCCCTTCAGTAGTGG+TGG | 0.599805 | 7.1:-86812028 | MS.gene94431:CDS |
| ACTGAGCAGCAGCAAGAACA+TGG | 0.605926 | 7.1:-86812072 | MS.gene94431:CDS |
| CCCAACAGCATGAACACGAA+AGG | 0.607543 | 7.1:+86813257 | None:intergenic |
| AACAGCATGAACACGAAAGG+AGG | 0.617910 | 7.1:+86813260 | None:intergenic |
| ACAAGAGTTCCCTTCAGTAG+TGG | 0.628149 | 7.1:-86812031 | MS.gene94431:CDS |
| TTTCAACCACCACTACTGAA+GGG | 0.651912 | 7.1:+86812022 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTACATATGTTAAAAT+TGG | + | chr7.1:86813181-86813200 | None:intergenic | 10.0% |
| !!! | ATGAATATTACTATTTTTTT+TGG | - | chr7.1:86812781-86812800 | MS.gene94431:intron | 10.0% |
| !!! | TGAATATTACTATTTTTTTT+GGG | - | chr7.1:86812782-86812801 | MS.gene94431:intron | 10.0% |
| !! | AAAGACAAAAAAAATGAAAT+TGG | - | chr7.1:86814332-86814351 | MS.gene94431:intron | 15.0% |
| !! | AATTAAGTATATAAGATGAA+TGG | + | chr7.1:86813826-86813845 | None:intergenic | 15.0% |
| !! | ACACATCAATAAAAAAAAAT+TGG | + | chr7.1:86814513-86814532 | None:intergenic | 15.0% |
| !! | ATATTAATTATGGAAAAATG+AGG | - | chr7.1:86812177-86812196 | MS.gene94431:intron | 15.0% |
| !! | ATTCACTAAAAATAAAAGAA+AGG | + | chr7.1:86812559-86812578 | None:intergenic | 15.0% |
| !! | CACATCAATAAAAAAAAATT+GGG | + | chr7.1:86814512-86814531 | None:intergenic | 15.0% |
| !! | CGAAAGAAAAATTAATTAAT+AGG | + | chr7.1:86814739-86814758 | None:intergenic | 15.0% |
| !! | TAATAAATCCAAAGAAAAAA+AGG | + | chr7.1:86813546-86813565 | None:intergenic | 15.0% |
| !!! | AAATAAAGATTTTGTGATTA+TGG | + | chr7.1:86813066-86813085 | None:intergenic | 15.0% |
| !!! | TAATTTAACTTTTTCTTGTA+GGG | - | chr7.1:86814434-86814453 | MS.gene94431:intron | 15.0% |
| !!! | TACTTTCTAATATTTTTCAA+GGG | - | chr7.1:86813979-86813998 | MS.gene94431:CDS | 15.0% |
| !!! | TATTTTTAGTGAATACATTA+AGG | - | chr7.1:86812565-86812584 | MS.gene94431:intron | 15.0% |
| !!! | TTCTATTTTTTCATTCTAAT+CGG | - | chr7.1:86812293-86812312 | MS.gene94431:intron | 15.0% |
| !!! | TTTATATACCTTTTTTTCTT+TGG | - | chr7.1:86813535-86813554 | MS.gene94431:intron | 15.0% |
| !! | AAAAGTGAAAACAAATCAAA+TGG | - | chr7.1:86813901-86813920 | MS.gene94431:intron | 20.0% |
| !! | AAAGACAAAAAACATGAATT+TGG | + | chr7.1:86814401-86814420 | None:intergenic | 20.0% |
| !! | ATCTTGGTATTACATATATT+AGG | + | chr7.1:86813363-86813382 | None:intergenic | 20.0% |
| !! | ATTATCACAATCAATTGTAT+TGG | - | chr7.1:86812969-86812988 | MS.gene94431:intron | 20.0% |
| !! | ATTGATTGTGATAATCAAAA+TGG | + | chr7.1:86812964-86812983 | None:intergenic | 20.0% |
| !! | GATTATATATATATAACGTG+TGG | - | chr7.1:86813590-86813609 | MS.gene94431:intron | 20.0% |
| !! | TATAACATCAAAGTTGAAAA+TGG | + | chr7.1:86812111-86812130 | None:intergenic | 20.0% |
| !! | TTACTTAATTTATTTGAGAG+AGG | + | chr7.1:86812743-86812762 | None:intergenic | 20.0% |
| !! | TTTCTTATAATGAATGTAGA+GGG | + | chr7.1:86813104-86813123 | None:intergenic | 20.0% |
| !! | TTTCTTGTAAATTGAATAGA+AGG | + | chr7.1:86812850-86812869 | None:intergenic | 20.0% |
| !!! | ACTAATCCAATTTTGTTTAA+TGG | - | chr7.1:86814483-86814502 | MS.gene94431:intron | 20.0% |
| !!! | CTAATTTAACTTTTTCTTGT+AGG | - | chr7.1:86814433-86814452 | MS.gene94431:intron | 20.0% |
| !!! | GTACTTTCTAATATTTTTCA+AGG | - | chr7.1:86813978-86813997 | MS.gene94431:CDS | 20.0% |
| !!! | TGTTTTTTGTCTTTAATTAC+TGG | - | chr7.1:86814407-86814426 | MS.gene94431:intron | 20.0% |
| !!! | TTTTCTTATAATGAATGTAG+AGG | + | chr7.1:86813105-86813124 | None:intergenic | 20.0% |
| ! | AAAGACTGCAATGTTAAAAA+TGG | + | chr7.1:86813763-86813782 | None:intergenic | 25.0% |
| ! | AACAAGTATAAAAACCAAAG+TGG | + | chr7.1:86813649-86813668 | None:intergenic | 25.0% |
| ! | AAGAAAGATTAACACAAACA+TGG | + | chr7.1:86813511-86813530 | None:intergenic | 25.0% |
| ! | ACAAGAAAAAATCATCTGAA+GGG | - | chr7.1:86812862-86812881 | MS.gene94431:intron | 25.0% |
| ! | ACACTTTCAATATGAAATCT+TGG | + | chr7.1:86813379-86813398 | None:intergenic | 25.0% |
| ! | AGGAACAATGATAAAGAAAA+TGG | + | chr7.1:86814625-86814644 | None:intergenic | 25.0% |
| ! | CATATATGATGTACATGATT+AGG | + | chr7.1:86813016-86813035 | None:intergenic | 25.0% |
| ! | CTCAGTTAAAACAAATCAAA+TGG | - | chr7.1:86813864-86813883 | MS.gene94431:intron | 25.0% |
| ! | GTTAAGAATATGTTCAGAAT+AGG | + | chr7.1:86814070-86814089 | None:intergenic | 25.0% |
| ! | TACAAGAAAAAATCATCTGA+AGG | - | chr7.1:86812861-86812880 | MS.gene94431:intron | 25.0% |
| ! | TAGAGCTCACATATTAATTA+TGG | - | chr7.1:86812167-86812186 | MS.gene94431:CDS | 25.0% |
| ! | TAGTGCATGTAAAATTAAGA+TGG | + | chr7.1:86814282-86814301 | None:intergenic | 25.0% |
| ! | TCAACACTTTACAACTAAAT+TGG | - | chr7.1:86814373-86814392 | MS.gene94431:intron | 25.0% |
| ! | TGACAAGGATAATTACATTA+TGG | - | chr7.1:86814684-86814703 | MS.gene94431:intron | 25.0% |
| ! | TTGTAAATTGAATAGAAGGT+TGG | + | chr7.1:86812846-86812865 | None:intergenic | 25.0% |
| !! | ATCAACTACAACTTGTATTT+TGG | - | chr7.1:86814212-86814231 | MS.gene94431:intron | 25.0% |
| !! | GCATTGTTATTGCTATATTA+TGG | - | chr7.1:86812921-86812940 | MS.gene94431:intron | 25.0% |
| !!! | CATTTGATTTGTTTTAACTG+AGG | + | chr7.1:86813866-86813885 | None:intergenic | 25.0% |
| AAACATAAAGAATGAGAACC+AGG | + | chr7.1:86812661-86812680 | None:intergenic | 30.0% | |
| AATTTGTACATGAATTGCAG+AGG | - | chr7.1:86814566-86814585 | MS.gene94431:intron | 30.0% | |
| ACAAGAAAAAACACTCCTAA+GGG | + | chr7.1:86813297-86813316 | None:intergenic | 30.0% | |
| AGAAAAGATTGGAGTAAGAA+TGG | + | chr7.1:86812078-86812097 | None:intergenic | 30.0% | |
| ATGTTACCTAGACACAAAAA+AGG | + | chr7.1:86812684-86812703 | None:intergenic | 30.0% | |
| CTATAATCGCAAATTAGAGA+CGG | + | chr7.1:86813217-86813236 | None:intergenic | 30.0% | |
| GAAAAGATTGGAGTAAGAAT+GGG | + | chr7.1:86812077-86812096 | None:intergenic | 30.0% | |
| GTAGTTTATAACACTCCTAA+GGG | + | chr7.1:86813330-86813349 | None:intergenic | 30.0% | |
| TCTTAGCATTCTTGTATATG+AGG | + | chr7.1:86814872-86814891 | None:intergenic | 30.0% | |
| TGTAGTTTATAACACTCCTA+AGG | + | chr7.1:86813331-86813350 | None:intergenic | 30.0% | |
| TGTGATAATCAAAATGGCAT+TGG | + | chr7.1:86812958-86812977 | None:intergenic | 30.0% | |
| !! | CAAAATTGGATTAGTCATGA+AGG | + | chr7.1:86814478-86814497 | None:intergenic | 30.0% |
| !! | GAAAGTACCATTATGCTTAA+AGG | + | chr7.1:86813792-86813811 | None:intergenic | 30.0% |
| !! | TTTGTTATTCTATCTCTTGC+AGG | - | chr7.1:86812820-86812839 | MS.gene94431:intron | 30.0% |
| !!! | ACAACTTGTATTTTGGAACA+TGG | - | chr7.1:86814219-86814238 | MS.gene94431:intron | 30.0% |
| !!! | ATGTTTCCTTTTTTGTGTCT+AGG | - | chr7.1:86812675-86812694 | MS.gene94431:intron | 30.0% |
| !!! | GTTTTAACTGAGGTGAATTT+GGG | + | chr7.1:86813856-86813875 | None:intergenic | 30.0% |
| !!! | TGTTTTAACTGAGGTGAATT+TGG | + | chr7.1:86813857-86813876 | None:intergenic | 30.0% |
| !!! | TTTTTTCGTCAAGTAGATAG+AGG | - | chr7.1:86812143-86812162 | MS.gene94431:CDS | 30.0% |
| AACAGAAACCCTAACACATT+TGG | + | chr7.1:86814825-86814844 | None:intergenic | 35.0% | |
| AATGTGTTAGGGTTTCTGTT+TGG | - | chr7.1:86814825-86814844 | MS.gene94431:intron | 35.0% | |
| AGGTAACATTGTCTCATTCA+TGG | - | chr7.1:86812695-86812714 | MS.gene94431:intron | 35.0% | |
| ATCAGCTACCAAATGTGTTA+GGG | - | chr7.1:86814814-86814833 | MS.gene94431:intron | 35.0% | |
| ATCGTACTAACTCATGTTCT+AGG | + | chr7.1:86813573-86813592 | None:intergenic | 35.0% | |
| ATTACGTACCTTAAGCTTTC+TGG | + | chr7.1:86813042-86813061 | None:intergenic | 35.0% | |
| ATTTGAGAGAGGACTTACAA+TGG | + | chr7.1:86812732-86812751 | None:intergenic | 35.0% | |
| CACAAAGAAGGTGATTATCA+TGG | + | chr7.1:86813697-86813716 | None:intergenic | 35.0% | |
| CACAAGAAAAAACACTCCTA+AGG | + | chr7.1:86813298-86813317 | None:intergenic | 35.0% | |
| CATGATAATCACCTTCTTTG+TGG | - | chr7.1:86813695-86813714 | MS.gene94431:intron | 35.0% | |
| CGACATGTATTTAGAAACGA+AGG | + | chr7.1:86814018-86814037 | None:intergenic | 35.0% | |
| GGGTCACCATTAAACAAAAT+TGG | + | chr7.1:86814492-86814511 | None:intergenic | 35.0% | |
| GTGCAGTGAAAAGAAAAGAT+TGG | + | chr7.1:86812089-86812108 | None:intergenic | 35.0% | |
| TATCAGCTACCAAATGTGTT+AGG | - | chr7.1:86814813-86814832 | MS.gene94431:intron | 35.0% | |
| TGAATTGCAGATATCCACTT+TGG | - | chr7.1:86813632-86813651 | MS.gene94431:intron | 35.0% | |
| TTACGTACCTTAAGCTTTCT+GGG | + | chr7.1:86813041-86813060 | None:intergenic | 35.0% | |
| TTTCTATGGTCTCTTTGACA+AGG | - | chr7.1:86814669-86814688 | MS.gene94431:intron | 35.0% | |
| ! | CTAAGAAGTGCAACTACATA+TGG | + | chr7.1:86812900-86812919 | None:intergenic | 35.0% |
| ! | TTTATACTTGTTGCTGACCT+AGG | - | chr7.1:86813657-86813676 | MS.gene94431:intron | 35.0% |
| !! | ACAATGAGAAGTGGTTCTAA+GGG | + | chr7.1:86814252-86814271 | None:intergenic | 35.0% |
| !! | GTTTTGATCTTTGGTCTTCT+AGG | - | chr7.1:86812029-86812048 | MS.gene94431:CDS | 35.0% |
| !! | TCAAAATGGCATTGGTCTTA+AGG | + | chr7.1:86812950-86812969 | None:intergenic | 35.0% |
| AACCATCTCGTGATCAGAAA+AGG | + | chr7.1:86812012-86812031 | None:intergenic | 40.0% | |
| ACCATAGAAAAACCACATGG+TGG | + | chr7.1:86814659-86814678 | None:intergenic | 40.0% | |
| ATATGCTCCCAGAAAGCTTA+AGG | - | chr7.1:86813031-86813050 | MS.gene94431:intron | 40.0% | |
| ATGAGAACCAGGATCATAGT+AGG | + | chr7.1:86812650-86812669 | None:intergenic | 40.0% | |
| ATTTCAACCACCACTACTGA+AGG | + | chr7.1:86814966-86814985 | None:intergenic | 40.0% | |
| CAAGAACATGGTTGTGATGA+TGG | - | chr7.1:86814924-86814943 | MS.gene94431:intron | 40.0% | |
| CTTAGAACCACTTCTCATTG+TGG | - | chr7.1:86814251-86814270 | MS.gene94431:intron | 40.0% | |
| CTTGTGAAAGAGTTACCCTT+AGG | - | chr7.1:86813312-86813331 | MS.gene94431:CDS | 40.0% | |
| GAGACCATAGAAAAACCACA+TGG | + | chr7.1:86814662-86814681 | None:intergenic | 40.0% | |
| TAGTAGGGAAAACTGAAAGC+TGG | + | chr7.1:86812634-86812653 | None:intergenic | 40.0% | |
| TGAGAACCAGGATCATAGTA+GGG | + | chr7.1:86812649-86812668 | None:intergenic | 40.0% | |
| TGCTGCTCCTTTAAGCATAA+TGG | - | chr7.1:86813782-86813801 | MS.gene94431:intron | 40.0% | |
| TGTACATGAATTGCAGAGGA+AGG | - | chr7.1:86814570-86814589 | MS.gene94431:intron | 40.0% | |
| TTTCAACCACCACTACTGAA+GGG | + | chr7.1:86814965-86814984 | None:intergenic | 40.0% | |
| ! | AGTTTTCCCTACTATGATCC+TGG | - | chr7.1:86812640-86812659 | MS.gene94431:intron | 40.0% |
| ! | CACAATGAGAAGTGGTTCTA+AGG | + | chr7.1:86814253-86814272 | None:intergenic | 40.0% |
| ! | TTCCTTTTCTGATCACGAGA+TGG | - | chr7.1:86812007-86812026 | MS.gene94431:CDS | 40.0% |
| !!! | CACGAGATGGTTTTGATCTT+TGG | - | chr7.1:86812020-86812039 | MS.gene94431:CDS | 40.0% |
| AACAGCATGAACACGAAAGG+AGG | + | chr7.1:86813727-86813746 | None:intergenic | 45.0% | |
| ACAAGAGTTCCCTTCAGTAG+TGG | - | chr7.1:86814953-86814972 | MS.gene94431:intron | 45.0% | |
| AGAGGACTTACAATGGTGCT+AGG | + | chr7.1:86812725-86812744 | None:intergenic | 45.0% | |
| CACTTACATCAGTGTCGTGT+CGG | + | chr7.1:86813415-86813434 | None:intergenic | 45.0% | |
| CCTTTCGTGTTCATGCTGTT+GGG | - | chr7.1:86813727-86813746 | MS.gene94431:intron | 45.0% | |
| GGATTCTCCACAATGAGAAG+TGG | + | chr7.1:86814261-86814280 | None:intergenic | 45.0% | |
| TCCTTTCGTGTTCATGCTGT+TGG | - | chr7.1:86813726-86813745 | MS.gene94431:intron | 45.0% | |
| ! | ATACTTGTTGCTGACCTAGG+AGG | - | chr7.1:86813660-86813679 | MS.gene94431:intron | 45.0% |
| ! | GCCACCATGTGGTTTTTCTA+TGG | - | chr7.1:86814655-86814674 | MS.gene94431:intron | 45.0% |
| ACATGGTGGCACAGAGAGTA+AGG | + | chr7.1:86814645-86814664 | None:intergenic | 50.0% | |
| ACTGAGCAGCAGCAAGAACA+TGG | - | chr7.1:86814912-86814931 | MS.gene94431:intron | 50.0% | |
| AGAGTTCCCTTCAGTAGTGG+TGG | - | chr7.1:86814956-86814975 | MS.gene94431:CDS | 50.0% | |
| ATCCCCTTGAGCTTAGCTCA+GGG | + | chr7.1:86812225-86812244 | None:intergenic | 50.0% | |
| CCCAACAGCATGAACACGAA+AGG | + | chr7.1:86813730-86813749 | None:intergenic | 50.0% | |
| CGACACGACACTGATGTAAG+TGG | - | chr7.1:86813413-86813432 | MS.gene94431:intron | 50.0% | |
| GAGTGCACGTGATTACCCTT+AGG | - | chr7.1:86813279-86813298 | MS.gene94431:CDS | 50.0% | |
| GGAGGACTTCACCACAAAGA+AGG | + | chr7.1:86813709-86813728 | None:intergenic | 50.0% | |
| GGTAATCACGTGCACTCTAG+AGG | + | chr7.1:86813276-86813295 | None:intergenic | 50.0% | |
| TTACTCTCTGTGCCACCATG+TGG | - | chr7.1:86814644-86814663 | MS.gene94431:intron | 50.0% | |
| AGCCCCTGAGCTAAGCTCAA+GGG | - | chr7.1:86812219-86812238 | MS.gene94431:intron | 55.0% | |
| GATCCCCTTGAGCTTAGCTC+AGG | + | chr7.1:86812226-86812245 | None:intergenic | 55.0% | |
| GTTGCTGACCTAGGAGGTCT+TGG | - | chr7.1:86813666-86813685 | MS.gene94431:intron | 55.0% | |
| TCCCCTTGAGCTTAGCTCAG+GGG | + | chr7.1:86812224-86812243 | None:intergenic | 55.0% | |
| TGGTCAAGCCAAGACCTCCT+AGG | + | chr7.1:86813677-86813696 | None:intergenic | 55.0% | |
| AGGGGCTGGAGTTCGAACTC+TGG | + | chr7.1:86812206-86812225 | None:intergenic | 60.0% | |
| CAGCCCCTGAGCTAAGCTCA+AGG | - | chr7.1:86812218-86812237 | MS.gene94431:intron | 60.0% | |
| CTTGAGCTTAGCTCAGGGGC+TGG | + | chr7.1:86812220-86812239 | None:intergenic | 60.0% | |
| GCCCCTGAGCTAAGCTCAAG+GGG | - | chr7.1:86812220-86812239 | MS.gene94431:intron | 60.0% | |
| !! | GTGTCGTGTCGGTGTCGAGT+TGG | + | chr7.1:86813404-86813423 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 86812002 | 86815004 | 86812002 | ID=MS.gene94431 |
| chr7.1 | mRNA | 86812002 | 86815004 | 86812002 | ID=MS.gene94431.t1;Parent=MS.gene94431 |
| chr7.1 | exon | 86814956 | 86815004 | 86814956 | ID=MS.gene94431.t1.exon1;Parent=MS.gene94431.t1 |
| chr7.1 | CDS | 86814956 | 86815004 | 86814956 | ID=cds.MS.gene94431.t1;Parent=MS.gene94431.t1 |
| chr7.1 | exon | 86814273 | 86814309 | 86814273 | ID=MS.gene94431.t1.exon2;Parent=MS.gene94431.t1 |
| chr7.1 | CDS | 86814273 | 86814309 | 86814273 | ID=cds.MS.gene94431.t1;Parent=MS.gene94431.t1 |
| chr7.1 | exon | 86813954 | 86814164 | 86813954 | ID=MS.gene94431.t1.exon3;Parent=MS.gene94431.t1 |
| chr7.1 | CDS | 86813954 | 86814164 | 86813954 | ID=cds.MS.gene94431.t1;Parent=MS.gene94431.t1 |
| chr7.1 | exon | 86813203 | 86813364 | 86813203 | ID=MS.gene94431.t1.exon4;Parent=MS.gene94431.t1 |
| chr7.1 | CDS | 86813203 | 86813364 | 86813203 | ID=cds.MS.gene94431.t1;Parent=MS.gene94431.t1 |
| chr7.1 | exon | 86812301 | 86812420 | 86812301 | ID=MS.gene94431.t1.exon5;Parent=MS.gene94431.t1 |
| chr7.1 | CDS | 86812301 | 86812420 | 86812301 | ID=cds.MS.gene94431.t1;Parent=MS.gene94431.t1 |
| chr7.1 | exon | 86812002 | 86812187 | 86812002 | ID=MS.gene94431.t1.exon6;Parent=MS.gene94431.t1 |
| chr7.1 | CDS | 86812002 | 86812187 | 86812002 | ID=cds.MS.gene94431.t1;Parent=MS.gene94431.t1 |
| Gene Sequence |
| Protein sequence |
