Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76933.t1 | XP_013447478.1 | 97.6 | 254 | 5 | 1 | 1 | 254 | 1 | 253 | 5.20E-127 | 463.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76933.t1 | Q9FPN0 | 64.8 | 210 | 73 | 1 | 8 | 217 | 8 | 216 | 4.3e-69 | 262.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76933.t1 | A0A072TVM1 | 97.6 | 254 | 5 | 1 | 1 | 254 | 1 | 253 | 3.8e-127 | 463.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76933 | MS.gene79463 | PPI |
| MS.gene030474 | MS.gene76933 | PPI |
| MS.gene76933 | MS.gene70529 | PPI |
| MS.gene76933 | MS.gene46188 | PPI |
| MS.gene76933 | MS.gene048962 | PPI |
| MS.gene55828 | MS.gene76933 | PPI |
| MS.gene044269 | MS.gene76933 | PPI |
| MS.gene000529 | MS.gene76933 | PPI |
| MS.gene063278 | MS.gene76933 | PPI |
| MS.gene76933 | MS.gene25769 | PPI |
| MS.gene90281 | MS.gene76933 | PPI |
| MS.gene69746 | MS.gene76933 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76933.t1 | MTR_7g007490 | 97.638 | 254 | 5 | 1 | 1 | 254 | 1 | 253 | 0.0 | 498 |
| MS.gene76933.t1 | MTR_5g092600 | 78.039 | 255 | 52 | 3 | 1 | 254 | 1 | 252 | 6.19e-141 | 395 |
| MS.gene76933.t1 | MTR_8g096320 | 52.814 | 231 | 108 | 1 | 3 | 232 | 2 | 232 | 6.88e-85 | 254 |
| MS.gene76933.t1 | MTR_5g067530 | 54.717 | 212 | 95 | 1 | 6 | 216 | 5 | 216 | 7.64e-77 | 234 |
| MS.gene76933.t1 | MTR_7g405730 | 46.693 | 257 | 118 | 1 | 3 | 240 | 2 | 258 | 4.99e-75 | 229 |
| MS.gene76933.t1 | MTR_3g098910 | 47.826 | 253 | 125 | 4 | 1 | 252 | 1 | 247 | 8.61e-75 | 230 |
| MS.gene76933.t1 | MTR_7g405710 | 53.394 | 221 | 103 | 0 | 3 | 223 | 2 | 222 | 1.24e-74 | 228 |
| MS.gene76933.t1 | MTR_2g007890 | 46.923 | 260 | 122 | 4 | 1 | 253 | 3 | 253 | 3.79e-72 | 222 |
| MS.gene76933.t1 | MTR_8g096310 | 46.281 | 242 | 124 | 3 | 6 | 246 | 5 | 241 | 3.74e-71 | 219 |
| MS.gene76933.t1 | MTR_3g098930 | 50.505 | 198 | 95 | 3 | 4 | 199 | 4 | 200 | 5.87e-60 | 188 |
| MS.gene76933.t1 | MTR_8g096320 | 50.847 | 177 | 86 | 1 | 57 | 232 | 1 | 177 | 1.94e-57 | 182 |
| MS.gene76933.t1 | MTR_1g029380 | 41.176 | 221 | 123 | 3 | 12 | 228 | 7 | 224 | 2.13e-51 | 168 |
| MS.gene76933.t1 | MTR_2g436310 | 38.009 | 221 | 134 | 1 | 14 | 231 | 9 | 229 | 3.96e-51 | 167 |
| MS.gene76933.t1 | MTR_3g089125 | 37.553 | 237 | 143 | 3 | 7 | 240 | 2 | 236 | 9.98e-51 | 166 |
| MS.gene76933.t1 | MTR_8g099730 | 35.060 | 251 | 148 | 4 | 1 | 240 | 9 | 255 | 1.63e-44 | 150 |
| MS.gene76933.t1 | MTR_6g007633 | 37.500 | 240 | 132 | 6 | 12 | 247 | 10 | 235 | 1.58e-42 | 145 |
| MS.gene76933.t1 | MTR_3g080990 | 35.391 | 243 | 147 | 2 | 14 | 254 | 12 | 246 | 3.04e-42 | 145 |
| MS.gene76933.t1 | MTR_6g007623 | 37.327 | 217 | 132 | 3 | 12 | 224 | 7 | 223 | 1.06e-41 | 142 |
| MS.gene76933.t1 | MTR_6g007637 | 37.321 | 209 | 128 | 2 | 12 | 217 | 11 | 219 | 3.36e-40 | 139 |
| MS.gene76933.t1 | MTR_8g042490 | 36.620 | 213 | 128 | 3 | 14 | 222 | 18 | 227 | 7.83e-39 | 135 |
| MS.gene76933.t1 | MTR_1g028460 | 31.818 | 242 | 148 | 2 | 11 | 248 | 7 | 235 | 5.29e-36 | 129 |
| MS.gene76933.t1 | MTR_2g073190 | 34.123 | 211 | 136 | 2 | 14 | 222 | 18 | 227 | 3.26e-34 | 130 |
| MS.gene76933.t1 | MTR_3g090950 | 29.958 | 237 | 160 | 2 | 6 | 238 | 2 | 236 | 1.17e-32 | 120 |
| MS.gene76933.t1 | MTR_4g106990 | 37.097 | 186 | 115 | 1 | 30 | 213 | 35 | 220 | 2.30e-32 | 119 |
| MS.gene76933.t1 | MTR_3g090940 | 30.196 | 255 | 151 | 5 | 6 | 248 | 2 | 241 | 1.74e-31 | 117 |
| MS.gene76933.t1 | MTR_8g099730 | 35.165 | 182 | 105 | 3 | 68 | 240 | 14 | 191 | 1.38e-28 | 107 |
| MS.gene76933.t1 | MTR_6g007610 | 29.536 | 237 | 138 | 7 | 12 | 230 | 10 | 235 | 1.91e-24 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76933.t1 | AT2G39060 | 57.959 | 245 | 97 | 3 | 7 | 251 | 6 | 244 | 7.55e-89 | 264 |
| MS.gene76933.t1 | AT5G50790 | 51.915 | 235 | 110 | 2 | 3 | 234 | 2 | 236 | 7.98e-82 | 247 |
| MS.gene76933.t1 | AT5G13170 | 50.442 | 226 | 110 | 2 | 5 | 228 | 6 | 231 | 4.21e-78 | 238 |
| MS.gene76933.t1 | AT3G48740 | 50.901 | 222 | 109 | 0 | 5 | 226 | 6 | 227 | 4.69e-76 | 233 |
| MS.gene76933.t1 | AT5G50800 | 50.213 | 235 | 114 | 2 | 3 | 234 | 2 | 236 | 7.60e-75 | 229 |
| MS.gene76933.t1 | AT5G23660 | 49.115 | 226 | 114 | 1 | 4 | 228 | 4 | 229 | 4.12e-73 | 225 |
| MS.gene76933.t1 | AT4G25010 | 52.273 | 220 | 104 | 1 | 9 | 227 | 8 | 227 | 5.06e-71 | 219 |
| MS.gene76933.t1 | AT1G21460 | 40.486 | 247 | 134 | 5 | 12 | 253 | 7 | 245 | 2.72e-53 | 173 |
| MS.gene76933.t1 | AT4G15920 | 38.197 | 233 | 120 | 5 | 14 | 232 | 9 | 231 | 4.35e-50 | 164 |
| MS.gene76933.t1 | AT3G16690 | 35.238 | 210 | 133 | 2 | 14 | 221 | 9 | 217 | 6.31e-44 | 148 |
| MS.gene76933.t1 | AT4G10850 | 34.375 | 224 | 141 | 3 | 12 | 232 | 12 | 232 | 1.00e-43 | 149 |
| MS.gene76933.t1 | AT3G16690 | 35.238 | 210 | 133 | 2 | 14 | 221 | 44 | 252 | 1.03e-43 | 149 |
| MS.gene76933.t1 | AT5G53190 | 35.458 | 251 | 153 | 5 | 8 | 252 | 4 | 251 | 9.48e-43 | 146 |
| MS.gene76933.t1 | AT5G62850 | 33.333 | 228 | 144 | 4 | 7 | 229 | 5 | 229 | 2.42e-41 | 142 |
| MS.gene76933.t1 | AT1G21460 | 41.146 | 192 | 110 | 2 | 12 | 201 | 7 | 197 | 3.03e-41 | 140 |
| MS.gene76933.t1 | AT5G40260 | 37.083 | 240 | 126 | 6 | 7 | 227 | 5 | 238 | 3.40e-40 | 139 |
| MS.gene76933.t1 | AT1G66770 | 36.626 | 243 | 138 | 6 | 12 | 243 | 12 | 249 | 9.26e-40 | 138 |
| MS.gene76933.t1 | AT3G14770 | 33.333 | 222 | 129 | 4 | 14 | 226 | 18 | 229 | 6.51e-36 | 128 |
| MS.gene76933.t1 | AT5G40260 | 38.579 | 197 | 105 | 4 | 8 | 194 | 6 | 196 | 8.32e-34 | 121 |
| MS.gene76933.t1 | AT3G28007 | 38.498 | 213 | 123 | 4 | 12 | 219 | 10 | 219 | 2.04e-33 | 122 |
| MS.gene76933.t1 | AT5G62850 | 33.333 | 195 | 122 | 4 | 5 | 194 | 3 | 194 | 1.61e-32 | 118 |
| MS.gene76933.t1 | AT3G16690 | 31.492 | 181 | 107 | 4 | 14 | 192 | 9 | 174 | 1.52e-21 | 89.4 |
Find 43 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAGTACCTTAAGCTTTC+TGG | 0.093746 | 7.2:+90747214 | None:intergenic |
| GCATTGTTATTGCTATATTA+TGG | 0.220036 | 7.2:-90747332 | MS.gene76933:CDS |
| GAAAGTACCATTATGCTTAA+AGG | 0.226693 | 7.2:+90746200 | None:intergenic |
| TTTCTTGTAAATTGAATAGA+AGG | 0.294119 | 7.2:+90747406 | None:intergenic |
| TGCAGCTCCTTTAAGCATAA+TGG | 0.310274 | 7.2:-90746207 | MS.gene76933:intron |
| TCCTTTCGTGTTCATGCTGT+TGG | 0.318048 | 7.2:-90746263 | MS.gene76933:CDS |
| TGACAAGGATAACTACATTA+TGG | 0.318626 | 7.2:-90745323 | MS.gene76933:intron |
| AGAAACAATGATAAAGAAAA+TGG | 0.318887 | 7.2:+90745385 | None:intergenic |
| ATTGATTGTGATAATCAAAA+TGG | 0.322958 | 7.2:+90747292 | None:intergenic |
| TCAAAATGGCATTGGTCTTA+AGG | 0.334310 | 7.2:+90747306 | None:intergenic |
| ATTATCACAATCAATTGTAT+TGG | 0.347338 | 7.2:-90747284 | MS.gene76933:CDS |
| TATCAGCTACCAAATGTGTT+AGG | 0.359344 | 7.2:-90745189 | MS.gene76933:intron |
| GTTGCTGACCTAGGAGGTCT+TGG | 0.368055 | 7.2:-90746323 | MS.gene76933:CDS |
| AATGTGTTAGGATTTCTATT+TGG | 0.380379 | 7.2:-90745177 | MS.gene76933:CDS |
| TTAAGTACCTTAAGCTTTCT+GGG | 0.384570 | 7.2:+90747215 | None:intergenic |
| CATATATGATGTACATGATT+AGG | 0.387583 | 7.2:+90747240 | None:intergenic |
| TCTTAGCATTCTTGTATATG+AGG | 0.388872 | 7.2:+90745133 | None:intergenic |
| CTAAGAAGTGCAACTACATA+TGG | 0.405787 | 7.2:+90747356 | None:intergenic |
| AGGTAACATTGTCTCATTCA+TGG | 0.424995 | 7.2:-90747558 | MS.gene76933:CDS |
| CCTTTCGTGTTCATGCTGTT+GGG | 0.431442 | 7.2:-90746262 | MS.gene76933:CDS |
| AATAGAAATCCTAACACATT+TGG | 0.432242 | 7.2:+90745180 | None:intergenic |
| ATATGCTCCCAGAAAGCTTA+AGG | 0.441764 | 7.2:-90747222 | MS.gene76933:intron |
| AACCATCTCGTGATCAGAAA+AGG | 0.467285 | 7.2:+90748242 | None:intergenic |
| TTTATACTTGTTGCTGACCT+AGG | 0.468356 | 7.2:-90746332 | MS.gene76933:CDS |
| CATGATAATCACCTTCTTTG+TGG | 0.472006 | 7.2:-90746294 | MS.gene76933:CDS |
| CATGAACATGGTTGTGATGA+TGG | 0.472085 | 7.2:-90745078 | MS.gene76933:CDS |
| TGAATTGCAGATATCCACTT+TGG | 0.495123 | 7.2:-90746357 | MS.gene76933:intron |
| ATTTCAACCACCACTACTGA+AGG | 0.512650 | 7.2:+90745039 | None:intergenic |
| TTGTAAATTGAATAGAAGGT+TGG | 0.536740 | 7.2:+90747410 | None:intergenic |
| TGGTCAAGCCAAGACCTCCT+AGG | 0.539989 | 7.2:+90746315 | None:intergenic |
| CACAAAGAAGGTGATTATCA+TGG | 0.546705 | 7.2:+90746295 | None:intergenic |
| GGAGGACTTCACCACAAAGA+AGG | 0.572054 | 7.2:+90746283 | None:intergenic |
| TGTGATAATCAAAATGGCAT+TGG | 0.577404 | 7.2:+90747298 | None:intergenic |
| TTTCTATGGTCTCTTTGACA+AGG | 0.585997 | 7.2:-90745338 | MS.gene76933:CDS |
| TTACTCTCTGTGCCACCATG+TGG | 0.592006 | 7.2:-90745363 | MS.gene76933:CDS |
| AGAGGACTTACAATGGTGCT+AGG | 0.596356 | 7.2:+90747531 | None:intergenic |
| ATACTTGTTGCTGACCTAGG+AGG | 0.597667 | 7.2:-90746329 | MS.gene76933:CDS |
| AGAGTTCCCTTCAGTAGTGG+TGG | 0.599805 | 7.2:-90745046 | MS.gene76933:CDS |
| ACTGAGCAGCAGCATGAACA+TGG | 0.605926 | 7.2:-90745090 | MS.gene76933:CDS |
| CCCAACAGCATGAACACGAA+AGG | 0.607543 | 7.2:+90746262 | None:intergenic |
| AACAGCATGAACACGAAAGG+AGG | 0.617910 | 7.2:+90746265 | None:intergenic |
| ACAAGAGTTCCCTTCAGTAG+TGG | 0.628149 | 7.2:-90745049 | MS.gene76933:CDS |
| TTTCAACCACCACTACTGAA+GGG | 0.651912 | 7.2:+90745040 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAAAAACAATAAAAT+TGG | - | chr7.2:90747582-90747601 | MS.gene76933:intron | 10.0% |
| !! | AATATTACATATGTTAAAAT+TGG | + | chr7.2:90746201-90746220 | None:intergenic | 10.0% |
| !!! | ATGAATATTACTATTTTTTT+TGG | - | chr7.2:90745797-90745816 | MS.gene76933:intron | 10.0% |
| !!! | TGAATATTACTATTTTTTTT+GGG | - | chr7.2:90745798-90745817 | MS.gene76933:intron | 10.0% |
| !! | AATTAAGTATATAAGATGAA+TGG | + | chr7.2:90747106-90747125 | None:intergenic | 15.0% |
| !! | ATATATATATATATAACGTG+TGG | - | chr7.2:90746870-90746889 | MS.gene76933:intron | 15.0% |
| !! | TAATAAATCCAAAGAAAAAA+AGG | + | chr7.2:90746565-90746584 | None:intergenic | 15.0% |
| !!! | TAATTTAACTTTTTCTTGTA+GGG | - | chr7.2:90747696-90747715 | MS.gene76933:intron | 15.0% |
| !!! | TACTTTCTAATATTTTTCAA+GGG | - | chr7.2:90747226-90747245 | MS.gene76933:CDS | 15.0% |
| !!! | TATTTTTAGTGAATACATTA+AGG | - | chr7.2:90745581-90745600 | MS.gene76933:intron | 15.0% |
| !!! | TTATTTAATTTATTTGAGAG+AGG | + | chr7.2:90745759-90745778 | None:intergenic | 15.0% |
| !!! | TTTATATACCTTTTTTTCTT+TGG | - | chr7.2:90746554-90746573 | MS.gene76933:intron | 15.0% |
| !! | AAGAAAGATTAATACAAACA+TGG | + | chr7.2:90746530-90746549 | None:intergenic | 20.0% |
| !! | AGAAACAATGATAAAGAAAA+TGG | + | chr7.2:90747887-90747906 | None:intergenic | 20.0% |
| !! | ATTATCACAATCAATTGTAT+TGG | - | chr7.2:90745985-90746004 | MS.gene76933:intron | 20.0% |
| !! | ATTGATTGTGATAATCAAAA+TGG | + | chr7.2:90745980-90745999 | None:intergenic | 20.0% |
| !! | CTCAGTTAAAAAAAATCAAA+TGG | - | chr7.2:90747144-90747163 | MS.gene76933:intron | 20.0% |
| !! | CTTCACAACTATAAATATAA+CGG | - | chr7.2:90747633-90747652 | MS.gene76933:intron | 20.0% |
| !! | TAAAAAATATGAGTATCTTG+AGG | - | chr7.2:90746669-90746688 | MS.gene76933:intron | 20.0% |
| !! | TATAACATCAAAGTTGAAAA+TGG | + | chr7.2:90745129-90745148 | None:intergenic | 20.0% |
| !! | TTTCTTGTAAATTGAATAGA+AGG | + | chr7.2:90745866-90745885 | None:intergenic | 20.0% |
| !!! | CATTTGATTTTTTTTAACTG+AGG | + | chr7.2:90747146-90747165 | None:intergenic | 20.0% |
| !!! | CTAATTTAACTTTTTCTTGT+AGG | - | chr7.2:90747695-90747714 | MS.gene76933:intron | 20.0% |
| !!! | GTACTTTCTAATATTTTTCA+AGG | - | chr7.2:90747225-90747244 | MS.gene76933:CDS | 20.0% |
| !!! | GTTTTTCTGTCTTTAATTAT+CGG | - | chr7.2:90747669-90747688 | MS.gene76933:intron | 20.0% |
| !!! | TAAAAGCATAAGCAATTTAA+AGG | - | chr7.2:90746643-90746662 | MS.gene76933:intron | 20.0% |
| !!! | TTTTTCTGTCTTTAATTATC+GGG | - | chr7.2:90747670-90747689 | MS.gene76933:intron | 20.0% |
| ! | AAAGAAAATGCAAATGTAAG+AGG | - | chr7.2:90746753-90746772 | MS.gene76933:intron | 25.0% |
| ! | AAAGACTGCAATGTTAAAAA+TGG | + | chr7.2:90747043-90747062 | None:intergenic | 25.0% |
| ! | AACAAGTATAAAAACCAAAG+TGG | + | chr7.2:90746929-90746948 | None:intergenic | 25.0% |
| ! | AATAGAAATCCTAACACATT+TGG | + | chr7.2:90748092-90748111 | None:intergenic | 25.0% |
| ! | AATGTGTTAGGATTTCTATT+TGG | - | chr7.2:90748092-90748111 | MS.gene76933:intron | 25.0% |
| ! | ACAAGAAAAAATCATCTGAA+GGG | - | chr7.2:90745878-90745897 | MS.gene76933:intron | 25.0% |
| ! | ACACTTTCAATATGAAATCT+TGG | + | chr7.2:90746398-90746417 | None:intergenic | 25.0% |
| ! | CATATATGATGTACATGATT+AGG | + | chr7.2:90746032-90746051 | None:intergenic | 25.0% |
| ! | GTTAAGAATATGTTCAGAAT+AGG | + | chr7.2:90747317-90747336 | None:intergenic | 25.0% |
| ! | TACAAGAAAAAATCATCTGA+AGG | - | chr7.2:90745877-90745896 | MS.gene76933:intron | 25.0% |
| ! | TAGTGCATGTAAAATTAAGA+TGG | + | chr7.2:90747532-90747551 | None:intergenic | 25.0% |
| ! | TTGTAAATTGAATAGAAGGT+TGG | + | chr7.2:90745862-90745881 | None:intergenic | 25.0% |
| !! | GCATTGTTATTGCTATATTA+TGG | - | chr7.2:90745937-90745956 | MS.gene76933:intron | 25.0% |
| !!! | ATCTTGGTGTTACATATATT+AGG | + | chr7.2:90746382-90746401 | None:intergenic | 25.0% |
| !!! | CAAAATTGGATTAGTAATGT+TGG | + | chr7.2:90747740-90747759 | None:intergenic | 25.0% |
| !!! | TTTTTAACTGAGGTGAATTT+GGG | + | chr7.2:90747136-90747155 | None:intergenic | 25.0% |
| !!! | TTTTTTAACTGAGGTGAATT+TGG | + | chr7.2:90747137-90747156 | None:intergenic | 25.0% |
| AAACATAGAGAATAAGAACC+AGG | + | chr7.2:90745677-90745696 | None:intergenic | 30.0% | |
| AATTTGTACATGAATTGCAG+AGG | - | chr7.2:90747828-90747847 | MS.gene76933:intron | 30.0% | |
| ACATTAATTGTGGAAAAGTG+AGG | - | chr7.2:90745193-90745212 | MS.gene76933:intron | 30.0% | |
| AGAAAAGATTGGAGTAAGAA+TGG | + | chr7.2:90745096-90745115 | None:intergenic | 30.0% | |
| ATCAACTACGACTTGTATTT+AGG | - | chr7.2:90747462-90747481 | MS.gene76933:intron | 30.0% | |
| ATGTTACCTAGACACAAAAA+AGG | + | chr7.2:90745700-90745719 | None:intergenic | 30.0% | |
| ATTAAGTACCTTAAGCTTTC+TGG | + | chr7.2:90746058-90746077 | None:intergenic | 30.0% | |
| CTATAATCGCAAATTAGAGA+TGG | + | chr7.2:90746237-90746256 | None:intergenic | 30.0% | |
| GAAAAGATTGGAGTAAGAAT+GGG | + | chr7.2:90745095-90745114 | None:intergenic | 30.0% | |
| GTAGTTTATAACACTCCTAA+GGG | + | chr7.2:90746349-90746368 | None:intergenic | 30.0% | |
| TAGAGCTTACACATTAATTG+TGG | - | chr7.2:90745183-90745202 | MS.gene76933:CDS | 30.0% | |
| TCTTAGCATTCTTGTATATG+AGG | + | chr7.2:90748139-90748158 | None:intergenic | 30.0% | |
| TGACAAGGATAACTACATTA+TGG | - | chr7.2:90747946-90747965 | MS.gene76933:intron | 30.0% | |
| TGTAGTTTATAACACTCCTA+AGG | + | chr7.2:90746350-90746369 | None:intergenic | 30.0% | |
| TGTGATAATCAAAATGGCAT+TGG | + | chr7.2:90745974-90745993 | None:intergenic | 30.0% | |
| TTAAGTACCTTAAGCTTTCT+GGG | + | chr7.2:90746057-90746076 | None:intergenic | 30.0% | |
| !! | GAAAGTACCATTATGCTTAA+AGG | + | chr7.2:90747072-90747091 | None:intergenic | 30.0% |
| !! | TTTGTTATTCTATCTCTTGC+AGG | - | chr7.2:90745836-90745855 | MS.gene76933:intron | 30.0% |
| !!! | ATGTTTCCTTTTTTGTGTCT+AGG | - | chr7.2:90745691-90745710 | MS.gene76933:intron | 30.0% |
| AATATGAGTATCTTGAGGCT+TGG | - | chr7.2:90746674-90746693 | MS.gene76933:intron | 35.0% | |
| ACAAGTTTAGCTAGATCGAT+TGG | + | chr7.2:90745327-90745346 | None:intergenic | 35.0% | |
| ACGACTTGTATTTAGGAACA+TGG | - | chr7.2:90747469-90747488 | MS.gene76933:intron | 35.0% | |
| AGGTAACATTGTCTCATTCA+TGG | - | chr7.2:90745711-90745730 | MS.gene76933:intron | 35.0% | |
| ATAAGAACCAGGATCATAGT+AGG | + | chr7.2:90745666-90745685 | None:intergenic | 35.0% | |
| ATCAAAGTTGAAAATGGTGC+AGG | + | chr7.2:90745123-90745142 | None:intergenic | 35.0% | |
| ATCGTACTAACTCATGTTCT+AGG | + | chr7.2:90746592-90746611 | None:intergenic | 35.0% | |
| ATTTGAGAGAGGACTTACAA+TGG | + | chr7.2:90745748-90745767 | None:intergenic | 35.0% | |
| CACAAAGAAGGTGATTATCA+TGG | + | chr7.2:90746977-90746996 | None:intergenic | 35.0% | |
| CACAAGAAAAACACTCCTAA+GGG | + | chr7.2:90746317-90746336 | None:intergenic | 35.0% | |
| CATGATAATCACCTTCTTTG+TGG | - | chr7.2:90746975-90746994 | MS.gene76933:intron | 35.0% | |
| CGACATGTATTTAGAAACGA+AGG | + | chr7.2:90747265-90747284 | None:intergenic | 35.0% | |
| TATCAGCTACCAAATGTGTT+AGG | - | chr7.2:90748080-90748099 | MS.gene76933:intron | 35.0% | |
| TCAAAGTTGAAAATGGTGCA+GGG | + | chr7.2:90745122-90745141 | None:intergenic | 35.0% | |
| TCACAAGAAAAACACTCCTA+AGG | + | chr7.2:90746318-90746337 | None:intergenic | 35.0% | |
| TGAATTGCAGATATCCACTT+TGG | - | chr7.2:90746912-90746931 | MS.gene76933:intron | 35.0% | |
| TTAGATCATGCACACTATTC+AGG | - | chr7.2:90747288-90747307 | MS.gene76933:CDS | 35.0% | |
| TTTCTATGGTCTCTTTGACA+AGG | - | chr7.2:90747931-90747950 | MS.gene76933:intron | 35.0% | |
| ! | CTAAGAAGTGCAACTACATA+TGG | + | chr7.2:90745916-90745935 | None:intergenic | 35.0% |
| ! | GTGTCACTACTAGACAAAAT+TGG | + | chr7.2:90747754-90747773 | None:intergenic | 35.0% |
| ! | TTTATACTTGTTGCTGACCT+AGG | - | chr7.2:90746937-90746956 | MS.gene76933:intron | 35.0% |
| !! | ACAATGAGAAGTGGTTCTAA+GGG | + | chr7.2:90747502-90747521 | None:intergenic | 35.0% |
| !! | GTTTTGATCTTTGGTCTTCT+AGG | - | chr7.2:90745047-90745066 | MS.gene76933:CDS | 35.0% |
| !! | TCAAAATGGCATTGGTCTTA+AGG | + | chr7.2:90745966-90745985 | None:intergenic | 35.0% |
| !!! | TTTTTTCGTCAAGTAGCTAG+AGG | - | chr7.2:90745159-90745178 | MS.gene76933:CDS | 35.0% |
| AACCATCTCGTGATCAGAAA+AGG | + | chr7.2:90745030-90745049 | None:intergenic | 40.0% | |
| ACCATAGAAAAACCACATGG+TGG | + | chr7.2:90747921-90747940 | None:intergenic | 40.0% | |
| ATATGCTCCCAGAAAGCTTA+AGG | - | chr7.2:90746047-90746066 | MS.gene76933:intron | 40.0% | |
| ATTTCAACCACCACTACTGA+AGG | + | chr7.2:90748233-90748252 | None:intergenic | 40.0% | |
| CATGAACATGGTTGTGATGA+TGG | - | chr7.2:90748191-90748210 | MS.gene76933:intron | 40.0% | |
| CTTAGAACCACTTCTCATTG+TGG | - | chr7.2:90747501-90747520 | MS.gene76933:intron | 40.0% | |
| CTTGTGAAAGAGTTACCCTT+AGG | - | chr7.2:90746331-90746350 | MS.gene76933:CDS | 40.0% | |
| GAGACCATAGAAAAACCACA+TGG | + | chr7.2:90747924-90747943 | None:intergenic | 40.0% | |
| GTGCAGGGAAAAGAAAAGAT+TGG | + | chr7.2:90745107-90745126 | None:intergenic | 40.0% | |
| TAGTAGGCAAAACTGAAAGC+TGG | + | chr7.2:90745650-90745669 | None:intergenic | 40.0% | |
| TGACACGACACTGATATAAG+CGG | - | chr7.2:90746432-90746451 | MS.gene76933:intron | 40.0% | |
| TGCAGCTCCTTTAAGCATAA+TGG | - | chr7.2:90747062-90747081 | MS.gene76933:intron | 40.0% | |
| TGTACATGAATTGCAGAGGA+AGG | - | chr7.2:90747832-90747851 | MS.gene76933:intron | 40.0% | |
| TTTCAACCACCACTACTGAA+GGG | + | chr7.2:90748232-90748251 | None:intergenic | 40.0% | |
| ! | AGTTTTGCCTACTATGATCC+TGG | - | chr7.2:90745656-90745675 | MS.gene76933:intron | 40.0% |
| ! | CACAATGAGAAGTGGTTCTA+AGG | + | chr7.2:90747503-90747522 | None:intergenic | 40.0% |
| ! | TTCCTTTTCTGATCACGAGA+TGG | - | chr7.2:90745025-90745044 | MS.gene76933:CDS | 40.0% |
| !!! | CACGAGATGGTTTTGATCTT+TGG | - | chr7.2:90745038-90745057 | MS.gene76933:CDS | 40.0% |
| AACAGCATGAACACGAAAGG+AGG | + | chr7.2:90747007-90747026 | None:intergenic | 45.0% | |
| ACAAGAGTTCCCTTCAGTAG+TGG | - | chr7.2:90748220-90748239 | MS.gene76933:intron | 45.0% | |
| AGAGGACTTACAATGGTGCT+AGG | + | chr7.2:90745741-90745760 | None:intergenic | 45.0% | |
| CCTTTCGTGTTCATGCTGTT+GGG | - | chr7.2:90747007-90747026 | MS.gene76933:intron | 45.0% | |
| GAGTGCATGTGATTACCCTT+AGG | - | chr7.2:90746299-90746318 | MS.gene76933:CDS | 45.0% | |
| GGATTCTCCACAATGAGAAG+TGG | + | chr7.2:90747511-90747530 | None:intergenic | 45.0% | |
| GGTAATCACATGCACTCTAG+AGG | + | chr7.2:90746296-90746315 | None:intergenic | 45.0% | |
| TCCTTTCGTGTTCATGCTGT+TGG | - | chr7.2:90747006-90747025 | MS.gene76933:intron | 45.0% | |
| ! | ATACTTGTTGCTGACCTAGG+AGG | - | chr7.2:90746940-90746959 | MS.gene76933:intron | 45.0% |
| ! | GCCACCATGTGGTTTTTCTA+TGG | - | chr7.2:90747917-90747936 | MS.gene76933:intron | 45.0% |
| !! | TAAAAGAAAAATTAATTAAT+AGG | + | chr7.2:90748001-90748020 | None:intergenic | 5.0% |
| ACTGAGCAGCAGCATGAACA+TGG | - | chr7.2:90748179-90748198 | MS.gene76933:intron | 50.0% | |
| AGAGTTCCCTTCAGTAGTGG+TGG | - | chr7.2:90748223-90748242 | MS.gene76933:CDS | 50.0% | |
| CCCAACAGCATGAACACGAA+AGG | + | chr7.2:90747010-90747029 | None:intergenic | 50.0% | |
| GGAGGACTTCACCACAAAGA+AGG | + | chr7.2:90746989-90747008 | None:intergenic | 50.0% | |
| TTACTCTCTGTGCCACCATG+TGG | - | chr7.2:90747906-90747925 | MS.gene76933:intron | 50.0% | |
| ATCCCCGTGAGCTTAGCTCA+GGG | + | chr7.2:90745241-90745260 | None:intergenic | 55.0% | |
| GTTGCTGACCTAGGAGGTCT+TGG | - | chr7.2:90746946-90746965 | MS.gene76933:intron | 55.0% | |
| TGGTCAAGCCAAGACCTCCT+AGG | + | chr7.2:90746957-90746976 | None:intergenic | 55.0% | |
| ! | GTGTCGTGTCAGTGTCGAGT+TGG | + | chr7.2:90746423-90746442 | None:intergenic | 55.0% |
| AGCCCCTGAGCTAAGCTCAC+GGG | - | chr7.2:90745235-90745254 | MS.gene76933:intron | 60.0% | |
| AGGGGCTGGAGTTCGAACTC+TGG | + | chr7.2:90745222-90745241 | None:intergenic | 60.0% | |
| CAGCCCCTGAGCTAAGCTCA+CGG | - | chr7.2:90745234-90745253 | MS.gene76933:intron | 60.0% | |
| GATCCCCGTGAGCTTAGCTC+AGG | + | chr7.2:90745242-90745261 | None:intergenic | 60.0% | |
| TCCCCGTGAGCTTAGCTCAG+GGG | + | chr7.2:90745240-90745259 | None:intergenic | 60.0% | |
| CGTGAGCTTAGCTCAGGGGC+TGG | + | chr7.2:90745236-90745255 | None:intergenic | 65.0% | |
| GCCCCTGAGCTAAGCTCACG+GGG | - | chr7.2:90745236-90745255 | MS.gene76933:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 90745020 | 90748271 | 90745020 | ID=MS.gene76933 |
| chr7.2 | mRNA | 90745020 | 90748271 | 90745020 | ID=MS.gene76933.t1;Parent=MS.gene76933 |
| chr7.2 | exon | 90748223 | 90748271 | 90748223 | ID=MS.gene76933.t1.exon1;Parent=MS.gene76933.t1 |
| chr7.2 | CDS | 90748223 | 90748271 | 90748223 | ID=cds.MS.gene76933.t1;Parent=MS.gene76933.t1 |
| chr7.2 | exon | 90747542 | 90747578 | 90747542 | ID=MS.gene76933.t1.exon2;Parent=MS.gene76933.t1 |
| chr7.2 | CDS | 90747542 | 90747578 | 90747542 | ID=cds.MS.gene76933.t1;Parent=MS.gene76933.t1 |
| chr7.2 | exon | 90747223 | 90747433 | 90747223 | ID=MS.gene76933.t1.exon3;Parent=MS.gene76933.t1 |
| chr7.2 | CDS | 90747223 | 90747433 | 90747223 | ID=cds.MS.gene76933.t1;Parent=MS.gene76933.t1 |
| chr7.2 | exon | 90746208 | 90746369 | 90746208 | ID=MS.gene76933.t1.exon4;Parent=MS.gene76933.t1 |
| chr7.2 | CDS | 90746208 | 90746369 | 90746208 | ID=cds.MS.gene76933.t1;Parent=MS.gene76933.t1 |
| chr7.2 | exon | 90745324 | 90745443 | 90745324 | ID=MS.gene76933.t1.exon5;Parent=MS.gene76933.t1 |
| chr7.2 | CDS | 90745324 | 90745443 | 90745324 | ID=cds.MS.gene76933.t1;Parent=MS.gene76933.t1 |
| chr7.2 | exon | 90745020 | 90745205 | 90745020 | ID=MS.gene76933.t1.exon6;Parent=MS.gene76933.t1 |
| chr7.2 | CDS | 90745020 | 90745205 | 90745020 | ID=cds.MS.gene76933.t1;Parent=MS.gene76933.t1 |
| Gene Sequence |
| Protein sequence |
