Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00065.t1 | XP_013463086.1 | 99 | 391 | 4 | 0 | 1 | 391 | 22 | 412 | 1.90E-224 | 788.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00065.t1 | Q9SA77 | 82.0 | 389 | 70 | 0 | 1 | 389 | 22 | 410 | 1.0e-191 | 670.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00065.t1 | A0A072VG20 | 99.0 | 391 | 4 | 0 | 1 | 391 | 22 | 412 | 1.3e-224 | 788.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene024690 | MS.gene00065 | PPI |
MS.gene21669 | MS.gene00065 | PPI |
MS.gene051082 | MS.gene00065 | PPI |
MS.gene052009 | MS.gene00065 | PPI |
MS.gene55805 | MS.gene00065 | PPI |
MS.gene22302 | MS.gene00065 | PPI |
MS.gene069594 | MS.gene00065 | PPI |
MS.gene22301 | MS.gene00065 | PPI |
MS.gene048934 | MS.gene00065 | PPI |
MS.gene25092 | MS.gene00065 | PPI |
MS.gene06078 | MS.gene00065 | PPI |
MS.gene074451 | MS.gene00065 | PPI |
MS.gene024691 | MS.gene00065 | PPI |
MS.gene032180 | MS.gene00065 | PPI |
MS.gene89158 | MS.gene00065 | PPI |
MS.gene21670 | MS.gene00065 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00065.t1 | MTR_2g032100 | 98.977 | 391 | 4 | 0 | 1 | 391 | 22 | 412 | 0.0 | 805 |
MS.gene00065.t1 | MTR_8g089180 | 84.576 | 389 | 60 | 0 | 1 | 389 | 22 | 410 | 0.0 | 695 |
MS.gene00065.t1 | MTR_8g089180 | 84.576 | 389 | 60 | 0 | 1 | 389 | 22 | 410 | 0.0 | 695 |
MS.gene00065.t1 | MTR_2g032100 | 99.257 | 269 | 2 | 0 | 1 | 269 | 22 | 290 | 0.0 | 553 |
MS.gene00065.t1 | MTR_5g009170 | 43.353 | 346 | 182 | 6 | 52 | 390 | 49 | 387 | 6.82e-85 | 264 |
MS.gene00065.t1 | MTR_8g096880 | 40.580 | 345 | 191 | 8 | 52 | 388 | 8 | 346 | 1.32e-81 | 254 |
MS.gene00065.t1 | MTR_4g134490 | 39.714 | 350 | 187 | 7 | 52 | 388 | 27 | 365 | 1.44e-81 | 254 |
MS.gene00065.t1 | MTR_8g099535 | 41.643 | 353 | 180 | 7 | 52 | 391 | 6 | 345 | 6.03e-81 | 252 |
MS.gene00065.t1 | MTR_4g134490 | 38.873 | 355 | 189 | 7 | 52 | 388 | 27 | 371 | 4.83e-80 | 251 |
MS.gene00065.t1 | MTR_5g009160 | 40.115 | 349 | 187 | 6 | 52 | 389 | 6 | 343 | 2.60e-78 | 245 |
MS.gene00065.t1 | MTR_8g096880 | 40.938 | 320 | 176 | 7 | 52 | 363 | 8 | 322 | 1.45e-75 | 237 |
MS.gene00065.t1 | MTR_8g096880 | 40.484 | 289 | 159 | 7 | 52 | 332 | 8 | 291 | 3.50e-64 | 207 |
MS.gene00065.t1 | MTR_5g009160 | 39.286 | 280 | 149 | 5 | 120 | 389 | 12 | 280 | 7.97e-60 | 196 |
MS.gene00065.t1 | MTR_5g009160 | 39.910 | 223 | 114 | 4 | 120 | 332 | 12 | 224 | 3.65e-47 | 160 |
MS.gene00065.t1 | MTR_1g009600 | 27.119 | 354 | 221 | 13 | 44 | 389 | 1 | 325 | 1.64e-27 | 114 |
MS.gene00065.t1 | MTR_4g102270 | 27.666 | 347 | 211 | 13 | 52 | 380 | 95 | 419 | 5.75e-25 | 105 |
MS.gene00065.t1 | MTR_4g129820 | 26.912 | 353 | 222 | 11 | 44 | 380 | 89 | 421 | 1.39e-24 | 104 |
MS.gene00065.t1 | MTR_2g073240 | 25.833 | 360 | 226 | 13 | 40 | 389 | 11 | 339 | 1.17e-23 | 103 |
MS.gene00065.t1 | MTR_5g011940 | 26.377 | 345 | 218 | 12 | 52 | 380 | 92 | 416 | 1.55e-23 | 102 |
MS.gene00065.t1 | MTR_0034s0060 | 25.215 | 349 | 222 | 12 | 51 | 389 | 138 | 457 | 4.62e-23 | 101 |
MS.gene00065.t1 | MTR_4g024600 | 26.087 | 345 | 219 | 12 | 52 | 380 | 103 | 427 | 1.24e-20 | 93.6 |
MS.gene00065.t1 | MTR_0354s0040 | 24.638 | 345 | 224 | 12 | 52 | 380 | 84 | 408 | 9.47e-19 | 87.8 |
MS.gene00065.t1 | MTR_3g084090 | 26.087 | 345 | 219 | 12 | 52 | 380 | 101 | 425 | 1.53e-17 | 84.3 |
MS.gene00065.t1 | MTR_4g063600 | 23.684 | 342 | 211 | 12 | 32 | 363 | 14 | 315 | 1.78e-16 | 80.1 |
MS.gene00065.t1 | MTR_4g063600 | 23.768 | 345 | 210 | 12 | 32 | 363 | 14 | 318 | 2.33e-16 | 80.1 |
MS.gene00065.t1 | MTR_4g120030 | 26.875 | 320 | 185 | 12 | 52 | 363 | 113 | 391 | 9.03e-15 | 75.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00065.t1 | AT1G30620 | 82.005 | 389 | 70 | 0 | 1 | 389 | 22 | 410 | 0.0 | 688 |
MS.gene00065.t1 | AT1G30620 | 82.005 | 389 | 70 | 0 | 1 | 389 | 22 | 410 | 0.0 | 688 |
MS.gene00065.t1 | AT1G30620 | 82.005 | 389 | 70 | 0 | 1 | 389 | 22 | 410 | 0.0 | 688 |
MS.gene00065.t1 | AT1G30620 | 82.005 | 389 | 70 | 0 | 1 | 389 | 22 | 410 | 0.0 | 688 |
MS.gene00065.t1 | AT1G30620 | 82.005 | 389 | 69 | 1 | 1 | 389 | 22 | 409 | 0.0 | 684 |
MS.gene00065.t1 | AT4G20460 | 82.097 | 391 | 70 | 0 | 1 | 391 | 21 | 411 | 0.0 | 684 |
MS.gene00065.t1 | AT5G44480 | 81.282 | 390 | 73 | 0 | 1 | 390 | 22 | 411 | 0.0 | 635 |
MS.gene00065.t1 | AT5G44480 | 81.282 | 390 | 73 | 0 | 1 | 390 | 22 | 411 | 0.0 | 635 |
MS.gene00065.t1 | AT5G44480 | 81.282 | 390 | 73 | 0 | 1 | 390 | 22 | 411 | 0.0 | 635 |
MS.gene00065.t1 | AT5G44480 | 81.282 | 390 | 73 | 0 | 1 | 390 | 46 | 435 | 0.0 | 635 |
MS.gene00065.t1 | AT1G30620 | 84.328 | 268 | 42 | 0 | 1 | 268 | 22 | 289 | 2.49e-171 | 480 |
MS.gene00065.t1 | AT2G34850 | 82.609 | 230 | 40 | 0 | 162 | 391 | 1 | 230 | 6.10e-143 | 406 |
MS.gene00065.t1 | AT2G34850 | 82.609 | 230 | 40 | 0 | 162 | 391 | 1 | 230 | 6.10e-143 | 406 |
MS.gene00065.t1 | AT2G34850 | 82.609 | 230 | 40 | 0 | 162 | 391 | 1 | 230 | 6.10e-143 | 406 |
MS.gene00065.t1 | AT2G34850 | 82.609 | 230 | 40 | 0 | 162 | 391 | 1 | 230 | 6.10e-143 | 406 |
MS.gene00065.t1 | AT1G64440 | 42.075 | 347 | 193 | 5 | 49 | 391 | 2 | 344 | 1.87e-89 | 274 |
MS.gene00065.t1 | AT4G10960 | 42.330 | 352 | 181 | 6 | 51 | 391 | 5 | 345 | 3.76e-88 | 271 |
MS.gene00065.t1 | AT4G23920 | 42.899 | 338 | 185 | 5 | 52 | 385 | 5 | 338 | 7.62e-85 | 262 |
MS.gene00065.t1 | AT1G12780 | 40.341 | 352 | 184 | 9 | 51 | 388 | 8 | 347 | 1.50e-82 | 256 |
MS.gene00065.t1 | AT1G63180 | 39.316 | 351 | 189 | 8 | 51 | 388 | 8 | 347 | 1.29e-80 | 251 |
MS.gene00065.t1 | AT1G63180 | 40.678 | 295 | 152 | 7 | 51 | 332 | 8 | 292 | 2.43e-67 | 216 |
MS.gene00065.t1 | AT1G78570 | 25.501 | 349 | 221 | 12 | 51 | 389 | 8 | 327 | 2.49e-23 | 102 |
MS.gene00065.t1 | AT3G14790 | 24.928 | 349 | 223 | 12 | 51 | 389 | 8 | 327 | 3.07e-22 | 99.4 |
MS.gene00065.t1 | AT3G14790 | 24.928 | 349 | 223 | 12 | 51 | 389 | 11 | 330 | 3.14e-22 | 99.4 |
MS.gene00065.t1 | AT1G53500 | 25.360 | 347 | 224 | 12 | 51 | 389 | 10 | 329 | 1.43e-21 | 97.1 |
MS.gene00065.t1 | AT4G30440 | 27.195 | 353 | 221 | 12 | 44 | 380 | 82 | 414 | 2.62e-21 | 95.5 |
MS.gene00065.t1 | AT4G00110 | 26.136 | 352 | 224 | 12 | 52 | 387 | 93 | 424 | 7.06e-21 | 94.4 |
MS.gene00065.t1 | AT2G45310 | 25.000 | 348 | 226 | 12 | 48 | 380 | 96 | 423 | 2.06e-20 | 92.8 |
MS.gene00065.t1 | AT1G02000 | 25.797 | 345 | 220 | 12 | 52 | 380 | 94 | 418 | 6.73e-20 | 91.3 |
MS.gene00065.t1 | AT4G12250 | 26.667 | 345 | 217 | 12 | 52 | 380 | 98 | 422 | 1.39e-19 | 90.5 |
MS.gene00065.t1 | AT3G53520 | 27.673 | 318 | 190 | 11 | 52 | 363 | 122 | 405 | 4.57e-18 | 85.9 |
MS.gene00065.t1 | AT2G47650 | 28.037 | 321 | 191 | 12 | 49 | 363 | 120 | 406 | 1.12e-17 | 84.7 |
MS.gene00065.t1 | AT3G62830 | 27.673 | 318 | 190 | 12 | 52 | 363 | 121 | 404 | 8.97e-17 | 82.0 |
MS.gene00065.t1 | AT3G62830 | 27.673 | 318 | 190 | 12 | 52 | 363 | 121 | 404 | 8.97e-17 | 82.0 |
MS.gene00065.t1 | AT3G23820 | 24.419 | 344 | 226 | 10 | 52 | 380 | 114 | 438 | 4.13e-16 | 80.1 |
MS.gene00065.t1 | AT3G53520 | 27.358 | 318 | 189 | 12 | 52 | 363 | 122 | 403 | 6.07e-16 | 79.3 |
MS.gene00065.t1 | AT2G47650 | 27.523 | 327 | 191 | 13 | 49 | 363 | 120 | 412 | 1.20e-15 | 78.6 |
MS.gene00065.t1 | AT2G28760 | 25.538 | 325 | 189 | 14 | 52 | 363 | 33 | 317 | 7.93e-15 | 75.5 |
MS.gene00065.t1 | AT2G28760 | 25.538 | 325 | 189 | 14 | 52 | 363 | 33 | 317 | 7.93e-15 | 75.5 |
MS.gene00065.t1 | AT2G28760 | 25.538 | 325 | 189 | 14 | 52 | 363 | 33 | 317 | 7.93e-15 | 75.5 |
MS.gene00065.t1 | AT2G28760 | 25.460 | 326 | 190 | 14 | 51 | 363 | 63 | 348 | 1.39e-14 | 75.1 |
MS.gene00065.t1 | AT3G53520 | 25.948 | 343 | 187 | 13 | 52 | 363 | 122 | 428 | 2.14e-13 | 72.0 |
MS.gene00065.t1 | AT5G59290 | 24.000 | 325 | 194 | 13 | 52 | 363 | 3 | 287 | 2.87e-13 | 70.5 |
MS.gene00065.t1 | AT3G46440 | 24.308 | 325 | 193 | 13 | 52 | 363 | 31 | 315 | 3.33e-13 | 70.5 |
MS.gene00065.t1 | AT3G46440 | 24.308 | 325 | 193 | 13 | 52 | 363 | 31 | 315 | 3.33e-13 | 70.5 |
MS.gene00065.t1 | AT5G59290 | 24.000 | 325 | 194 | 13 | 52 | 363 | 25 | 309 | 3.60e-13 | 70.5 |
MS.gene00065.t1 | AT5G59290 | 24.000 | 325 | 194 | 13 | 52 | 363 | 32 | 316 | 3.68e-13 | 70.5 |
MS.gene00065.t1 | AT5G59290 | 24.000 | 325 | 194 | 13 | 52 | 363 | 47 | 331 | 3.86e-13 | 70.5 |
MS.gene00065.t1 | AT3G53520 | 30.645 | 186 | 110 | 7 | 52 | 231 | 122 | 294 | 1.43e-12 | 68.9 |
Find 95 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAATCTGTCACGTGGAAATT+TGG | 0.163966 | 2.1:-59940748 | MS.gene00065:CDS |
TGTTCTGTTTCTTCTGTAAT+TGG | 0.175667 | 2.1:+59940076 | None:intergenic |
ATTAACAGCATTATGCATTT+TGG | 0.202310 | 2.1:-59941245 | MS.gene00065:CDS |
GATGTCTTCTGCCATCTTCT+TGG | 0.228530 | 2.1:+59939894 | None:intergenic |
GTTGCTACCTTGCAGGTTAC+AGG | 0.262560 | 2.1:-59938730 | MS.gene00065:intron |
CTTGTTGGTGTTGGAGTCTA+TGG | 0.271525 | 2.1:-59940167 | MS.gene00065:CDS |
AGAAGGTTCCCCTTCCTCTT+TGG | 0.279115 | 2.1:+59941292 | None:intergenic |
GTTTGTGAGTGCTTGTAAAA+AGG | 0.301144 | 2.1:-59938554 | MS.gene00065:CDS |
GCCTCACCTAATCTCCCTTC+AGG | 0.328567 | 2.1:+59939510 | None:intergenic |
TCCAGATATTTCAATGTGAT+TGG | 0.333892 | 2.1:-59939540 | MS.gene00065:intron |
AGATGGCAGTAATGATTCTA+AGG | 0.337776 | 2.1:-59939846 | MS.gene00065:intron |
TGTATAAATTGAAGCCTTCC+AGG | 0.337951 | 2.1:+59940690 | None:intergenic |
CGGTCTTATGCCTGGCTTGA+AGG | 0.347715 | 2.1:-59939427 | MS.gene00065:intron |
TAGGAACTTCCATAACCATT+AGG | 0.353013 | 2.1:+59938367 | None:intergenic |
GGCGCCAAGACCTGAGCTTC+GGG | 0.358747 | 2.1:-59939490 | MS.gene00065:CDS |
TAGAATCATTACTGCCATCT+TGG | 0.369999 | 2.1:+59939849 | None:intergenic |
AATCTGTCACGTGGAAATTT+GGG | 0.377291 | 2.1:-59940747 | MS.gene00065:CDS |
TCAAGTACATGTGCAACATA+TGG | 0.383124 | 2.1:-59940115 | MS.gene00065:CDS |
AGATCAGACGCGAACTGAAC+TGG | 0.384651 | 2.1:-59938453 | MS.gene00065:CDS |
GTGGAAATTTGGGTGCCGTC+AGG | 0.389040 | 2.1:-59940737 | MS.gene00065:CDS |
TACAATGTTGGCACTGGAAA+AGG | 0.389995 | 2.1:-59938592 | MS.gene00065:CDS |
TGGCAGAAAACTCGCCCTAA+TGG | 0.404078 | 2.1:-59938382 | MS.gene00065:CDS |
AAAACTCGCCCTAATGGTTA+TGG | 0.406101 | 2.1:-59938376 | MS.gene00065:CDS |
CATGGGTGACCCCAGGTTCA+TGG | 0.408868 | 2.1:+59940949 | None:intergenic |
ACAGGCGGTGCAGGCTATAT+CGG | 0.410666 | 2.1:-59940918 | MS.gene00065:CDS |
GCAGCTCGCGGTCTTATGCC+TGG | 0.412061 | 2.1:-59939435 | MS.gene00065:CDS |
CGGGAACATGGTCGAATCTC+AGG | 0.412089 | 2.1:-59939471 | MS.gene00065:CDS |
AGAGGAAGGGGAACCTTCTC+GGG | 0.414862 | 2.1:-59941288 | MS.gene00065:CDS |
GCATTCAAGTTGCATGGAAA+TGG | 0.417518 | 2.1:-59938402 | MS.gene00065:CDS |
CAAGTACATGTGCAACATAT+GGG | 0.418366 | 2.1:-59940114 | MS.gene00065:CDS |
CGTAATCGCCGGGTCGGCGT+GGG | 0.421140 | 2.1:+59938500 | None:intergenic |
AGGCGCCAAGACCTGAGCTT+CGG | 0.423305 | 2.1:-59939491 | MS.gene00065:CDS |
TTGTAGATGCCTACTTTAGC+AGG | 0.425630 | 2.1:+59938610 | None:intergenic |
CTTTGCAGCTGTTGCATATG+TGG | 0.425641 | 2.1:-59940491 | MS.gene00065:CDS |
AAGAGGAAGGGGAACCTTCT+CGG | 0.427697 | 2.1:-59941289 | MS.gene00065:CDS |
TGTTCCCGAAGCTCAGGTCT+TGG | 0.431938 | 2.1:+59939486 | None:intergenic |
GCTACGAGTACTTACTTAAG+AGG | 0.432049 | 2.1:+59940451 | None:intergenic |
ATCAAATACCTTGTTGGTGT+TGG | 0.436328 | 2.1:-59940176 | MS.gene00065:CDS |
TATTACATCAAATACCTTGT+TGG | 0.439822 | 2.1:-59940182 | MS.gene00065:CDS |
CTATAGGTTATTACCGGACT+AGG | 0.447127 | 2.1:+59941193 | None:intergenic |
AGGAACTTCCATAACCATTA+GGG | 0.453384 | 2.1:+59938368 | None:intergenic |
CAGAAACCCATCAACCCATA+TGG | 0.462557 | 2.1:-59939922 | MS.gene00065:CDS |
AGTTCGCGTCTGATCTTAGT+CGG | 0.469727 | 2.1:+59938460 | None:intergenic |
TGGAAAAGGTAGGTCAGTTA+AGG | 0.470945 | 2.1:-59938578 | MS.gene00065:CDS |
ATACACCTCGGCGTAATCGC+CGG | 0.470989 | 2.1:+59938489 | None:intergenic |
TCAGACCCTGAAGGGAGATT+AGG | 0.474227 | 2.1:-59939516 | MS.gene00065:CDS |
CGACCATGTTCCCGAAGCTC+AGG | 0.475626 | 2.1:+59939480 | None:intergenic |
TCTCGAATGCATGTTCCGTC+AGG | 0.484723 | 2.1:+59938691 | None:intergenic |
GCGTAATCGCCGGGTCGGCG+TGG | 0.492139 | 2.1:+59938499 | None:intergenic |
TCAATTTATACATGCTGACT+TGG | 0.497293 | 2.1:-59940679 | MS.gene00065:CDS |
CACCGCCTGTCACTAAAACA+TGG | 0.497909 | 2.1:+59940931 | None:intergenic |
TGGAAATTTGGGTGCCGTCA+GGG | 0.502636 | 2.1:-59940736 | MS.gene00065:CDS |
TACACCTCGGCGTAATCGCC+GGG | 0.503070 | 2.1:+59938490 | None:intergenic |
AAAAGAGCATTCAAGTTGCA+TGG | 0.503302 | 2.1:-59938408 | MS.gene00065:CDS |
AATTGAAGCCTTCCAGGCTG+TGG | 0.505432 | 2.1:+59940696 | None:intergenic |
CCTCACCTAATCTCCCTTCA+GGG | 0.505866 | 2.1:+59939511 | None:intergenic |
AATCGCCGGGTCGGCGTGGG+AGG | 0.507187 | 2.1:+59938503 | None:intergenic |
GGCATCTACAATGTTGGCAC+TGG | 0.509978 | 2.1:-59938598 | MS.gene00065:CDS |
CAAAGCTTATTTCCACAGCC+TGG | 0.514442 | 2.1:-59940708 | MS.gene00065:CDS |
GCTTATTTCCACAGCCTGGA+AGG | 0.517355 | 2.1:-59940704 | MS.gene00065:CDS |
CAATTTATACATGCTGACTT+GGG | 0.517817 | 2.1:-59940678 | MS.gene00065:CDS |
AAAGTAGGCATCTACAATGT+TGG | 0.534999 | 2.1:-59938604 | MS.gene00065:CDS |
CCATGTCAAAGCTCTTGAAA+AGG | 0.535022 | 2.1:-59938638 | MS.gene00065:CDS |
AGACCTGAGCTTCGGGAACA+TGG | 0.536889 | 2.1:-59939483 | MS.gene00065:CDS |
GACTTCCTCCCACGCCGACC+CGG | 0.539754 | 2.1:-59938508 | MS.gene00065:CDS |
TATTGAAATACCTTCAAGCC+AGG | 0.549755 | 2.1:+59939417 | None:intergenic |
AAGGCAAAACCTGCTAAAGT+AGG | 0.550752 | 2.1:-59938619 | MS.gene00065:CDS |
AGATTCTTTCAGAAGTCGTA+AGG | 0.553619 | 2.1:+59940884 | None:intergenic |
GGACTAGGAGTGGTAAAAGA+TGG | 0.555652 | 2.1:+59941208 | None:intergenic |
GTTCGCGTCTGATCTTAGTC+GGG | 0.560906 | 2.1:+59938461 | None:intergenic |
ATGTGGATCCAAAGAGGAAG+GGG | 0.563802 | 2.1:-59941300 | MS.gene00065:CDS |
AATTACAGAAGAAACAGAAC+AGG | 0.565287 | 2.1:-59940074 | MS.gene00065:intron |
TTTGCAGCTGTTGCATATGT+GGG | 0.570119 | 2.1:-59940490 | MS.gene00065:CDS |
ATATGGAAAAGCCAAGAAGA+TGG | 0.574141 | 2.1:-59939905 | MS.gene00065:CDS |
TTATGTGGATCCAAAGAGGA+AGG | 0.575624 | 2.1:-59941302 | MS.gene00065:CDS |
ACCGCCTGTCACTAAAACAT+GGG | 0.580269 | 2.1:+59940932 | None:intergenic |
ACTAAAACATGGGTGACCCC+AGG | 0.588648 | 2.1:+59940942 | None:intergenic |
CTACGAGTACTTACTTAAGA+GGG | 0.593376 | 2.1:+59940452 | None:intergenic |
GCGTGCTTTGATGCAGCTCG+CGG | 0.606051 | 2.1:-59939447 | MS.gene00065:CDS |
CCTCGGCGTAATCGCCGGGT+CGG | 0.614235 | 2.1:+59938494 | None:intergenic |
GTGATTGGATCAGACCCTGA+AGG | 0.618887 | 2.1:-59939525 | MS.gene00065:CDS |
TGATTGGATCAGACCCTGAA+GGG | 0.619541 | 2.1:-59939524 | MS.gene00065:CDS |
ATCTTATCGAGTTACCATAG+TGG | 0.621643 | 2.1:-59940865 | MS.gene00065:intron |
ACAGATTATAACACACCTGA+CGG | 0.628409 | 2.1:-59938706 | MS.gene00065:CDS |
TATGTGGATCCAAAGAGGAA+GGG | 0.629689 | 2.1:-59941301 | MS.gene00065:CDS |
GGTTATTACCGGACTAGGAG+TGG | 0.633999 | 2.1:+59941198 | None:intergenic |
CATAGACTCCAACACCAACA+AGG | 0.636337 | 2.1:+59940168 | None:intergenic |
CCCTGAAGGGAGATTAGGTG+AGG | 0.640331 | 2.1:-59939511 | MS.gene00065:CDS |
AAGTACATGTGCAACATATG+GGG | 0.646312 | 2.1:-59940113 | MS.gene00065:CDS |
TGGATTATGTGGATCCAAAG+AGG | 0.648120 | 2.1:-59941306 | MS.gene00065:CDS |
TTTCAGGATAATCTGTCACG+TGG | 0.666637 | 2.1:-59940756 | MS.gene00065:intron |
TAAGCTTTGAAGAACCCTGA+CGG | 0.700404 | 2.1:+59940722 | None:intergenic |
ATGTTGGCACTGGAAAAGGT+AGG | 0.713854 | 2.1:-59938588 | MS.gene00065:CDS |
CCGACCCGGCGATTACGCCG+AGG | 0.722521 | 2.1:-59938494 | MS.gene00065:CDS |
AGTCGGGTCGCTATACACCT+CGG | 0.765609 | 2.1:+59938477 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATCAATAAATTGAATAAAA+TGG | + | chr2.1:59938673-59938692 | None:intergenic | 10.0% |
!!! | TTTATTTTTTAGAATCATTT+TGG | - | chr2.1:59940077-59940096 | MS.gene00065:CDS | 10.0% |
!! | TAAAATGAAATTGTTTACAT+AGG | - | chr2.1:59940299-59940318 | MS.gene00065:intron | 15.0% |
!! | TATTAAGATTATCATTAGTT+TGG | + | chr2.1:59940436-59940455 | None:intergenic | 15.0% |
!!! | AATTATTGATAACTTTTCTT+TGG | - | chr2.1:59940104-59940123 | MS.gene00065:CDS | 15.0% |
!!! | ATTATTGATAACTTTTCTTT+GGG | - | chr2.1:59940105-59940124 | MS.gene00065:CDS | 15.0% |
!! | AAATGAAAACAAAAATGTGT+TGG | + | chr2.1:59939999-59940018 | None:intergenic | 20.0% |
!! | AAGTTTAAACACTTGATATT+TGG | - | chr2.1:59940486-59940505 | MS.gene00065:CDS | 20.0% |
!! | AATATATCTTACACCTATAA+TGG | - | chr2.1:59939940-59939959 | MS.gene00065:intron | 20.0% |
!! | AATCAAAATTTCTCTATTTC+AGG | - | chr2.1:59938901-59938920 | MS.gene00065:intron | 20.0% |
!! | CTTTAGTCAATATAATCTAT+AGG | + | chr2.1:59938499-59938518 | None:intergenic | 20.0% |
!! | TAAATAAAGTAGAACTGAAA+TGG | + | chr2.1:59939437-59939456 | None:intergenic | 20.0% |
!! | TATAATCTATAGGTTATTAC+CGG | + | chr2.1:59938489-59938508 | None:intergenic | 20.0% |
!!! | TGATAAAGTTGTATTTCTTT+TGG | - | chr2.1:59939271-59939290 | MS.gene00065:intron | 20.0% |
!!! | TGGAATTTTTTGAAAAATCA+AGG | + | chr2.1:59939807-59939826 | None:intergenic | 20.0% |
!!! | TTTCATTTTTCTTTTCTTTG+TGG | - | chr2.1:59940011-59940030 | MS.gene00065:intron | 20.0% |
!!! | TTTTTCAAAAAATTCCAAGA+TGG | - | chr2.1:59939810-59939829 | MS.gene00065:intron | 20.0% |
! | AAAACAGCTTATAGCATATA+TGG | + | chr2.1:59940685-59940704 | None:intergenic | 25.0% |
! | AAACTTATTCACATGTCAAT+AGG | + | chr2.1:59938600-59938619 | None:intergenic | 25.0% |
! | AATCATTGACATTATGTACT+TGG | - | chr2.1:59939724-59939743 | MS.gene00065:intron | 25.0% |
! | ACTTATTTGAGCTTATCTAT+TGG | + | chr2.1:59940789-59940808 | None:intergenic | 25.0% |
! | AGAAATACAACTTTATCAAC+TGG | + | chr2.1:59939269-59939288 | None:intergenic | 25.0% |
! | AGACAAATTGAAAAAGCTTA+TGG | + | chr2.1:59940752-59940771 | None:intergenic | 25.0% |
! | ATACAAGAATTGAAGTAACT+TGG | + | chr2.1:59940871-59940890 | None:intergenic | 25.0% |
! | ATTCAGATTCATTAAACGAA+AGG | + | chr2.1:59939923-59939942 | None:intergenic | 25.0% |
! | CCTTGTTACAGAAAATAATT+TGG | - | chr2.1:59939035-59939054 | MS.gene00065:intron | 25.0% |
! | GAAAGAACTACAAAAAACAT+GGG | + | chr2.1:59939883-59939902 | None:intergenic | 25.0% |
! | TACAAGAATTGAAGTAACTT+GGG | + | chr2.1:59940870-59940889 | None:intergenic | 25.0% |
! | TATTACATCAAATACCTTGT+TGG | - | chr2.1:59939491-59939510 | MS.gene00065:CDS | 25.0% |
! | TGAAAGAACTACAAAAAACA+TGG | + | chr2.1:59939884-59939903 | None:intergenic | 25.0% |
!! | AGTCAAGAAAACAAATTTTC+TGG | + | chr2.1:59939109-59939128 | None:intergenic | 25.0% |
!! | ATTAACAGCATTATGCATTT+TGG | - | chr2.1:59938428-59938447 | MS.gene00065:CDS | 25.0% |
!! | CCAAATTATTTTCTGTAACA+AGG | + | chr2.1:59939038-59939057 | None:intergenic | 25.0% |
!! | GATTTATATCTATTTCTTCC+AGG | + | chr2.1:59938578-59938597 | None:intergenic | 25.0% |
!! | GTCAAGAAAACAAATTTTCT+GGG | + | chr2.1:59939108-59939127 | None:intergenic | 25.0% |
!! | TCAAGAAAACAAATTTTCTG+GGG | + | chr2.1:59939107-59939126 | None:intergenic | 25.0% |
!!! | AGAAAATTTGTTTTCTTGAC+TGG | - | chr2.1:59939108-59939127 | MS.gene00065:intron | 25.0% |
!!! | ATTTTAAAGACATACCACTA+TGG | + | chr2.1:59938825-59938844 | None:intergenic | 25.0% |
AAAGGTAAATGCAAATGCAT+TGG | - | chr2.1:59938865-59938884 | MS.gene00065:intron | 30.0% | |
AATTACAGAAGAAACAGAAC+AGG | - | chr2.1:59939599-59939618 | MS.gene00065:intron | 30.0% | |
ATCATGTTAGTCCATATCTT+AGG | + | chr2.1:59940588-59940607 | None:intergenic | 30.0% | |
ATGATCTTGACACTTATCAT+AGG | - | chr2.1:59940603-59940622 | MS.gene00065:intron | 30.0% | |
CTTATAGCATATATGGAAAC+AGG | + | chr2.1:59940678-59940697 | None:intergenic | 30.0% | |
TATTTCCTTGCATAGAATCT+AGG | - | chr2.1:59940454-59940473 | MS.gene00065:intron | 30.0% | |
TCCAATCACATTGAAATATC+TGG | + | chr2.1:59940137-59940156 | None:intergenic | 30.0% | |
TCCAGATATTTCAATGTGAT+TGG | - | chr2.1:59940133-59940152 | MS.gene00065:CDS | 30.0% | |
TCTGGAAAATGCATATACTA+GGG | + | chr2.1:59940409-59940428 | None:intergenic | 30.0% | |
TGAAAACTTCTCTCTGATAA+AGG | - | chr2.1:59938847-59938866 | MS.gene00065:intron | 30.0% | |
TTGAAAAAGCTTATGGAAAC+AGG | + | chr2.1:59940745-59940764 | None:intergenic | 30.0% | |
! | TCAATTTATACATGCTGACT+TGG | - | chr2.1:59938994-59939013 | MS.gene00065:intron | 30.0% |
! | TGTTCTGTTTCTTCTGTAAT+TGG | + | chr2.1:59939600-59939619 | None:intergenic | 30.0% |
!! | AGTAACATGCTTGTTTTTCT+TGG | - | chr2.1:59940509-59940528 | MS.gene00065:CDS | 30.0% |
!! | CAATTTATACATGCTGACTT+GGG | - | chr2.1:59938995-59939014 | MS.gene00065:intron | 30.0% |
!! | TGTTTTCTTGACTGGTTATT+AGG | - | chr2.1:59939116-59939135 | MS.gene00065:intron | 30.0% |
!!! | AAATTTTGATTAGCACAGAC+TGG | + | chr2.1:59938892-59938911 | None:intergenic | 30.0% |
!!! | TGATTGATATCCTGCTTTTT+TGG | - | chr2.1:59938688-59938707 | MS.gene00065:CDS | 30.0% |
!!! | TTTTGTTTTTCGTTGCATCT+TGG | - | chr2.1:59939668-59939687 | MS.gene00065:intron | 30.0% |
AAAGTAGGCATCTACAATGT+TGG | - | chr2.1:59941069-59941088 | MS.gene00065:intron | 35.0% | |
AAGTACATGTGCAACATATG+GGG | - | chr2.1:59939560-59939579 | MS.gene00065:intron | 35.0% | |
AATCTGTCACGTGGAAATTT+GGG | - | chr2.1:59938926-59938945 | MS.gene00065:intron | 35.0% | |
ACAGATTATAACACACCTGA+CGG | - | chr2.1:59940967-59940986 | MS.gene00065:intron | 35.0% | |
AGATGGCAGTAATGATTCTA+AGG | - | chr2.1:59939827-59939846 | MS.gene00065:intron | 35.0% | |
AGATTCTTTCAGAAGTCGTA+AGG | + | chr2.1:59938792-59938811 | None:intergenic | 35.0% | |
AGGAACTTCCATAACCATTA+GGG | + | chr2.1:59941308-59941327 | None:intergenic | 35.0% | |
ATAAATATCAGAGTGAGACC+TGG | - | chr2.1:59938557-59938576 | MS.gene00065:CDS | 35.0% | |
ATATGGAAAAGCCAAGAAGA+TGG | - | chr2.1:59939768-59939787 | MS.gene00065:intron | 35.0% | |
ATCAAATACCTTGTTGGTGT+TGG | - | chr2.1:59939497-59939516 | MS.gene00065:CDS | 35.0% | |
ATCAGCAGATTAATGCTTGA+TGG | - | chr2.1:59938623-59938642 | MS.gene00065:CDS | 35.0% | |
ATCTTATCGAGTTACCATAG+TGG | - | chr2.1:59938808-59938827 | MS.gene00065:intron | 35.0% | |
CAAGTACATGTGCAACATAT+GGG | - | chr2.1:59939559-59939578 | MS.gene00065:intron | 35.0% | |
CAATTAATCTCCTAACAGGT+TGG | + | chr2.1:59940341-59940360 | None:intergenic | 35.0% | |
CACAATAACTAAACCACGAT+TGG | + | chr2.1:59939633-59939652 | None:intergenic | 35.0% | |
CATATCTTAGGCCTAAGATA+TGG | - | chr2.1:59940574-59940593 | MS.gene00065:intron | 35.0% | |
CATATCTTAGGCCTAAGATA+TGG | + | chr2.1:59940593-59940574 | None:intergenic | 35.0% | |
CCAACAATTAATCTCCTAAC+AGG | + | chr2.1:59940345-59940364 | None:intergenic | 35.0% | |
CCTGTTAGGAGATTAATTGT+TGG | - | chr2.1:59940342-59940361 | MS.gene00065:intron | 35.0% | |
CTAATCCTAGATTCTATGCA+AGG | + | chr2.1:59940462-59940481 | None:intergenic | 35.0% | |
CTACGAGTACTTACTTAAGA+GGG | + | chr2.1:59939224-59939243 | None:intergenic | 35.0% | |
CTCTTGTAAGGTTCCATTAT+AGG | + | chr2.1:59939956-59939975 | None:intergenic | 35.0% | |
GGAACGACTTTAATGAACAT+CGG | - | chr2.1:59939689-59939708 | MS.gene00065:intron | 35.0% | |
GTCTGGAAAATGCATATACT+AGG | + | chr2.1:59940410-59940429 | None:intergenic | 35.0% | |
GTTTGTGAGTGCTTGTAAAA+AGG | - | chr2.1:59941119-59941138 | MS.gene00065:intron | 35.0% | |
TAACCCTAAGTCCATATCTT+AGG | - | chr2.1:59940562-59940581 | MS.gene00065:intron | 35.0% | |
TAATCTGTCACGTGGAAATT+TGG | - | chr2.1:59938925-59938944 | MS.gene00065:intron | 35.0% | |
TAGAATCATTACTGCCATCT+TGG | + | chr2.1:59939827-59939846 | None:intergenic | 35.0% | |
TAGGAACTTCCATAACCATT+AGG | + | chr2.1:59941309-59941328 | None:intergenic | 35.0% | |
TATTGAAATACCTTCAAGCC+AGG | + | chr2.1:59940259-59940278 | None:intergenic | 35.0% | |
TCAAGTACATGTGCAACATA+TGG | - | chr2.1:59939558-59939577 | MS.gene00065:intron | 35.0% | |
TGTATAAATTGAAGCCTTCC+AGG | + | chr2.1:59938986-59939005 | None:intergenic | 35.0% | |
! | CAACTTGAATGCTCTTTTCA+AGG | + | chr2.1:59941263-59941282 | None:intergenic | 35.0% |
! | CATAGGTTCATTTTACATCG+CGG | + | chr2.1:59940911-59940930 | None:intergenic | 35.0% |
! | CTATAATGGAACCTTACAAG+AGG | - | chr2.1:59939954-59939973 | MS.gene00065:intron | 35.0% |
! | GATTAATGCTTGATGGTTAG+AGG | - | chr2.1:59938630-59938649 | MS.gene00065:CDS | 35.0% |
! | TATCATTAGTTTGGTGAGTC+TGG | + | chr2.1:59940427-59940446 | None:intergenic | 35.0% |
! | TCTGTAATTGGCATCTTTTC+AGG | + | chr2.1:59939588-59939607 | None:intergenic | 35.0% |
!! | AAAAGAGCATTCAAGTTGCA+TGG | - | chr2.1:59941265-59941284 | MS.gene00065:CDS | 35.0% |
!! | ATCTTCTTGGCTTTTCCATA+TGG | + | chr2.1:59939769-59939788 | None:intergenic | 35.0% |
!! | CTTTTCAAGAGCTTTGACAT+GGG | + | chr2.1:59941037-59941056 | None:intergenic | 35.0% |
!! | TCTTCTTGGCTTTTCCATAT+GGG | + | chr2.1:59939768-59939787 | None:intergenic | 35.0% |
!! | TGTTCTGTAACTTGTTTGTC+AGG | - | chr2.1:59939457-59939476 | MS.gene00065:CDS | 35.0% |
!!! | ATGTTTTTTACTAGCTCTCG+TGG | - | chr2.1:59940824-59940843 | MS.gene00065:intron | 35.0% |
!!! | GCTTTTTCAATTTGTCTCAC+AGG | - | chr2.1:59940755-59940774 | MS.gene00065:intron | 35.0% |
AAAACTCGCCCTAATGGTTA+TGG | - | chr2.1:59941297-59941316 | MS.gene00065:CDS | 40.0% | |
AACCAAACTCCAGATTACCA+GGG | + | chr2.1:59939328-59939347 | None:intergenic | 40.0% | |
AAGCTATCCTTGAGAGCTTA+TGG | - | chr2.1:59940708-59940727 | MS.gene00065:CDS | 40.0% | |
AAGGCAAAACCTGCTAAAGT+AGG | - | chr2.1:59941054-59941073 | MS.gene00065:intron | 40.0% | |
AGGCCTAAGATATGGACTTA+GGG | + | chr2.1:59940568-59940587 | None:intergenic | 40.0% | |
AGGTAATTGAAGTCTGGTCA+AGG | - | chr2.1:59939351-59939370 | MS.gene00065:intron | 40.0% | |
AGTGCTTGTAAAAAGGCTAC+AGG | - | chr2.1:59941126-59941145 | MS.gene00065:intron | 40.0% | |
CAAGAAAAACTTTCCCGAGA+AGG | + | chr2.1:59938401-59938420 | None:intergenic | 40.0% | |
CCATGTCAAAGCTCTTGAAA+AGG | - | chr2.1:59941035-59941054 | MS.gene00065:intron | 40.0% | |
CTATAGGTTATTACCGGACT+AGG | + | chr2.1:59938483-59938502 | None:intergenic | 40.0% | |
GAAAACTGGACCAAAAAAGC+AGG | + | chr2.1:59938701-59938720 | None:intergenic | 40.0% | |
GCTACGAGTACTTACTTAAG+AGG | + | chr2.1:59939225-59939244 | None:intergenic | 40.0% | |
GTCAGAAAAACCAACCTGTT+AGG | - | chr2.1:59940328-59940347 | MS.gene00065:intron | 40.0% | |
TAGGCCTAAGATATGGACTT+AGG | + | chr2.1:59940569-59940588 | None:intergenic | 40.0% | |
TATGTGGATCCAAAGAGGAA+GGG | - | chr2.1:59938372-59938391 | MS.gene00065:CDS | 40.0% | |
TGGAAAAGGTAGGTCAGTTA+AGG | - | chr2.1:59941095-59941114 | MS.gene00065:intron | 40.0% | |
TGGATTATGTGGATCCAAAG+AGG | - | chr2.1:59938367-59938386 | MS.gene00065:CDS | 40.0% | |
TGTTCCAATCAGGATTCGAA+CGG | - | chr2.1:59939376-59939395 | MS.gene00065:intron | 40.0% | |
TTATGTGGATCCAAAGAGGA+AGG | - | chr2.1:59938371-59938390 | MS.gene00065:CDS | 40.0% | |
TTGTAGATGCCTACTTTAGC+AGG | + | chr2.1:59941066-59941085 | None:intergenic | 40.0% | |
TTTCAGGATAATCTGTCACG+TGG | - | chr2.1:59938917-59938936 | MS.gene00065:intron | 40.0% | |
TTTGCAGCTGTTGCATATGT+GGG | - | chr2.1:59939183-59939202 | MS.gene00065:intron | 40.0% | |
! | AGTTTTCTGTCCATGAACCT+GGG | - | chr2.1:59938714-59938733 | MS.gene00065:CDS | 40.0% |
! | ATCTTTTACCACTCCTAGTC+CGG | - | chr2.1:59938467-59938486 | MS.gene00065:CDS | 40.0% |
! | TACAATGTTGGCACTGGAAA+AGG | - | chr2.1:59941081-59941100 | MS.gene00065:intron | 40.0% |
! | TGGTAATCTGGAGTTTGGTT+GGG | - | chr2.1:59939328-59939347 | MS.gene00065:intron | 40.0% |
! | TGTGTTGGACTTTTGAACCA+TGG | + | chr2.1:59939984-59940003 | None:intergenic | 40.0% |
!! | CCTTTTCAAGAGCTTTGACA+TGG | + | chr2.1:59941038-59941057 | None:intergenic | 40.0% |
!! | GCATTCAAGTTGCATGGAAA+TGG | - | chr2.1:59941271-59941290 | MS.gene00065:CDS | 40.0% |
!! | TAAGCTTTGAAGAACCCTGA+CGG | + | chr2.1:59938954-59938973 | None:intergenic | 40.0% |
!!! | GCTTTTCCATATGGGTTGAT+GGG | + | chr2.1:59939760-59939779 | None:intergenic | 40.0% |
!!! | TTCTTTTGGCCTTAATCCTC+CGG | - | chr2.1:59939285-59939304 | MS.gene00065:intron | 40.0% |
ACCGCCTGTCACTAAAACAT+GGG | + | chr2.1:59938744-59938763 | None:intergenic | 45.0% | |
AGTTCGCGTCTGATCTTAGT+CGG | + | chr2.1:59941216-59941235 | None:intergenic | 45.0% | |
ATCTGTTCCTGTAACCTGCA+AGG | + | chr2.1:59940953-59940972 | None:intergenic | 45.0% | |
ATGTGGATCCAAAGAGGAAG+GGG | - | chr2.1:59938373-59938392 | MS.gene00065:CDS | 45.0% | |
CAAAGCTTATTTCCACAGCC+TGG | - | chr2.1:59938965-59938984 | MS.gene00065:intron | 45.0% | |
CAACCAAACTCCAGATTACC+AGG | + | chr2.1:59939329-59939348 | None:intergenic | 45.0% | |
CAGAAACCCATCAACCCATA+TGG | - | chr2.1:59939751-59939770 | MS.gene00065:intron | 45.0% | |
CAGGTTCATGGACAGAAAAC+TGG | + | chr2.1:59938715-59938734 | None:intergenic | 45.0% | |
CATAGACTCCAACACCAACA+AGG | + | chr2.1:59939508-59939527 | None:intergenic | 45.0% | |
CTTAATCCTCCGGTTCTCAA+GGG | - | chr2.1:59939295-59939314 | MS.gene00065:intron | 45.0% | |
CTTTGCAGCTGTTGCATATG+TGG | - | chr2.1:59939182-59939201 | MS.gene00065:intron | 45.0% | |
GACATGTCCATAAGCTCTCA+AGG | + | chr2.1:59940718-59940737 | None:intergenic | 45.0% | |
GATGTCTTCTGCCATCTTCT+TGG | + | chr2.1:59939782-59939801 | None:intergenic | 45.0% | |
GCAACAGATGCAATGAGCAT+AGG | + | chr2.1:59940928-59940947 | None:intergenic | 45.0% | |
GCTCTCTGTCACAGTAATCT+TGG | + | chr2.1:59940387-59940406 | None:intergenic | 45.0% | |
GGACTAGGAGTGGTAAAAGA+TGG | + | chr2.1:59938468-59938487 | None:intergenic | 45.0% | |
GGTCAAGGATTGTTCCAATC+AGG | - | chr2.1:59939366-59939385 | MS.gene00065:intron | 45.0% | |
GTTCCAATCAGGATTCGAAC+GGG | - | chr2.1:59939377-59939396 | MS.gene00065:intron | 45.0% | |
GTTGGGAGGTAATTGAAGTC+TGG | - | chr2.1:59939345-59939364 | MS.gene00065:intron | 45.0% | |
TAACCCGTTCGAATCCTGAT+TGG | + | chr2.1:59939383-59939402 | None:intergenic | 45.0% | |
TGATTGGATCAGACCCTGAA+GGG | - | chr2.1:59940149-59940168 | MS.gene00065:CDS | 45.0% | |
! | ATGTTGGCACTGGAAAAGGT+AGG | - | chr2.1:59941085-59941104 | MS.gene00065:intron | 45.0% |
! | CAGTTTTCTGTCCATGAACC+TGG | - | chr2.1:59938713-59938732 | MS.gene00065:CDS | 45.0% |
! | CTGGTAATCTGGAGTTTGGT+TGG | - | chr2.1:59939327-59939346 | MS.gene00065:intron | 45.0% |
! | GTTTTCTGTCCATGAACCTG+GGG | - | chr2.1:59938715-59938734 | MS.gene00065:CDS | 45.0% |
! | TAATCTGGAGTTTGGTTGGG+AGG | - | chr2.1:59939331-59939350 | MS.gene00065:intron | 45.0% |
!! | CTTGTTGGTGTTGGAGTCTA+TGG | - | chr2.1:59939506-59939525 | MS.gene00065:CDS | 45.0% |
!! | GGCTTTTCCATATGGGTTGA+TGG | + | chr2.1:59939761-59939780 | None:intergenic | 45.0% |
!!! | ACCCATGTTTTAGTGACAGG+CGG | - | chr2.1:59938740-59938759 | MS.gene00065:intron | 45.0% |
!!! | GTCACCCATGTTTTAGTGAC+AGG | - | chr2.1:59938737-59938756 | MS.gene00065:intron | 45.0% |
AAGAGGAAGGGGAACCTTCT+CGG | - | chr2.1:59938384-59938403 | MS.gene00065:CDS | 50.0% | |
AATTGAAGCCTTCCAGGCTG+TGG | + | chr2.1:59938980-59938999 | None:intergenic | 50.0% | |
ACAGGTGCGAAATCCAATCG+TGG | - | chr2.1:59939617-59939636 | MS.gene00065:intron | 50.0% | |
ACCATGGCACACCTCTTGTA+AGG | + | chr2.1:59939968-59939987 | None:intergenic | 50.0% | |
ACTAAAACATGGGTGACCCC+AGG | + | chr2.1:59938734-59938753 | None:intergenic | 50.0% | |
AGAAGGTTCCCCTTCCTCTT+TGG | + | chr2.1:59938384-59938403 | None:intergenic | 50.0% | |
AGATCAGACGCGAACTGAAC+TGG | - | chr2.1:59941220-59941239 | MS.gene00065:CDS | 50.0% | |
CACCGCCTGTCACTAAAACA+TGG | + | chr2.1:59938745-59938764 | None:intergenic | 50.0% | |
CCTCACCTAATCTCCCTTCA+GGG | + | chr2.1:59940165-59940184 | None:intergenic | 50.0% | |
CCTTAATCCTCCGGTTCTCA+AGG | - | chr2.1:59939294-59939313 | MS.gene00065:intron | 50.0% | |
CCTTGAGAACCGGAGGATTA+AGG | + | chr2.1:59939297-59939316 | None:intergenic | 50.0% | |
GCTTATTTCCACAGCCTGGA+AGG | - | chr2.1:59938969-59938988 | MS.gene00065:intron | 50.0% | |
GGCATCTACAATGTTGGCAC+TGG | - | chr2.1:59941075-59941094 | MS.gene00065:intron | 50.0% | |
GTGATTGGATCAGACCCTGA+AGG | - | chr2.1:59940148-59940167 | MS.gene00065:CDS | 50.0% | |
GTTCGCGTCTGATCTTAGTC+GGG | + | chr2.1:59941215-59941234 | None:intergenic | 50.0% | |
GTTGCTACCTTGCAGGTTAC+AGG | - | chr2.1:59940943-59940962 | MS.gene00065:CDS | 50.0% | |
TCAGACCCTGAAGGGAGATT+AGG | - | chr2.1:59940157-59940176 | MS.gene00065:CDS | 50.0% | |
TCTCGAATGCATGTTCCGTC+AGG | + | chr2.1:59940985-59941004 | None:intergenic | 50.0% | |
TGCATCTGTTGCTACCTTGC+AGG | - | chr2.1:59940936-59940955 | MS.gene00065:CDS | 50.0% | |
TGGCAGAAAACTCGCCCTAA+TGG | - | chr2.1:59941291-59941310 | MS.gene00065:CDS | 50.0% | |
! | ACCTTACAAGAGGTGTGCCA+TGG | - | chr2.1:59939964-59939983 | MS.gene00065:intron | 50.0% |
! | GACCCTGGTAATCTGGAGTT+TGG | - | chr2.1:59939323-59939342 | MS.gene00065:intron | 50.0% |
! | GGTTATTACCGGACTAGGAG+TGG | + | chr2.1:59938478-59938497 | None:intergenic | 50.0% |
! | TGGAAATTTGGGTGCCGTCA+GGG | - | chr2.1:59938937-59938956 | MS.gene00065:intron | 50.0% |
ACAGGCGGTGCAGGCTATAT+CGG | - | chr2.1:59938755-59938774 | MS.gene00065:intron | 55.0% | |
AGACCTGAGCTTCGGGAACA+TGG | - | chr2.1:59940190-59940209 | MS.gene00065:CDS | 55.0% | |
AGAGGAAGGGGAACCTTCTC+GGG | - | chr2.1:59938385-59938404 | MS.gene00065:CDS | 55.0% | |
AGTCGGGTCGCTATACACCT+CGG | + | chr2.1:59941199-59941218 | None:intergenic | 55.0% | |
ATACACCTCGGCGTAATCGC+CGG | + | chr2.1:59941187-59941206 | None:intergenic | 55.0% | |
ATCCTCCGGTTCTCAAGGGA+AGG | - | chr2.1:59939299-59939318 | MS.gene00065:intron | 55.0% | |
CCCTGAAGGGAGATTAGGTG+AGG | - | chr2.1:59940162-59940181 | MS.gene00065:CDS | 55.0% | |
CGGGAACATGGTCGAATCTC+AGG | - | chr2.1:59940202-59940221 | MS.gene00065:intron | 55.0% | |
GCCTCACCTAATCTCCCTTC+AGG | + | chr2.1:59940166-59940185 | None:intergenic | 55.0% | |
TCCTCCGGTTCTCAAGGGAA+GGG | - | chr2.1:59939300-59939319 | MS.gene00065:intron | 55.0% | |
TGTTCCCGAAGCTCAGGTCT+TGG | + | chr2.1:59940190-59940209 | None:intergenic | 55.0% | |
! | CGGTCTTATGCCTGGCTTGA+AGG | - | chr2.1:59940246-59940265 | MS.gene00065:intron | 55.0% |
! | GTGGAAATTTGGGTGCCGTC+AGG | - | chr2.1:59938936-59938955 | MS.gene00065:intron | 55.0% |
!! | GTTTTAGTGACAGGCGGTGC+AGG | - | chr2.1:59938746-59938765 | MS.gene00065:intron | 55.0% |
AGGCGCCAAGACCTGAGCTT+CGG | - | chr2.1:59940182-59940201 | MS.gene00065:CDS | 60.0% | |
CATGGGTGACCCCAGGTTCA+TGG | + | chr2.1:59938727-59938746 | None:intergenic | 60.0% | |
CCTCCGGTTCTCAAGGGAAG+GGG | - | chr2.1:59939301-59939320 | MS.gene00065:intron | 60.0% | |
CGACCATGTTCCCGAAGCTC+AGG | + | chr2.1:59940196-59940215 | None:intergenic | 60.0% | |
GCGTGCTTTGATGCAGCTCG+CGG | - | chr2.1:59940226-59940245 | MS.gene00065:intron | 60.0% | |
GGAAGGGGACCCTGGTAATC+TGG | - | chr2.1:59939316-59939335 | MS.gene00065:intron | 60.0% | |
GGTCCCCTTCCCTTGAGAAC+CGG | + | chr2.1:59939307-59939326 | None:intergenic | 60.0% | |
TACACCTCGGCGTAATCGCC+GGG | + | chr2.1:59941186-59941205 | None:intergenic | 60.0% | |
TTCTCAAGGGAAGGGGACCC+TGG | - | chr2.1:59939308-59939327 | MS.gene00065:intron | 60.0% | |
CCCCTTCCCTTGAGAACCGG+AGG | + | chr2.1:59939304-59939323 | None:intergenic | 65.0% | |
GGCGCCAAGACCTGAGCTTC+GGG | - | chr2.1:59940183-59940202 | MS.gene00065:CDS | 65.0% | |
! | GCAGCTCGCGGTCTTATGCC+TGG | - | chr2.1:59940238-59940257 | MS.gene00065:intron | 65.0% |
CCTCGGCGTAATCGCCGGGT+CGG | + | chr2.1:59941182-59941201 | None:intergenic | 70.0% | |
CGTAATCGCCGGGTCGGCGT+GGG | + | chr2.1:59941176-59941195 | None:intergenic | 70.0% | |
GACTTCCTCCCACGCCGACC+CGG | - | chr2.1:59941165-59941184 | MS.gene00065:intron | 70.0% | |
AATCGCCGGGTCGGCGTGGG+AGG | + | chr2.1:59941173-59941192 | None:intergenic | 75.0% | |
CCGACCCGGCGATTACGCCG+AGG | - | chr2.1:59941179-59941198 | MS.gene00065:intron | 75.0% | |
GCGTAATCGCCGGGTCGGCG+TGG | + | chr2.1:59941177-59941196 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 59938366 | 59941329 | 59938366 | ID=MS.gene00065 |
chr2.1 | mRNA | 59938366 | 59941329 | 59938366 | ID=MS.gene00065.t1;Parent=MS.gene00065 |
chr2.1 | exon | 59941207 | 59941329 | 59941207 | ID=MS.gene00065.t1.exon1;Parent=MS.gene00065.t1 |
chr2.1 | CDS | 59941207 | 59941329 | 59941207 | ID=cds.MS.gene00065.t1;Parent=MS.gene00065.t1 |
chr2.1 | exon | 59940866 | 59940979 | 59940866 | ID=MS.gene00065.t1.exon2;Parent=MS.gene00065.t1 |
chr2.1 | CDS | 59940866 | 59940979 | 59940866 | ID=cds.MS.gene00065.t1;Parent=MS.gene00065.t1 |
chr2.1 | exon | 59940665 | 59940772 | 59940665 | ID=MS.gene00065.t1.exon3;Parent=MS.gene00065.t1 |
chr2.1 | CDS | 59940665 | 59940772 | 59940665 | ID=cds.MS.gene00065.t1;Parent=MS.gene00065.t1 |
chr2.1 | exon | 59940466 | 59940557 | 59940466 | ID=MS.gene00065.t1.exon4;Parent=MS.gene00065.t1 |
chr2.1 | CDS | 59940466 | 59940557 | 59940466 | ID=cds.MS.gene00065.t1;Parent=MS.gene00065.t1 |
chr2.1 | exon | 59940075 | 59940216 | 59940075 | ID=MS.gene00065.t1.exon5;Parent=MS.gene00065.t1 |
chr2.1 | CDS | 59940075 | 59940216 | 59940075 | ID=cds.MS.gene00065.t1;Parent=MS.gene00065.t1 |
chr2.1 | exon | 59939847 | 59939941 | 59939847 | ID=MS.gene00065.t1.exon6;Parent=MS.gene00065.t1 |
chr2.1 | CDS | 59939847 | 59939941 | 59939847 | ID=cds.MS.gene00065.t1;Parent=MS.gene00065.t1 |
chr2.1 | exon | 59939428 | 59939557 | 59939428 | ID=MS.gene00065.t1.exon7;Parent=MS.gene00065.t1 |
chr2.1 | CDS | 59939428 | 59939557 | 59939428 | ID=cds.MS.gene00065.t1;Parent=MS.gene00065.t1 |
chr2.1 | exon | 59938366 | 59938737 | 59938366 | ID=MS.gene00065.t1.exon8;Parent=MS.gene00065.t1 |
chr2.1 | CDS | 59938366 | 59938737 | 59938366 | ID=cds.MS.gene00065.t1;Parent=MS.gene00065.t1 |
Gene Sequence |
Protein sequence |