Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22302.t1 | XP_003610981.1 | 97.4 | 392 | 10 | 0 | 1 | 392 | 1 | 392 | 1.10E-219 | 772.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22302.t1 | O65781 | 86.2 | 348 | 47 | 1 | 46 | 392 | 3 | 350 | 3.0e-178 | 625.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22302.t1 | G7K9B4 | 97.4 | 392 | 10 | 0 | 1 | 392 | 1 | 392 | 7.7e-220 | 772.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053575 | MS.gene22302 | 0.819274 | 1.27E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene22302 | 0.806893 | 6.59E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22302 | MS.gene72188 | PPI |
| MS.gene22302 | MS.gene030443 | PPI |
| MS.gene22302 | MS.gene041727 | PPI |
| MS.gene22302 | MS.gene55805 | PPI |
| MS.gene22302 | MS.gene31166 | PPI |
| MS.gene024690 | MS.gene22302 | PPI |
| MS.gene22302 | MS.gene021092 | PPI |
| MS.gene22302 | MS.gene000931 | PPI |
| MS.gene22302 | MS.gene052130 | PPI |
| MS.gene22302 | MS.gene024691 | PPI |
| MS.gene22302 | MS.gene06078 | PPI |
| MS.gene22302 | MS.gene30948 | PPI |
| MS.gene22302 | MS.gene00065 | PPI |
| MS.gene22302 | MS.gene45481 | PPI |
| MS.gene21669 | MS.gene22302 | PPI |
| MS.gene22302 | MS.gene33973 | PPI |
| MS.gene55805 | MS.gene22302 | PPI |
| MS.gene069594 | MS.gene22302 | PPI |
| MS.gene22302 | MS.gene55903 | PPI |
| MS.gene22301 | MS.gene22302 | PPI |
| MS.gene048934 | MS.gene22302 | PPI |
| MS.gene22302 | MS.gene60814 | PPI |
| MS.gene22302 | MS.gene61100 | PPI |
| MS.gene22302 | MS.gene41197 | PPI |
| MS.gene22302 | MS.gene006028 | PPI |
| MS.gene22302 | MS.gene21670 | PPI |
| MS.gene22302 | MS.gene058332 | PPI |
| MS.gene22302 | MS.gene67882 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22302.t1 | MTR_5g009170 | 97.449 | 392 | 10 | 0 | 1 | 392 | 1 | 392 | 0.0 | 796 |
| MS.gene22302.t1 | MTR_5g009160 | 92.219 | 347 | 27 | 0 | 46 | 392 | 3 | 349 | 0.0 | 681 |
| MS.gene22302.t1 | MTR_8g099535 | 83.140 | 344 | 58 | 0 | 46 | 389 | 3 | 346 | 0.0 | 616 |
| MS.gene22302.t1 | MTR_5g009160 | 91.636 | 275 | 23 | 0 | 118 | 392 | 12 | 286 | 0.0 | 541 |
| MS.gene22302.t1 | MTR_4g134490 | 66.279 | 344 | 114 | 2 | 44 | 385 | 22 | 365 | 2.81e-173 | 488 |
| MS.gene22302.t1 | MTR_8g096880 | 66.286 | 350 | 115 | 3 | 42 | 388 | 1 | 350 | 4.15e-173 | 487 |
| MS.gene22302.t1 | MTR_4g134490 | 65.143 | 350 | 114 | 3 | 44 | 385 | 22 | 371 | 2.00e-170 | 481 |
| MS.gene22302.t1 | MTR_8g096880 | 65.635 | 323 | 109 | 2 | 42 | 362 | 1 | 323 | 3.32e-155 | 440 |
| MS.gene22302.t1 | MTR_5g009160 | 90.278 | 216 | 21 | 0 | 118 | 333 | 12 | 227 | 3.41e-147 | 416 |
| MS.gene22302.t1 | MTR_8g096880 | 65.306 | 294 | 100 | 2 | 42 | 333 | 1 | 294 | 6.80e-140 | 401 |
| MS.gene22302.t1 | MTR_8g089180 | 42.614 | 352 | 180 | 6 | 49 | 389 | 73 | 413 | 4.27e-85 | 265 |
| MS.gene22302.t1 | MTR_8g089180 | 42.614 | 352 | 180 | 6 | 49 | 389 | 73 | 413 | 4.27e-85 | 265 |
| MS.gene22302.t1 | MTR_2g032100 | 42.486 | 346 | 185 | 6 | 49 | 387 | 73 | 411 | 2.53e-83 | 260 |
| MS.gene22302.t1 | MTR_2g032100 | 43.005 | 193 | 108 | 2 | 49 | 241 | 73 | 263 | 4.99e-45 | 157 |
| MS.gene22302.t1 | MTR_8g099285 | 85.185 | 54 | 8 | 0 | 278 | 331 | 3 | 56 | 3.19e-25 | 97.4 |
| MS.gene22302.t1 | MTR_1g009600 | 28.732 | 355 | 212 | 14 | 43 | 386 | 1 | 325 | 8.70e-23 | 100 |
| MS.gene22302.t1 | MTR_0034s0060 | 27.642 | 369 | 224 | 15 | 29 | 386 | 121 | 457 | 6.04e-22 | 98.6 |
| MS.gene22302.t1 | MTR_4g102270 | 27.701 | 361 | 217 | 13 | 35 | 377 | 85 | 419 | 1.35e-21 | 96.3 |
| MS.gene22302.t1 | MTR_0354s0040 | 26.263 | 396 | 240 | 14 | 14 | 379 | 41 | 414 | 8.82e-21 | 94.0 |
| MS.gene22302.t1 | MTR_4g129820 | 27.119 | 354 | 223 | 13 | 48 | 386 | 96 | 429 | 2.40e-20 | 92.4 |
| MS.gene22302.t1 | MTR_4g024600 | 26.316 | 361 | 229 | 12 | 38 | 379 | 91 | 433 | 5.43e-20 | 91.7 |
| MS.gene22302.t1 | MTR_2g073240 | 26.781 | 351 | 216 | 14 | 47 | 386 | 19 | 339 | 8.91e-20 | 91.7 |
| MS.gene22302.t1 | MTR_3g084090 | 26.377 | 345 | 220 | 12 | 48 | 377 | 100 | 425 | 2.89e-18 | 86.7 |
| MS.gene22302.t1 | MTR_5g011940 | 25.000 | 348 | 221 | 12 | 48 | 377 | 91 | 416 | 5.52e-18 | 85.5 |
| MS.gene22302.t1 | MTR_4g120030 | 25.749 | 334 | 196 | 16 | 45 | 369 | 109 | 399 | 4.89e-13 | 70.5 |
| MS.gene22302.t1 | MTR_4g063600 | 25.469 | 373 | 215 | 14 | 8 | 369 | 6 | 326 | 1.62e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22302.t1 | AT4G10960 | 81.792 | 346 | 61 | 1 | 42 | 387 | 1 | 344 | 0.0 | 600 |
| MS.gene22302.t1 | AT1G64440 | 77.907 | 344 | 75 | 1 | 49 | 391 | 5 | 348 | 0.0 | 581 |
| MS.gene22302.t1 | AT4G23920 | 80.060 | 336 | 67 | 0 | 47 | 382 | 3 | 338 | 0.0 | 579 |
| MS.gene22302.t1 | AT1G63180 | 66.862 | 341 | 111 | 2 | 47 | 385 | 7 | 347 | 6.06e-173 | 486 |
| MS.gene22302.t1 | AT1G12780 | 65.689 | 341 | 115 | 2 | 47 | 385 | 7 | 347 | 5.76e-170 | 479 |
| MS.gene22302.t1 | AT1G63180 | 64.746 | 295 | 101 | 3 | 47 | 338 | 7 | 301 | 1.80e-139 | 400 |
| MS.gene22302.t1 | AT1G30620 | 41.711 | 374 | 200 | 7 | 29 | 391 | 49 | 415 | 1.58e-86 | 269 |
| MS.gene22302.t1 | AT1G30620 | 41.711 | 374 | 200 | 7 | 29 | 391 | 49 | 415 | 1.58e-86 | 269 |
| MS.gene22302.t1 | AT1G30620 | 41.711 | 374 | 200 | 7 | 29 | 391 | 49 | 415 | 1.58e-86 | 269 |
| MS.gene22302.t1 | AT1G30620 | 41.711 | 374 | 200 | 7 | 29 | 391 | 49 | 415 | 1.58e-86 | 269 |
| MS.gene22302.t1 | AT1G30620 | 43.714 | 350 | 183 | 6 | 49 | 391 | 72 | 414 | 3.19e-86 | 268 |
| MS.gene22302.t1 | AT5G44480 | 41.429 | 350 | 183 | 6 | 49 | 387 | 73 | 411 | 3.14e-83 | 260 |
| MS.gene22302.t1 | AT5G44480 | 41.429 | 350 | 183 | 6 | 49 | 387 | 73 | 411 | 3.14e-83 | 260 |
| MS.gene22302.t1 | AT5G44480 | 41.429 | 350 | 183 | 6 | 49 | 387 | 73 | 411 | 3.14e-83 | 260 |
| MS.gene22302.t1 | AT5G44480 | 41.429 | 350 | 183 | 6 | 49 | 387 | 97 | 435 | 7.80e-83 | 260 |
| MS.gene22302.t1 | AT4G20460 | 42.775 | 346 | 184 | 6 | 49 | 387 | 72 | 410 | 1.82e-82 | 258 |
| MS.gene22302.t1 | AT1G30620 | 43.779 | 217 | 116 | 3 | 29 | 241 | 49 | 263 | 3.02e-52 | 176 |
| MS.gene22302.t1 | AT2G34850 | 41.702 | 235 | 124 | 5 | 160 | 387 | 1 | 229 | 2.11e-51 | 172 |
| MS.gene22302.t1 | AT2G34850 | 41.702 | 235 | 124 | 5 | 160 | 387 | 1 | 229 | 2.11e-51 | 172 |
| MS.gene22302.t1 | AT2G34850 | 41.702 | 235 | 124 | 5 | 160 | 387 | 1 | 229 | 2.11e-51 | 172 |
| MS.gene22302.t1 | AT2G34850 | 41.702 | 235 | 124 | 5 | 160 | 387 | 1 | 229 | 2.11e-51 | 172 |
| MS.gene22302.t1 | AT1G53500 | 27.066 | 351 | 215 | 14 | 47 | 386 | 9 | 329 | 4.39e-23 | 101 |
| MS.gene22302.t1 | AT4G00110 | 28.116 | 345 | 205 | 13 | 38 | 362 | 81 | 402 | 2.29e-22 | 98.6 |
| MS.gene22302.t1 | AT1G02000 | 27.536 | 345 | 207 | 13 | 38 | 362 | 82 | 403 | 1.75e-21 | 95.9 |
| MS.gene22302.t1 | AT2G45310 | 26.648 | 349 | 214 | 12 | 48 | 377 | 98 | 423 | 1.98e-21 | 95.9 |
| MS.gene22302.t1 | AT3G14790 | 26.781 | 351 | 216 | 13 | 47 | 386 | 10 | 330 | 2.00e-20 | 94.0 |
| MS.gene22302.t1 | AT3G14790 | 26.781 | 351 | 216 | 13 | 47 | 386 | 7 | 327 | 2.06e-20 | 93.6 |
| MS.gene22302.t1 | AT1G78570 | 26.781 | 351 | 216 | 14 | 47 | 386 | 7 | 327 | 2.45e-20 | 93.6 |
| MS.gene22302.t1 | AT3G23820 | 26.957 | 345 | 218 | 11 | 48 | 377 | 113 | 438 | 5.89e-19 | 88.6 |
| MS.gene22302.t1 | AT4G12250 | 26.513 | 347 | 217 | 11 | 48 | 377 | 97 | 422 | 7.30e-18 | 85.5 |
| MS.gene22302.t1 | AT2G47650 | 26.720 | 378 | 220 | 18 | 12 | 373 | 86 | 422 | 4.76e-16 | 79.7 |
| MS.gene22302.t1 | AT2G47650 | 27.297 | 381 | 220 | 19 | 12 | 373 | 86 | 428 | 5.78e-16 | 79.7 |
| MS.gene22302.t1 | AT4G30440 | 26.184 | 359 | 222 | 14 | 48 | 387 | 89 | 423 | 7.04e-16 | 79.3 |
| MS.gene22302.t1 | AT3G53520 | 23.747 | 379 | 240 | 15 | 3 | 369 | 70 | 411 | 9.58e-13 | 69.7 |
| MS.gene22302.t1 | AT2G28760 | 25.893 | 336 | 211 | 13 | 39 | 369 | 23 | 325 | 1.94e-11 | 65.1 |
| MS.gene22302.t1 | AT2G28760 | 25.893 | 336 | 211 | 13 | 39 | 369 | 23 | 325 | 1.94e-11 | 65.1 |
| MS.gene22302.t1 | AT2G28760 | 25.893 | 336 | 211 | 13 | 39 | 369 | 23 | 325 | 1.94e-11 | 65.1 |
| MS.gene22302.t1 | AT2G28760 | 25.824 | 364 | 229 | 14 | 14 | 369 | 26 | 356 | 2.47e-11 | 65.1 |
Find 94 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAACTCGCTGCTGAATT+TGG | 0.168833 | 5.4:-3881302 | MS.gene22302:CDS |
| ATAAATGGCATAAGATTATT+TGG | 0.181549 | 5.4:+3879495 | None:intergenic |
| ACCGCTACTTGCTGAATAAA+TGG | 0.272562 | 5.4:+3879480 | None:intergenic |
| AATTAGAATTACTACCGTTT+TGG | 0.279718 | 5.4:+3881480 | None:intergenic |
| CATACCTTGGTTCGTCCATA+TGG | 0.299595 | 5.4:+3879907 | None:intergenic |
| GATTGGGACAATCACTCTTT+TGG | 0.302714 | 5.4:-3880141 | MS.gene22302:CDS |
| CACACCCTAGTGGTTATATT+GGG | 0.312315 | 5.4:-3879536 | MS.gene22302:CDS |
| GCACACCCTAGTGGTTATAT+TGG | 0.324849 | 5.4:-3879537 | MS.gene22302:CDS |
| TCATCTTCAGCCACTGTATA+TGG | 0.330380 | 5.4:-3879982 | MS.gene22302:CDS |
| CCACTTTAATCTGTGGAATC+AGG | 0.342821 | 5.4:+3878044 | None:intergenic |
| TACTACAACAACAACTTGAT+TGG | 0.354486 | 5.4:-3880158 | MS.gene22302:CDS |
| TGATGTGGCAGGGCAAAATA+TGG | 0.355594 | 5.4:-3878131 | MS.gene22302:intron |
| TGGAATGAAGAATTCTTAGA+AGG | 0.355786 | 5.4:+3881506 | None:intergenic |
| AGGAAAGGGAACATCAGTTT+TGG | 0.357526 | 5.4:-3878931 | MS.gene22302:CDS |
| AGGAACTCGCTGCTGAATTT+GGG | 0.373544 | 5.4:-3881301 | MS.gene22302:CDS |
| GTTTATGCAATGCAGCAATA+TGG | 0.405003 | 5.4:+3879147 | None:intergenic |
| AACAAAACCGTTCTAGTTAC+CGG | 0.411332 | 5.4:-3881437 | MS.gene22302:CDS |
| AATGATTATAATACAGTTGA+TGG | 0.415727 | 5.4:-3879426 | MS.gene22302:CDS |
| TGTGCCGTGATCAATGGAAT+TGG | 0.420702 | 5.4:-3878097 | MS.gene22302:CDS |
| TCTCGCGTCGGCATCACTAA+TGG | 0.429875 | 5.4:-3881566 | MS.gene22302:CDS |
| TCAGTACATGGAACCTCCTT+CGG | 0.438588 | 5.4:+3879955 | None:intergenic |
| GGCTGTGACGTTTATAACTT+AGG | 0.439614 | 5.4:-3878957 | MS.gene22302:CDS |
| AGTTGCTGTTCATAGAGTTA+AGG | 0.447776 | 5.4:-3881321 | MS.gene22302:CDS |
| TTGGAAGTCATGGCTGCTCA+TGG | 0.451385 | 5.4:-3880122 | MS.gene22302:CDS |
| GGCCACTGCAGGTAGACATC+CGG | 0.451531 | 5.4:-3880595 | MS.gene22302:intron |
| GTGAAGGCTGGCCGTAGGCC+TGG | 0.454952 | 5.4:-3878398 | MS.gene22302:CDS |
| CTTTCAGCAGCAAACCCATA+TGG | 0.460790 | 5.4:-3879922 | MS.gene22302:CDS |
| ACTACAACAACAACTTGATT+GGG | 0.462398 | 5.4:-3880157 | MS.gene22302:CDS |
| CCACTAGGGTGTGCACCCAC+TGG | 0.468983 | 5.4:+3879546 | None:intergenic |
| TGCAGGTAGACATCCGGGAC+AGG | 0.471148 | 5.4:-3880589 | MS.gene22302:intron |
| CACTAGGGTGTGCACCCACT+GGG | 0.471612 | 5.4:+3879547 | None:intergenic |
| TATAATACAGTTGATGGCAC+TGG | 0.475559 | 5.4:-3879420 | MS.gene22302:CDS |
| ATGAAATGTGCCGTGATCAA+TGG | 0.481865 | 5.4:-3878103 | MS.gene22302:CDS |
| GCTCAAGTGCAGCCCTGTCC+CGG | 0.493218 | 5.4:+3880576 | None:intergenic |
| TCAATCGTGCTGATCCAGAT+TGG | 0.502291 | 5.4:-3879596 | MS.gene22302:CDS |
| AAGCTGAAAGAGAACTTAAG+TGG | 0.503547 | 5.4:-3878343 | MS.gene22302:CDS |
| TTTACTCGGCGGTTTCAAAA+CGG | 0.504395 | 5.4:-3881375 | MS.gene22302:CDS |
| GACGTTTATAACTTAGGGAC+AGG | 0.505250 | 5.4:-3878951 | MS.gene22302:CDS |
| TCAGAAAATTCCACTTGTGA+AGG | 0.507254 | 5.4:-3878414 | MS.gene22302:intron |
| ATACCTTGGTTCGTCCATAT+GGG | 0.507726 | 5.4:+3879908 | None:intergenic |
| TATAACTTAGGGACAGGAAA+GGG | 0.507998 | 5.4:-3878945 | MS.gene22302:CDS |
| TCTTCATTCCAAACCCAAAA+CGG | 0.510188 | 5.4:-3881494 | MS.gene22302:CDS |
| ATAATACAGTTGATGGCACT+GGG | 0.520770 | 5.4:-3879419 | MS.gene22302:CDS |
| CATGTTGTTGATTTAGCTGA+TGG | 0.521889 | 5.4:-3879170 | MS.gene22302:CDS |
| GCTTCAATGGCTTCTCGCGT+CGG | 0.522264 | 5.4:-3881578 | None:intergenic |
| TATGGGTTTGCTGCTGAAAG+AGG | 0.522622 | 5.4:+3879925 | None:intergenic |
| AAAATTCCACTTGTGAAGGC+TGG | 0.523612 | 5.4:-3878410 | MS.gene22302:CDS |
| AGAGCACCTTGTGAAAATTG+AGG | 0.524145 | 5.4:+3881273 | None:intergenic |
| GGTGTGGCTACCGATGTAAC+CGG | 0.525888 | 5.4:+3881409 | None:intergenic |
| AACTCTATGAACAGCAACTT+CGG | 0.528814 | 5.4:+3881325 | None:intergenic |
| GCTGTGACGTTTATAACTTA+GGG | 0.529207 | 5.4:-3878956 | MS.gene22302:CDS |
| TCATTGTCCACTTTAATCTG+TGG | 0.538500 | 5.4:+3878037 | None:intergenic |
| ACCGATGTAACCGGCACCGC+CGG | 0.541899 | 5.4:+3881418 | None:intergenic |
| GTGCCGTGATCAATGGAATT+GGG | 0.542969 | 5.4:-3878096 | MS.gene22302:CDS |
| CAGGAGATCCATAGCCGTAA+GGG | 0.545140 | 5.4:+3878063 | None:intergenic |
| AGAGGAAACTCTTCAGTACA+TGG | 0.546798 | 5.4:+3879943 | None:intergenic |
| GTTCTAGTTACCGGCGGTGC+CGG | 0.549409 | 5.4:-3881428 | MS.gene22302:CDS |
| GCCACTGCAGGTAGACATCC+GGG | 0.559878 | 5.4:-3880594 | MS.gene22302:intron |
| TTGTTGTTGTAGTAGAGTAA+CGG | 0.566441 | 5.4:+3880167 | None:intergenic |
| TCAGGAGATCCATAGCCGTA+AGG | 0.570852 | 5.4:+3878062 | None:intergenic |
| TTTATTCAGCAAGTAGCGGT+TGG | 0.573220 | 5.4:-3879477 | MS.gene22302:CDS |
| TGAAGAGTTTAAATAAGAAG+AGG | 0.577484 | 5.4:+3881541 | None:intergenic |
| CTTCAGCCACTGTATATGGT+TGG | 0.578060 | 5.4:-3879978 | MS.gene22302:CDS |
| TATATTGGGGAGGATCCTCA+CGG | 0.584038 | 5.4:-3879522 | MS.gene22302:CDS |
| GCCATTTATTCAGCAAGTAG+CGG | 0.584484 | 5.4:-3879481 | MS.gene22302:CDS |
| GGCTGCTCATGGATGCAAGA+AGG | 0.588720 | 5.4:-3880111 | MS.gene22302:intron |
| AAACTAGAAGAAGCTGACAT+AGG | 0.589751 | 5.4:-3879128 | MS.gene22302:intron |
| TGTATATGGTTGGCCGAAGG+AGG | 0.591711 | 5.4:-3879968 | MS.gene22302:CDS |
| CACTGTATATGGTTGGCCGA+AGG | 0.593964 | 5.4:-3879971 | MS.gene22302:CDS |
| CACTTGTGAAGGCTGGCCGT+AGG | 0.596509 | 5.4:-3878403 | MS.gene22302:CDS |
| ATATTGGGGAGGATCCTCAC+GGG | 0.599402 | 5.4:-3879521 | MS.gene22302:CDS |
| TTATAACTTAGGGACAGGAA+AGG | 0.600592 | 5.4:-3878946 | MS.gene22302:CDS |
| TTTCAGCATCACCAGGCCTA+CGG | 0.603678 | 5.4:+3878387 | None:intergenic |
| TCCTCCCCAATATAACCACT+AGG | 0.607338 | 5.4:+3879531 | None:intergenic |
| TAAACAATTTCAGCATCACC+AGG | 0.611844 | 5.4:+3878380 | None:intergenic |
| TTGAGATACTTCAACCCAGT+GGG | 0.612544 | 5.4:-3879561 | MS.gene22302:CDS |
| TAGCCCAATTCCATTGATCA+CGG | 0.615843 | 5.4:+3878093 | None:intergenic |
| CCCTAGTGGTTATATTGGGG+AGG | 0.615928 | 5.4:-3879532 | MS.gene22302:CDS |
| ACCGGCGGTGCCGGTTACAT+CGG | 0.627367 | 5.4:-3881419 | MS.gene22302:CDS |
| CTACGGCCAGCCTTCACAAG+TGG | 0.628252 | 5.4:+3878404 | None:intergenic |
| GCAGGTAGACATCCGGGACA+GGG | 0.638284 | 5.4:-3880588 | MS.gene22302:intron |
| CCTCCCCAATATAACCACTA+GGG | 0.650185 | 5.4:+3879532 | None:intergenic |
| GCCGAGTAAAAGCTGAAGAA+CGG | 0.652299 | 5.4:+3881388 | None:intergenic |
| GGCACCGCCGGTAACTAGAA+CGG | 0.658798 | 5.4:+3881430 | None:intergenic |
| ACACCCTAGTGGTTATATTG+GGG | 0.659441 | 5.4:-3879535 | MS.gene22302:CDS |
| TTTGCTGGAATGAAAGCAGT+GGG | 0.661073 | 5.4:-3880206 | MS.gene22302:CDS |
| CCAGTGGGTGCACACCCTAG+TGG | 0.666271 | 5.4:-3879546 | MS.gene22302:CDS |
| AAACCCATATGGACGAACCA+AGG | 0.674131 | 5.4:-3879911 | MS.gene22302:intron |
| AGATTATTTGGAATCCCGTG+AGG | 0.688575 | 5.4:+3879507 | None:intergenic |
| CTTCGGCCAACCATATACAG+TGG | 0.701226 | 5.4:+3879972 | None:intergenic |
| ATTGAGATACTTCAACCCAG+TGG | 0.701880 | 5.4:-3879562 | MS.gene22302:CDS |
| GTAAAAGCTGAAGAACGGTG+TGG | 0.738273 | 5.4:+3881393 | None:intergenic |
| TAATACAGTTGATGGCACTG+GGG | 0.771630 | 5.4:-3879418 | MS.gene22302:intron |
| AAAACCGTTCTAGTTACCGG+CGG | 0.775437 | 5.4:-3881434 | MS.gene22302:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAGAATAATAAAATATAAA+GGG | + | chr5.4:3881457-3881476 | None:intergenic | 10.0% |
| !! | CTTTAATAATAATGAAAAAT+CGG | - | chr5.4:3879287-3879306 | MS.gene22302:intron | 10.0% |
| !! | TAGAGAATAATAAAATATAA+AGG | + | chr5.4:3881458-3881477 | None:intergenic | 10.0% |
| !! | CTAAAAAAAATTATTTGATG+TGG | - | chr5.4:3881475-3881494 | MS.gene22302:CDS | 15.0% |
| !! | CTACAATAAAAGAATAAAAA+AGG | + | chr5.4:3879376-3879395 | None:intergenic | 15.0% |
| !! | GAGAATAATAAAATATAAAG+GGG | + | chr5.4:3881456-3881475 | None:intergenic | 15.0% |
| !!! | ATTGATAATTTTCTGAATTT+AGG | - | chr5.4:3878422-3878441 | MS.gene22302:intron | 15.0% |
| !!! | CTTTTTTATTCTTTTATTGT+AGG | - | chr5.4:3879374-3879393 | MS.gene22302:intron | 15.0% |
| !! | AATGATTATAATACAGTTGA+TGG | - | chr5.4:3880195-3880214 | MS.gene22302:CDS | 20.0% |
| !! | AATTGCAAAAATTCTTATCA+AGG | + | chr5.4:3878552-3878571 | None:intergenic | 20.0% |
| !! | AGGTAAGATAATGATATATT+TGG | + | chr5.4:3880526-3880545 | None:intergenic | 20.0% |
| !! | ATAAATGGCATAAGATTATT+TGG | + | chr5.4:3880129-3880148 | None:intergenic | 20.0% |
| !! | ATAATAAAATATAAAGGGGT+AGG | + | chr5.4:3881452-3881471 | None:intergenic | 20.0% |
| !! | GATAATTAGAAAGAATTTGA+AGG | + | chr5.4:3879854-3879873 | None:intergenic | 20.0% |
| !! | TACTGAGAATCAAAATAAAA+AGG | + | chr5.4:3879124-3879143 | None:intergenic | 20.0% |
| !! | TATGATAAGGAAATTGTTTA+GGG | - | chr5.4:3879733-3879752 | MS.gene22302:intron | 20.0% |
| !! | TATTTGATTCCTATAACATT+TGG | + | chr5.4:3881029-3881048 | None:intergenic | 20.0% |
| !! | TCATCTTTATGATATATTCT+GGG | - | chr5.4:3881400-3881419 | MS.gene22302:CDS | 20.0% |
| !! | TGAAGTAGATGAATAATTTA+AGG | - | chr5.4:3879822-3879841 | MS.gene22302:intron | 20.0% |
| !! | TTCATCTTTATGATATATTC+TGG | - | chr5.4:3881399-3881418 | MS.gene22302:CDS | 20.0% |
| !!! | AATAACATTATTTTCCAATC+TGG | + | chr5.4:3880042-3880061 | None:intergenic | 20.0% |
| !!! | AATAATTTACTCTTGTTTAG+AGG | - | chr5.4:3878728-3878747 | MS.gene22302:intron | 20.0% |
| !!! | AGTATTTTTGTTTTGAAAAG+TGG | + | chr5.4:3880809-3880828 | None:intergenic | 20.0% |
| !!! | ATAATTTACTCTTGTTTAGA+GGG | - | chr5.4:3878729-3878748 | MS.gene22302:intron | 20.0% |
| !!! | ATTCAAGCAAAAATTTTAAC+AGG | + | chr5.4:3880305-3880324 | None:intergenic | 20.0% |
| !!! | ATTGGAAAAAGAAAATTTTG+AGG | - | chr5.4:3880594-3880613 | MS.gene22302:intron | 20.0% |
| !!! | TGCAATTTGATGTAATTTTT+GGG | - | chr5.4:3878565-3878584 | MS.gene22302:intron | 20.0% |
| !!! | TTCAAGCAAAAATTTTAACA+GGG | + | chr5.4:3880304-3880323 | None:intergenic | 20.0% |
| !!! | TTGCAATTTGATGTAATTTT+TGG | - | chr5.4:3878564-3878583 | MS.gene22302:intron | 20.0% |
| !!! | TTTGACTTTTCATGATAATT+CGG | - | chr5.4:3878666-3878685 | MS.gene22302:intron | 20.0% |
| ! | AAAAAATTATTTGATGTGGC+AGG | - | chr5.4:3881479-3881498 | MS.gene22302:CDS | 25.0% |
| ! | AAAAATTATTTGATGTGGCA+GGG | - | chr5.4:3881480-3881499 | MS.gene22302:CDS | 25.0% |
| ! | AAAGCCAGAAGTAAAATTAA+GGG | + | chr5.4:3878939-3878958 | None:intergenic | 25.0% |
| ! | AGTAGATGAATAATTTAAGG+AGG | - | chr5.4:3879825-3879844 | MS.gene22302:intron | 25.0% |
| ! | ATATACATATATAACGCTGA+AGG | + | chr5.4:3878392-3878411 | None:intergenic | 25.0% |
| ! | CAAAGACATTAGATAAGTTT+GGG | - | chr5.4:3879196-3879215 | MS.gene22302:intron | 25.0% |
| ! | GCATGAATATTAAATACGTA+AGG | + | chr5.4:3880628-3880647 | None:intergenic | 25.0% |
| ! | GGAAAGGTAATAACTTTATT+TGG | - | chr5.4:3880742-3880761 | MS.gene22302:intron | 25.0% |
| ! | GTATGATAAGGAAATTGTTT+AGG | - | chr5.4:3879732-3879751 | MS.gene22302:intron | 25.0% |
| ! | TAATCTTTAATCGACAATCA+CGG | - | chr5.4:3881080-3881099 | MS.gene22302:intron | 25.0% |
| ! | TACACGTGAAATAATCAAAA+CGG | + | chr5.4:3880256-3880275 | None:intergenic | 25.0% |
| ! | TATTCGAACACAAAATATCT+TGG | + | chr5.4:3880884-3880903 | None:intergenic | 25.0% |
| ! | TGAAGAGTTTAAATAAGAAG+AGG | + | chr5.4:3878083-3878102 | None:intergenic | 25.0% |
| ! | TTCAAAACCCCAAAAATATA+TGG | + | chr5.4:3879789-3879808 | None:intergenic | 25.0% |
| ! | TTCCTTTCTAATATCATGTA+AGG | - | chr5.4:3881333-3881352 | MS.gene22302:CDS | 25.0% |
| ! | TTGATATAATCCTTACTTTG+TGG | + | chr5.4:3879083-3879102 | None:intergenic | 25.0% |
| !! | AATTAGAATTACTACCGTTT+TGG | + | chr5.4:3878144-3878163 | None:intergenic | 25.0% |
| !! | ATTAGAATTACTACCGTTTT+GGG | + | chr5.4:3878143-3878162 | None:intergenic | 25.0% |
| !! | GAATCAAATAATTTTCCTCT+AGG | - | chr5.4:3881039-3881058 | MS.gene22302:intron | 25.0% |
| !! | GATTTGTGTAATTTTTGTGA+TGG | - | chr5.4:3878480-3878499 | MS.gene22302:intron | 25.0% |
| !! | GCAATTTGATGTAATTTTTG+GGG | - | chr5.4:3878566-3878585 | MS.gene22302:intron | 25.0% |
| !! | TAATTTACTCTTGTTTAGAG+GGG | - | chr5.4:3878730-3878749 | MS.gene22302:intron | 25.0% |
| !! | TGTCGATTAAAGATTAAGTT+TGG | + | chr5.4:3881076-3881095 | None:intergenic | 25.0% |
| !!! | AAATTTTAACAGGGTACAAA+TGG | + | chr5.4:3880295-3880314 | None:intergenic | 25.0% |
| !!! | AATTTTAACAGGGTACAAAT+GGG | + | chr5.4:3880294-3880313 | None:intergenic | 25.0% |
| !!! | AGACAGTTCTGATTATATTT+TGG | - | chr5.4:3879005-3879024 | MS.gene22302:intron | 25.0% |
| !!! | TGGTTTTTTTCATAGGATTT+TGG | + | chr5.4:3878903-3878922 | None:intergenic | 25.0% |
| !!! | TTTTTTCATAGGATTTTGGA+GGG | + | chr5.4:3878899-3878918 | None:intergenic | 25.0% |
| !!! | TTTTTTTCATAGGATTTTGG+AGG | + | chr5.4:3878900-3878919 | None:intergenic | 25.0% |
| AACTTATCTAATGTCTTTGC+AGG | + | chr5.4:3879195-3879214 | None:intergenic | 30.0% | |
| ACAATTTCCTTATCATACCT+TGG | + | chr5.4:3879730-3879749 | None:intergenic | 30.0% | |
| ACTACAACAACAACTTGATT+GGG | - | chr5.4:3879464-3879483 | MS.gene22302:CDS | 30.0% | |
| AGAATCTCACACATTAAATG+TGG | + | chr5.4:3879251-3879270 | None:intergenic | 30.0% | |
| ATAGCACTCCATAAAGAAAA+GGG | + | chr5.4:3880982-3881001 | None:intergenic | 30.0% | |
| GAAAGCCAGAAGTAAAATTA+AGG | + | chr5.4:3878940-3878959 | None:intergenic | 30.0% | |
| GAAAGCTCAAAAGCAATATT+TGG | + | chr5.4:3878620-3878639 | None:intergenic | 30.0% | |
| GCAAAGACATTAGATAAGTT+TGG | - | chr5.4:3879195-3879214 | MS.gene22302:intron | 30.0% | |
| GCTCAATGTTATACATGATT+TGG | + | chr5.4:3881145-3881164 | None:intergenic | 30.0% | |
| GTCCTTACATGATATTAGAA+AGG | + | chr5.4:3881338-3881357 | None:intergenic | 30.0% | |
| TACTACAACAACAACTTGAT+TGG | - | chr5.4:3879463-3879482 | MS.gene22302:CDS | 30.0% | |
| TATAGCACTCCATAAAGAAA+AGG | + | chr5.4:3880983-3881002 | None:intergenic | 30.0% | |
| TATTCCTTATCTAACTGATC+AGG | - | chr5.4:3881308-3881327 | MS.gene22302:CDS | 30.0% | |
| TCTAATATCATGTAAGGACT+GGG | - | chr5.4:3881339-3881358 | MS.gene22302:CDS | 30.0% | |
| TGGAATGAAGAATTCTTAGA+AGG | + | chr5.4:3878118-3878137 | None:intergenic | 30.0% | |
| TTCTAATATCATGTAAGGAC+TGG | - | chr5.4:3881338-3881357 | MS.gene22302:CDS | 30.0% | |
| TTTATGATATATTCTGGGTG+TGG | - | chr5.4:3881405-3881424 | MS.gene22302:CDS | 30.0% | |
| ! | ATTTTTGCTTCCACAAAGTA+AGG | - | chr5.4:3879070-3879089 | MS.gene22302:intron | 30.0% |
| ! | GAATAACCTCAATTTTCACA+AGG | - | chr5.4:3878342-3878361 | MS.gene22302:CDS | 30.0% |
| ! | TACCTTTGATTTCTTCACTA+TGG | - | chr5.4:3880381-3880400 | MS.gene22302:intron | 30.0% |
| ! | TGTCTCTGCCATATATTTTT+GGG | - | chr5.4:3879778-3879797 | MS.gene22302:intron | 30.0% |
| ! | TTGTGTAATTTTTGTGATGG+CGG | - | chr5.4:3878483-3878502 | MS.gene22302:intron | 30.0% |
| ! | TTGTTGTTGTAGTAGAGTAA+CGG | + | chr5.4:3879457-3879476 | None:intergenic | 30.0% |
| !! | ACACTTACTCGTTTTGTTAT+TGG | - | chr5.4:3880576-3880595 | MS.gene22302:CDS | 30.0% |
| !! | CACATGCTTTTATTTCTTTG+CGG | - | chr5.4:3880835-3880854 | MS.gene22302:intron | 30.0% |
| !!! | AAAAGAAAATTTTGAGGCAG+TGG | - | chr5.4:3880600-3880619 | MS.gene22302:intron | 30.0% |
| !!! | CGAGTAAGTGTTTTTTTGAA+AGG | + | chr5.4:3880567-3880586 | None:intergenic | 30.0% |
| !!! | TTCTCTTTCAGCTTTTTTTG+TGG | + | chr5.4:3881272-3881291 | None:intergenic | 30.0% |
| AAACTAGAAGAAGCTGACAT+AGG | - | chr5.4:3880493-3880512 | MS.gene22302:intron | 35.0% | |
| AAAGCCTGATCAGTTAGATA+AGG | + | chr5.4:3881315-3881334 | None:intergenic | 35.0% | |
| AACTCTATGAACAGCAACTT+CGG | + | chr5.4:3878299-3878318 | None:intergenic | 35.0% | |
| AAGCTGAAAGAGAACTTAAG+TGG | - | chr5.4:3881278-3881297 | MS.gene22302:intron | 35.0% | |
| AAGTGGCTACCAAATGTTAT+AGG | - | chr5.4:3881017-3881036 | MS.gene22302:intron | 35.0% | |
| ACATTAAATGTGGAGAAGTG+TGG | + | chr5.4:3879241-3879260 | None:intergenic | 35.0% | |
| AGCCATAGTGAAGAAATCAA+AGG | + | chr5.4:3880386-3880405 | None:intergenic | 35.0% | |
| ATAGATAGAGACATGCAAAG+TGG | - | chr5.4:3881000-3881019 | MS.gene22302:intron | 35.0% | |
| ATGGTTCTTACCTTATTCTC+AGG | - | chr5.4:3880414-3880433 | MS.gene22302:intron | 35.0% | |
| CTGAAGGTAAAAAATCGCAA+CGG | + | chr5.4:3878376-3878395 | None:intergenic | 35.0% | |
| GCTGTGACGTTTATAACTTA+GGG | - | chr5.4:3880665-3880684 | MS.gene22302:intron | 35.0% | |
| GTTTATGCAATGCAGCAATA+TGG | + | chr5.4:3880477-3880496 | None:intergenic | 35.0% | |
| TAAACAATTTCAGCATCACC+AGG | + | chr5.4:3881244-3881263 | None:intergenic | 35.0% | |
| TATAACTTAGGGACAGGAAA+GGG | - | chr5.4:3880676-3880695 | MS.gene22302:intron | 35.0% | |
| TCAGAAAATTCCACTTGTGA+AGG | - | chr5.4:3881207-3881226 | MS.gene22302:intron | 35.0% | |
| TCTTACCTTATTCTCAGGTT+CGG | - | chr5.4:3880419-3880438 | MS.gene22302:intron | 35.0% | |
| TCTTCATTCCAAACCCAAAA+CGG | - | chr5.4:3878127-3878146 | MS.gene22302:intron | 35.0% | |
| TTAGAGGGGAACAATTTAGA+TGG | - | chr5.4:3878744-3878763 | MS.gene22302:intron | 35.0% | |
| TTATAACTTAGGGACAGGAA+AGG | - | chr5.4:3880675-3880694 | MS.gene22302:intron | 35.0% | |
| TTCTTCACTATGGCTCTTAT+TGG | - | chr5.4:3880391-3880410 | MS.gene22302:intron | 35.0% | |
| TTGGATAGAAAGAATCCTAG+AGG | + | chr5.4:3881057-3881076 | None:intergenic | 35.0% | |
| ! | AACAAAACCGTTCTAGTTAC+CGG | - | chr5.4:3878184-3878203 | MS.gene22302:intron | 35.0% |
| ! | AGATAACATGAAGCACCAAA+TGG | + | chr5.4:3879319-3879338 | None:intergenic | 35.0% |
| ! | AGTTGCTGTTCATAGAGTTA+AGG | - | chr5.4:3878300-3878319 | MS.gene22302:intron | 35.0% |
| ! | CACACCCTTAATTTTACTTC+TGG | - | chr5.4:3878932-3878951 | MS.gene22302:CDS | 35.0% |
| ! | CTGTCTCTGCCATATATTTT+TGG | - | chr5.4:3879777-3879796 | MS.gene22302:intron | 35.0% |
| ! | GATGCAGTTATACATTTTGC+TGG | - | chr5.4:3879400-3879419 | MS.gene22302:intron | 35.0% |
| ! | TGTTTGCAGTTTGTTCAGTA+TGG | - | chr5.4:3878975-3878994 | MS.gene22302:intron | 35.0% |
| !! | AATCACTCTTTTGGAAGTCA+TGG | - | chr5.4:3879489-3879508 | MS.gene22302:CDS | 35.0% |
| !! | ATAATACAGTTGATGGCACT+GGG | - | chr5.4:3880202-3880221 | MS.gene22302:CDS | 35.0% |
| !! | CATGTTGTTGATTTAGCTGA+TGG | - | chr5.4:3880451-3880470 | MS.gene22302:intron | 35.0% |
| !! | GTCTCTGCCATATATTTTTG+GGG | - | chr5.4:3879779-3879798 | MS.gene22302:intron | 35.0% |
| !! | TATAATACAGTTGATGGCAC+TGG | - | chr5.4:3880201-3880220 | MS.gene22302:CDS | 35.0% |
| !!! | AATTACTACCGTTTTGGGTT+TGG | + | chr5.4:3878138-3878157 | None:intergenic | 35.0% |
| !!! | GAAGGTAAGTTCCTTGTTTT+TGG | - | chr5.4:3879528-3879547 | MS.gene22302:CDS | 35.0% |
| !!! | TGCGAGTTGGTTTTTTTCAT+AGG | + | chr5.4:3878910-3878929 | None:intergenic | 35.0% |
| AAAATTCCACTTGTGAAGGC+TGG | - | chr5.4:3881211-3881230 | MS.gene22302:intron | 40.0% | |
| AACTGAGACTATAGAGCAAC+TGG | + | chr5.4:3880955-3880974 | None:intergenic | 40.0% | |
| ACACCCTAGTGGTTATATTG+GGG | - | chr5.4:3880086-3880105 | MS.gene22302:intron | 40.0% | |
| AGAGGAAACTCTTCAGTACA+TGG | + | chr5.4:3879681-3879700 | None:intergenic | 40.0% | |
| AGAGTTGACAGCAAGGATAA+AGG | + | chr5.4:3880782-3880801 | None:intergenic | 40.0% | |
| ATATTCATGCTGTGTGTGTC+TGG | - | chr5.4:3880638-3880657 | MS.gene22302:intron | 40.0% | |
| ATGAAATGTGCCGTGATCAA+TGG | - | chr5.4:3881518-3881537 | MS.gene22302:CDS | 40.0% | |
| ATTGAGATACTTCAACCCAG+TGG | - | chr5.4:3880059-3880078 | MS.gene22302:intron | 40.0% | |
| CACACCCTAGTGGTTATATT+GGG | - | chr5.4:3880085-3880104 | MS.gene22302:intron | 40.0% | |
| CGTATCCTTAACTACAGTTG+GGG | + | chr5.4:3880914-3880933 | None:intergenic | 40.0% | |
| CTTACCTTATTCTCAGGTTC+GGG | - | chr5.4:3880420-3880439 | MS.gene22302:intron | 40.0% | |
| CTTGAATAAACTGTCTGTCC+TGG | - | chr5.4:3880318-3880337 | MS.gene22302:intron | 40.0% | |
| GACGTTTATAACTTAGGGAC+AGG | - | chr5.4:3880670-3880689 | MS.gene22302:intron | 40.0% | |
| GATATATTCTGGGTGTGGTT+TGG | - | chr5.4:3881410-3881429 | MS.gene22302:CDS | 40.0% | |
| GCCATTTATTCAGCAAGTAG+CGG | - | chr5.4:3880140-3880159 | MS.gene22302:CDS | 40.0% | |
| GCGTATCCTTAACTACAGTT+GGG | + | chr5.4:3880915-3880934 | None:intergenic | 40.0% | |
| GGCTGTGACGTTTATAACTT+AGG | - | chr5.4:3880664-3880683 | MS.gene22302:intron | 40.0% | |
| GTGCATCTCATCCAAAAACA+AGG | + | chr5.4:3879542-3879561 | None:intergenic | 40.0% | |
| TAATCCCGAACCTGAGAATA+AGG | + | chr5.4:3880427-3880446 | None:intergenic | 40.0% | |
| TAGCCCAATTCCATTGATCA+CGG | + | chr5.4:3881531-3881550 | None:intergenic | 40.0% | |
| TCACTATGGCTCTTATTGGA+TGG | - | chr5.4:3880395-3880414 | MS.gene22302:intron | 40.0% | |
| TCATCTTCAGCCACTGTATA+TGG | - | chr5.4:3879639-3879658 | MS.gene22302:intron | 40.0% | |
| TGCGTATCCTTAACTACAGT+TGG | + | chr5.4:3880916-3880935 | None:intergenic | 40.0% | |
| TGGAATTAGAGTTGACAGCA+AGG | + | chr5.4:3880789-3880808 | None:intergenic | 40.0% | |
| TTGAGATACTTCAACCCAGT+GGG | - | chr5.4:3880060-3880079 | MS.gene22302:intron | 40.0% | |
| TTTACTCGGCGGTTTCAAAA+CGG | - | chr5.4:3878246-3878265 | MS.gene22302:intron | 40.0% | |
| TTTATTCAGCAAGTAGCGGT+TGG | - | chr5.4:3880144-3880163 | MS.gene22302:CDS | 40.0% | |
| TTTCCAAAAACTGTCAGTGC+AGG | + | chr5.4:3880177-3880196 | None:intergenic | 40.0% | |
| TTTGCTGGAATGAAAGCAGT+GGG | - | chr5.4:3879415-3879434 | MS.gene22302:intron | 40.0% | |
| ! | AAAAATCGGCTCCTTCCATT+TGG | - | chr5.4:3879301-3879320 | MS.gene22302:intron | 40.0% |
| ! | AACATGAAGCACCAAATGGA+AGG | + | chr5.4:3879315-3879334 | None:intergenic | 40.0% |
| ! | ACCGCTACTTGCTGAATAAA+TGG | + | chr5.4:3880144-3880163 | None:intergenic | 40.0% |
| ! | ACCGTTCTTCAGCTTTTACT+CGG | - | chr5.4:3878232-3878251 | MS.gene22302:intron | 40.0% |
| ! | AGAGCACCTTGTGAAAATTG+AGG | + | chr5.4:3878351-3878370 | None:intergenic | 40.0% |
| ! | AGATTATTTGGAATCCCGTG+AGG | + | chr5.4:3880117-3880136 | None:intergenic | 40.0% |
| ! | AGGAAAGGGAACATCAGTTT+TGG | - | chr5.4:3880690-3880709 | MS.gene22302:intron | 40.0% |
| ! | AGTTGCCTCCCTTTTCTTTA+TGG | - | chr5.4:3880971-3880990 | MS.gene22302:intron | 40.0% |
| ! | ATACCTTGGTTCGTCCATAT+GGG | + | chr5.4:3879716-3879735 | None:intergenic | 40.0% |
| ! | GATTGGGACAATCACTCTTT+TGG | - | chr5.4:3879480-3879499 | MS.gene22302:CDS | 40.0% |
| ! | TTTTGCTGGAATGAAAGCAG+TGG | - | chr5.4:3879414-3879433 | MS.gene22302:intron | 40.0% |
| !! | TAATACAGTTGATGGCACTG+GGG | - | chr5.4:3880203-3880222 | MS.gene22302:CDS | 40.0% |
| !!! | GATTATATTTTGGCCACTGC+AGG | - | chr5.4:3879015-3879034 | MS.gene22302:intron | 40.0% |
| !!! | GTAATTTTTGTGATGGCGGT+GGG | - | chr5.4:3878487-3878506 | MS.gene22302:intron | 40.0% |
| !!! | TGTAATTTTTGTGATGGCGG+TGG | - | chr5.4:3878486-3878505 | MS.gene22302:intron | 40.0% |
| AAACCCATATGGACGAACCA+AGG | - | chr5.4:3879710-3879729 | MS.gene22302:intron | 45.0% | |
| AAGGAACTCGCTGCTGAATT+TGG | - | chr5.4:3878319-3878338 | MS.gene22302:intron | 45.0% | |
| AGCAAAAACCCTTACGGCTA+TGG | - | chr5.4:3881550-3881569 | MS.gene22302:CDS | 45.0% | |
| AGGAACTCGCTGCTGAATTT+GGG | - | chr5.4:3878320-3878339 | MS.gene22302:intron | 45.0% | |
| AGTTGCCCCAACTGTAGTTA+AGG | - | chr5.4:3880906-3880925 | MS.gene22302:intron | 45.0% | |
| CAAGGATAAAGGCGACAGAT+AGG | + | chr5.4:3880771-3880790 | None:intergenic | 45.0% | |
| CCTCCCCAATATAACCACTA+GGG | + | chr5.4:3880092-3880111 | None:intergenic | 45.0% | |
| CTTCAGCCACTGTATATGGT+TGG | - | chr5.4:3879643-3879662 | MS.gene22302:intron | 45.0% | |
| CTTTCAGCAGCAAACCCATA+TGG | - | chr5.4:3879699-3879718 | MS.gene22302:intron | 45.0% | |
| GCACACCCTAGTGGTTATAT+TGG | - | chr5.4:3880084-3880103 | MS.gene22302:intron | 45.0% | |
| GCACTCCATAAAGAAAAGGG+AGG | + | chr5.4:3880979-3880998 | None:intergenic | 45.0% | |
| GCCGAGTAAAAGCTGAAGAA+CGG | + | chr5.4:3878236-3878255 | None:intergenic | 45.0% | |
| GGACACGAGTAAGTGTTAGA+AGG | + | chr5.4:3880546-3880565 | None:intergenic | 45.0% | |
| GGACGAACCAAGGTATGATA+AGG | - | chr5.4:3879720-3879739 | MS.gene22302:intron | 45.0% | |
| GTAAAAGCTGAAGAACGGTG+TGG | + | chr5.4:3878231-3878250 | None:intergenic | 45.0% | |
| GTGCCGTGATCAATGGAATT+GGG | - | chr5.4:3881525-3881544 | MS.gene22302:CDS | 45.0% | |
| TATATTGGGGAGGATCCTCA+CGG | - | chr5.4:3880099-3880118 | MS.gene22302:intron | 45.0% | |
| TCAGTACATGGAACCTCCTT+CGG | + | chr5.4:3879669-3879688 | None:intergenic | 45.0% | |
| TCCTCCCCAATATAACCACT+AGG | + | chr5.4:3880093-3880112 | None:intergenic | 45.0% | |
| TGATGTGGCAGGGCAAAATA+TGG | - | chr5.4:3881490-3881509 | MS.gene22302:CDS | 45.0% | |
| TGTGCCGTGATCAATGGAAT+TGG | - | chr5.4:3881524-3881543 | MS.gene22302:CDS | 45.0% | |
| ! | AAAACCGTTCTAGTTACCGG+CGG | - | chr5.4:3878187-3878206 | MS.gene22302:intron | 45.0% |
| ! | ATATTCTGGGTGTGGTTTGG+TGG | - | chr5.4:3881413-3881432 | MS.gene22302:CDS | 45.0% |
| ! | CATACCTTGGTTCGTCCATA+TGG | + | chr5.4:3879717-3879736 | None:intergenic | 45.0% |
| ! | GATGGTAAGAGCTTTTGAGC+AGG | - | chr5.4:3880714-3880733 | MS.gene22302:intron | 45.0% |
| ! | GTTCTTCAGCTTTTACTCGG+CGG | - | chr5.4:3878235-3878254 | MS.gene22302:intron | 45.0% |
| ! | TCAATCGTGCTGATCCAGAT+TGG | - | chr5.4:3880025-3880044 | MS.gene22302:intron | 45.0% |
| ! | TTAAGGGTGTGTTTGCGAGT+TGG | + | chr5.4:3878923-3878942 | None:intergenic | 45.0% |
| ! | TTTTGAGCAGGCATCTGGAA+AGG | - | chr5.4:3880726-3880745 | MS.gene22302:intron | 45.0% |
| !! | TATGGGTTTGCTGCTGAAAG+AGG | + | chr5.4:3879699-3879718 | None:intergenic | 45.0% |
| !! | TGGGCTAGCAAAAACCCTTA+CGG | - | chr5.4:3881544-3881563 | MS.gene22302:CDS | 45.0% |
| !!! | GGGAACATCAGTTTTGGAGA+TGG | - | chr5.4:3880696-3880715 | MS.gene22302:intron | 45.0% |
| ATATTGGGGAGGATCCTCAC+GGG | - | chr5.4:3880100-3880119 | MS.gene22302:intron | 50.0% | |
| CAGGAGATCCATAGCCGTAA+GGG | + | chr5.4:3881561-3881580 | None:intergenic | 50.0% | |
| CCCTAGTGGTTATATTGGGG+AGG | - | chr5.4:3880089-3880108 | MS.gene22302:intron | 50.0% | |
| CTTCGGCCAACCATATACAG+TGG | + | chr5.4:3879652-3879671 | None:intergenic | 50.0% | |
| GGCTGCTGCTACTATTTGAG+TGG | + | chr5.4:3879174-3879193 | None:intergenic | 50.0% | |
| TACATGCACCCAACAGAACC+AGG | + | chr5.4:3880339-3880358 | None:intergenic | 50.0% | |
| TCAGGAGATCCATAGCCGTA+AGG | + | chr5.4:3881562-3881581 | None:intergenic | 50.0% | |
| TTGGAAGTCATGGCTGCTCA+TGG | - | chr5.4:3879499-3879518 | MS.gene22302:CDS | 50.0% | |
| TTTCAGCATCACCAGGCCTA+CGG | + | chr5.4:3881237-3881256 | None:intergenic | 50.0% | |
| ! | AGAGCTTTTGAGCAGGCATC+TGG | - | chr5.4:3880721-3880740 | MS.gene22302:intron | 50.0% |
| ! | CACTGTATATGGTTGGCCGA+AGG | - | chr5.4:3879650-3879669 | MS.gene22302:intron | 50.0% |
| ! | TGTATATGGTTGGCCGAAGG+AGG | - | chr5.4:3879653-3879672 | MS.gene22302:intron | 50.0% |
| !! | ACTGTCTGTCCTGGTTCTGT+TGG | - | chr5.4:3880327-3880346 | MS.gene22302:intron | 50.0% |
| !! | CGTCCTGCACTGACAGTTTT+TGG | - | chr5.4:3880171-3880190 | MS.gene22302:CDS | 50.0% |
| !! | CTGTCTGTCCTGGTTCTGTT+GGG | - | chr5.4:3880328-3880347 | MS.gene22302:intron | 50.0% |
| CATGCTGTGTGTGTCTGGAC+AGG | - | chr5.4:3880643-3880662 | MS.gene22302:intron | 55.0% | |
| GGCTGCTCATGGATGCAAGA+AGG | - | chr5.4:3879510-3879529 | MS.gene22302:CDS | 55.0% | |
| GGTGTGGCTACCGATGTAAC+CGG | + | chr5.4:3878215-3878234 | None:intergenic | 55.0% | |
| ! | TCTCGCGTCGGCATCACTAA+TGG | - | chr5.4:3878055-3878074 | MS.gene22302:CDS | 55.0% |
| CACTAGGGTGTGCACCCACT+GGG | + | chr5.4:3880077-3880096 | None:intergenic | 60.0% | |
| CTACGGCCAGCCTTCACAAG+TGG | + | chr5.4:3881220-3881239 | None:intergenic | 60.0% | |
| GCAGGTAGACATCCGGGACA+GGG | - | chr5.4:3879033-3879052 | MS.gene22302:intron | 60.0% | |
| GCCACTGCAGGTAGACATCC+GGG | - | chr5.4:3879027-3879046 | MS.gene22302:intron | 60.0% | |
| GGCACCGCCGGTAACTAGAA+CGG | + | chr5.4:3878194-3878213 | None:intergenic | 60.0% | |
| GGCCACTGCAGGTAGACATC+CGG | - | chr5.4:3879026-3879045 | MS.gene22302:intron | 60.0% | |
| TCCCGGATGTCTACCTGCAG+TGG | + | chr5.4:3879031-3879050 | None:intergenic | 60.0% | |
| TGCAGGTAGACATCCGGGAC+AGG | - | chr5.4:3879032-3879051 | MS.gene22302:intron | 60.0% | |
| ! | CACTTGTGAAGGCTGGCCGT+AGG | - | chr5.4:3881218-3881237 | MS.gene22302:intron | 60.0% |
| ! | GTTCTAGTTACCGGCGGTGC+CGG | - | chr5.4:3878193-3878212 | MS.gene22302:intron | 60.0% |
| ACCGATGTAACCGGCACCGC+CGG | + | chr5.4:3878206-3878225 | None:intergenic | 65.0% | |
| CCACTAGGGTGTGCACCCAC+TGG | + | chr5.4:3880078-3880097 | None:intergenic | 65.0% | |
| CCAGTGGGTGCACACCCTAG+TGG | - | chr5.4:3880075-3880094 | MS.gene22302:intron | 65.0% | |
| GCTCAAGTGCAGCCCTGTCC+CGG | + | chr5.4:3879048-3879067 | None:intergenic | 65.0% | |
| !! | ACCGGCGGTGCCGGTTACAT+CGG | - | chr5.4:3878202-3878221 | MS.gene22302:intron | 65.0% |
| ! | GTGAAGGCTGGCCGTAGGCC+TGG | - | chr5.4:3881223-3881242 | MS.gene22302:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 3878049 | 3881594 | 3878049 | ID=MS.gene22302 |
| chr5.4 | mRNA | 3878049 | 3881594 | 3878049 | ID=MS.gene22302.t1;Parent=MS.gene22302 |
| chr5.4 | exon | 3881280 | 3881594 | 3881280 | ID=MS.gene22302.t1.exon1;Parent=MS.gene22302.t1 |
| chr5.4 | CDS | 3881280 | 3881594 | 3881280 | ID=cds.MS.gene22302.t1;Parent=MS.gene22302.t1 |
| chr5.4 | exon | 3880557 | 3880606 | 3880557 | ID=MS.gene22302.t1.exon2;Parent=MS.gene22302.t1 |
| chr5.4 | CDS | 3880557 | 3880606 | 3880557 | ID=cds.MS.gene22302.t1;Parent=MS.gene22302.t1 |
| chr5.4 | exon | 3880112 | 3880247 | 3880112 | ID=MS.gene22302.t1.exon3;Parent=MS.gene22302.t1 |
| chr5.4 | CDS | 3880112 | 3880247 | 3880112 | ID=cds.MS.gene22302.t1;Parent=MS.gene22302.t1 |
| chr5.4 | exon | 3879912 | 3880013 | 3879912 | ID=MS.gene22302.t1.exon4;Parent=MS.gene22302.t1 |
| chr5.4 | CDS | 3879912 | 3880013 | 3879912 | ID=cds.MS.gene22302.t1;Parent=MS.gene22302.t1 |
| chr5.4 | exon | 3879419 | 3879646 | 3879419 | ID=MS.gene22302.t1.exon5;Parent=MS.gene22302.t1 |
| chr5.4 | CDS | 3879419 | 3879646 | 3879419 | ID=cds.MS.gene22302.t1;Parent=MS.gene22302.t1 |
| chr5.4 | exon | 3879129 | 3879207 | 3879129 | ID=MS.gene22302.t1.exon6;Parent=MS.gene22302.t1 |
| chr5.4 | CDS | 3879129 | 3879207 | 3879129 | ID=cds.MS.gene22302.t1;Parent=MS.gene22302.t1 |
| chr5.4 | exon | 3878896 | 3878978 | 3878896 | ID=MS.gene22302.t1.exon7;Parent=MS.gene22302.t1 |
| chr5.4 | CDS | 3878896 | 3878978 | 3878896 | ID=cds.MS.gene22302.t1;Parent=MS.gene22302.t1 |
| chr5.4 | exon | 3878341 | 3878432 | 3878341 | ID=MS.gene22302.t1.exon8;Parent=MS.gene22302.t1 |
| chr5.4 | CDS | 3878341 | 3878432 | 3878341 | ID=cds.MS.gene22302.t1;Parent=MS.gene22302.t1 |
| chr5.4 | exon | 3878049 | 3878142 | 3878049 | ID=MS.gene22302.t1.exon9;Parent=MS.gene22302.t1 |
| chr5.4 | CDS | 3878049 | 3878142 | 3878049 | ID=cds.MS.gene22302.t1;Parent=MS.gene22302.t1 |
| Gene Sequence |
| Protein sequence |
