AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene048934

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048934.t1 MTR_8g099535 97.983 347 7 0 1 347 1 347 0.0 704
MS.gene048934.t1 MTR_5g009170 82.558 344 60 0 3 346 46 389 0.0 610
MS.gene048934.t1 MTR_5g009160 82.507 343 60 0 1 343 1 343 0.0 606
MS.gene048934.t1 MTR_5g009160 83.271 269 45 0 75 343 12 280 5.99e-173 482
MS.gene048934.t1 MTR_8g096880 66.764 343 112 2 2 342 4 346 1.31e-170 478
MS.gene048934.t1 MTR_4g134490 65.982 341 114 2 4 342 25 365 1.33e-167 472
MS.gene048934.t1 MTR_4g134490 64.841 347 114 3 4 342 25 371 9.24e-165 465
MS.gene048934.t1 MTR_8g096880 66.562 320 105 2 2 319 4 323 2.90e-154 436
MS.gene048934.t1 MTR_8g096880 66.323 291 96 2 2 290 4 294 5.72e-139 397
MS.gene048934.t1 MTR_5g009160 81.944 216 39 0 75 290 12 227 1.41e-132 377
MS.gene048934.t1 MTR_2g032100 41.076 353 182 7 6 345 73 412 5.05e-78 245
MS.gene048934.t1 MTR_8g089180 40.401 349 186 6 6 343 73 410 1.02e-76 242
MS.gene048934.t1 MTR_8g089180 40.401 349 186 6 6 343 73 410 1.02e-76 242
MS.gene048934.t1 MTR_2g032100 41.753 194 111 2 6 199 73 264 5.66e-44 153
MS.gene048934.t1 MTR_8g099285 96.296 54 2 0 235 288 3 56 5.18e-30 109
MS.gene048934.t1 MTR_4g102270 28.205 351 212 12 2 334 91 419 2.88e-23 100
MS.gene048934.t1 MTR_4g129820 27.778 360 217 14 5 345 96 431 1.43e-21 95.5
MS.gene048934.t1 MTR_3g084090 28.000 350 208 13 5 334 100 425 6.72e-21 93.6
MS.gene048934.t1 MTR_5g011940 27.410 332 201 12 5 318 91 400 2.61e-20 91.7
MS.gene048934.t1 MTR_0354s0040 28.012 332 201 11 5 319 83 393 2.63e-20 91.7
MS.gene048934.t1 MTR_4g024600 26.781 351 219 13 5 336 102 433 1.49e-19 89.7
MS.gene048934.t1 MTR_1g009600 27.479 353 213 14 4 344 5 326 1.75e-19 90.1
MS.gene048934.t1 MTR_0034s0060 27.557 352 214 14 4 344 137 458 6.21e-19 88.6
MS.gene048934.t1 MTR_2g073240 27.273 352 215 14 4 344 19 340 1.30e-18 87.4
MS.gene048934.t1 MTR_4g063600 28.923 325 193 13 2 321 30 321 2.23e-17 82.4
MS.gene048934.t1 MTR_4g063600 29.179 329 184 15 2 321 30 318 3.56e-17 81.6
MS.gene048934.t1 MTR_2g096660 27.273 330 202 13 2 326 36 332 1.10e-14 74.7
MS.gene048934.t1 MTR_1g088480 27.692 325 183 16 6 321 120 401 1.87e-14 74.3
MS.gene048934.t1 MTR_4g120030 27.607 326 184 16 3 319 110 392 2.99e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048934.t1 AT4G10960 80.403 347 68 0 1 347 1 347 0.0 586
MS.gene048934.t1 AT1G64440 79.118 340 71 0 6 345 5 344 0.0 571
MS.gene048934.t1 AT4G23920 80.060 336 67 0 4 339 3 338 0.0 569
MS.gene048934.t1 AT1G12780 65.982 341 114 2 4 342 7 347 4.78e-170 477
MS.gene048934.t1 AT1G63180 65.982 341 114 2 4 342 7 347 4.04e-169 475
MS.gene048934.t1 AT1G63180 65.157 287 98 2 4 288 7 293 8.59e-137 391
MS.gene048934.t1 AT1G30620 42.407 349 179 6 6 343 73 410 5.91e-82 255
MS.gene048934.t1 AT1G30620 42.407 349 179 6 6 343 73 410 5.91e-82 255
MS.gene048934.t1 AT1G30620 42.407 349 179 6 6 343 73 410 5.91e-82 255
MS.gene048934.t1 AT1G30620 42.407 349 179 6 6 343 73 410 5.91e-82 255
MS.gene048934.t1 AT1G30620 42.407 349 179 6 6 343 72 409 6.26e-82 255
MS.gene048934.t1 AT5G44480 41.379 348 182 6 6 342 73 409 3.78e-79 248
MS.gene048934.t1 AT5G44480 41.379 348 182 6 6 342 73 409 3.78e-79 248
MS.gene048934.t1 AT5G44480 41.379 348 182 6 6 342 73 409 3.78e-79 248
MS.gene048934.t1 AT5G44480 41.379 348 182 6 6 342 97 433 8.93e-79 248
MS.gene048934.t1 AT4G20460 40.793 353 183 7 6 345 72 411 1.27e-76 241
MS.gene048934.t1 AT2G34850 40.773 233 131 4 117 345 1 230 9.92e-49 164
MS.gene048934.t1 AT2G34850 40.773 233 131 4 117 345 1 230 9.92e-49 164
MS.gene048934.t1 AT2G34850 40.773 233 131 4 117 345 1 230 9.92e-49 164
MS.gene048934.t1 AT2G34850 40.773 233 131 4 117 345 1 230 9.92e-49 164
MS.gene048934.t1 AT1G30620 44.330 194 106 2 6 199 73 264 1.67e-48 165
MS.gene048934.t1 AT4G00110 28.228 333 199 12 5 319 92 402 4.55e-22 97.1
MS.gene048934.t1 AT2G45310 26.667 345 219 12 5 334 98 423 1.44e-21 95.5
MS.gene048934.t1 AT1G02000 27.628 333 201 12 5 319 93 403 1.48e-20 92.4
MS.gene048934.t1 AT1G53500 27.195 353 214 15 4 344 9 330 6.65e-20 91.3
MS.gene048934.t1 AT3G23820 27.246 345 217 11 5 334 113 438 1.01e-19 90.1
MS.gene048934.t1 AT1G78570 27.066 351 217 12 4 344 7 328 2.52e-19 89.7
MS.gene048934.t1 AT4G12250 26.744 344 220 11 5 334 97 422 2.04e-18 86.3
MS.gene048934.t1 AT3G14790 26.074 349 223 11 4 344 7 328 3.14e-18 86.3
MS.gene048934.t1 AT3G14790 26.074 349 223 11 4 344 10 331 3.72e-18 86.3
MS.gene048934.t1 AT2G28760 28.000 325 196 13 2 321 29 320 1.05e-17 83.6
MS.gene048934.t1 AT2G28760 28.000 325 196 13 2 321 29 320 1.05e-17 83.6
MS.gene048934.t1 AT2G28760 28.000 325 196 13 2 321 29 320 1.05e-17 83.6
MS.gene048934.t1 AT2G28760 28.000 325 196 13 2 321 60 351 1.73e-17 83.2
MS.gene048934.t1 AT4G30440 26.404 356 221 13 5 342 89 421 3.25e-17 82.8
MS.gene048934.t1 AT5G59290 27.726 321 194 13 6 321 3 290 1.70e-14 73.6
MS.gene048934.t1 AT2G47650 27.778 342 194 19 6 330 123 428 1.45e-13 71.6
MS.gene048934.t1 AT2G47650 27.139 339 194 18 6 330 123 422 2.68e-13 70.9
MS.gene048934.t1 AT3G62830 25.664 339 199 16 6 330 121 420 3.17e-12 67.8
MS.gene048934.t1 AT3G62830 25.664 339 199 16 6 330 121 420 3.17e-12 67.8

Find 98 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAAATAGTACCTGTCTT+AGG 0.297516 4.2:+4347778 None:intergenic
TCCTCTTCAGCCACTGTATA+CGG 0.316611 4.2:-4348580 MS.gene048934:CDS
TATGTCAAACAAAACCATTC+TGG 0.318353 4.2:-4350752 MS.gene048934:CDS
TACTATGACAACAACTTGAT+TGG 0.327471 4.2:-4349187 MS.gene048934:CDS
TCAGTGCAGGGGACCTCCTT+TGG 0.348278 4.2:+4348553 None:intergenic
AAGCAGCAAAAGAACTTAAC+TGG 0.349651 4.2:-4346946 MS.gene048934:CDS
AGGAAAGGGAACATCAGTTT+TGG 0.357526 4.2:-4347566 MS.gene048934:CDS
CTCCGATCAGCCTTTACAAT+TGG 0.364198 4.2:+4347007 None:intergenic
TACGGGCTTGCAGCTGATAA+AGG 0.374143 4.2:+4348523 None:intergenic
CGGTAACCTTTCCTTTCATA+AGG 0.388596 4.2:-4350587 MS.gene048934:intron
CAGATTCACCATAGCCATAA+GGG 0.392174 4.2:+4346652 None:intergenic
AACAAAACCATTCTGGTTAC+CGG 0.402604 4.2:-4350745 MS.gene048934:CDS
GAGGTTTATAACTTGGGAAC+AGG 0.410110 4.2:-4347586 MS.gene048934:CDS
CCACTAGGATGTGCACCAAC+GGG 0.426245 4.2:+4348251 None:intergenic
GATATCTACCGTTCTGATCC+AGG 0.432927 4.2:-4348305 MS.gene048934:CDS
TGTGCCGTGATCAATGGAAT+TGG 0.433769 4.2:-4346686 MS.gene048934:CDS
TCAGATTCACCATAGCCATA+AGG 0.446286 4.2:+4346651 None:intergenic
CATACCTTGGTTCGTCCATA+CGG 0.448422 4.2:+4348505 None:intergenic
CTTATGAAAGGAAAGGTTAC+CGG 0.450256 4.2:+4350588 None:intergenic
ACTGCAACTTGCTGAACAAA+AGG 0.454333 4.2:+4348185 None:intergenic
TTAGAAAATTCCAATTGTAA+AGG 0.455191 4.2:-4347017 MS.gene048934:intron
AAGTTACCTTCTTGCATCCA+TGG 0.460279 4.2:+4349134 None:intergenic
AATTGTTCTATTTGAAGTCA+TGG 0.463893 4.2:-4349161 MS.gene048934:CDS
ACAAAAGGCATGAGGTTGTT+GGG 0.466227 4.2:+4348200 None:intergenic
ACTATGACAACAACTTGATT+GGG 0.468116 4.2:-4349186 MS.gene048934:CDS
GAAGAAGCTGGAGGACTGTA+TGG 0.470215 4.2:+4350701 None:intergenic
AGGTTGTGAGGTTTATAACT+TGG 0.472015 4.2:-4347593 MS.gene048934:CDS
ACAGTCCTCCAGCTTCTTCT+CGG 0.478199 4.2:-4350697 MS.gene048934:CDS
TATAACTTGGGAACAGGAAA+GGG 0.479391 4.2:-4347580 MS.gene048934:CDS
GCACATCCTAGTGGTCATAT+TGG 0.480170 4.2:-4348242 MS.gene048934:CDS
AACAAAAGGCATGAGGTTGT+TGG 0.482853 4.2:+4348199 None:intergenic
TATAGCACAAGTGATGGAAC+TGG 0.488752 4.2:-4348125 MS.gene048934:CDS
ATGATATGTGCCGTGATCAA+TGG 0.495661 4.2:-4346692 MS.gene048934:CDS
GCCGATGTAACCGGCTCCAC+CGG 0.496013 4.2:+4350726 None:intergenic
TTATCAGCTGCAAGCCCGTA+TGG 0.498617 4.2:-4348520 MS.gene048934:CDS
CACATTGCAGTTAGACCTGC+GGG 0.500648 4.2:-4349455 MS.gene048934:intron
TGTATGGCTGCCGATGTAAC+CGG 0.504067 4.2:+4350717 None:intergenic
TTATAACTTGGGAACAGGAA+AGG 0.505732 4.2:-4347581 MS.gene048934:CDS
GTAAAGGCTGATCGGAGACC+AGG 0.507007 4.2:-4347001 MS.gene048934:CDS
CATGTTGTTGATTTAGCTGA+TGG 0.509630 4.2:-4347832 MS.gene048934:CDS
TAAAGGAAACTCTTCAGTGC+AGG 0.517803 4.2:+4348540 None:intergenic
ATATTTGAGAAGAATTATCA+AGG 0.525846 4.2:+4350647 None:intergenic
GGTTGTGAGGTTTATAACTT+GGG 0.526110 4.2:-4347592 MS.gene048934:CDS
ATTCTGGTTACCGGTGGAGC+CGG 0.529625 4.2:-4350736 MS.gene048934:CDS
TGTAACCGCCGAGAAGAAGC+TGG 0.530547 4.2:+4350689 None:intergenic
ATACCTTGGTTCGTCCATAC+GGG 0.541410 4.2:+4348506 None:intergenic
GTGCCGTGATCAATGGAATT+GGG 0.542969 4.2:-4346685 MS.gene048934:CDS
CAAGTCCATCTCTGTCCCGC+AGG 0.543353 4.2:+4349440 None:intergenic
AAGGTTACCGGCGAAATCAC+CGG 0.545925 4.2:+4350600 None:intergenic
ACCACTAGGATGTGCACCAA+CGG 0.547577 4.2:+4348250 None:intergenic
TTTGTTCAGCAAGTTGCAGT+TGG 0.550895 4.2:-4348182 MS.gene048934:CDS
ACCGGTGGAGCCGGTTACAT+CGG 0.553635 4.2:-4350727 MS.gene048934:CDS
TTCCAATTGTAAAGGCTGAT+CGG 0.556362 4.2:-4347009 MS.gene048934:CDS
GGCTCCACCGGTAACCAGAA+TGG 0.558207 4.2:+4350738 None:intergenic
CACTGTATACGGTTGGCCAA+AGG 0.562044 4.2:-4348569 MS.gene048934:CDS
TTAGACCTGCGGGACAGAGA+TGG 0.564284 4.2:-4349445 MS.gene048934:CDS
TAAACAACTTCAGCATCTCC+TGG 0.570331 4.2:+4346983 None:intergenic
AGTTACCTTCTTGCATCCAT+GGG 0.578547 4.2:+4349135 None:intergenic
ACAGATTATAGCACAAGTGA+TGG 0.581825 4.2:-4348131 MS.gene048934:CDS
ACCGTATACAGTGGCTGAAG+AGG 0.582934 4.2:+4348579 None:intergenic
CTTCAGCCACTGTATACGGT+TGG 0.587440 4.2:-4348576 MS.gene048934:CDS
AAAGGAAACTCTTCAGTGCA+GGG 0.590389 4.2:+4348541 None:intergenic
GGCTGCCCATGGATGCAAGA+AGG 0.591203 4.2:-4349140 MS.gene048934:intron
TTTGCTGGACTGAAAGCAGT+AGG 0.592924 4.2:-4349235 MS.gene048934:CDS
AAACTCGCCGGTGATTTCGC+CGG 0.593743 4.2:-4350607 MS.gene048934:CDS
CAACAACATGAATGTAATCA+CGG 0.594284 4.2:+4347845 None:intergenic
TTTGAAGTCATGGCTGCCCA+TGG 0.595050 4.2:-4349151 MS.gene048934:CDS
AAGCTAGATGATCCTAAGAC+AGG 0.595868 4.2:-4347790 MS.gene048934:intron
TTGTTGTCATAGTAGAGCAG+TGG 0.596053 4.2:+4349196 None:intergenic
TGTGCCGCGCACCTTATGAA+AGG 0.596057 4.2:+4350576 None:intergenic
GAGTTTCTTGACTCTGTCGA+TGG 0.600323 4.2:+4350624 None:intergenic
TTGAGATACTTCAACCCCGT+TGG 0.604257 4.2:-4348266 MS.gene048934:CDS
TCCTTGTGCAGGGCTAAACA+TGG 0.604867 4.2:-4346720 MS.gene048934:intron
TGTATACGGTTGGCCAAAGG+AGG 0.615492 4.2:-4348566 MS.gene048934:CDS
TAGCCCAATTCCATTGATCA+CGG 0.615843 4.2:+4346682 None:intergenic
GTCCTCCAGCTTCTTCTCGG+CGG 0.617014 4.2:-4350694 MS.gene048934:CDS
GACAGAGTCAAGAAACTCGC+CGG 0.617460 4.2:-4350619 MS.gene048934:CDS
TCTACCGTTCTGATCCAGGA+TGG 0.618503 4.2:-4348301 MS.gene048934:CDS
ATGTTGTTGATTTAGCTGAT+GGG 0.626123 4.2:-4347831 MS.gene048934:CDS
TCCTAGTGGTCATATTGGTG+AGG 0.630469 4.2:-4348237 MS.gene048934:CDS
CGCGCACCTTATGAAAGGAA+AGG 0.634737 4.2:+4350581 None:intergenic
CCCGTTGGTGCACATCCTAG+TGG 0.638263 4.2:-4348251 MS.gene048934:CDS
TCAGTCTGTTACCTTTCGAG+AGG 0.639537 4.2:+4347519 None:intergenic
CGGTTACAACACCGTCGTGG+TGG 0.648102 4.2:-4350674 MS.gene048934:CDS
TGTTGCACATACAGGTTGTG+AGG 0.655389 4.2:-4347605 MS.gene048934:intron
TCCTCACCAATATGACCACT+AGG 0.658255 4.2:+4348236 None:intergenic
TCACATTGCAGTTAGACCTG+CGG 0.664949 4.2:-4349456 MS.gene048934:intron
AAGGAAACTCTTCAGTGCAG+GGG 0.668924 4.2:+4348542 None:intergenic
AAAACCATTCTGGTTACCGG+TGG 0.670384 4.2:-4350742 MS.gene048934:CDS
CTTGCTGAACAAAAGGCATG+AGG 0.677336 4.2:+4348192 None:intergenic
CTTTGGCCAACCGTATACAG+TGG 0.681860 4.2:+4348570 None:intergenic
CACTAGGATGTGCACCAACG+GGG 0.689749 4.2:+4348252 None:intergenic
CGGCGGTTACAACACCGTCG+TGG 0.703410 4.2:-4350677 MS.gene048934:CDS
AAGCCCGTATGGACGAACCA+AGG 0.710697 4.2:-4348509 MS.gene048934:intron
ATCAAGGTTATCCACCACGA+CGG 0.726551 4.2:+4350663 None:intergenic
AACCGCCGAGAAGAAGCTGG+AGG 0.741411 4.2:+4350692 None:intergenic
CATATTGGTGAGGATCCTCG+CGG 0.752117 4.2:-4348227 MS.gene048934:CDS
AGGTTGTTGGGAATTCCGCG+AGG 0.771351 4.2:+4348212 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATGATTTTTTAAATATTA+TGG - chr4.2:4350117-4350136 MS.gene048934:intron 10.0%
!!! GATGATTTTTTAAATATTAT+GGG - chr4.2:4350118-4350137 MS.gene048934:intron 10.0%
!!! TATTTGAATTATTTTTTGTA+AGG - chr4.2:4347386-4347405 MS.gene048934:intron 10.0%
!! AAAACTTAAATAAGTGTTTA+TGG - chr4.2:4347330-4347349 MS.gene048934:intron 15.0%
!! AAACTTAAATAAGTGTTTAT+GGG - chr4.2:4347331-4347350 MS.gene048934:intron 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr4.2:4348495-4348514 MS.gene048934:intron 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr4.2:4348496-4348515 None:intergenic 15.0%
!! AGAAAAAATTATTATTGCAT+TGG - chr4.2:4348582-4348601 MS.gene048934:CDS 15.0%
!! AGAAGTAAAATAAAATATGT+CGG + chr4.2:4347919-4347938 None:intergenic 15.0%
!! GATATAATATTTGCAAAATT+TGG + chr4.2:4350587-4350606 None:intergenic 15.0%
!! TTAAAAAATCATCTATCTTA+GGG + chr4.2:4350111-4350130 None:intergenic 15.0%
!! TTAGTTAGTAAATAATGATT+TGG - chr4.2:4346900-4346919 MS.gene048934:intron 15.0%
!! TTTAAAAAATCATCTATCTT+AGG + chr4.2:4350112-4350131 None:intergenic 15.0%
!!! ATATTTAATAGTTTTTCACT+AGG - chr4.2:4347528-4347547 MS.gene048934:intron 15.0%
!!! ATTTTATAAATGTCATTTGA+TGG - chr4.2:4349953-4349972 MS.gene048934:intron 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG - chr4.2:4348622-4348641 MS.gene048934:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr4.2:4348519-4348538 MS.gene048934:CDS 15.0%
!!! TGTTTATTCAATTCTTTTTA+TGG - chr4.2:4350539-4350558 MS.gene048934:intron 15.0%
!!! TTTATTAGATTATTTTCAAG+TGG - chr4.2:4347023-4347042 MS.gene048934:intron 15.0%
!! AAACTAACCAATAGTTAATA+AGG + chr4.2:4348505-4348524 None:intergenic 20.0%
!! AAAGAATTGAATAAACAGAA+AGG + chr4.2:4350536-4350555 None:intergenic 20.0%
!! AAATATAAACAAGATTGCAA+AGG + chr4.2:4348977-4348996 None:intergenic 20.0%
!! AATATAAACAAGATTGCAAA+GGG + chr4.2:4348976-4348995 None:intergenic 20.0%
!! AATGATTAAAAATGAGAGTA+AGG + chr4.2:4349936-4349955 None:intergenic 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG - chr4.2:4348462-4348481 MS.gene048934:intron 20.0%
!! ATATACTATCAATTTCACAT+AGG + chr4.2:4347872-4347891 None:intergenic 20.0%
!! ATATTTGAGAAGAATTATCA+AGG + chr4.2:4346751-4346770 None:intergenic 20.0%
!! ATGATTAAAAATGAGAGTAA+GGG + chr4.2:4349935-4349954 None:intergenic 20.0%
!! GAGAAATAAAGAATTGAAAA+TGG + chr4.2:4346861-4346880 None:intergenic 20.0%
!! TACAATATTTATGAACTTAG+AGG + chr4.2:4347725-4347744 None:intergenic 20.0%
!! TCATCATCACAATAAAATAA+CGG + chr4.2:4347896-4347915 None:intergenic 20.0%
!! TTAGAAAATTCCAATTGTAA+AGG - chr4.2:4350378-4350397 MS.gene048934:intron 20.0%
!! TTATTCACAATGAATTATAG+AGG + chr4.2:4347815-4347834 None:intergenic 20.0%
!!! GTTTTACAGTGTTTTTTATT+GGG - chr4.2:4346999-4347018 MS.gene048934:CDS 20.0%
!!! TGTTTTACAGTGTTTTTTAT+TGG - chr4.2:4346998-4347017 MS.gene048934:CDS 20.0%
!!! TTATGGAAATTCAATGTTTT+TGG - chr4.2:4350556-4350575 MS.gene048934:intron 20.0%
!!! TTTATTCAGTCTATTCATTT+TGG - chr4.2:4349662-4349681 MS.gene048934:intron 20.0%
! AAAAGGGTAAAATTGAAAGA+AGG - chr4.2:4347054-4347073 MS.gene048934:intron 25.0%
! AAAGGGTAAAATTGAAAGAA+GGG - chr4.2:4347055-4347074 MS.gene048934:intron 25.0%
! AAATAATGTGAATAGTTTCC+TGG - chr4.2:4347834-4347853 MS.gene048934:CDS 25.0%
! AAATACAAAATCACCATGTT+CGG + chr4.2:4346966-4346985 None:intergenic 25.0%
! AACATAAATTTGTGAGGAAA+AGG + chr4.2:4350656-4350675 None:intergenic 25.0%
! ACATAAATTTGTGAGGAAAA+GGG + chr4.2:4350655-4350674 None:intergenic 25.0%
! ATATTATGGGATATCTAACA+AGG - chr4.2:4350131-4350150 MS.gene048934:intron 25.0%
! ATCAAAATAATCCAAATCGA+AGG + chr4.2:4349382-4349401 None:intergenic 25.0%
! GTTGTGTGTGAATAATAATT+GGG - chr4.2:4347129-4347148 MS.gene048934:intron 25.0%
! TAAGGGATAGCAAAATAAAA+AGG + chr4.2:4349918-4349937 None:intergenic 25.0%
! TATGACTAGAGAACTATTTA+GGG - chr4.2:4348909-4348928 MS.gene048934:intron 25.0%
! TCAAAATAATCCAAATCGAA+GGG + chr4.2:4349381-4349400 None:intergenic 25.0%
! TGTTGTGTGTGAATAATAAT+TGG - chr4.2:4347128-4347147 MS.gene048934:intron 25.0%
!! AAAACAACTCTCATTGATTA+TGG + chr4.2:4349733-4349752 None:intergenic 25.0%
!! AAACAACTCTCATTGATTAT+GGG + chr4.2:4349732-4349751 None:intergenic 25.0%
!! AATTGTTCTATTTGAAGTCA+TGG - chr4.2:4348234-4348253 MS.gene048934:CDS 25.0%
!! ATAAATCTTGTCTTTTTCTC+AGG - chr4.2:4349526-4349545 MS.gene048934:intron 25.0%
!! ATATTTTCTTCCACAAAGTA+AGG - chr4.2:4347983-4348002 MS.gene048934:intron 25.0%
!! ATTTTTACGTTCGATACTTT+TGG - chr4.2:4347631-4347650 MS.gene048934:intron 25.0%
!! TTAATAGTTTTTCACTAGGT+GGG - chr4.2:4347532-4347551 MS.gene048934:CDS 25.0%
!! TTCTTTCAATTTTACCCTTT+TGG + chr4.2:4347055-4347074 None:intergenic 25.0%
!! TTTAATAGTTTTTCACTAGG+TGG - chr4.2:4347531-4347550 MS.gene048934:CDS 25.0%
!!! AATGAGAGTTGTTTTTTCTT+TGG - chr4.2:4349738-4349757 MS.gene048934:intron 25.0%
!!! ATTGATTTTATCATCCGAAA+AGG - chr4.2:4347752-4347771 MS.gene048934:intron 25.0%
!!! ATTTTTTATTTTGCCGAACA+TGG - chr4.2:4346950-4346969 MS.gene048934:CDS 25.0%
!!! CTCTTTGAAATCTTTTTAAG+AGG + chr4.2:4347681-4347700 None:intergenic 25.0%
!!! CTTTAAGTTGATATAGCATA+AGG - chr4.2:4349979-4349998 MS.gene048934:intron 25.0%
!!! GATTTACTGAAATTTTGACT+TGG - chr4.2:4349318-4349337 MS.gene048934:intron 25.0%
AAAGCATGTTATGTACTTGT+CGG + chr4.2:4347179-4347198 None:intergenic 30.0%
AAAGGTAGATCGTAACAAAT+GGG + chr4.2:4349446-4349465 None:intergenic 30.0%
AAATTTATGTTCCTTGTGCA+GGG - chr4.2:4350665-4350684 MS.gene048934:CDS 30.0%
ACAAGGAACATAAATTTGTG+AGG + chr4.2:4350662-4350681 None:intergenic 30.0%
ACTATGACAACAACTTGATT+GGG - chr4.2:4348209-4348228 MS.gene048934:CDS 30.0%
AGATCCTCAAAAGAATTCAA+AGG + chr4.2:4349464-4349483 None:intergenic 30.0%
ATATCTTCTGATCAGAAATG+TGG - chr4.2:4350602-4350621 MS.gene048934:CDS 30.0%
ATGAATTATAGAGGAATGGA+AGG + chr4.2:4347806-4347825 None:intergenic 30.0%
CAACAACATGAATGTAATCA+CGG + chr4.2:4349553-4349572 None:intergenic 30.0%
CACAATGAATTATAGAGGAA+TGG + chr4.2:4347810-4347829 None:intergenic 30.0%
CATAAATTTGTGAGGAAAAG+GGG + chr4.2:4350654-4350673 None:intergenic 30.0%
GTATGACTAGAGAACTATTT+AGG - chr4.2:4348908-4348927 MS.gene048934:intron 30.0%
TAAGATCCTCAAAAGCTTAT+CGG + chr4.2:4349502-4349521 None:intergenic 30.0%
TACTATGACAACAACTTGAT+TGG - chr4.2:4348208-4348227 MS.gene048934:CDS 30.0%
TATCTTCTGATCAGAAATGT+GGG - chr4.2:4350603-4350622 MS.gene048934:CDS 30.0%
TTAAGGTAGCAGTATTATCA+GGG + chr4.2:4348716-4348735 None:intergenic 30.0%
TTCTTCAATGTATAGCTGAA+AGG + chr4.2:4349061-4349080 None:intergenic 30.0%
TTTACTTACAACTCACGTAA+TGG + chr4.2:4350066-4350085 None:intergenic 30.0%
TTTCAAATAGTACCTGTCTT+AGG + chr4.2:4349620-4349639 None:intergenic 30.0%
TTTGTCAATATGTTCAGCTA+TGG + chr4.2:4350285-4350304 None:intergenic 30.0%
! CATAGGTAACATATTTTTCC+AGG + chr4.2:4347855-4347874 None:intergenic 30.0%
! GAACTATTTAGGGTACTTAT+CGG - chr4.2:4348919-4348938 MS.gene048934:intron 30.0%
! TCTACCTTTGAATTCTTTTG+AGG - chr4.2:4349457-4349476 MS.gene048934:intron 30.0%
! TTCAATTTTACCCTTTTGGT+TGG + chr4.2:4347051-4347070 None:intergenic 30.0%
! TTTAAGGTAGCAGTATTATC+AGG + chr4.2:4348717-4348736 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr4.2:4348413-4348432 None:intergenic 30.0%
!! ATGTTGTTGATTTAGCTGAT+GGG - chr4.2:4349564-4349583 MS.gene048934:intron 30.0%
!! TCAATTTTACCCTTTTGGTT+GGG + chr4.2:4347050-4347069 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr4.2:4348414-4348433 MS.gene048934:intron 30.0%
!!! TTTTTTCCGATAAGCTTTTG+AGG - chr4.2:4349493-4349512 MS.gene048934:intron 30.0%
!!! TTTTTTCTTTGGTGCGTTTT+TGG - chr4.2:4349749-4349768 MS.gene048934:intron 30.0%
AACTCTCGTTAGATTCTGAT+AGG + chr4.2:4349029-4349048 None:intergenic 35.0%
AACTTAACTGGAAGTAAGTG+TGG - chr4.2:4350461-4350480 MS.gene048934:intron 35.0%
AAGCAGCAAAAGAACTTAAC+TGG - chr4.2:4350449-4350468 MS.gene048934:intron 35.0%
AAGCATGTTATGTACTTGTC+GGG + chr4.2:4347178-4347197 None:intergenic 35.0%
ACAGATTATAGCACAAGTGA+TGG - chr4.2:4349264-4349283 MS.gene048934:intron 35.0%
AGGTTGTGAGGTTTATAACT+TGG - chr4.2:4349802-4349821 MS.gene048934:intron 35.0%
ATAGACTGAGTACTTGTAGT+GGG - chr4.2:4348340-4348359 MS.gene048934:intron 35.0%
ATAGTTCTCTAGTCATACCT+TGG + chr4.2:4348906-4348925 None:intergenic 35.0%
ATGACAGCATCAAATCTGAA+AGG + chr4.2:4348136-4348155 None:intergenic 35.0%
CAAAGGTAGATCGTAACAAA+TGG + chr4.2:4349447-4349466 None:intergenic 35.0%
CAAATTTATGTTCCTTGTGC+AGG - chr4.2:4350664-4350683 MS.gene048934:CDS 35.0%
CAATCTCACAAGACACTTTA+AGG + chr4.2:4348733-4348752 None:intergenic 35.0%
CTTATGAAAGGAAAGGTTAC+CGG + chr4.2:4346810-4346829 None:intergenic 35.0%
GATAATAATGCTGTCACAGT+TGG - chr4.2:4349399-4349418 MS.gene048934:intron 35.0%
GGTTGTGAGGTTTATAACTT+GGG - chr4.2:4349803-4349822 MS.gene048934:intron 35.0%
GTAGTGTGCTGAGTATTAAT+TGG - chr4.2:4348544-4348563 MS.gene048934:CDS 35.0%
GTTGATATAGCATAAGGACT+TGG - chr4.2:4349985-4350004 MS.gene048934:intron 35.0%
TAAAAGCCCCAATCTTCTAT+CGG + chr4.2:4347604-4347623 None:intergenic 35.0%
TATAACTTGGGAACAGGAAA+GGG - chr4.2:4349815-4349834 MS.gene048934:intron 35.0%
TATAGACTGAGTACTTGTAG+TGG - chr4.2:4348339-4348358 MS.gene048934:intron 35.0%
TATCATCCGAAAAGGATTAG+TGG - chr4.2:4347760-4347779 MS.gene048934:intron 35.0%
TATGCACAATCCTTACTTTG+TGG + chr4.2:4347996-4348015 None:intergenic 35.0%
TCACCAAAAAAAAGCCAGAT+TGG + chr4.2:4347243-4347262 None:intergenic 35.0%
TGTGCTGAGTATTAATTGGA+GGG - chr4.2:4348548-4348567 MS.gene048934:CDS 35.0%
TTATAACTTGGGAACAGGAA+AGG - chr4.2:4349814-4349833 MS.gene048934:intron 35.0%
TTATGTGATGTTGCACATAC+AGG - chr4.2:4349782-4349801 MS.gene048934:intron 35.0%
TTCCAATTGTAAAGGCTGAT+CGG - chr4.2:4350386-4350405 MS.gene048934:intron 35.0%
TTTAAGTCCTGAATCTTGCA+GGG - chr4.2:4348293-4348312 MS.gene048934:CDS 35.0%
! AACAAAACCATTCTGGTTAC+CGG - chr4.2:4346650-4346669 MS.gene048934:CDS 35.0%
! CTTAAAGTGTCTTGTGAGAT+TGG - chr4.2:4348731-4348750 MS.gene048934:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr4.2:4348648-4348667 MS.gene048934:intron 35.0%
!! ATTGTGCCACTAATCCTTTT+CGG + chr4.2:4347769-4347788 None:intergenic 35.0%
!! CATGTTGTTGATTTAGCTGA+TGG - chr4.2:4349563-4349582 MS.gene048934:intron 35.0%
!! GAAAGAAGGGTATTATTCCT+GGG - chr4.2:4347068-4347087 MS.gene048934:intron 35.0%
!! TGAAAGAAGGGTATTATTCC+TGG - chr4.2:4347067-4347086 MS.gene048934:intron 35.0%
!!! AACAGTGTTATTTTCCATCC+TGG + chr4.2:4349111-4349130 None:intergenic 35.0%
!!! GATCCAATCTGGCTTTTTTT+TGG - chr4.2:4347237-4347256 MS.gene048934:intron 35.0%
AAAGGAAACTCTTCAGTGCA+GGG + chr4.2:4348857-4348876 None:intergenic 40.0%
AAGCTAGATGATCCTAAGAC+AGG - chr4.2:4349605-4349624 MS.gene048934:intron 40.0%
AAGTTACCTTCTTGCATCCA+TGG + chr4.2:4348264-4348283 None:intergenic 40.0%
ACAACATGTGCAAAATGCGT+CGG - chr4.2:4350218-4350237 MS.gene048934:intron 40.0%
ACAAGGGAAACTTGTATGTG+TGG - chr4.2:4347556-4347575 MS.gene048934:CDS 40.0%
ACTTATCGGATACTTGGGTA+GGG - chr4.2:4348933-4348952 MS.gene048934:intron 40.0%
AGCAAAAACCCTTATGGCTA+TGG - chr4.2:4350735-4350754 MS.gene048934:CDS 40.0%
AGCTGAGTCTGTTTCACAAT+TGG - chr4.2:4347152-4347171 MS.gene048934:intron 40.0%
AGTACTCAGTCTATATGACC+CGG + chr4.2:4348334-4348353 None:intergenic 40.0%
AGTTACCTTCTTGCATCCAT+GGG + chr4.2:4348263-4348282 None:intergenic 40.0%
ATAGAGGAATGGAAGGCAAA+CGG + chr4.2:4347799-4347818 None:intergenic 40.0%
ATGATATGTGCCGTGATCAA+TGG - chr4.2:4350703-4350722 MS.gene048934:CDS 40.0%
CAATGGTTGTGAACTGATGT+TGG - chr4.2:4349703-4349722 MS.gene048934:intron 40.0%
CAGATTCACCATAGCCATAA+GGG + chr4.2:4350746-4350765 None:intergenic 40.0%
CGGTAACCTTTCCTTTCATA+AGG - chr4.2:4346808-4346827 MS.gene048934:intron 40.0%
CGTTACTACTAGATCCAATC+TGG - chr4.2:4347226-4347245 MS.gene048934:intron 40.0%
CTTTAAGTCCTGAATCTTGC+AGG - chr4.2:4348292-4348311 MS.gene048934:CDS 40.0%
GAGGTTTATAACTTGGGAAC+AGG - chr4.2:4349809-4349828 MS.gene048934:intron 40.0%
GTGTGCTGAGTATTAATTGG+AGG - chr4.2:4348547-4348566 MS.gene048934:CDS 40.0%
TAAACAACTTCAGCATCTCC+TGG + chr4.2:4350415-4350434 None:intergenic 40.0%
TAAAGGAAACTCTTCAGTGC+AGG + chr4.2:4348858-4348877 None:intergenic 40.0%
TACTTATCGGATACTTGGGT+AGG - chr4.2:4348932-4348951 MS.gene048934:intron 40.0%
TAGCCCAATTCCATTGATCA+CGG + chr4.2:4350716-4350735 None:intergenic 40.0%
TCAGATTCACCATAGCCATA+AGG + chr4.2:4350747-4350766 None:intergenic 40.0%
TCCAAATCGAAGGGAAATAG+TGG + chr4.2:4349372-4349391 None:intergenic 40.0%
TCCACTATTTCCCTTCGATT+TGG - chr4.2:4349368-4349387 MS.gene048934:intron 40.0%
TTGTTGTCATAGTAGAGCAG+TGG + chr4.2:4348202-4348221 None:intergenic 40.0%
TTTGTTCAGCAAGTTGCAGT+TGG - chr4.2:4349213-4349232 MS.gene048934:CDS 40.0%
! AACAAAAGGCATGAGGTTGT+TGG + chr4.2:4349199-4349218 None:intergenic 40.0%
! ACAAAAGGCATGAGGTTGTT+GGG + chr4.2:4349198-4349217 None:intergenic 40.0%
! AGGAAAGGGAACATCAGTTT+TGG - chr4.2:4349829-4349848 MS.gene048934:intron 40.0%
! AGGGTACTTATCGGATACTT+GGG - chr4.2:4348928-4348947 MS.gene048934:intron 40.0%
! GATGCTGTCATACATTTTGC+TGG - chr4.2:4348145-4348164 MS.gene048934:CDS 40.0%
! GATGGTTACAGCTTTTGAAC+AGG - chr4.2:4349853-4349872 MS.gene048934:intron 40.0%
! TAGGGTACTTATCGGATACT+TGG - chr4.2:4348927-4348946 MS.gene048934:intron 40.0%
! TATAGCACAAGTGATGGAAC+TGG - chr4.2:4349270-4349289 MS.gene048934:intron 40.0%
! TTTTCACTAGGTGGGTACAA+GGG - chr4.2:4347540-4347559 MS.gene048934:CDS 40.0%
! TTTTCCATCCTGGATCAGAA+CGG + chr4.2:4349101-4349120 None:intergenic 40.0%
! TTTTTCACTAGGTGGGTACA+AGG - chr4.2:4347539-4347558 MS.gene048934:CDS 40.0%
!! AAGGGTATTATTCCTGGGAT+GGG - chr4.2:4347073-4347092 MS.gene048934:intron 40.0%
!! ACTGCAACTTGCTGAACAAA+AGG + chr4.2:4349213-4349232 None:intergenic 40.0%
!! CATTTTGGTAGACTCCTTGA+CGG - chr4.2:4349677-4349696 MS.gene048934:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr4.2:4348652-4348671 MS.gene048934:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr4.2:4348671-4348652 None:intergenic 40.0%
!!! TTTTGGTTTCCTAGCATCAG+AGG - chr4.2:4347648-4347667 MS.gene048934:intron 40.0%
AAGGAAACTCTTCAGTGCAG+GGG + chr4.2:4348856-4348875 None:intergenic 45.0%
ATCAAGGTTATCCACCACGA+CGG + chr4.2:4346735-4346754 None:intergenic 45.0%
CCCAATCTTCTATCGGACAA+GGG + chr4.2:4347597-4347616 None:intergenic 45.0%
CCCTTGTCCGATAGAAGATT+GGG - chr4.2:4347594-4347613 MS.gene048934:CDS 45.0%
CCTTGTCCGATAGAAGATTG+GGG - chr4.2:4347595-4347614 MS.gene048934:intron 45.0%
CTCCGATCAGCCTTTACAAT+TGG + chr4.2:4350391-4350410 None:intergenic 45.0%
CTTGTATGTGTGGACATGAC+TGG - chr4.2:4347566-4347585 MS.gene048934:CDS 45.0%
CTTTCCTTTCATAAGGTGCG+CGG - chr4.2:4346815-4346834 MS.gene048934:intron 45.0%
GAGTTTCTTGACTCTGTCGA+TGG + chr4.2:4346774-4346793 None:intergenic 45.0%
GATATCTACCGTTCTGATCC+AGG - chr4.2:4349090-4349109 MS.gene048934:intron 45.0%
GCACATCCTAGTGGTCATAT+TGG - chr4.2:4349153-4349172 MS.gene048934:CDS 45.0%
GGGAATTACGCATGTAAGCA+TGG + chr4.2:4349426-4349445 None:intergenic 45.0%
GTGCCGTGATCAATGGAATT+GGG - chr4.2:4350710-4350729 MS.gene048934:CDS 45.0%
TCAAGTGGACCCAACCAAAA+GGG - chr4.2:4347038-4347057 MS.gene048934:intron 45.0%
TCACATTGCAGTTAGACCTG+CGG - chr4.2:4347939-4347958 MS.gene048934:intron 45.0%
TCAGTCTGTTACCTTTCGAG+AGG + chr4.2:4349879-4349898 None:intergenic 45.0%
TCCCTTGTCCGATAGAAGAT+TGG - chr4.2:4347593-4347612 MS.gene048934:CDS 45.0%
TCCTAGTGGTCATATTGGTG+AGG - chr4.2:4349158-4349177 MS.gene048934:CDS 45.0%
TCCTCACCAATATGACCACT+AGG + chr4.2:4349162-4349181 None:intergenic 45.0%
TCCTCTTCAGCCACTGTATA+CGG - chr4.2:4348815-4348834 MS.gene048934:intron 45.0%
TGTGCCGTGATCAATGGAAT+TGG - chr4.2:4350709-4350728 MS.gene048934:CDS 45.0%
TGTTGCACATACAGGTTGTG+AGG - chr4.2:4349790-4349809 MS.gene048934:intron 45.0%
TTCAAGTGGACCCAACCAAA+AGG - chr4.2:4347037-4347056 MS.gene048934:intron 45.0%
TTGAGATACTTCAACCCCGT+TGG - chr4.2:4349129-4349148 MS.gene048934:intron 45.0%
TTTGCTGGACTGAAAGCAGT+AGG - chr4.2:4348160-4348179 MS.gene048934:CDS 45.0%
! AAAACCATTCTGGTTACCGG+TGG - chr4.2:4346653-4346672 MS.gene048934:CDS 45.0%
! ATACCTTGGTTCGTCCATAC+GGG + chr4.2:4348892-4348911 None:intergenic 45.0%
! CATACCTTGGTTCGTCCATA+CGG + chr4.2:4348893-4348912 None:intergenic 45.0%
! CTTGCTGAACAAAAGGCATG+AGG + chr4.2:4349206-4349225 None:intergenic 45.0%
! TTTTGAACAGGCCTCTCGAA+AGG - chr4.2:4349865-4349884 MS.gene048934:intron 45.0%
!! CGCTCTGCATTGACAGTTTT+TGG - chr4.2:4349240-4349259 MS.gene048934:CDS 45.0%
!! GAAGGGTATTATTCCTGGGA+TGG - chr4.2:4347072-4347091 MS.gene048934:intron 45.0%
!! TGGGCTAGCAAAAACCCTTA+TGG - chr4.2:4350729-4350748 MS.gene048934:CDS 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr4.2:4348651-4348670 MS.gene048934:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr4.2:4348670-4348651 None:intergenic 45.0%
!!! GGGAACATCAGTTTTGGAGA+TGG - chr4.2:4349835-4349854 MS.gene048934:intron 45.0%
!!! AATATATTTTTTATTCAATA+AGG + chr4.2:4347513-4347532 None:intergenic 5.0%
AAGGTTACCGGCGAAATCAC+CGG + chr4.2:4346798-4346817 None:intergenic 50.0%
ACAGTCCTCCAGCTTCTTCT+CGG - chr4.2:4346698-4346717 MS.gene048934:CDS 50.0%
ACCACTAGGATGTGCACCAA+CGG + chr4.2:4349148-4349167 None:intergenic 50.0%
ACCGTATACAGTGGCTGAAG+AGG + chr4.2:4348819-4348838 None:intergenic 50.0%
AGACTCCTTGACGGTAGCAA+TGG - chr4.2:4349686-4349705 MS.gene048934:intron 50.0%
CACAACCATTGCTACCGTCA+AGG + chr4.2:4349694-4349713 None:intergenic 50.0%
CACATTGCAGTTAGACCTGC+GGG - chr4.2:4347940-4347959 MS.gene048934:intron 50.0%
CATATTGGTGAGGATCCTCG+CGG - chr4.2:4349168-4349187 MS.gene048934:CDS 50.0%
CCCCAATCTTCTATCGGACA+AGG + chr4.2:4347598-4347617 None:intergenic 50.0%
CGCGCACCTTATGAAAGGAA+AGG + chr4.2:4346817-4346836 None:intergenic 50.0%
CTTCAGCCACTGTATACGGT+TGG - chr4.2:4348819-4348838 MS.gene048934:intron 50.0%
CTTGCAGGGTCTCCAAATGT+CGG - chr4.2:4348307-4348326 MS.gene048934:CDS 50.0%
CTTTGGCCAACCGTATACAG+TGG + chr4.2:4348828-4348847 None:intergenic 50.0%
GAAGAAGCTGGAGGACTGTA+TGG + chr4.2:4346697-4346716 None:intergenic 50.0%
GACAGAGTCAAGAAACTCGC+CGG - chr4.2:4346776-4346795 MS.gene048934:intron 50.0%
TACGGGCTTGCAGCTGATAA+AGG + chr4.2:4348875-4348894 None:intergenic 50.0%
TATTCCTGGGATGGGAGAGA+CGG - chr4.2:4347081-4347100 MS.gene048934:intron 50.0%
TCCTTGTGCAGGGCTAAACA+TGG - chr4.2:4350675-4350694 MS.gene048934:CDS 50.0%
TCTACCGTTCTGATCCAGGA+TGG - chr4.2:4349094-4349113 MS.gene048934:intron 50.0%
TGTATGGCTGCCGATGTAAC+CGG + chr4.2:4346681-4346700 None:intergenic 50.0%
TTATCAGCTGCAAGCCCGTA+TGG - chr4.2:4348875-4348894 MS.gene048934:intron 50.0%
TTGCAGGGTCTCCAAATGTC+GGG - chr4.2:4348308-4348327 MS.gene048934:CDS 50.0%
TTGGAGACCCTGCAAGATTC+AGG + chr4.2:4348303-4348322 None:intergenic 50.0%
! CACTGTATACGGTTGGCCAA+AGG - chr4.2:4348826-4348845 MS.gene048934:intron 50.0%
! TGTATACGGTTGGCCAAAGG+AGG - chr4.2:4348829-4348848 MS.gene048934:intron 50.0%
! TTTGAAGTCATGGCTGCCCA+TGG - chr4.2:4348244-4348263 MS.gene048934:CDS 50.0%
AAACTCGCCGGTGATTTCGC+CGG - chr4.2:4346788-4346807 MS.gene048934:intron 55.0%
AAGCCCGTATGGACGAACCA+AGG - chr4.2:4348886-4348905 MS.gene048934:intron 55.0%
AGGTTGTTGGGAATTCCGCG+AGG + chr4.2:4349186-4349205 None:intergenic 55.0%
ATATGACCCGGCCCGACATT+TGG + chr4.2:4348322-4348341 None:intergenic 55.0%
CACTAGGATGTGCACCAACG+GGG + chr4.2:4349146-4349165 None:intergenic 55.0%
CCACTAGGATGTGCACCAAC+GGG + chr4.2:4349147-4349166 None:intergenic 55.0%
GCCATGTTTAGCCCTGCACA+AGG + chr4.2:4350679-4350698 None:intergenic 55.0%
GGTCATCGACCTCTGATGCT+AGG + chr4.2:4347660-4347679 None:intergenic 55.0%
GTAAAGGCTGATCGGAGACC+AGG - chr4.2:4350394-4350413 MS.gene048934:intron 55.0%
TGTAACCGCCGAGAAGAAGC+TGG + chr4.2:4346709-4346728 None:intergenic 55.0%
TGTGCCGCGCACCTTATGAA+AGG + chr4.2:4346822-4346841 None:intergenic 55.0%
TTAGACCTGCGGGACAGAGA+TGG - chr4.2:4347950-4347969 MS.gene048934:intron 55.0%
! ATTCTGGTTACCGGTGGAGC+CGG - chr4.2:4346659-4346678 MS.gene048934:CDS 55.0%
AACCGCCGAGAAGAAGCTGG+AGG + chr4.2:4346706-4346725 None:intergenic 60.0%
ACCGGTGGAGCCGGTTACAT+CGG - chr4.2:4346668-4346687 MS.gene048934:CDS 60.0%
AGGGTCTCCAAATGTCGGGC+CGG - chr4.2:4348312-4348331 MS.gene048934:CDS 60.0%
CAAGTCCATCTCTGTCCCGC+AGG + chr4.2:4347958-4347977 None:intergenic 60.0%
CCCGTTGGTGCACATCCTAG+TGG - chr4.2:4349144-4349163 MS.gene048934:CDS 60.0%
CGGTTACAACACCGTCGTGG+TGG - chr4.2:4346721-4346740 MS.gene048934:intron 60.0%
GGCTCCACCGGTAACCAGAA+TGG + chr4.2:4346660-4346679 None:intergenic 60.0%
GGCTGCCCATGGATGCAAGA+AGG - chr4.2:4348255-4348274 MS.gene048934:CDS 60.0%
GTCCTCCAGCTTCTTCTCGG+CGG - chr4.2:4346701-4346720 MS.gene048934:CDS 60.0%
TCAGTGCAGGGGACCTCCTT+TGG + chr4.2:4348845-4348864 None:intergenic 60.0%
CGGCGGTTACAACACCGTCG+TGG - chr4.2:4346718-4346737 MS.gene048934:intron 65.0%
GGGTCTCCAAATGTCGGGCC+GGG - chr4.2:4348313-4348332 MS.gene048934:CDS 65.0%
TCCTGGGATGGGAGAGACGG+TGG - chr4.2:4347084-4347103 MS.gene048934:intron 65.0%
! GCCGATGTAACCGGCTCCAC+CGG + chr4.2:4346672-4346691 None:intergenic 65.0%
GCCACCGTCTCTCCCATCCC+AGG + chr4.2:4347088-4347107 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 4346644 4350773 4346644 ID=MS.gene048934
chr4.2 mRNA 4346644 4350773 4346644 ID=MS.gene048934.t1;Parent=MS.gene048934
chr4.2 exon 4350588 4350773 4350588 ID=MS.gene048934.t1.exon1;Parent=MS.gene048934.t1
chr4.2 CDS 4350588 4350773 4350588 ID=cds.MS.gene048934.t1;Parent=MS.gene048934.t1
chr4.2 exon 4349418 4349467 4349418 ID=MS.gene048934.t1.exon2;Parent=MS.gene048934.t1
chr4.2 CDS 4349418 4349467 4349418 ID=cds.MS.gene048934.t1;Parent=MS.gene048934.t1
chr4.2 exon 4349141 4349276 4349141 ID=MS.gene048934.t1.exon3;Parent=MS.gene048934.t1
chr4.2 CDS 4349141 4349276 4349141 ID=cds.MS.gene048934.t1;Parent=MS.gene048934.t1
chr4.2 exon 4348510 4348611 4348510 ID=MS.gene048934.t1.exon4;Parent=MS.gene048934.t1
chr4.2 CDS 4348510 4348611 4348510 ID=cds.MS.gene048934.t1;Parent=MS.gene048934.t1
chr4.2 exon 4348124 4348351 4348124 ID=MS.gene048934.t1.exon5;Parent=MS.gene048934.t1
chr4.2 CDS 4348124 4348351 4348124 ID=cds.MS.gene048934.t1;Parent=MS.gene048934.t1
chr4.2 exon 4347791 4347869 4347791 ID=MS.gene048934.t1.exon6;Parent=MS.gene048934.t1
chr4.2 CDS 4347791 4347869 4347791 ID=cds.MS.gene048934.t1;Parent=MS.gene048934.t1
chr4.2 exon 4347531 4347613 4347531 ID=MS.gene048934.t1.exon7;Parent=MS.gene048934.t1
chr4.2 CDS 4347531 4347613 4347531 ID=cds.MS.gene048934.t1;Parent=MS.gene048934.t1
chr4.2 exon 4346944 4347035 4346944 ID=MS.gene048934.t1.exon8;Parent=MS.gene048934.t1
chr4.2 CDS 4346944 4347035 4346944 ID=cds.MS.gene048934.t1;Parent=MS.gene048934.t1
chr4.2 exon 4346644 4346731 4346644 ID=MS.gene048934.t1.exon9;Parent=MS.gene048934.t1
chr4.2 CDS 4346644 4346731 4346644 ID=cds.MS.gene048934.t1;Parent=MS.gene048934.t1
Gene Sequence

>MS.gene048934

ATGTCAAACAAAACCATTCTGGTTACCGGTGGAGCCGGTTACATCGGCAGCCATACAGTCCTCCAGCTTCTTCTCGGCGGTTACAACACCGTCGTGGTGGATAACCTTGATAATTCTTCTCAAATATCCATCGACAGAGTCAAGAAACTCGCCGGTGATTTCGCCGGTAACCTTTCCTTTCATAAGGTGCGCGGCACATTCTCTCGTTGCTCTACCATTTTCAATTCTTTATTTCTCTCTGTCTGTTTTTAATTAATTAGTTAGTAAATAATGATTTGGTTGTACTGTCTTTATGATTTGATAATTATTTTTTATTTTGCCGAACATGGTGATTTTGTATTTAAAAAAAAAAAATGTTTTACAGTGTTTTTTATTGGGTTTTATTAGATTATTTTCAAGTGGACCCAACCAAAAGGGTAAAATTGAAAGAAGGGTATTATTCCTGGGATGGGAGAGACGGTGGCAGATTCGAATAATATGTGTGTGTTGTGTGTGAATAATAATTGGGAGCTGAGTCTGTTTCACAATTGGCCCGACAAGTACATAACATGCTTTTTGATGTGATGTTTGTTTTGTTTATTTCGTTACTACTAGATCCAATCTGGCTTTTTTTTGGTGATATTGCAATTTTGTTGAAATTCTAAACTGTACTGTAGTTTTCAAAGTGAATTTGAAAAAAAAAAAAAAAAACTTAAATAAGTGTTTATGGGATAAATAAATAATTATTGTATTATTCAAAATGTATTTGAATTATTTTTTGTAAGGAGTTGAAAAAAATAGCTTATTTTTTGACGTTTCATAAAAATAGCTGAAAACAACATATAAATTACAATATTAGCTGCAATAGACATTGATAAAGTATTTCACCTTATTGAATAAAAAATATATTTAATAGTTTTTCACTAGGTGGGTACAAGGGAAACTTGTATGTGTGGACATGACTGGTTTCTCCCTTGTCCGATAGAAGATTGGGGCTTTTATAAATTCATTTTTACGTTCGATACTTTTGGTTTCCTAGCATCAGAGGTCGATGACCTCTTAAAAAGATTTCAAAGAGTCACGCATAAAAATATCATGTCCTCTAAGTTCATAAATATTGTATTTAAGAATTGATTTTATCATCCGAAAAGGATTAGTGGCACAATTTGTTGTCCGTTTGCCTTCCATTCCTCTATAATTCATTGTGAATAAAATAATGTGAATAGTTTCCTGGAAAAATATGTTACCTATGTGAAATTGATAGTATATACCGTTATTTTATTGTGATGATGACCGACATATTTTATTTTACTTCTTCACATTGCAGTTAGACCTGCGGGACAGAGATGGACTTGAGAAAATATTTTCTTCCACAAAGTAAGGATTGTGCATAAGCTTTTGTGATTTTTCTTTTATACAAAAGATTGCACACATTTCAATTTCAAGTTCTCTTGCAATTTCATTTGATCACTGATTTATAAATGTTTGATGTATATGTATATGTATATTTCCTTTCAGATTTGATGCTGTCATACATTTTGCTGGACTGAAAGCAGTAGGTGAAAGTGTGCAGAAACCACTGCTCTACTATGACAACAACTTGATTGGGACAATTGTTCTATTTGAAGTCATGGCTGCCCATGGATGCAAGAAGGTAACTTCATTTTAGCTTTAAGTCCTGAATCTTGCAGGGTCTCCAAATGTCGGGCCGGGTCATATAGACTGAGTACTTGTAGTGGGAAATGATTCAAAAGATTCAGAAGTTTCATCATAAGATACTACTCCCTCCGTTTCAAAATGAGTGTCGTTTTAGGTGTTTACACACATATTAAGAAATGCAATGATTAAAAGAAAGAGAATGGTTATTTTACCAAATTATCCTTATTAACTATTGGTTAGTTTTAAAAGTAATACTTTGGAAGTAGTGTGCTGAGTATTAATTGGAGGGTACAATTGAAAAGAAAAAATTATTATTGCATTGGAAACTGAAAGTGACATTCATTTTGAAACAATTTTTTTTGGCTAAAGCGACACTCATTTTGAAACGGAGGGAGTATAAGATATAGTCTACATATTTTCTTCTTCTAGTGCCCTGATAATACTGCTACCTTAAAGTGTCTTGTGAGATTGGTTGTTGCGATTTTGTTACTTAACATGATTCTGTATTTCTTGATTGATTTCAGCTTGTGTTCTCCTCTTCAGCCACTGTATACGGTTGGCCAAAGGAGGTCCCCTGCACTGAAGAGTTTCCTTTATCAGCTGCAAGCCCGTATGGACGAACCAAGGTATGACTAGAGAACTATTTAGGGTACTTATCGGATACTTGGGTAGGGATAGTGAAACAAGAATTCCCTTTGCAATCTTGTTTATATTTTAATTGTATATTACAGATTACAGATGTATCCTATCAGAATCTAACGAGAGTTTTTTTTTTTCCTTTCAGCTATACATTGAAGAAATTTGTCGTGATATCTACCGTTCTGATCCAGGATGGAAAATAACACTGTTGAGATACTTCAACCCCGTTGGTGCACATCCTAGTGGTCATATTGGTGAGGATCCTCGCGGAATTCCCAACAACCTCATGCCTTTTGTTCAGCAAGTTGCAGTTGGCAGACGCTCTGCATTGACAGTTTTTGGAACAGATTATAGCACAAGTGATGGAACTGGAGTATGTTTTCTTTGTTCTTGACTTGATTTACTGAAATTTTGACTTGGAAAGTTGCATGCTAAGCTCACACACTATCCACTATTTCCCTTCGATTTGGATTATTTTGATAATAATGCTGTCACAGTTGGTCCATGCTTACATGCGTAATTCCCATTTGTTACGATCTACCTTTGAATTCTTTTGAGGATCTTACATTTTTTTTTTTCCGATAAGCTTTTGAGGATCTTACATGATAAATCTTGTCTTTTTCTCAGGTCCGTGATTACATTCATGTTGTTGATTTAGCTGATGGGCACATTGCTGCATTGTGTAAGCTAGATGATCCTAAGACAGGTACTATTTGAAATTTGATCAAATTCTTCTAATAATTTATTCAGTCTATTCATTTTGGTAGACTCCTTGACGGTAGCAATGGTTGTGAACTGATGTTGGATTCCCATAATCAATGAGAGTTGTTTTTTCTTTGGTGCGTTTTTGGATTTTCACTTTTATGTGATGTTGCACATACAGGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTACAGCTTTTGAACAGGCCTCTCGAAAGGTAACAGACTGATGATTCTATTTATGATCCTTTTTATTTTGCTATCCCTTACTCTCATTTTTAATCATTTTATAAATGTCATTTGATGGTCTCTTTAAGTTGATATAGCATAAGGACTTGGCTTAGTGTTAAGATAATCATTTATGATAGCTCTTAAAGTTGTGTTCAACTTATTTCCATTACGTGAGTTGTAAGTAAACTATAAAAATCTTTCACTTTGACCCTAAGATAGATGATTTTTTAAATATTATGGGATATCTAACAAGGTCAATTGTATTTTTATAAGATATACAATGAAATGAAAAAATTAATGTGAAACAAGTTCATTGACACAACATGTGCAAAATGCGTCGGCAAAGAAACATCTGATCTTTCTATTCAACTGTTATTCAGTTCCATAGCTGAACATATTGACAAACTAATTTATTTATAGTCAAATTAAGCTATTGTTTAGTACATGACTAATTAATTTATACATTTTTTTTTACTATTTAGAAAATTCCAATTGTAAAGGCTGATCGGAGACCAGGAGATGCTGAAGTTGTTTATGCATCAACAGAAAAAGCAGCAAAAGAACTTAACTGGAAGTAAGTGTGGATTTTCTCAAGCGAATGCTTTCATGATATTTAGTTGTTCTTAAAACTCTCCTTTCTGTTTATTCAATTCTTTTTATGGAAATTCAATGTTTTTGGTGTCTCCAAATTTTGCAAATATTATATCTTCTGATCAGAAATGTGGGCAAGTTTTCTTGAGTTAATTGTTTTCCCCTTTTCCTCACAAATTTATGTTCCTTGTGCAGGGCTAAACATGGCATTGATGATATGTGCCGTGATCAATGGAATTGGGCTAGCAAAAACCCTTATGGCTATGGTGAATCTGAAGAGTGA
Protein sequence

>MS.gene048934.t1

MSNKTILVTGGAGYIGSHTVLQLLLGGYNTVVVDNLDNSSQISIDRVKKLAGDFAGNLSFHKLDLRDRDGLEKIFSSTKFDAVIHFAGLKAVGESVQKPLLYYDNNLIGTIVLFEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAASPYGRTKLYIEEICRDIYRSDPGWKITLLRYFNPVGAHPSGHIGEDPRGIPNNLMPFVQQVAVGRRSALTVFGTDYSTSDGTGVRDYIHVVDLADGHIAALCKLDDPKTGCEVYNLGTGKGTSVLEMVTAFEQASRKKIPIVKADRRPGDAEVVYASTEKAAKELNWKAKHGIDDMCRDQWNWASKNPYGYGESEE