AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06078

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06078.t1 MTR_8g099535 97.983 347 7 0 1 347 1 347 0.0 704
MS.gene06078.t1 MTR_5g009170 82.558 344 60 0 3 346 46 389 0.0 610
MS.gene06078.t1 MTR_5g009160 82.507 343 60 0 1 343 1 343 0.0 606
MS.gene06078.t1 MTR_5g009160 83.271 269 45 0 75 343 12 280 5.99e-173 482
MS.gene06078.t1 MTR_8g096880 66.764 343 112 2 2 342 4 346 1.31e-170 478
MS.gene06078.t1 MTR_4g134490 65.982 341 114 2 4 342 25 365 1.33e-167 472
MS.gene06078.t1 MTR_4g134490 64.841 347 114 3 4 342 25 371 9.24e-165 465
MS.gene06078.t1 MTR_8g096880 66.562 320 105 2 2 319 4 323 2.90e-154 436
MS.gene06078.t1 MTR_8g096880 66.323 291 96 2 2 290 4 294 5.72e-139 397
MS.gene06078.t1 MTR_5g009160 81.944 216 39 0 75 290 12 227 1.41e-132 377
MS.gene06078.t1 MTR_2g032100 41.076 353 182 7 6 345 73 412 5.05e-78 245
MS.gene06078.t1 MTR_8g089180 40.401 349 186 6 6 343 73 410 1.02e-76 242
MS.gene06078.t1 MTR_8g089180 40.401 349 186 6 6 343 73 410 1.02e-76 242
MS.gene06078.t1 MTR_2g032100 41.753 194 111 2 6 199 73 264 5.66e-44 153
MS.gene06078.t1 MTR_8g099285 96.296 54 2 0 235 288 3 56 5.18e-30 109
MS.gene06078.t1 MTR_4g102270 28.205 351 212 12 2 334 91 419 2.88e-23 100
MS.gene06078.t1 MTR_4g129820 27.778 360 217 14 5 345 96 431 1.43e-21 95.5
MS.gene06078.t1 MTR_3g084090 28.000 350 208 13 5 334 100 425 6.72e-21 93.6
MS.gene06078.t1 MTR_5g011940 27.410 332 201 12 5 318 91 400 2.61e-20 91.7
MS.gene06078.t1 MTR_0354s0040 28.012 332 201 11 5 319 83 393 2.63e-20 91.7
MS.gene06078.t1 MTR_4g024600 26.781 351 219 13 5 336 102 433 1.49e-19 89.7
MS.gene06078.t1 MTR_1g009600 27.479 353 213 14 4 344 5 326 1.75e-19 90.1
MS.gene06078.t1 MTR_0034s0060 27.557 352 214 14 4 344 137 458 6.21e-19 88.6
MS.gene06078.t1 MTR_2g073240 27.273 352 215 14 4 344 19 340 1.30e-18 87.4
MS.gene06078.t1 MTR_4g063600 28.923 325 193 13 2 321 30 321 2.23e-17 82.4
MS.gene06078.t1 MTR_4g063600 29.179 329 184 15 2 321 30 318 3.56e-17 81.6
MS.gene06078.t1 MTR_2g096660 27.273 330 202 13 2 326 36 332 1.10e-14 74.7
MS.gene06078.t1 MTR_1g088480 27.692 325 183 16 6 321 120 401 1.87e-14 74.3
MS.gene06078.t1 MTR_4g120030 27.607 326 184 16 3 319 110 392 2.99e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06078.t1 AT4G10960 80.403 347 68 0 1 347 1 347 0.0 586
MS.gene06078.t1 AT1G64440 79.118 340 71 0 6 345 5 344 0.0 571
MS.gene06078.t1 AT4G23920 80.060 336 67 0 4 339 3 338 0.0 569
MS.gene06078.t1 AT1G12780 65.982 341 114 2 4 342 7 347 4.78e-170 477
MS.gene06078.t1 AT1G63180 65.982 341 114 2 4 342 7 347 4.04e-169 475
MS.gene06078.t1 AT1G63180 65.157 287 98 2 4 288 7 293 8.59e-137 391
MS.gene06078.t1 AT1G30620 42.407 349 179 6 6 343 73 410 5.91e-82 255
MS.gene06078.t1 AT1G30620 42.407 349 179 6 6 343 73 410 5.91e-82 255
MS.gene06078.t1 AT1G30620 42.407 349 179 6 6 343 73 410 5.91e-82 255
MS.gene06078.t1 AT1G30620 42.407 349 179 6 6 343 73 410 5.91e-82 255
MS.gene06078.t1 AT1G30620 42.407 349 179 6 6 343 72 409 6.26e-82 255
MS.gene06078.t1 AT5G44480 41.379 348 182 6 6 342 73 409 3.78e-79 248
MS.gene06078.t1 AT5G44480 41.379 348 182 6 6 342 73 409 3.78e-79 248
MS.gene06078.t1 AT5G44480 41.379 348 182 6 6 342 73 409 3.78e-79 248
MS.gene06078.t1 AT5G44480 41.379 348 182 6 6 342 97 433 8.93e-79 248
MS.gene06078.t1 AT4G20460 40.793 353 183 7 6 345 72 411 1.27e-76 241
MS.gene06078.t1 AT2G34850 40.773 233 131 4 117 345 1 230 9.92e-49 164
MS.gene06078.t1 AT2G34850 40.773 233 131 4 117 345 1 230 9.92e-49 164
MS.gene06078.t1 AT2G34850 40.773 233 131 4 117 345 1 230 9.92e-49 164
MS.gene06078.t1 AT2G34850 40.773 233 131 4 117 345 1 230 9.92e-49 164
MS.gene06078.t1 AT1G30620 44.330 194 106 2 6 199 73 264 1.67e-48 165
MS.gene06078.t1 AT4G00110 28.228 333 199 12 5 319 92 402 4.55e-22 97.1
MS.gene06078.t1 AT2G45310 26.667 345 219 12 5 334 98 423 1.44e-21 95.5
MS.gene06078.t1 AT1G02000 27.628 333 201 12 5 319 93 403 1.48e-20 92.4
MS.gene06078.t1 AT1G53500 27.195 353 214 15 4 344 9 330 6.65e-20 91.3
MS.gene06078.t1 AT3G23820 27.246 345 217 11 5 334 113 438 1.01e-19 90.1
MS.gene06078.t1 AT1G78570 27.066 351 217 12 4 344 7 328 2.52e-19 89.7
MS.gene06078.t1 AT4G12250 26.744 344 220 11 5 334 97 422 2.04e-18 86.3
MS.gene06078.t1 AT3G14790 26.074 349 223 11 4 344 7 328 3.14e-18 86.3
MS.gene06078.t1 AT3G14790 26.074 349 223 11 4 344 10 331 3.72e-18 86.3
MS.gene06078.t1 AT2G28760 28.000 325 196 13 2 321 29 320 1.05e-17 83.6
MS.gene06078.t1 AT2G28760 28.000 325 196 13 2 321 29 320 1.05e-17 83.6
MS.gene06078.t1 AT2G28760 28.000 325 196 13 2 321 29 320 1.05e-17 83.6
MS.gene06078.t1 AT2G28760 28.000 325 196 13 2 321 60 351 1.73e-17 83.2
MS.gene06078.t1 AT4G30440 26.404 356 221 13 5 342 89 421 3.25e-17 82.8
MS.gene06078.t1 AT5G59290 27.726 321 194 13 6 321 3 290 1.70e-14 73.6
MS.gene06078.t1 AT2G47650 27.778 342 194 19 6 330 123 428 1.45e-13 71.6
MS.gene06078.t1 AT2G47650 27.139 339 194 18 6 330 123 422 2.68e-13 70.9
MS.gene06078.t1 AT3G62830 25.664 339 199 16 6 330 121 420 3.17e-12 67.8
MS.gene06078.t1 AT3G62830 25.664 339 199 16 6 330 121 420 3.17e-12 67.8

Find 98 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAAATAGTACCTGTCTT+AGG 0.297516 4.1:+4535793 None:intergenic
TCCTCTTCAGCCACTGTATA+CGG 0.316611 4.1:-4536596 MS.gene06078:CDS
TATGTCAAACAAAACCATTC+TGG 0.318353 4.1:-4538764 MS.gene06078:CDS
TACTATGACAACAACTTGAT+TGG 0.327471 4.1:-4537201 MS.gene06078:CDS
TCAGTGCAGGGGACCTCCTT+TGG 0.348278 4.1:+4536569 None:intergenic
AAGCAGCAAAAGAACTTAAC+TGG 0.349651 4.1:-4534959 MS.gene06078:CDS
AGGAAAGGGAACATCAGTTT+TGG 0.357526 4.1:-4535581 MS.gene06078:CDS
CTCCGATCAGCCTTTACAAT+TGG 0.364198 4.1:+4535020 None:intergenic
TACGGGCTTGCAGCTGATAA+AGG 0.374143 4.1:+4536539 None:intergenic
CGGTAACCTTTCCTTTCATA+AGG 0.388596 4.1:-4538599 MS.gene06078:intron
CAGATTCACCATAGCCATAA+GGG 0.392174 4.1:+4534665 None:intergenic
AACAAAACCATTCTGGTTAC+CGG 0.402604 4.1:-4538757 MS.gene06078:CDS
GAGGTTTATAACTTGGGAAC+AGG 0.410110 4.1:-4535601 MS.gene06078:CDS
CCACTAGGATGTGCACCAAC+GGG 0.426245 4.1:+4536269 None:intergenic
GATATCTACCGTTCTGATCC+AGG 0.432927 4.1:-4536323 MS.gene06078:CDS
TGTGCCGTGATCAATGGAAT+TGG 0.433769 4.1:-4534699 MS.gene06078:CDS
TCAGATTCACCATAGCCATA+AGG 0.446286 4.1:+4534664 None:intergenic
CATACCTTGGTTCGTCCATA+CGG 0.448422 4.1:+4536521 None:intergenic
CTTATGAAAGGAAAGGTTAC+CGG 0.450256 4.1:+4538600 None:intergenic
ACTGCAACTTGCTGAACAAA+AGG 0.454333 4.1:+4536203 None:intergenic
TTAGAAAATTCCAATTGTAA+AGG 0.455191 4.1:-4535030 MS.gene06078:intron
AAGTTACCTTCTTGCATCCA+TGG 0.460279 4.1:+4537148 None:intergenic
AATTGTTCTATTTGAAGTCA+TGG 0.463893 4.1:-4537175 MS.gene06078:CDS
ACAAAAGGCATGAGGTTGTT+GGG 0.466227 4.1:+4536218 None:intergenic
ACTATGACAACAACTTGATT+GGG 0.468116 4.1:-4537200 MS.gene06078:CDS
GAAGAAGCTGGAGGACTGTA+TGG 0.470215 4.1:+4538713 None:intergenic
AGGTTGTGAGGTTTATAACT+TGG 0.472015 4.1:-4535608 MS.gene06078:CDS
ACAGTCCTCCAGCTTCTTCT+CGG 0.478199 4.1:-4538709 MS.gene06078:CDS
TATAACTTGGGAACAGGAAA+GGG 0.479391 4.1:-4535595 MS.gene06078:CDS
GCACATCCTAGTGGTCATAT+TGG 0.480170 4.1:-4536260 MS.gene06078:CDS
AACAAAAGGCATGAGGTTGT+TGG 0.482853 4.1:+4536217 None:intergenic
TATAGCACAAGTGATGGAAC+TGG 0.488752 4.1:-4536143 MS.gene06078:CDS
ATGATATGTGCCGTGATCAA+TGG 0.495661 4.1:-4534705 MS.gene06078:CDS
GCCGATGTAACCGGCTCCAC+CGG 0.496013 4.1:+4538738 None:intergenic
TTATCAGCTGCAAGCCCGTA+TGG 0.498617 4.1:-4536536 MS.gene06078:CDS
CACATTGCAGTTAGACCTGC+GGG 0.500648 4.1:-4537469 MS.gene06078:intron
TGTATGGCTGCCGATGTAAC+CGG 0.504067 4.1:+4538729 None:intergenic
TTATAACTTGGGAACAGGAA+AGG 0.505732 4.1:-4535596 MS.gene06078:CDS
GTAAAGGCTGATCGGAGACC+AGG 0.507007 4.1:-4535014 MS.gene06078:CDS
CATGTTGTTGATTTAGCTGA+TGG 0.509630 4.1:-4535847 MS.gene06078:CDS
TAAAGGAAACTCTTCAGTGC+AGG 0.517803 4.1:+4536556 None:intergenic
ATATTTGAGAAGAATTATCA+AGG 0.525846 4.1:+4538659 None:intergenic
GGTTGTGAGGTTTATAACTT+GGG 0.526110 4.1:-4535607 MS.gene06078:CDS
ATTCTGGTTACCGGTGGAGC+CGG 0.529625 4.1:-4538748 MS.gene06078:CDS
TGTAACCGCCGAGAAGAAGC+TGG 0.530547 4.1:+4538701 None:intergenic
ATACCTTGGTTCGTCCATAC+GGG 0.541410 4.1:+4536522 None:intergenic
GTGCCGTGATCAATGGAATT+GGG 0.542969 4.1:-4534698 MS.gene06078:CDS
CAAGTCCATCTCTGTCCCGC+AGG 0.543353 4.1:+4537454 None:intergenic
AAGGTTACCGGCGAAATCAC+CGG 0.545925 4.1:+4538612 None:intergenic
ACCACTAGGATGTGCACCAA+CGG 0.547577 4.1:+4536268 None:intergenic
TTTGTTCAGCAAGTTGCAGT+TGG 0.550895 4.1:-4536200 MS.gene06078:CDS
ACCGGTGGAGCCGGTTACAT+CGG 0.553635 4.1:-4538739 MS.gene06078:CDS
TTCCAATTGTAAAGGCTGAT+CGG 0.556362 4.1:-4535022 MS.gene06078:CDS
GGCTCCACCGGTAACCAGAA+TGG 0.558207 4.1:+4538750 None:intergenic
CACTGTATACGGTTGGCCAA+AGG 0.562044 4.1:-4536585 MS.gene06078:CDS
TTAGACCTGCGGGACAGAGA+TGG 0.564284 4.1:-4537459 MS.gene06078:CDS
TAAACAACTTCAGCATCTCC+TGG 0.570331 4.1:+4534996 None:intergenic
AGTTACCTTCTTGCATCCAT+GGG 0.578547 4.1:+4537149 None:intergenic
ACAGATTATAGCACAAGTGA+TGG 0.581825 4.1:-4536149 MS.gene06078:CDS
ACCGTATACAGTGGCTGAAG+AGG 0.582934 4.1:+4536595 None:intergenic
CTTCAGCCACTGTATACGGT+TGG 0.587440 4.1:-4536592 MS.gene06078:CDS
AAAGGAAACTCTTCAGTGCA+GGG 0.590389 4.1:+4536557 None:intergenic
GGCTGCCCATGGATGCAAGA+AGG 0.591203 4.1:-4537154 MS.gene06078:intron
TTTGCTGGACTGAAAGCAGT+AGG 0.592924 4.1:-4537249 MS.gene06078:CDS
AAACTCGCCGGTGATTTCGC+CGG 0.593743 4.1:-4538619 MS.gene06078:CDS
CAACAACATGAATGTAATCA+CGG 0.594284 4.1:+4535860 None:intergenic
TTTGAAGTCATGGCTGCCCA+TGG 0.595050 4.1:-4537165 MS.gene06078:CDS
AAGCTAGATGATCCTAAGAC+AGG 0.595868 4.1:-4535805 MS.gene06078:intron
TTGTTGTCATAGTAGAGCAG+TGG 0.596053 4.1:+4537210 None:intergenic
TGTGCCGCGCACCTTATGAA+AGG 0.596057 4.1:+4538588 None:intergenic
GAGTTTCTTGACTCTGTCGA+TGG 0.600323 4.1:+4538636 None:intergenic
TTGAGATACTTCAACCCCGT+TGG 0.604257 4.1:-4536284 MS.gene06078:CDS
TCCTTGTGCAGGGCTAAACA+TGG 0.604867 4.1:-4534733 MS.gene06078:intron
TGTATACGGTTGGCCAAAGG+AGG 0.615492 4.1:-4536582 MS.gene06078:CDS
TAGCCCAATTCCATTGATCA+CGG 0.615843 4.1:+4534695 None:intergenic
GTCCTCCAGCTTCTTCTCGG+CGG 0.617014 4.1:-4538706 MS.gene06078:CDS
GACAGAGTCAAGAAACTCGC+CGG 0.617460 4.1:-4538631 MS.gene06078:CDS
TCTACCGTTCTGATCCAGGA+TGG 0.618503 4.1:-4536319 MS.gene06078:CDS
ATGTTGTTGATTTAGCTGAT+GGG 0.626123 4.1:-4535846 MS.gene06078:CDS
TCCTAGTGGTCATATTGGTG+AGG 0.630469 4.1:-4536255 MS.gene06078:CDS
CGCGCACCTTATGAAAGGAA+AGG 0.634737 4.1:+4538593 None:intergenic
CCCGTTGGTGCACATCCTAG+TGG 0.638263 4.1:-4536269 MS.gene06078:CDS
TCAGTCTGTTACCTTTCGAG+AGG 0.639537 4.1:+4535534 None:intergenic
CGGTTACAACACCGTCGTGG+TGG 0.648102 4.1:-4538686 MS.gene06078:CDS
TGTTGCACATACAGGTTGTG+AGG 0.655389 4.1:-4535620 MS.gene06078:intron
TCCTCACCAATATGACCACT+AGG 0.658255 4.1:+4536254 None:intergenic
TCACATTGCAGTTAGACCTG+CGG 0.664949 4.1:-4537470 MS.gene06078:intron
AAGGAAACTCTTCAGTGCAG+GGG 0.668924 4.1:+4536558 None:intergenic
AAAACCATTCTGGTTACCGG+TGG 0.670384 4.1:-4538754 MS.gene06078:CDS
CTTGCTGAACAAAAGGCATG+AGG 0.677336 4.1:+4536210 None:intergenic
CTTTGGCCAACCGTATACAG+TGG 0.681860 4.1:+4536586 None:intergenic
CACTAGGATGTGCACCAACG+GGG 0.689749 4.1:+4536270 None:intergenic
CGGCGGTTACAACACCGTCG+TGG 0.703410 4.1:-4538689 MS.gene06078:CDS
AAGCCCGTATGGACGAACCA+AGG 0.710697 4.1:-4536525 MS.gene06078:intron
ATCAAGGTTATCCACCACGA+CGG 0.726551 4.1:+4538675 None:intergenic
AACCGCCGAGAAGAAGCTGG+AGG 0.741411 4.1:+4538704 None:intergenic
CATATTGGTGAGGATCCTCG+CGG 0.752117 4.1:-4536245 MS.gene06078:CDS
AGGTTGTTGGGAATTCCGCG+AGG 0.771351 4.1:+4536230 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATGATTTTTTAAATATTA+TGG - chr4.1:4538127-4538146 MS.gene06078:intron 10.0%
!!! GATGATTTTTTAAATATTAT+GGG - chr4.1:4538128-4538147 MS.gene06078:intron 10.0%
!! AAAACTTAAATAAGTGTTTA+TGG - chr4.1:4535341-4535360 MS.gene06078:intron 15.0%
!! AAACTTAAATAAGTGTTTAT+GGG - chr4.1:4535342-4535361 MS.gene06078:intron 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr4.1:4536504-4536523 MS.gene06078:intron 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr4.1:4536505-4536524 None:intergenic 15.0%
!! AGAAGTAAAATAAAATATGT+CGG + chr4.1:4535930-4535949 None:intergenic 15.0%
!! GATATAATATTTGCAAAATT+TGG + chr4.1:4538599-4538618 None:intergenic 15.0%
!! TTAAAAAATCATCTATCTTA+GGG + chr4.1:4538121-4538140 None:intergenic 15.0%
!! TTAGTTAGTAAATAATGATT+TGG - chr4.1:4534913-4534932 MS.gene06078:intron 15.0%
!! TTTAAAAAATCATCTATCTT+AGG + chr4.1:4538122-4538141 None:intergenic 15.0%
!!! ATATTTAATAGTTTTTCACT+AGG - chr4.1:4535539-4535558 MS.gene06078:intron 15.0%
!!! ATTTTATAAATGTCATTTGA+TGG - chr4.1:4537963-4537982 MS.gene06078:intron 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG - chr4.1:4536631-4536650 MS.gene06078:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr4.1:4536528-4536547 MS.gene06078:CDS 15.0%
!!! TATAAATTCATTTTTACGTT+CGG - chr4.1:4535633-4535652 MS.gene06078:intron 15.0%
!!! TATTTGAATTATTTTTTGCA+AGG - chr4.1:4535397-4535416 MS.gene06078:intron 15.0%
!!! TGTTTATTCAATTCTTTTTA+TGG - chr4.1:4538551-4538570 MS.gene06078:intron 15.0%
!!! TTTATTAGATTATTTTCAAG+TGG - chr4.1:4535035-4535054 MS.gene06078:intron 15.0%
!! AAACTAACCAATAGTTAATA+AGG + chr4.1:4536514-4536533 None:intergenic 20.0%
!! AAAGAATTGAATAAACAGAA+AGG + chr4.1:4538548-4538567 None:intergenic 20.0%
!! AAATATAAACAAGATTGCAA+AGG + chr4.1:4536986-4537005 None:intergenic 20.0%
!! AATATAAACAAGATTGCAAA+GGG + chr4.1:4536985-4537004 None:intergenic 20.0%
!! AATGATTAAAAATGAGAGTA+AGG + chr4.1:4537946-4537965 None:intergenic 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG - chr4.1:4536471-4536490 MS.gene06078:intron 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr4.1:4536591-4536610 MS.gene06078:CDS 20.0%
!! ATATACTATCAATTTCACAT+AGG + chr4.1:4535883-4535902 None:intergenic 20.0%
!! ATATTTGAGAAGAATTATCA+AGG + chr4.1:4534764-4534783 None:intergenic 20.0%
!! ATGATTAAAAATGAGAGTAA+GGG + chr4.1:4537945-4537964 None:intergenic 20.0%
!! GAGAAATAAAGAATTGAAAA+TGG + chr4.1:4534874-4534893 None:intergenic 20.0%
!! TACAATATTTATGAACTTAG+AGG + chr4.1:4535736-4535755 None:intergenic 20.0%
!! TCATCATCACAATAAAATAA+CGG + chr4.1:4535907-4535926 None:intergenic 20.0%
!! TTAGAAAATTCCAATTGTAA+AGG - chr4.1:4538390-4538409 MS.gene06078:intron 20.0%
!! TTATTCACAATGAATTATAG+AGG + chr4.1:4535826-4535845 None:intergenic 20.0%
!!! GTTTTACAGTGTTTTTTATT+GGG - chr4.1:4535011-4535030 MS.gene06078:CDS 20.0%
!!! TGTTTTACAGTGTTTTTTAT+TGG - chr4.1:4535010-4535029 MS.gene06078:CDS 20.0%
!!! TTATGGAAATTCAATGTTTT+TGG - chr4.1:4538568-4538587 MS.gene06078:intron 20.0%
!!! TTGCAATCTTGTTTATATTT+TGG - chr4.1:4536986-4537005 MS.gene06078:intron 20.0%
!!! TTTATTCAGTCTATTCATTT+TGG - chr4.1:4537672-4537691 MS.gene06078:intron 20.0%
! AAAAGGGTAAAATTGAAAGA+AGG - chr4.1:4535066-4535085 MS.gene06078:intron 25.0%
! AAAGGGTAAAATTGAAAGAA+GGG - chr4.1:4535067-4535086 MS.gene06078:intron 25.0%
! AAAGGTAGATCTTAACAAAT+GGG + chr4.1:4537453-4537472 None:intergenic 25.0%
! AAATAATGTGAATAGTTTCC+TGG - chr4.1:4535845-4535864 MS.gene06078:CDS 25.0%
! AAATACAAAATCACCATGTT+CGG + chr4.1:4534979-4534998 None:intergenic 25.0%
! AACATAAATTTGTGAGGAAA+AGG + chr4.1:4538668-4538687 None:intergenic 25.0%
! ACATAAATTTGTGAGGAAAA+GGG + chr4.1:4538667-4538686 None:intergenic 25.0%
! ATATTATGGGATATCTAACA+AGG - chr4.1:4538141-4538160 MS.gene06078:intron 25.0%
! ATCAAAATAATCCAAATCGA+AGG + chr4.1:4537389-4537408 None:intergenic 25.0%
! TAAGGGATAGCAAAATAAAA+AGG + chr4.1:4537928-4537947 None:intergenic 25.0%
! TATGACTAGAGAACTATTTA+GGG - chr4.1:4536918-4536937 MS.gene06078:intron 25.0%
! TCAAAATAATCCAAATCGAA+GGG + chr4.1:4537388-4537407 None:intergenic 25.0%
!! AAAACAACTCTCATTGATTA+TGG + chr4.1:4537743-4537762 None:intergenic 25.0%
!! AAACAACTCTCATTGATTAT+GGG + chr4.1:4537742-4537761 None:intergenic 25.0%
!! AATTGTTCTATTTGAAGTCA+TGG - chr4.1:4536245-4536264 MS.gene06078:CDS 25.0%
!! ATAAATCTTGTCTTTTTCTC+AGG - chr4.1:4537536-4537555 MS.gene06078:intron 25.0%
!! ATATTTTCTTCCACAAAGTA+AGG - chr4.1:4535994-4536013 MS.gene06078:intron 25.0%
!! TTAATAGTTTTTCACTAGGT+GGG - chr4.1:4535543-4535562 MS.gene06078:intron 25.0%
!! TTCTTTCAATTTTACCCTTT+TGG + chr4.1:4535067-4535086 None:intergenic 25.0%
!! TTTAATAGTTTTTCACTAGG+TGG - chr4.1:4535542-4535561 MS.gene06078:intron 25.0%
!!! AATGAGAGTTGTTTTTTCTT+TGG - chr4.1:4537748-4537767 MS.gene06078:intron 25.0%
!!! ATTGATTTTATCATCCGAAA+AGG - chr4.1:4535763-4535782 MS.gene06078:intron 25.0%
!!! ATTTTTTATTTTGCCGAACA+TGG - chr4.1:4534963-4534982 MS.gene06078:CDS 25.0%
!!! CTCTTTGAAATCTTTTTAAG+AGG + chr4.1:4535692-4535711 None:intergenic 25.0%
!!! CTTTAAGTTGATATAGCATA+AGG - chr4.1:4537989-4538008 MS.gene06078:intron 25.0%
!!! GATTTACTGAAATTTTGACT+TGG - chr4.1:4537325-4537344 MS.gene06078:intron 25.0%
AAAGCATGTTATGTACTTGT+CGG + chr4.1:4535191-4535210 None:intergenic 30.0%
AAATTTATGTTCCTTGTGCA+GGG - chr4.1:4538677-4538696 MS.gene06078:CDS 30.0%
ACAAGGAACATAAATTTGTG+AGG + chr4.1:4538674-4538693 None:intergenic 30.0%
ACTATGACAACAACTTGATT+GGG - chr4.1:4536220-4536239 MS.gene06078:CDS 30.0%
AGATCCTCAAAAGAATTCAA+AGG + chr4.1:4537471-4537490 None:intergenic 30.0%
ATATCTTCTGATCAGAAATG+TGG - chr4.1:4538614-4538633 MS.gene06078:CDS 30.0%
ATGAATTATAGAGGAATGGA+AGG + chr4.1:4535817-4535836 None:intergenic 30.0%
CAAAGGTAGATCTTAACAAA+TGG + chr4.1:4537454-4537473 None:intergenic 30.0%
CAACAACATGAATGTAATCA+CGG + chr4.1:4537563-4537582 None:intergenic 30.0%
CACAATGAATTATAGAGGAA+TGG + chr4.1:4535821-4535840 None:intergenic 30.0%
CATAAATTTGTGAGGAAAAG+GGG + chr4.1:4538666-4538685 None:intergenic 30.0%
GTATGACTAGAGAACTATTT+AGG - chr4.1:4536917-4536936 MS.gene06078:intron 30.0%
GTTGTGCGTGAATAATAATT+GGG - chr4.1:4535141-4535160 MS.gene06078:intron 30.0%
TAAGATCCTCAAAAGCTTAT+CGG + chr4.1:4537512-4537531 None:intergenic 30.0%
TACTATGACAACAACTTGAT+TGG - chr4.1:4536219-4536238 MS.gene06078:CDS 30.0%
TATCTTCTGATCAGAAATGT+GGG - chr4.1:4538615-4538634 MS.gene06078:CDS 30.0%
TGTTGTGCGTGAATAATAAT+TGG - chr4.1:4535140-4535159 MS.gene06078:intron 30.0%
TTAAGGTAGCAGTATTATCA+GGG + chr4.1:4536725-4536744 None:intergenic 30.0%
TTCTTCAATGTATAGCTGAA+AGG + chr4.1:4537068-4537087 None:intergenic 30.0%
TTTACTTACAACTCACGTAA+TGG + chr4.1:4538076-4538095 None:intergenic 30.0%
TTTCAAATAGTACCTGTCTT+AGG + chr4.1:4537630-4537649 None:intergenic 30.0%
TTTGTCAATATGTTCAGCTA+TGG + chr4.1:4538295-4538314 None:intergenic 30.0%
! ATTTTTACGTTCGGTACTTT+TGG - chr4.1:4535642-4535661 MS.gene06078:intron 30.0%
! CATAGGTAACATATTTTTCC+AGG + chr4.1:4535866-4535885 None:intergenic 30.0%
! GAACTATTTAGGGTACTTAT+CGG - chr4.1:4536928-4536947 MS.gene06078:intron 30.0%
! TCTACCTTTGAATTCTTTTG+AGG - chr4.1:4537464-4537483 MS.gene06078:intron 30.0%
! TTCAATTTTACCCTTTTGGT+TGG + chr4.1:4535063-4535082 None:intergenic 30.0%
! TTTAAGGTAGCAGTATTATC+AGG + chr4.1:4536726-4536745 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr4.1:4536422-4536441 None:intergenic 30.0%
!! ATGTTGTTGATTTAGCTGAT+GGG - chr4.1:4537574-4537593 MS.gene06078:intron 30.0%
!! TCAATTTTACCCTTTTGGTT+GGG + chr4.1:4535062-4535081 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr4.1:4536423-4536442 MS.gene06078:intron 30.0%
!!! TTTTTTCCGATAAGCTTTTG+AGG - chr4.1:4537503-4537522 MS.gene06078:intron 30.0%
!!! TTTTTTCTTTGGTGCGTTTT+TGG - chr4.1:4537759-4537778 MS.gene06078:intron 30.0%
AACTCTCGTTAGATTCTGAT+AGG + chr4.1:4537038-4537057 None:intergenic 35.0%
AACTTAACTGGAAGTAAGTG+TGG - chr4.1:4538473-4538492 MS.gene06078:intron 35.0%
AAGCAGCAAAAGAACTTAAC+TGG - chr4.1:4538461-4538480 MS.gene06078:intron 35.0%
AAGCATGTTATGTACTTGTC+GGG + chr4.1:4535190-4535209 None:intergenic 35.0%
ACAGATTATAGCACAAGTGA+TGG - chr4.1:4537271-4537290 MS.gene06078:CDS 35.0%
AGGTTGTGAGGTTTATAACT+TGG - chr4.1:4537812-4537831 MS.gene06078:intron 35.0%
ATAGACTGAGTACTTGTAGT+GGG - chr4.1:4536349-4536368 MS.gene06078:CDS 35.0%
ATAGTTCTCTAGTCATACCT+TGG + chr4.1:4536915-4536934 None:intergenic 35.0%
ATGACAGCATCAAATCTGAA+AGG + chr4.1:4536147-4536166 None:intergenic 35.0%
CAAATTTATGTTCCTTGTGC+AGG - chr4.1:4538676-4538695 MS.gene06078:CDS 35.0%
CAATCTCACAAGACACTTTA+AGG + chr4.1:4536742-4536761 None:intergenic 35.0%
CTTATGAAAGGAAAGGTTAC+CGG + chr4.1:4534823-4534842 None:intergenic 35.0%
GATAATAATGCTGTCACAGT+TGG - chr4.1:4537406-4537425 MS.gene06078:intron 35.0%
GGTTGTGAGGTTTATAACTT+GGG - chr4.1:4537813-4537832 MS.gene06078:intron 35.0%
GTAGTGTGCTGAGTATTAAT+TGG - chr4.1:4536553-4536572 MS.gene06078:CDS 35.0%
GTTGATATAGCATAAGGACT+TGG - chr4.1:4537995-4538014 MS.gene06078:intron 35.0%
TAAAAGCCCCAATCTTCTAT+CGG + chr4.1:4535615-4535634 None:intergenic 35.0%
TATAACTTGGGAACAGGAAA+GGG - chr4.1:4537825-4537844 MS.gene06078:intron 35.0%
TATAGACTGAGTACTTGTAG+TGG - chr4.1:4536348-4536367 MS.gene06078:CDS 35.0%
TATCATCCGAAAAGGATTAG+TGG - chr4.1:4535771-4535790 MS.gene06078:intron 35.0%
TATGCACAATCCTTACTTTG+TGG + chr4.1:4536007-4536026 None:intergenic 35.0%
TCACCAAAAAAAAGCCAGAT+TGG + chr4.1:4535255-4535274 None:intergenic 35.0%
TGTGCTGAGTATTAATTGGA+GGG - chr4.1:4536557-4536576 MS.gene06078:CDS 35.0%
TTATAACTTGGGAACAGGAA+AGG - chr4.1:4537824-4537843 MS.gene06078:intron 35.0%
TTATGTGATGTTGCACATAC+AGG - chr4.1:4537792-4537811 MS.gene06078:intron 35.0%
TTCCAATTGTAAAGGCTGAT+CGG - chr4.1:4538398-4538417 MS.gene06078:intron 35.0%
TTTAAGTCCTGAATCTTGCA+GGG - chr4.1:4536304-4536323 MS.gene06078:CDS 35.0%
! AACAAAACCATTCTGGTTAC+CGG - chr4.1:4534663-4534682 MS.gene06078:CDS 35.0%
! CTTAAAGTGTCTTGTGAGAT+TGG - chr4.1:4536740-4536759 MS.gene06078:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr4.1:4536657-4536676 MS.gene06078:intron 35.0%
!! ATTGTGCCACTAATCCTTTT+CGG + chr4.1:4535780-4535799 None:intergenic 35.0%
!! CATGTTGTTGATTTAGCTGA+TGG - chr4.1:4537573-4537592 MS.gene06078:intron 35.0%
!! GAAAGAAGGGTATTATTCCT+GGG - chr4.1:4535080-4535099 MS.gene06078:intron 35.0%
!! TGAAAGAAGGGTATTATTCC+TGG - chr4.1:4535079-4535098 MS.gene06078:intron 35.0%
!!! AACAGTGTTATTTTCCATCC+TGG + chr4.1:4537118-4537137 None:intergenic 35.0%
!!! GATCCAATCTGGCTTTTTTT+TGG - chr4.1:4535249-4535268 MS.gene06078:intron 35.0%
AAAGGAAACTCTTCAGTGCA+GGG + chr4.1:4536866-4536885 None:intergenic 40.0%
AAGCTAGATGATCCTAAGAC+AGG - chr4.1:4537615-4537634 MS.gene06078:intron 40.0%
AAGTTACCTTCTTGCATCCA+TGG + chr4.1:4536275-4536294 None:intergenic 40.0%
ACAACATGTGCAAAATGCGT+CGG - chr4.1:4538228-4538247 MS.gene06078:intron 40.0%
ACAAGGGAAACTTGTATGTG+TGG - chr4.1:4535567-4535586 MS.gene06078:CDS 40.0%
ACTTATCGGATACTTGGGTA+GGG - chr4.1:4536942-4536961 MS.gene06078:intron 40.0%
AGCAAAAACCCTTATGGCTA+TGG - chr4.1:4538747-4538766 MS.gene06078:CDS 40.0%
AGCTGAGTCTGTTTCACAAT+TGG - chr4.1:4535164-4535183 MS.gene06078:intron 40.0%
AGTACTCAGTCTATATGACC+CGG + chr4.1:4536343-4536362 None:intergenic 40.0%
AGTTACCTTCTTGCATCCAT+GGG + chr4.1:4536274-4536293 None:intergenic 40.0%
ATAGAGGAATGGAAGGCAAA+CGG + chr4.1:4535810-4535829 None:intergenic 40.0%
ATGATATGTGCCGTGATCAA+TGG - chr4.1:4538715-4538734 MS.gene06078:CDS 40.0%
CAATGGTTGTGAACTGATGT+TGG - chr4.1:4537713-4537732 MS.gene06078:intron 40.0%
CAGATTCACCATAGCCATAA+GGG + chr4.1:4538758-4538777 None:intergenic 40.0%
CGGTAACCTTTCCTTTCATA+AGG - chr4.1:4534821-4534840 MS.gene06078:intron 40.0%
CGTTACTACTAGATCCAATC+TGG - chr4.1:4535238-4535257 MS.gene06078:intron 40.0%
CTTTAAGTCCTGAATCTTGC+AGG - chr4.1:4536303-4536322 MS.gene06078:CDS 40.0%
GAGGTTTATAACTTGGGAAC+AGG - chr4.1:4537819-4537838 MS.gene06078:intron 40.0%
GTGTGCTGAGTATTAATTGG+AGG - chr4.1:4536556-4536575 MS.gene06078:CDS 40.0%
TAAACAACTTCAGCATCTCC+TGG + chr4.1:4538427-4538446 None:intergenic 40.0%
TAAAGGAAACTCTTCAGTGC+AGG + chr4.1:4536867-4536886 None:intergenic 40.0%
TACTTATCGGATACTTGGGT+AGG - chr4.1:4536941-4536960 MS.gene06078:intron 40.0%
TAGCCCAATTCCATTGATCA+CGG + chr4.1:4538728-4538747 None:intergenic 40.0%
TCAGATTCACCATAGCCATA+AGG + chr4.1:4538759-4538778 None:intergenic 40.0%
TCCAAATCGAAGGGAAATAG+TGG + chr4.1:4537379-4537398 None:intergenic 40.0%
TCCACTATTTCCCTTCGATT+TGG - chr4.1:4537375-4537394 MS.gene06078:intron 40.0%
TTAAGTCCTGAATCTTGCAG+GGG - chr4.1:4536305-4536324 MS.gene06078:CDS 40.0%
TTGTTGTCATAGTAGAGCAG+TGG + chr4.1:4536213-4536232 None:intergenic 40.0%
TTTGTTCAGCAAGTTGCAGT+TGG - chr4.1:4537220-4537239 MS.gene06078:CDS 40.0%
! AACAAAAGGCATGAGGTTGT+TGG + chr4.1:4537206-4537225 None:intergenic 40.0%
! ACAAAAGGCATGAGGTTGTT+GGG + chr4.1:4537205-4537224 None:intergenic 40.0%
! AGGAAAGGGAACATCAGTTT+TGG - chr4.1:4537839-4537858 MS.gene06078:intron 40.0%
! AGGGTACTTATCGGATACTT+GGG - chr4.1:4536937-4536956 MS.gene06078:intron 40.0%
! GATGCTGTCATACATTTTGC+TGG - chr4.1:4536156-4536175 MS.gene06078:CDS 40.0%
! GATGGTTACAGCTTTTGAAC+AGG - chr4.1:4537863-4537882 MS.gene06078:intron 40.0%
! TAGGGTACTTATCGGATACT+TGG - chr4.1:4536936-4536955 MS.gene06078:intron 40.0%
! TATAGCACAAGTGATGGAAC+TGG - chr4.1:4537277-4537296 MS.gene06078:intron 40.0%
! TTTTCACTAGGTGGGTACAA+GGG - chr4.1:4535551-4535570 MS.gene06078:CDS 40.0%
! TTTTCCATCCTGGATCAGAA+CGG + chr4.1:4537108-4537127 None:intergenic 40.0%
! TTTTTCACTAGGTGGGTACA+AGG - chr4.1:4535550-4535569 MS.gene06078:CDS 40.0%
!! AAGGGTATTATTCCTGGGAT+GGG - chr4.1:4535085-4535104 MS.gene06078:intron 40.0%
!! ACTGCAACTTGCTGAACAAA+AGG + chr4.1:4537220-4537239 None:intergenic 40.0%
!! CATTTTGGTAGACTCCTTGA+CGG - chr4.1:4537687-4537706 MS.gene06078:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr4.1:4536661-4536680 MS.gene06078:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr4.1:4536680-4536661 None:intergenic 40.0%
AAGGAAACTCTTCAGTGCAG+GGG + chr4.1:4536865-4536884 None:intergenic 45.0%
ATCAAGGTTATCCACCACGA+CGG + chr4.1:4534748-4534767 None:intergenic 45.0%
ATCTTGCAGGGGAAGAATGT+CGG - chr4.1:4536316-4536335 MS.gene06078:CDS 45.0%
ATTCTTCCCCTGCAAGATTC+AGG + chr4.1:4536314-4536333 None:intergenic 45.0%
CCCAATCTTCTATCGGACAA+GGG + chr4.1:4535608-4535627 None:intergenic 45.0%
CCCTTGTCCGATAGAAGATT+GGG - chr4.1:4535605-4535624 MS.gene06078:CDS 45.0%
CCTTGTCCGATAGAAGATTG+GGG - chr4.1:4535606-4535625 MS.gene06078:CDS 45.0%
CTCCGATCAGCCTTTACAAT+TGG + chr4.1:4538403-4538422 None:intergenic 45.0%
CTTGTATGTGTGGACATGAC+TGG - chr4.1:4535577-4535596 MS.gene06078:CDS 45.0%
CTTTCCTTTCATAAGGTGCG+CGG - chr4.1:4534828-4534847 MS.gene06078:intron 45.0%
GAGTTTCTTGACTCTGTCGA+TGG + chr4.1:4534787-4534806 None:intergenic 45.0%
GATATCTACCGTTCTGATCC+AGG - chr4.1:4537097-4537116 MS.gene06078:intron 45.0%
GCACATCCTAGTGGTCATAT+TGG - chr4.1:4537160-4537179 MS.gene06078:CDS 45.0%
GGGAATTACGCATGTAAGCA+TGG + chr4.1:4537433-4537452 None:intergenic 45.0%
GTGCCGTGATCAATGGAATT+GGG - chr4.1:4538722-4538741 MS.gene06078:CDS 45.0%
TCAAGTGGACCCAACCAAAA+GGG - chr4.1:4535050-4535069 MS.gene06078:intron 45.0%
TCACATTGCAGTTAGACCTG+CGG - chr4.1:4535950-4535969 MS.gene06078:intron 45.0%
TCAGTCTGTTACCTTTCGAG+AGG + chr4.1:4537889-4537908 None:intergenic 45.0%
TCCCTTGTCCGATAGAAGAT+TGG - chr4.1:4535604-4535623 MS.gene06078:CDS 45.0%
TCCTAGTGGTCATATTGGTG+AGG - chr4.1:4537165-4537184 MS.gene06078:CDS 45.0%
TCCTCACCAATATGACCACT+AGG + chr4.1:4537169-4537188 None:intergenic 45.0%
TCCTCTTCAGCCACTGTATA+CGG - chr4.1:4536824-4536843 MS.gene06078:intron 45.0%
TGTGCCGTGATCAATGGAAT+TGG - chr4.1:4538721-4538740 MS.gene06078:CDS 45.0%
TGTTGCACATACAGGTTGTG+AGG - chr4.1:4537800-4537819 MS.gene06078:intron 45.0%
TTCAAGTGGACCCAACCAAA+AGG - chr4.1:4535049-4535068 MS.gene06078:intron 45.0%
TTGAGATACTTCAACCCCGT+TGG - chr4.1:4537136-4537155 MS.gene06078:intron 45.0%
TTTAAGAGGTCATCGACCTC+TGG + chr4.1:4535678-4535697 None:intergenic 45.0%
TTTGCTGGACTGAAAGCAGT+AGG - chr4.1:4536171-4536190 MS.gene06078:CDS 45.0%
! AAAACCATTCTGGTTACCGG+TGG - chr4.1:4534666-4534685 MS.gene06078:CDS 45.0%
! ATACCTTGGTTCGTCCATAC+GGG + chr4.1:4536901-4536920 None:intergenic 45.0%
! CATACCTTGGTTCGTCCATA+CGG + chr4.1:4536902-4536921 None:intergenic 45.0%
! CTTGCTGAACAAAAGGCATG+AGG + chr4.1:4537213-4537232 None:intergenic 45.0%
! TTTTGAACAGGCCTCTCGAA+AGG - chr4.1:4537875-4537894 MS.gene06078:intron 45.0%
!! CGCTCTGCATTGACAGTTTT+TGG - chr4.1:4537247-4537266 MS.gene06078:CDS 45.0%
!! GAAGGGTATTATTCCTGGGA+TGG - chr4.1:4535084-4535103 MS.gene06078:intron 45.0%
!! TGGGCTAGCAAAAACCCTTA+TGG - chr4.1:4538741-4538760 MS.gene06078:CDS 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr4.1:4536660-4536679 MS.gene06078:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr4.1:4536679-4536660 None:intergenic 45.0%
!!! GGGAACATCAGTTTTGGAGA+TGG - chr4.1:4537845-4537864 MS.gene06078:intron 45.0%
!!! TTTTGGTTTCCTAGCACCAG+AGG - chr4.1:4535659-4535678 MS.gene06078:intron 45.0%
!!! AATATATTTTTTATTCAATA+AGG + chr4.1:4535524-4535543 None:intergenic 5.0%
AAGGTTACCGGCGAAATCAC+CGG + chr4.1:4534811-4534830 None:intergenic 50.0%
ACAGTCCTCCAGCTTCTTCT+CGG - chr4.1:4534711-4534730 MS.gene06078:CDS 50.0%
ACCACTAGGATGTGCACCAA+CGG + chr4.1:4537155-4537174 None:intergenic 50.0%
ACCGTATACAGTGGCTGAAG+AGG + chr4.1:4536828-4536847 None:intergenic 50.0%
AGACTCCTTGACGGTAGCAA+TGG - chr4.1:4537696-4537715 MS.gene06078:intron 50.0%
CACAACCATTGCTACCGTCA+AGG + chr4.1:4537704-4537723 None:intergenic 50.0%
CACATTGCAGTTAGACCTGC+GGG - chr4.1:4535951-4535970 MS.gene06078:intron 50.0%
CATATTGGTGAGGATCCTCG+CGG - chr4.1:4537175-4537194 MS.gene06078:CDS 50.0%
CCCCAATCTTCTATCGGACA+AGG + chr4.1:4535609-4535628 None:intergenic 50.0%
CGCGCACCTTATGAAAGGAA+AGG + chr4.1:4534830-4534849 None:intergenic 50.0%
CTTCAGCCACTGTATACGGT+TGG - chr4.1:4536828-4536847 MS.gene06078:intron 50.0%
CTTTGGCCAACCGTATACAG+TGG + chr4.1:4536837-4536856 None:intergenic 50.0%
GAAGAAGCTGGAGGACTGTA+TGG + chr4.1:4534710-4534729 None:intergenic 50.0%
GACAGAGTCAAGAAACTCGC+CGG - chr4.1:4534789-4534808 MS.gene06078:intron 50.0%
TACGGGCTTGCAGCTGATAA+AGG + chr4.1:4536884-4536903 None:intergenic 50.0%
TATTCCTGGGATGGGAGAGA+CGG - chr4.1:4535093-4535112 MS.gene06078:intron 50.0%
TCCTTGTGCAGGGCTAAACA+TGG - chr4.1:4538687-4538706 MS.gene06078:CDS 50.0%
TCTACCGTTCTGATCCAGGA+TGG - chr4.1:4537101-4537120 MS.gene06078:intron 50.0%
TCTTGCAGGGGAAGAATGTC+GGG - chr4.1:4536317-4536336 MS.gene06078:CDS 50.0%
TGTATGGCTGCCGATGTAAC+CGG + chr4.1:4534694-4534713 None:intergenic 50.0%
TTATCAGCTGCAAGCCCGTA+TGG - chr4.1:4536884-4536903 MS.gene06078:intron 50.0%
! CACTGTATACGGTTGGCCAA+AGG - chr4.1:4536835-4536854 MS.gene06078:intron 50.0%
! TGTATACGGTTGGCCAAAGG+AGG - chr4.1:4536838-4536857 MS.gene06078:intron 50.0%
! TTTGAAGTCATGGCTGCCCA+TGG - chr4.1:4536255-4536274 MS.gene06078:CDS 50.0%
AAACTCGCCGGTGATTTCGC+CGG - chr4.1:4534801-4534820 MS.gene06078:intron 55.0%
AAGCCCGTATGGACGAACCA+AGG - chr4.1:4536895-4536914 MS.gene06078:intron 55.0%
AGGTTGTTGGGAATTCCGCG+AGG + chr4.1:4537193-4537212 None:intergenic 55.0%
CACTAGGATGTGCACCAACG+GGG + chr4.1:4537153-4537172 None:intergenic 55.0%
CCACTAGGATGTGCACCAAC+GGG + chr4.1:4537154-4537173 None:intergenic 55.0%
GCCATGTTTAGCCCTGCACA+AGG + chr4.1:4538691-4538710 None:intergenic 55.0%
GTAAAGGCTGATCGGAGACC+AGG - chr4.1:4538406-4538425 MS.gene06078:intron 55.0%
TGTAACCGCCGAGAAGAAGC+TGG + chr4.1:4534722-4534741 None:intergenic 55.0%
TGTGCCGCGCACCTTATGAA+AGG + chr4.1:4534835-4534854 None:intergenic 55.0%
TTAGACCTGCGGGACAGAGA+TGG - chr4.1:4535961-4535980 MS.gene06078:intron 55.0%
! ATTCTGGTTACCGGTGGAGC+CGG - chr4.1:4534672-4534691 MS.gene06078:CDS 55.0%
AACCGCCGAGAAGAAGCTGG+AGG + chr4.1:4534719-4534738 None:intergenic 60.0%
ACCGGTGGAGCCGGTTACAT+CGG - chr4.1:4534681-4534700 MS.gene06078:CDS 60.0%
CAAGTCCATCTCTGTCCCGC+AGG + chr4.1:4535969-4535988 None:intergenic 60.0%
CCCGTTGGTGCACATCCTAG+TGG - chr4.1:4537151-4537170 MS.gene06078:intron 60.0%
CGGTTACAACACCGTCGTGG+TGG - chr4.1:4534734-4534753 MS.gene06078:intron 60.0%
GGCTCCACCGGTAACCAGAA+TGG + chr4.1:4534673-4534692 None:intergenic 60.0%
GGCTGCCCATGGATGCAAGA+AGG - chr4.1:4536266-4536285 MS.gene06078:CDS 60.0%
GGTCATCGACCTCTGGTGCT+AGG + chr4.1:4535671-4535690 None:intergenic 60.0%
GTCCTCCAGCTTCTTCTCGG+CGG - chr4.1:4534714-4534733 MS.gene06078:CDS 60.0%
TCAGTGCAGGGGACCTCCTT+TGG + chr4.1:4536854-4536873 None:intergenic 60.0%
CAGGGGAAGAATGTCGGGCC+GGG - chr4.1:4536322-4536341 MS.gene06078:CDS 65.0%
CGGCGGTTACAACACCGTCG+TGG - chr4.1:4534731-4534750 MS.gene06078:intron 65.0%
GCAGGGGAAGAATGTCGGGC+CGG - chr4.1:4536321-4536340 MS.gene06078:CDS 65.0%
TCCTGGGATGGGAGAGACGG+TGG - chr4.1:4535096-4535115 MS.gene06078:intron 65.0%
! GCCGATGTAACCGGCTCCAC+CGG + chr4.1:4534685-4534704 None:intergenic 65.0%
GCCACCGTCTCTCCCATCCC+AGG + chr4.1:4535100-4535119 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 4534657 4538785 4534657 ID=MS.gene06078
chr4.1 mRNA 4534657 4538785 4534657 ID=MS.gene06078.t1;Parent=MS.gene06078
chr4.1 exon 4538600 4538785 4538600 ID=MS.gene06078.t1.exon1;Parent=MS.gene06078.t1
chr4.1 CDS 4538600 4538785 4538600 ID=cds.MS.gene06078.t1;Parent=MS.gene06078.t1
chr4.1 exon 4537432 4537481 4537432 ID=MS.gene06078.t1.exon2;Parent=MS.gene06078.t1
chr4.1 CDS 4537432 4537481 4537432 ID=cds.MS.gene06078.t1;Parent=MS.gene06078.t1
chr4.1 exon 4537155 4537290 4537155 ID=MS.gene06078.t1.exon3;Parent=MS.gene06078.t1
chr4.1 CDS 4537155 4537290 4537155 ID=cds.MS.gene06078.t1;Parent=MS.gene06078.t1
chr4.1 exon 4536526 4536627 4536526 ID=MS.gene06078.t1.exon4;Parent=MS.gene06078.t1
chr4.1 CDS 4536526 4536627 4536526 ID=cds.MS.gene06078.t1;Parent=MS.gene06078.t1
chr4.1 exon 4536142 4536369 4536142 ID=MS.gene06078.t1.exon5;Parent=MS.gene06078.t1
chr4.1 CDS 4536142 4536369 4536142 ID=cds.MS.gene06078.t1;Parent=MS.gene06078.t1
chr4.1 exon 4535806 4535884 4535806 ID=MS.gene06078.t1.exon6;Parent=MS.gene06078.t1
chr4.1 CDS 4535806 4535884 4535806 ID=cds.MS.gene06078.t1;Parent=MS.gene06078.t1
chr4.1 exon 4535546 4535628 4535546 ID=MS.gene06078.t1.exon7;Parent=MS.gene06078.t1
chr4.1 CDS 4535546 4535628 4535546 ID=cds.MS.gene06078.t1;Parent=MS.gene06078.t1
chr4.1 exon 4534957 4535048 4534957 ID=MS.gene06078.t1.exon8;Parent=MS.gene06078.t1
chr4.1 CDS 4534957 4535048 4534957 ID=cds.MS.gene06078.t1;Parent=MS.gene06078.t1
chr4.1 exon 4534657 4534744 4534657 ID=MS.gene06078.t1.exon9;Parent=MS.gene06078.t1
chr4.1 CDS 4534657 4534744 4534657 ID=cds.MS.gene06078.t1;Parent=MS.gene06078.t1
Gene Sequence

>MS.gene06078

ATGTCAAACAAAACCATTCTGGTTACCGGTGGAGCCGGTTACATCGGCAGCCATACAGTCCTCCAGCTTCTTCTCGGCGGTTACAACACCGTCGTGGTGGATAACCTTGATAATTCTTCTCAAATATCCATCGACAGAGTCAAGAAACTCGCCGGTGATTTCGCCGGTAACCTTTCCTTTCATAAGGTGCGCGGCACATTCTCTCGTTGCTCTACCATTTTCAATTCTTTATTTCTCTCTGTCTGTTTTTAATTAATTAGTTAGTAAATAATGATTTGGTTGTACTGTCTTTATGATTTGATAATTATTTTTTATTTTGCCGAACATGGTGATTTTGTATTTAAAAAAAAAAATGTTTTACAGTGTTTTTTATTGGGTTTTATTAGATTATTTTCAAGTGGACCCAACCAAAAGGGTAAAATTGAAAGAAGGGTATTATTCCTGGGATGGGAGAGACGGTGGCAGATTCGAATAATATGTGTGTGTTGTGCGTGAATAATAATTGGGAGCTGAGTCTGTTTCACAATTGGCCCGACAAGTACATAACATGCTTTTTGATGTGATGTTTGTTTTGTTTATTTCGTTACTACTAGATCCAATCTGGCTTTTTTTTGGTGATATTGCAATTTTGTTGAAATTCTAAACTGTACTGTAGTTTTCAAAGTGAATTTGAAAAAAAAAAAAAAAACTTAAATAAGTGTTTATGGGATAAATAAATAATTATTGTATTATTCAAAATGTATTTGAATTATTTTTTGCAAGGAGTTGAAAAAAATAGCTTATTTTTTGACGTTTCATAAAAATAGCTGAAAACAACATATAAATTACAATATTAGCTGCAATAGACATTGATAAAGTATTTCACCTTATTGAATAAAAAATATATTTAATAGTTTTTCACTAGGTGGGTACAAGGGAAACTTGTATGTGTGGACATGACTGGTTTCTCCCTTGTCCGATAGAAGATTGGGGCTTTTATAAATTCATTTTTACGTTCGGTACTTTTGGTTTCCTAGCACCAGAGGTCGATGACCTCTTAAAAAGATTTCAAAGAGTCACGCATAAAAATATCATGTCCTCTAAGTTCATAAATATTGTATTTAAGAATTGATTTTATCATCCGAAAAGGATTAGTGGCACAATTTGTTGTCCGTTTGCCTTCCATTCCTCTATAATTCATTGTGAATAAAATAATGTGAATAGTTTCCTGGAAAAATATGTTACCTATGTGAAATTGATAGTATATACCGTTATTTTATTGTGATGATGACCGACATATTTTATTTTACTTCTTCACATTGCAGTTAGACCTGCGGGACAGAGATGGACTTGAGAAAATATTTTCTTCCACAAAGTAAGGATTGTGCATAAGCTTTTGTGATTTTTCTTTTATACAAAAGATTGCACACATTTCAATTTCAAGTTCTCTTGCAATTTCATTTGATCACTGATTTATAAATGTTTGATGTATATGTATATGTATATTTCCTTTCAGATTTGATGCTGTCATACATTTTGCTGGACTGAAAGCAGTAGGTGAAAGTGTGCAGAAACCACTGCTCTACTATGACAACAACTTGATTGGGACAATTGTTCTATTTGAAGTCATGGCTGCCCATGGATGCAAGAAGGTAACTTCATTTTAGCTTTAAGTCCTGAATCTTGCAGGGGAAGAATGTCGGGCCGGGTCATATAGACTGAGTACTTGTAGTGGGAAATGATTCAAAAGATTCAGAAGTTTCATCATAAGATACTACTCCCTCCGTTTCAAAATGAGTGTCGTTTTAGGTGTTTACACACATATTAAGAAATGCAATGATTAAAAGAAAGAGAATGGTTATTTTACCAAATTATCCTTATTAACTATTGGTTAGTTTTAAAAGTAATACTTTGGAAGTAGTGTGCTGAGTATTAATTGGAGGGTACAATTGAAAAGAAAAAGTTATTATTGCATTGGAAACTGAAAGTGACATTCATTTTGAAACAATTTTTTTTGGCTAAAGCGACACTCATTTTGAAACGGAGGGAGTATAAGATATAGTCTAGATATTTTCTTCTTCTAGTGCCCTGATAATACTGCTACCTTAAAGTGTCTTGTGAGATTGGTTGTTGCGATTTTGTTACTTAACATGATTCTGTATTTCTTGATTGATTTCAGCTTGTGTTCTCCTCTTCAGCCACTGTATACGGTTGGCCAAAGGAGGTCCCCTGCACTGAAGAGTTTCCTTTATCAGCTGCAAGCCCGTATGGACGAACCAAGGTATGACTAGAGAACTATTTAGGGTACTTATCGGATACTTGGGTAGGGATAGTGAAACAAGAATTCCCTTTGCAATCTTGTTTATATTTTGGTTGTATATTGCAGATTACAGATGTATCCTATCAGAATCTAACGAGAGTTTTTTTTTCCTTTCAGCTATACATTGAAGAAATTTGTCGTGATATCTACCGTTCTGATCCAGGATGGAAAATAACACTGTTGAGATACTTCAACCCCGTTGGTGCACATCCTAGTGGTCATATTGGTGAGGATCCTCGCGGAATTCCCAACAACCTCATGCCTTTTGTTCAGCAAGTTGCAGTTGGCAGACGCTCTGCATTGACAGTTTTTGGAACAGATTATAGCACAAGTGATGGAACTGGAGTATGTTTTCTTTGTTCTTGACTTGATTTACTGAAATTTTGACTTGGAAAGTTGCATGCTAAGCTCACACACTATCCACTATTTCCCTTCGATTTGGATTATTTTGATAATAATGCTGTCACAGTTGGTCCATGCTTACATGCGTAATTCCCATTTGTTAAGATCTACCTTTGAATTCTTTTGAGGATCTTACATTTTTTTTTTTTTTCCGATAAGCTTTTGAGGATCTTACATGATAAATCTTGTCTTTTTCTCAGGTCCGTGATTACATTCATGTTGTTGATTTAGCTGATGGGCACATTGCTGCATTGTGTAAGCTAGATGATCCTAAGACAGGTACTATTTGAAATTTGATCAAATTCTTCTAATAATTTATTCAGTCTATTCATTTTGGTAGACTCCTTGACGGTAGCAATGGTTGTGAACTGATGTTGGATTCCCATAATCAATGAGAGTTGTTTTTTCTTTGGTGCGTTTTTGGATTTTCACTTTTATGTGATGTTGCACATACAGGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTACAGCTTTTGAACAGGCCTCTCGAAAGGTAACAGACTGATGATTCTATTTATGATCCTTTTTATTTTGCTATCCCTTACTCTCATTTTTAATCATTTTATAAATGTCATTTGATGGTCTCTTTAAGTTGATATAGCATAAGGACTTGGCTTAGTGTTAAGATAATCATTTATGATAGCTCTTAAAGTTGTGTTCAACTTATTTCCATTACGTGAGTTGTAAGTAAACTATAAAAATCTTTCACTTTGACCCTAAGATAGATGATTTTTTAAATATTATGGGATATCTAACAAGGTCAATTGTATTTTTATAAGATATACAATGAAATGAAAAAATTAATGTGAAACAAGTTCATTGACACAACATGTGCAAAATGCGTCGGCAAAGAAACATCTGATCTTTCTATTCAACTGTTATTCAGTTCCATAGCTGAACATATTGACAAACTAATTTATTTATAGTCAAATTAAGCTATTGTTTAGTACATGACTAATTAATTTATACATTTTTTTTTTTACTATTTAGAAAATTCCAATTGTAAAGGCTGATCGGAGACCAGGAGATGCTGAAGTTGTTTATGCATCAACAGAAAAAGCAGCAAAAGAACTTAACTGGAAGTAAGTGTGGATTTTCTCAAGCGAATGCTTTCATGATATTTAGTTGTTCTTAAAACTCTCCTTTCTGTTTATTCAATTCTTTTTATGGAAATTCAATGTTTTTGGTGTCTCCAAATTTTGCAAATATTATATCTTCTGATCAGAAATGTGGGCAAGTTTTCTTGAGTTAATTGTTTTCCCCTTTTCCTCACAAATTTATGTTCCTTGTGCAGGGCTAAACATGGCATTGATGATATGTGCCGTGATCAATGGAATTGGGCTAGCAAAAACCCTTATGGCTATGGTGAATCTGAAGAGTGA
Protein sequence

>MS.gene06078.t1

MSNKTILVTGGAGYIGSHTVLQLLLGGYNTVVVDNLDNSSQISIDRVKKLAGDFAGNLSFHKLDLRDRDGLEKIFSSTKFDAVIHFAGLKAVGESVQKPLLYYDNNLIGTIVLFEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAASPYGRTKLYIEEICRDIYRSDPGWKITLLRYFNPVGAHPSGHIGEDPRGIPNNLMPFVQQVAVGRRSALTVFGTDYSTSDGTGVRDYIHVVDLADGHIAALCKLDDPKTGCEVYNLGTGKGTSVLEMVTAFEQASRKKIPIVKADRRPGDAEVVYASTEKAAKELNWKAKHGIDDMCRDQWNWASKNPYGYGESEE