Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024691.t1 | XP_003610979.1 | 96.6 | 349 | 12 | 0 | 1 | 349 | 1 | 349 | 1.60E-195 | 691.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024691.t1 | O65781 | 85.1 | 348 | 52 | 0 | 1 | 348 | 1 | 348 | 4.2e-176 | 618.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024691.t1 | G7K9B2 | 96.6 | 349 | 12 | 0 | 1 | 349 | 1 | 349 | 1.2e-195 | 691.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024691 | MS.gene30948 | PPI |
| MS.gene33973 | MS.gene024691 | PPI |
| MS.gene67882 | MS.gene024691 | PPI |
| MS.gene21670 | MS.gene024691 | PPI |
| MS.gene024691 | MS.gene41197 | PPI |
| MS.gene006028 | MS.gene024691 | PPI |
| MS.gene22302 | MS.gene024691 | PPI |
| MS.gene61100 | MS.gene024691 | PPI |
| MS.gene024691 | MS.gene058332 | PPI |
| MS.gene21669 | MS.gene024691 | PPI |
| MS.gene000931 | MS.gene024691 | PPI |
| MS.gene55805 | MS.gene024691 | PPI |
| MS.gene60814 | MS.gene024691 | PPI |
| MS.gene024691 | MS.gene31166 | PPI |
| MS.gene041727 | MS.gene024691 | PPI |
| MS.gene030443 | MS.gene024691 | PPI |
| MS.gene024691 | MS.gene052130 | PPI |
| MS.gene069594 | MS.gene024691 | PPI |
| MS.gene72188 | MS.gene024691 | PPI |
| MS.gene22301 | MS.gene024691 | PPI |
| MS.gene048934 | MS.gene024691 | PPI |
| MS.gene024691 | MS.gene06078 | PPI |
| MS.gene024691 | MS.gene00065 | PPI |
| MS.gene55903 | MS.gene024691 | PPI |
| MS.gene45481 | MS.gene024691 | PPI |
| MS.gene021092 | MS.gene024691 | PPI |
| MS.gene024690 | MS.gene024691 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024691.t1 | MTR_5g009160 | 96.562 | 349 | 12 | 0 | 1 | 349 | 1 | 349 | 0.0 | 698 |
| MS.gene024691.t1 | MTR_5g009170 | 91.066 | 347 | 31 | 0 | 3 | 349 | 46 | 392 | 0.0 | 671 |
| MS.gene024691.t1 | MTR_8g099535 | 82.081 | 346 | 62 | 0 | 1 | 346 | 1 | 346 | 0.0 | 608 |
| MS.gene024691.t1 | MTR_5g009160 | 92.606 | 284 | 21 | 0 | 66 | 349 | 3 | 286 | 0.0 | 552 |
| MS.gene024691.t1 | MTR_8g096880 | 65.306 | 343 | 117 | 2 | 2 | 342 | 4 | 346 | 1.26e-167 | 471 |
| MS.gene024691.t1 | MTR_4g134490 | 65.396 | 341 | 116 | 2 | 4 | 342 | 25 | 365 | 4.01e-167 | 471 |
| MS.gene024691.t1 | MTR_4g134490 | 64.265 | 347 | 116 | 3 | 4 | 342 | 25 | 371 | 1.65e-164 | 464 |
| MS.gene024691.t1 | MTR_5g009160 | 92.444 | 225 | 17 | 0 | 66 | 290 | 3 | 227 | 1.79e-155 | 436 |
| MS.gene024691.t1 | MTR_8g096880 | 64.375 | 320 | 112 | 2 | 2 | 319 | 4 | 323 | 5.35e-150 | 425 |
| MS.gene024691.t1 | MTR_8g096880 | 64.605 | 291 | 101 | 2 | 2 | 290 | 4 | 294 | 1.28e-136 | 391 |
| MS.gene024691.t1 | MTR_8g089180 | 41.261 | 349 | 183 | 6 | 6 | 343 | 73 | 410 | 1.43e-79 | 249 |
| MS.gene024691.t1 | MTR_8g089180 | 41.261 | 349 | 183 | 6 | 6 | 343 | 73 | 410 | 1.43e-79 | 249 |
| MS.gene024691.t1 | MTR_2g032100 | 40.171 | 351 | 188 | 6 | 6 | 345 | 73 | 412 | 4.63e-78 | 245 |
| MS.gene024691.t1 | MTR_2g032100 | 41.753 | 194 | 111 | 2 | 6 | 199 | 73 | 264 | 2.28e-43 | 152 |
| MS.gene024691.t1 | MTR_8g099285 | 81.481 | 54 | 10 | 0 | 235 | 288 | 3 | 56 | 1.20e-23 | 92.8 |
| MS.gene024691.t1 | MTR_4g102270 | 27.606 | 355 | 209 | 13 | 2 | 334 | 91 | 419 | 3.37e-22 | 97.4 |
| MS.gene024691.t1 | MTR_0354s0040 | 27.298 | 359 | 213 | 13 | 2 | 336 | 80 | 414 | 1.51e-21 | 95.1 |
| MS.gene024691.t1 | MTR_1g009600 | 28.490 | 351 | 210 | 14 | 4 | 343 | 5 | 325 | 1.97e-21 | 95.9 |
| MS.gene024691.t1 | MTR_4g024600 | 27.019 | 359 | 214 | 12 | 2 | 336 | 99 | 433 | 3.83e-21 | 94.4 |
| MS.gene024691.t1 | MTR_4g129820 | 26.891 | 357 | 220 | 13 | 5 | 343 | 96 | 429 | 5.29e-21 | 94.0 |
| MS.gene024691.t1 | MTR_3g084090 | 27.606 | 355 | 209 | 14 | 2 | 334 | 97 | 425 | 1.08e-20 | 93.2 |
| MS.gene024691.t1 | MTR_5g011940 | 25.779 | 353 | 212 | 13 | 5 | 334 | 91 | 416 | 2.16e-19 | 89.0 |
| MS.gene024691.t1 | MTR_1g088480 | 26.543 | 324 | 188 | 15 | 6 | 321 | 120 | 401 | 3.35e-15 | 76.6 |
| MS.gene024691.t1 | MTR_4g120030 | 26.727 | 333 | 192 | 16 | 3 | 326 | 110 | 399 | 8.17e-14 | 72.4 |
| MS.gene024691.t1 | MTR_4g063600 | 26.888 | 331 | 202 | 12 | 2 | 326 | 30 | 326 | 1.42e-12 | 68.2 |
| MS.gene024691.t1 | MTR_7g108490 | 25.220 | 341 | 207 | 12 | 6 | 338 | 17 | 317 | 8.21e-11 | 62.8 |
| MS.gene024691.t1 | MTR_7g108490 | 25.220 | 341 | 207 | 12 | 6 | 338 | 16 | 316 | 8.23e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024691.t1 | AT4G10960 | 80.290 | 345 | 68 | 0 | 1 | 345 | 1 | 345 | 0.0 | 586 |
| MS.gene024691.t1 | AT4G23920 | 80.357 | 336 | 66 | 0 | 4 | 339 | 3 | 338 | 0.0 | 570 |
| MS.gene024691.t1 | AT1G64440 | 76.968 | 343 | 79 | 0 | 6 | 348 | 5 | 347 | 0.0 | 567 |
| MS.gene024691.t1 | AT1G63180 | 65.103 | 341 | 117 | 2 | 4 | 342 | 7 | 347 | 7.87e-169 | 474 |
| MS.gene024691.t1 | AT1G12780 | 64.223 | 341 | 120 | 2 | 4 | 342 | 7 | 347 | 1.38e-166 | 468 |
| MS.gene024691.t1 | AT1G63180 | 63.051 | 295 | 106 | 3 | 4 | 295 | 7 | 301 | 3.91e-136 | 389 |
| MS.gene024691.t1 | AT1G30620 | 42.373 | 354 | 182 | 6 | 6 | 348 | 72 | 414 | 1.08e-83 | 260 |
| MS.gene024691.t1 | AT1G30620 | 42.373 | 354 | 182 | 6 | 6 | 348 | 73 | 415 | 1.17e-83 | 260 |
| MS.gene024691.t1 | AT1G30620 | 42.373 | 354 | 182 | 6 | 6 | 348 | 73 | 415 | 1.17e-83 | 260 |
| MS.gene024691.t1 | AT1G30620 | 42.373 | 354 | 182 | 6 | 6 | 348 | 73 | 415 | 1.17e-83 | 260 |
| MS.gene024691.t1 | AT1G30620 | 42.373 | 354 | 182 | 6 | 6 | 348 | 73 | 415 | 1.17e-83 | 260 |
| MS.gene024691.t1 | AT5G44480 | 39.655 | 348 | 188 | 6 | 6 | 342 | 73 | 409 | 7.79e-78 | 244 |
| MS.gene024691.t1 | AT5G44480 | 39.655 | 348 | 188 | 6 | 6 | 342 | 73 | 409 | 7.79e-78 | 244 |
| MS.gene024691.t1 | AT5G44480 | 39.655 | 348 | 188 | 6 | 6 | 342 | 73 | 409 | 7.79e-78 | 244 |
| MS.gene024691.t1 | AT5G44480 | 39.655 | 348 | 188 | 6 | 6 | 342 | 97 | 433 | 1.45e-77 | 244 |
| MS.gene024691.t1 | AT4G20460 | 39.886 | 351 | 189 | 6 | 6 | 345 | 72 | 411 | 3.93e-76 | 240 |
| MS.gene024691.t1 | AT1G30620 | 46.392 | 194 | 102 | 2 | 6 | 199 | 73 | 264 | 4.67e-50 | 169 |
| MS.gene024691.t1 | AT2G34850 | 41.202 | 233 | 130 | 4 | 117 | 345 | 1 | 230 | 3.06e-47 | 160 |
| MS.gene024691.t1 | AT2G34850 | 41.202 | 233 | 130 | 4 | 117 | 345 | 1 | 230 | 3.06e-47 | 160 |
| MS.gene024691.t1 | AT2G34850 | 41.202 | 233 | 130 | 4 | 117 | 345 | 1 | 230 | 3.06e-47 | 160 |
| MS.gene024691.t1 | AT2G34850 | 41.202 | 233 | 130 | 4 | 117 | 345 | 1 | 230 | 3.06e-47 | 160 |
| MS.gene024691.t1 | AT4G00110 | 28.571 | 336 | 194 | 13 | 5 | 319 | 92 | 402 | 4.05e-23 | 100 |
| MS.gene024691.t1 | AT2G45310 | 27.794 | 349 | 216 | 12 | 2 | 334 | 95 | 423 | 4.28e-23 | 100 |
| MS.gene024691.t1 | AT1G02000 | 27.119 | 354 | 212 | 13 | 2 | 334 | 90 | 418 | 1.69e-22 | 98.2 |
| MS.gene024691.t1 | AT3G23820 | 27.666 | 347 | 213 | 12 | 5 | 334 | 113 | 438 | 3.15e-20 | 91.7 |
| MS.gene024691.t1 | AT4G12250 | 26.912 | 353 | 208 | 13 | 5 | 334 | 97 | 422 | 1.24e-18 | 87.0 |
| MS.gene024691.t1 | AT4G30440 | 26.741 | 359 | 216 | 15 | 5 | 342 | 89 | 421 | 2.11e-17 | 83.2 |
| MS.gene024691.t1 | AT3G14790 | 26.496 | 351 | 217 | 13 | 4 | 343 | 7 | 327 | 2.75e-17 | 83.6 |
| MS.gene024691.t1 | AT3G14790 | 26.496 | 351 | 217 | 13 | 4 | 343 | 10 | 330 | 3.37e-17 | 83.2 |
| MS.gene024691.t1 | AT3G53520 | 25.460 | 326 | 204 | 12 | 6 | 326 | 122 | 413 | 1.04e-15 | 78.2 |
| MS.gene024691.t1 | AT2G47650 | 26.786 | 336 | 199 | 15 | 6 | 330 | 123 | 422 | 2.09e-15 | 77.4 |
| MS.gene024691.t1 | AT3G62830 | 26.786 | 336 | 199 | 15 | 6 | 330 | 121 | 420 | 3.39e-15 | 76.6 |
| MS.gene024691.t1 | AT3G62830 | 26.786 | 336 | 199 | 15 | 6 | 330 | 121 | 420 | 3.39e-15 | 76.6 |
| MS.gene024691.t1 | AT2G47650 | 27.778 | 342 | 194 | 18 | 6 | 330 | 123 | 428 | 3.79e-14 | 73.6 |
| MS.gene024691.t1 | AT3G53520 | 25.460 | 326 | 202 | 13 | 6 | 326 | 122 | 411 | 4.86e-14 | 73.2 |
| MS.gene024691.t1 | AT2G28760 | 26.667 | 330 | 204 | 13 | 2 | 326 | 29 | 325 | 9.09e-13 | 68.9 |
| MS.gene024691.t1 | AT2G28760 | 26.667 | 330 | 204 | 13 | 2 | 326 | 29 | 325 | 9.09e-13 | 68.9 |
| MS.gene024691.t1 | AT2G28760 | 26.667 | 330 | 204 | 13 | 2 | 326 | 29 | 325 | 9.09e-13 | 68.9 |
| MS.gene024691.t1 | AT2G28760 | 26.667 | 330 | 204 | 13 | 2 | 326 | 60 | 356 | 1.70e-12 | 68.2 |
| MS.gene024691.t1 | AT3G53520 | 27.347 | 245 | 144 | 10 | 6 | 245 | 122 | 337 | 9.99e-12 | 65.9 |
| MS.gene024691.t1 | AT3G46440 | 26.061 | 330 | 206 | 13 | 2 | 326 | 27 | 323 | 1.99e-11 | 64.7 |
| MS.gene024691.t1 | AT3G46440 | 26.061 | 330 | 206 | 13 | 2 | 326 | 27 | 323 | 1.99e-11 | 64.7 |
| MS.gene024691.t1 | AT5G59290 | 26.140 | 329 | 205 | 13 | 3 | 326 | 44 | 339 | 5.55e-11 | 63.5 |
| MS.gene024691.t1 | AT5G59290 | 26.140 | 329 | 205 | 13 | 3 | 326 | 29 | 324 | 5.58e-11 | 63.5 |
| MS.gene024691.t1 | AT5G59290 | 26.140 | 329 | 205 | 13 | 3 | 326 | 22 | 317 | 5.59e-11 | 63.5 |
Find 91 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAACTCGCCGGTGAATT+TGG | 0.176198 | 5.3:-3245378 | MS.gene024691:CDS |
| CACACCCTAGTGGCTATATT+GGG | 0.298704 | 5.3:-3243581 | MS.gene024691:CDS |
| CATACCTTGGTTCGTCCATA+TGG | 0.301807 | 5.3:+3243874 | None:intergenic |
| GCACACCCTAGTGGCTATAT+TGG | 0.305512 | 5.3:-3243582 | MS.gene024691:CDS |
| TCATCTTCGGCCACTGTATA+TGG | 0.319590 | 5.3:-3243949 | MS.gene024691:CDS |
| TACTACAACAACAATTTGAT+TGG | 0.322512 | 5.3:-3244429 | MS.gene024691:CDS |
| AGGAACTCGCCGGTGAATTT+GGG | 0.357688 | 5.3:-3245377 | MS.gene024691:CDS |
| ATGAATGGCATGAGATTGTT+TGG | 0.393421 | 5.3:+3243540 | None:intergenic |
| GATTGGGACAGTCACTCTAT+TGG | 0.399156 | 5.3:-3244412 | MS.gene024691:CDS |
| TATAATACAGTTGATGGTAC+TGG | 0.401528 | 5.3:-3243465 | MS.gene024691:CDS |
| AAACTAGAAGAAGCTGATAT+AGG | 0.407820 | 5.3:-3243071 | MS.gene024691:intron |
| TCAGCTTGTGTTCTCATCTT+CGG | 0.414089 | 5.3:-3243962 | MS.gene024691:intron |
| AATGATTATAATACAGTTGA+TGG | 0.420135 | 5.3:-3243471 | MS.gene024691:CDS |
| TGCAGGTAGATCTCCGGGAC+AGG | 0.420498 | 5.3:-3244736 | MS.gene024691:intron |
| TGTGCCGTGATCAATGGAAT+TGG | 0.420702 | 5.3:-3242251 | MS.gene024691:CDS |
| TATAACTTGGGGACAGGAAA+AGG | 0.424798 | 5.3:-3242897 | MS.gene024691:CDS |
| AGTTGCCATTCGCAGAGTTA+AGG | 0.426504 | 5.3:-3245397 | MS.gene024691:CDS |
| AACAAAACAGTACTCGTTAC+CGG | 0.437568 | 5.3:-3245513 | MS.gene024691:CDS |
| CTGTCAGCAGCGAACCCATA+TGG | 0.437623 | 5.3:-3243889 | MS.gene024691:CDS |
| ACTACAACAACAATTTGATT+GGG | 0.444766 | 5.3:-3244428 | MS.gene024691:CDS |
| AGGTTGTGAGGTTTATAACT+TGG | 0.455292 | 5.3:-3242910 | MS.gene024691:CDS |
| CATGTTGTTGATTTAGCAGA+TGG | 0.457410 | 5.3:-3243113 | MS.gene024691:CDS |
| TTCATCGTGCTGAGCCAGAC+TGG | 0.457835 | 5.3:-3243641 | MS.gene024691:CDS |
| GTGAAGGCTGGCCGTAGAAC+TGG | 0.462400 | 5.3:-3242651 | MS.gene024691:CDS |
| CCACTAGGGTGTGCACCCAC+TGG | 0.465198 | 5.3:+3243591 | None:intergenic |
| GGTCACTGCAGGTAGATCTC+CGG | 0.465342 | 5.3:-3244742 | MS.gene024691:intron |
| GCTCTAGAGCGGCCCTGTCC+CGG | 0.465355 | 5.3:+3244723 | None:intergenic |
| AGGAAAAGGAACATCAGTTT+CGG | 0.471312 | 5.3:-3242883 | MS.gene024691:CDS |
| GGTGTGGCTACCAATGTAAC+CGG | 0.472958 | 5.3:+3245485 | None:intergenic |
| ACCGCTACTTGCTGAATGAA+TGG | 0.479414 | 5.3:+3243525 | None:intergenic |
| GAGGTTTATAACTTGGGGAC+AGG | 0.481105 | 5.3:-3242903 | MS.gene024691:CDS |
| GGTTGTGAGGTTTATAACTT+GGG | 0.481196 | 5.3:-3242909 | MS.gene024691:CDS |
| ATGAAATGTGCCGTGATCAA+TGG | 0.481865 | 5.3:-3242257 | MS.gene024691:CDS |
| ATACCTTGGTTCGTCCATAT+GGG | 0.491731 | 5.3:+3243875 | None:intergenic |
| ATAATACAGTTGATGGTACT+GGG | 0.493443 | 5.3:-3243464 | MS.gene024691:CDS |
| CACTAGGGTGTGCACCCACT+GGG | 0.501822 | 5.3:+3243592 | None:intergenic |
| CACTGTATATGGTTGGCAAA+AGG | 0.503341 | 5.3:-3243938 | MS.gene024691:CDS |
| TCAGAAAATTCCACTTGTGA+AGG | 0.507254 | 5.3:-3242667 | MS.gene024691:intron |
| AGGAACATCAGTTTCGGAGA+TGG | 0.521126 | 5.3:-3242877 | MS.gene024691:CDS |
| GTCACTGCAGGTAGATCTCC+GGG | 0.521168 | 5.3:-3244741 | MS.gene024691:intron |
| AAAATTCCACTTGTGAAGGC+TGG | 0.523612 | 5.3:-3242663 | MS.gene024691:CDS |
| CTGAATATCCATAGCCGTAA+GGG | 0.530800 | 5.3:+3242217 | None:intergenic |
| TTTCAGCATCACCAGTTCTA+CGG | 0.535483 | 5.3:+3242640 | None:intergenic |
| AGCAAGTAGCGGTTGGCAGA+CGG | 0.538955 | 5.3:-3243515 | MS.gene024691:CDS |
| ACCGTTCTTCAGCTCTTACT+CGG | 0.540014 | 5.3:-3245465 | MS.gene024691:CDS |
| GTGCCGTGATCAATGGAATT+GGG | 0.542969 | 5.3:-3242250 | MS.gene024691:CDS |
| TTCATTCAGCAAGTAGCGGT+TGG | 0.543808 | 5.3:-3243522 | MS.gene024691:CDS |
| ACCAATGTAACCGGCACCAC+CGG | 0.548366 | 5.3:+3245494 | None:intergenic |
| GAGGTTATTCCCAAATTCAC+CGG | 0.555981 | 5.3:+3245368 | None:intergenic |
| ACCGGTGGTGCCGGTTACAT+TGG | 0.559065 | 5.3:-3245495 | MS.gene024691:CDS |
| AGAGGAAACTCTTCTGTACA+TGG | 0.560504 | 5.3:+3243910 | None:intergenic |
| TTGTTGTTGTAGTAGAGTAA+CGG | 0.566441 | 5.3:+3244438 | None:intergenic |
| TCTGAATATCCATAGCCGTA+AGG | 0.567598 | 5.3:+3242216 | None:intergenic |
| AAGCTGAAAGAGAACTCAAG+TGG | 0.569400 | 5.3:-3242596 | MS.gene024691:CDS |
| AGTCACTCTATTGGAAGTCA+TGG | 0.578770 | 5.3:-3244403 | MS.gene024691:CDS |
| CCTCCCCAATATAGCCACTA+GGG | 0.580691 | 5.3:+3243577 | None:intergenic |
| TAACTATAAAGGTTAATCTG+TGG | 0.581304 | 5.3:+3242191 | None:intergenic |
| GGCTGCTCACGGATGCAAGA+AGG | 0.586348 | 5.3:-3244382 | MS.gene024691:intron |
| CTTCGGCCACTGTATATGGT+TGG | 0.592056 | 5.3:-3243945 | MS.gene024691:CDS |
| GCAGGTAGATCTCCGGGACA+GGG | 0.592481 | 5.3:-3244735 | MS.gene024691:intron |
| TCGAGATACTTTAACCCAGT+GGG | 0.592670 | 5.3:-3243606 | MS.gene024691:CDS |
| TTTGCTGGACTGAAAGCAGT+AGG | 0.592924 | 5.3:-3244477 | MS.gene024691:CDS |
| TTGGAAGTCATGGCTGCTCA+CGG | 0.593623 | 5.3:-3244393 | MS.gene024691:CDS |
| TCTGCGAATGGCAACTTCTG+AGG | 0.594582 | 5.3:+3245404 | None:intergenic |
| GTACTCGTTACCGGTGGTGC+CGG | 0.597690 | 5.3:-3245504 | MS.gene024691:CDS |
| TCCTCCCCAATATAGCCACT+AGG | 0.600307 | 5.3:+3243576 | None:intergenic |
| CTACGGCCAGCCTTCACAAG+TGG | 0.605063 | 5.3:+3242657 | None:intergenic |
| TAGCCCAATTCCATTGATCA+CGG | 0.615843 | 5.3:+3242247 | None:intergenic |
| TGTATATGGTTGGCAAAAGG+AGG | 0.620907 | 5.3:-3243935 | MS.gene024691:CDS |
| ATGTTGTTGATTTAGCAGAT+GGG | 0.622460 | 5.3:-3243112 | MS.gene024691:CDS |
| CGCAGAGTTAAGGAACTCGC+CGG | 0.626013 | 5.3:-3245387 | MS.gene024691:CDS |
| GAGTTCCTTAACTCTGCGAA+TGG | 0.627926 | 5.3:+3245392 | None:intergenic |
| GCCATTCATTCAGCAAGTAG+CGG | 0.628195 | 5.3:-3243526 | MS.gene024691:CDS |
| ATCGAGATACTTTAACCCAG+TGG | 0.629627 | 5.3:-3243607 | MS.gene024691:CDS |
| TATGGGTTCGCTGCTGACAG+AGG | 0.637108 | 5.3:+3243892 | None:intergenic |
| CCCTAGTGGCTATATTGGGG+AGG | 0.638014 | 5.3:-3243577 | MS.gene024691:CDS |
| GCCGAGTAAGAGCTGAAGAA+CGG | 0.648191 | 5.3:+3245464 | None:intergenic |
| ACACCCTAGTGGCTATATTG+GGG | 0.651389 | 5.3:-3243580 | MS.gene024691:CDS |
| GAATAACCTCAGCTTTCACA+AGG | 0.652255 | 5.3:-3245355 | MS.gene024691:intron |
| AGAGTACCTTGTGAAAGCTG+AGG | 0.656352 | 5.3:+3245349 | None:intergenic |
| ATCAAGATTATCAACGACGA+TGG | 0.661327 | 5.3:+3245431 | None:intergenic |
| GTTGTGAGGTTTATAACTTG+GGG | 0.664297 | 5.3:-3242908 | MS.gene024691:CDS |
| GTGTATGTGTACAGGTTGTG+AGG | 0.674535 | 5.3:-3242922 | MS.gene024691:intron |
| GAACCCATATGGACGAACCA+AGG | 0.682147 | 5.3:-3243878 | MS.gene024691:intron |
| TAATACAGTTGATGGTACTG+GGG | 0.702541 | 5.3:-3243463 | MS.gene024691:intron |
| CCAGTGGGTGCACACCCTAG+TGG | 0.710008 | 5.3:-3243591 | MS.gene024691:CDS |
| AGATTGTTTGGAACTCCACG+AGG | 0.719992 | 5.3:+3243552 | None:intergenic |
| GTAAGAGCTGAAGAACGGTG+TGG | 0.732697 | 5.3:+3245469 | None:intergenic |
| GTTCTTCAGCTCTTACTCGG+CGG | 0.738654 | 5.3:-3245462 | MS.gene024691:CDS |
| TATATTGGGGAGGATCCTCG+TGG | 0.740497 | 5.3:-3243567 | MS.gene024691:CDS |
| AAAACAGTACTCGTTACCGG+TGG | 0.751642 | 5.3:-3245510 | MS.gene024691:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATAAATAATGATAAATT+TGG | + | chr5.3:3244684-3244703 | None:intergenic | 10.0% |
| !! | AGAAAAATATAATAACATAA+AGG | + | chr5.3:3245405-3245424 | None:intergenic | 10.0% |
| !!! | TTTTTATTCATTTATATTGT+AGG | - | chr5.3:3243204-3243223 | MS.gene024691:intron | 10.0% |
| !! | AAAATATAATAACATAAAGG+TGG | + | chr5.3:3245402-3245421 | None:intergenic | 15.0% |
| !! | AAATAGATATTTAACTGATT+GGG | - | chr5.3:3245170-3245189 | MS.gene024691:intron | 15.0% |
| !! | CAAAATATAGTTAAAACTAT+TGG | + | chr5.3:3242961-3242980 | None:intergenic | 15.0% |
| !!! | CAATAGTTTTAACTATATTT+TGG | - | chr5.3:3242959-3242978 | MS.gene024691:intron | 15.0% |
| !!! | TATTTTATTTATTCTACCAA+AGG | - | chr5.3:3242860-3242879 | MS.gene024691:CDS | 15.0% |
| !!! | TGTAGTATTTTTTTATTTTG+TGG | - | chr5.3:3242433-3242452 | MS.gene024691:intron | 15.0% |
| !!! | TGTTCTTTTTTAAGAATTAT+TGG | - | chr5.3:3242578-3242597 | MS.gene024691:intron | 15.0% |
| !!! | TTTTTTTATTTTGTGGATTT+AGG | - | chr5.3:3242440-3242459 | MS.gene024691:intron | 15.0% |
| !! | AATGATTATAATACAGTTGA+TGG | - | chr5.3:3244251-3244270 | MS.gene024691:intron | 20.0% |
| !! | AATTCTTAAAAAAGAACATG+AGG | + | chr5.3:3242576-3242595 | None:intergenic | 20.0% |
| !! | CAAATAGATATTTAACTGAT+TGG | - | chr5.3:3245169-3245188 | MS.gene024691:intron | 20.0% |
| !! | TCATCTTAATGATATATTCT+AGG | - | chr5.3:3245344-3245363 | MS.gene024691:intron | 20.0% |
| !! | TGACAAATTGTTTATTTGTT+CGG | - | chr5.3:3242805-3242824 | MS.gene024691:intron | 20.0% |
| !! | TTAATATGAACAGATTTCTA+TGG | - | chr5.3:3243424-3243443 | MS.gene024691:intron | 20.0% |
| !! | TTAGAATGGAAAATAAATAC+AGG | + | chr5.3:3244521-3244540 | None:intergenic | 20.0% |
| !! | TTCAAGCAAAATTTCAAAAA+AGG | + | chr5.3:3244463-3244482 | None:intergenic | 20.0% |
| !!! | AAAAGTTATCTGATTTTACA+GGG | - | chr5.3:3245427-3245446 | MS.gene024691:CDS | 20.0% |
| !!! | TAAAAGTTATCTGATTTTAC+AGG | - | chr5.3:3245426-3245445 | MS.gene024691:CDS | 20.0% |
| !!! | TAGACTAATATTTCTTTTTC+TGG | - | chr5.3:3244901-3244920 | MS.gene024691:intron | 20.0% |
| !!! | TTGATTTGATGTAATTTTTG+TGG | - | chr5.3:3242652-3242671 | MS.gene024691:CDS | 20.0% |
| !!! | TTTAAATTTTTTGCTTGTCT+TGG | - | chr5.3:3243991-3244010 | MS.gene024691:intron | 20.0% |
| ! | AAAAACAAGCAAGAACAAAT+TGG | + | chr5.3:3242470-3242489 | None:intergenic | 25.0% |
| ! | AAAACATGGAAAGATTATCT+CGG | + | chr5.3:3245036-3245055 | None:intergenic | 25.0% |
| ! | AAATCATCCAATAAGATCAA+TGG | + | chr5.3:3244566-3244585 | None:intergenic | 25.0% |
| ! | ACCATGAGTAAATATTTATG+TGG | - | chr5.3:3243589-3243608 | MS.gene024691:CDS | 25.0% |
| ! | ACTACAACAACAATTTGATT+GGG | - | chr5.3:3243294-3243313 | MS.gene024691:intron | 25.0% |
| ! | AGAAAGCTTAGAACAATATT+TGG | + | chr5.3:3242706-3242725 | None:intergenic | 25.0% |
| ! | ATCAATGGTAAAGAAATCAA+AGG | + | chr5.3:3244551-3244570 | None:intergenic | 25.0% |
| ! | GTAACATACAAGCAATATTT+AGG | + | chr5.3:3243537-3243556 | None:intergenic | 25.0% |
| ! | TACTACAACAACAATTTGAT+TGG | - | chr5.3:3243293-3243312 | MS.gene024691:intron | 25.0% |
| ! | TTATTGGATGATTTATTCTC+AGG | - | chr5.3:3244572-3244591 | MS.gene024691:intron | 25.0% |
| ! | TTCATCATTCTCTTCAAATT+TGG | - | chr5.3:3245241-3245260 | MS.gene024691:intron | 25.0% |
| ! | TTCTTTACCATTGATCTTAT+TGG | - | chr5.3:3244556-3244575 | MS.gene024691:intron | 25.0% |
| !! | GATAATATTATTTTCCAGTC+TGG | + | chr5.3:3244098-3244117 | None:intergenic | 25.0% |
| !! | TATGATTTGGAAACTAGTTA+GGG | - | chr5.3:3243867-3243886 | MS.gene024691:intron | 25.0% |
| AAACTAGAAGAAGCTGATAT+AGG | - | chr5.3:3244651-3244670 | MS.gene024691:intron | 30.0% | |
| AGAGAATGATGAACATTAAC+AGG | + | chr5.3:3245234-3245253 | None:intergenic | 30.0% | |
| AGAGTTCCTTATTATTGCTT+GGG | - | chr5.3:3243480-3243499 | MS.gene024691:CDS | 30.0% | |
| ATTCTACCAAAGGAAATCAT+AGG | - | chr5.3:3242870-3242889 | MS.gene024691:CDS | 30.0% | |
| CAATATTTAGGCAATTCAGT+TGG | + | chr5.3:3243525-3243544 | None:intergenic | 30.0% | |
| GATGATTTATTCTCAGGTTA+GGG | - | chr5.3:3244578-3244597 | MS.gene024691:intron | 30.0% | |
| GCCACATAAATATTTACTCA+TGG | + | chr5.3:3243593-3243612 | None:intergenic | 30.0% | |
| TAATAACATAAAGGTGGAGA+AGG | + | chr5.3:3245396-3245415 | None:intergenic | 30.0% | |
| TACAACTATAAGATAACACG+AGG | + | chr5.3:3243154-3243173 | None:intergenic | 30.0% | |
| TCAAAAAAGGCCAATACAAA+CGG | + | chr5.3:3244450-3244469 | None:intergenic | 30.0% | |
| TTGTATCCCAAGCAATAATA+AGG | + | chr5.3:3243489-3243508 | None:intergenic | 30.0% | |
| ! | ATTTTTGCTTCCACAAAGTA+AGG | - | chr5.3:3243024-3243043 | MS.gene024691:intron | 30.0% |
| ! | CACATGCTTTAATTTCTTGT+GGG | - | chr5.3:3244989-3245008 | MS.gene024691:intron | 30.0% |
| ! | GTATGATTTGGAAACTAGTT+AGG | - | chr5.3:3243866-3243885 | MS.gene024691:intron | 30.0% |
| ! | TCAAAGGTAGATCTTTAGAA+TGG | + | chr5.3:3244535-3244554 | None:intergenic | 30.0% |
| ! | TCACATGCTTTAATTTCTTG+TGG | - | chr5.3:3244988-3245007 | MS.gene024691:intron | 30.0% |
| ! | TCTTCAAATTTGGAACTGTT+TGG | - | chr5.3:3245251-3245270 | MS.gene024691:intron | 30.0% |
| ! | TGATTTTACAGGGCAAAATA+TGG | - | chr5.3:3245437-3245456 | MS.gene024691:CDS | 30.0% |
| ! | TTGTTGTTGTAGTAGAGTAA+CGG | + | chr5.3:3243287-3243306 | None:intergenic | 30.0% |
| !! | AGTGGAATTTTCTGAAAACA+TGG | + | chr5.3:3245050-3245069 | None:intergenic | 30.0% |
| !! | ATAATACAGTTGATGGTACT+GGG | - | chr5.3:3244258-3244277 | MS.gene024691:intron | 30.0% |
| !! | ATGTTGTTGATTTAGCAGAT+GGG | - | chr5.3:3244610-3244629 | MS.gene024691:intron | 30.0% |
| !! | TATAATACAGTTGATGGTAC+TGG | - | chr5.3:3244257-3244276 | MS.gene024691:intron | 30.0% |
| !! | TTCTCTTTCAGCTTTTTCTA+TGG | + | chr5.3:3245120-3245139 | None:intergenic | 30.0% |
| !!! | TTATGTTTTTTTCCCACTCT+AGG | - | chr5.3:3242751-3242770 | MS.gene024691:intron | 30.0% |
| AAAGGAAATCATAGGTGCTT+CGG | - | chr5.3:3242878-3242897 | MS.gene024691:CDS | 35.0% | |
| AACAAAACAGTACTCGTTAC+CGG | - | chr5.3:3242209-3242228 | MS.gene024691:CDS | 35.0% | |
| AACTGAGCATCAAAATAGGA+AGG | + | chr5.3:3243073-3243092 | None:intergenic | 35.0% | |
| AATAATGTCTTGTCCTAGAG+TGG | + | chr5.3:3242767-3242786 | None:intergenic | 35.0% | |
| ACTCAACTGAGCATCAAAAT+AGG | + | chr5.3:3243077-3243096 | None:intergenic | 35.0% | |
| AGGAAAAGGAACATCAGTTT+CGG | - | chr5.3:3244839-3244858 | MS.gene024691:intron | 35.0% | |
| AGGGTAGTTATGTGTCAAAA+AGG | + | chr5.3:3243657-3243676 | None:intergenic | 35.0% | |
| AGGTTGTGAGGTTTATAACT+TGG | - | chr5.3:3244812-3244831 | MS.gene024691:intron | 35.0% | |
| ATAATGTCTTGTCCTAGAGT+GGG | + | chr5.3:3242766-3242785 | None:intergenic | 35.0% | |
| ATCAAGATTATCAACGACGA+TGG | + | chr5.3:3242294-3242313 | None:intergenic | 35.0% | |
| ATGAATGGCATGAGATTGTT+TGG | + | chr5.3:3244185-3244204 | None:intergenic | 35.0% | |
| CAAAAAAGGCCAATACAAAC+GGG | + | chr5.3:3244449-3244468 | None:intergenic | 35.0% | |
| CAGAGTTCCTTATTATTGCT+TGG | - | chr5.3:3243479-3243498 | MS.gene024691:CDS | 35.0% | |
| CATTTGTTCGAAGCTGAAAT+TGG | - | chr5.3:3243890-3243909 | MS.gene024691:CDS | 35.0% | |
| CTAGTTTCCAAATCATACCT+TGG | + | chr5.3:3243864-3243883 | None:intergenic | 35.0% | |
| GACATGAAAGTTGACAACAA+CGG | + | chr5.3:3244947-3244966 | None:intergenic | 35.0% | |
| GATATATTCTAGGCGTAGTT+CGG | - | chr5.3:3245354-3245373 | MS.gene024691:intron | 35.0% | |
| GGATGATTTATTCTCAGGTT+AGG | - | chr5.3:3244577-3244596 | MS.gene024691:intron | 35.0% | |
| GGGTAGTTATGTGTCAAAAA+GGG | + | chr5.3:3243656-3243675 | None:intergenic | 35.0% | |
| GGTTGTGAGGTTTATAACTT+GGG | - | chr5.3:3244813-3244832 | MS.gene024691:intron | 35.0% | |
| GTTGTGAGGTTTATAACTTG+GGG | - | chr5.3:3244814-3244833 | MS.gene024691:intron | 35.0% | |
| TCAGAAAATTCCACTTGTGA+AGG | - | chr5.3:3245055-3245074 | MS.gene024691:intron | 35.0% | |
| TGAGCAAAAAAAACGTGCAA+GGG | + | chr5.3:3242401-3242420 | None:intergenic | 35.0% | |
| TGCAGGACATAAAAACAAGA+AGG | + | chr5.3:3243372-3243391 | None:intergenic | 35.0% | |
| TTGAGCAAAAAAAACGTGCA+AGG | + | chr5.3:3242402-3242421 | None:intergenic | 35.0% | |
| TTTCCAAAAATTGTCAGTGC+AGG | + | chr5.3:3244233-3244252 | None:intergenic | 35.0% | |
| ! | TTCACTCAACTTTTCTCTCT+AGG | + | chr5.3:3244324-3244343 | None:intergenic | 35.0% |
| !! | AGCAAAAATTTGCTCTAGAG+CGG | + | chr5.3:3243013-3243032 | None:intergenic | 35.0% |
| !! | CATGTTGTTGATTTAGCAGA+TGG | - | chr5.3:3244609-3244628 | MS.gene024691:intron | 35.0% |
| !! | TAATACAGTTGATGGTACTG+GGG | - | chr5.3:3244259-3244278 | MS.gene024691:intron | 35.0% |
| !! | TACCCTGAAGTGTTTTGTAA+GGG | - | chr5.3:3243671-3243690 | MS.gene024691:CDS | 35.0% |
| !!! | AACTATATTTTGGTCACTGC+AGG | - | chr5.3:3242969-3242988 | MS.gene024691:intron | 35.0% |
| !!! | GTCTCTGCTAGCTATTTTTT+GGG | - | chr5.3:3243929-3243948 | MS.gene024691:CDS | 35.0% |
| !!! | TCTCTGCTAGCTATTTTTTG+GGG | - | chr5.3:3243930-3243949 | MS.gene024691:CDS | 35.0% |
| !!! | TGTCTCTGCTAGCTATTTTT+TGG | - | chr5.3:3243928-3243947 | MS.gene024691:CDS | 35.0% |
| AAAATTCCACTTGTGAAGGC+TGG | - | chr5.3:3245059-3245078 | MS.gene024691:intron | 40.0% | |
| AAAGTTGACAACAACGGTGA+AGG | + | chr5.3:3244941-3244960 | None:intergenic | 40.0% | |
| AAATGACCGAACTGTGGTTA+AGG | + | chr5.3:3244401-3244420 | None:intergenic | 40.0% | |
| AAGCTGAAAGAGAACTCAAG+TGG | - | chr5.3:3245126-3245145 | MS.gene024691:intron | 40.0% | |
| AGAGGAAACTCTTCTGTACA+TGG | + | chr5.3:3243815-3243834 | None:intergenic | 40.0% | |
| AGTCACTCTATTGGAAGTCA+TGG | - | chr5.3:3243319-3243338 | MS.gene024691:intron | 40.0% | |
| ATCGAGATACTTTAACCCAG+TGG | - | chr5.3:3244115-3244134 | MS.gene024691:intron | 40.0% | |
| ATGAAATGTGCCGTGATCAA+TGG | - | chr5.3:3245465-3245484 | MS.gene024691:CDS | 40.0% | |
| CACTCTAACAGAACAATCCA+AGG | + | chr5.3:3244498-3244517 | None:intergenic | 40.0% | |
| CACTGTATATGGTTGGCAAA+AGG | - | chr5.3:3243784-3243803 | MS.gene024691:intron | 40.0% | |
| CATATGAAATGACCGAACTG+TGG | + | chr5.3:3244407-3244426 | None:intergenic | 40.0% | |
| CGTGTTAGTGGAAAATTCTG+AGG | - | chr5.3:3244722-3244741 | MS.gene024691:CDS | 40.0% | |
| CTCTCATCATCCTTACTTTG+TGG | + | chr5.3:3243037-3243056 | None:intergenic | 40.0% | |
| CTGAATATCCATAGCCGTAA+GGG | + | chr5.3:3245508-3245527 | None:intergenic | 40.0% | |
| GAATAACCTCAGCTTTCACA+AGG | - | chr5.3:3242367-3242386 | MS.gene024691:intron | 40.0% | |
| GAGGTTATTCCCAAATTCAC+CGG | + | chr5.3:3242357-3242376 | None:intergenic | 40.0% | |
| GGTGCTTCGGTTACTTAATT+TGG | - | chr5.3:3242891-3242910 | MS.gene024691:CDS | 40.0% | |
| GTGTCAAAAAGGGAACCTAA+GGG | + | chr5.3:3243646-3243665 | None:intergenic | 40.0% | |
| TAACAGAACAATCCAAGGAC+AGG | + | chr5.3:3244493-3244512 | None:intergenic | 40.0% | |
| TACTGCTCATAGTTACCCTT+AGG | - | chr5.3:3243628-3243647 | MS.gene024691:CDS | 40.0% | |
| TAGCCCAATTCCATTGATCA+CGG | + | chr5.3:3245478-3245497 | None:intergenic | 40.0% | |
| TATAACTTGGGGACAGGAAA+AGG | - | chr5.3:3244825-3244844 | MS.gene024691:intron | 40.0% | |
| TCAGCTTGTGTTCTCATCTT+CGG | - | chr5.3:3243760-3243779 | MS.gene024691:intron | 40.0% | |
| TCCCCTTACAAAACACTTCA+GGG | + | chr5.3:3243676-3243695 | None:intergenic | 40.0% | |
| TCGAGATACTTTAACCCAGT+GGG | - | chr5.3:3244116-3244135 | MS.gene024691:intron | 40.0% | |
| TCTCTAGGCAAAATTTCAGC+TGG | + | chr5.3:3244309-3244328 | None:intergenic | 40.0% | |
| TCTGAATATCCATAGCCGTA+AGG | + | chr5.3:3245509-3245528 | None:intergenic | 40.0% | |
| TGTATATGGTTGGCAAAAGG+AGG | - | chr5.3:3243787-3243806 | MS.gene024691:intron | 40.0% | |
| TGTGTCAAAAAGGGAACCTA+AGG | + | chr5.3:3243647-3243666 | None:intergenic | 40.0% | |
| TTCAACGTGTGTATGTGTAC+AGG | - | chr5.3:3244792-3244811 | MS.gene024691:intron | 40.0% | |
| TTGAACATACTACCTGTCCT+TGG | - | chr5.3:3244478-3244497 | MS.gene024691:CDS | 40.0% | |
| TTTCAGCATCACCAGTTCTA+CGG | + | chr5.3:3245085-3245104 | None:intergenic | 40.0% | |
| ! | AGAGCTTTTGAACATGCATC+TGG | - | chr5.3:3244870-3244889 | MS.gene024691:intron | 40.0% |
| ! | ATACCTTGGTTCGTCCATAT+GGG | + | chr5.3:3243850-3243869 | None:intergenic | 40.0% |
| ! | ATTTTCCACTAACACGACAC+AGG | + | chr5.3:3244718-3244737 | None:intergenic | 40.0% |
| ! | CGGTTACTTAATTTGGCATC+TGG | - | chr5.3:3242898-3242917 | MS.gene024691:CDS | 40.0% |
| ! | CTTTTGCCAACCATATACAG+TGG | + | chr5.3:3243786-3243805 | None:intergenic | 40.0% |
| ! | GAAGACTCGCTCTTTCATTT+TGG | - | chr5.3:3243126-3243145 | MS.gene024691:CDS | 40.0% |
| ! | GAAGCACCTATGATTTCCTT+TGG | + | chr5.3:3242879-3242898 | None:intergenic | 40.0% |
| ! | GAGCTTTTGAACATGCATCT+GGG | - | chr5.3:3244871-3244890 | MS.gene024691:intron | 40.0% |
| ! | GATGCAGTCATACATTTTGC+TGG | - | chr5.3:3243230-3243249 | MS.gene024691:intron | 40.0% |
| ! | TTTTGAACATGCATCTGGGA+AGG | - | chr5.3:3244875-3244894 | MS.gene024691:intron | 40.0% |
| !! | ACCCTGAAGTGTTTTGTAAG+GGG | - | chr5.3:3243672-3243691 | MS.gene024691:CDS | 40.0% |
| !! | CTACCCTGAAGTGTTTTGTA+AGG | - | chr5.3:3243670-3243689 | MS.gene024691:CDS | 40.0% |
| AAAACAGTACTCGTTACCGG+TGG | - | chr5.3:3242212-3242231 | MS.gene024691:CDS | 45.0% | |
| AAAGGCCAATACAAACGGGA+TGG | + | chr5.3:3244445-3244464 | None:intergenic | 45.0% | |
| ACACCCTAGTGGCTATATTG+GGG | - | chr5.3:3244142-3244161 | MS.gene024691:intron | 45.0% | |
| ACCGTTCTTCAGCTCTTACT+CGG | - | chr5.3:3242257-3242276 | MS.gene024691:CDS | 45.0% | |
| AGCAAAAACCCTTACGGCTA+TGG | - | chr5.3:3245497-3245516 | MS.gene024691:CDS | 45.0% | |
| AGGAACATCAGTTTCGGAGA+TGG | - | chr5.3:3244845-3244864 | MS.gene024691:intron | 45.0% | |
| AGTTGCCATTCGCAGAGTTA+AGG | - | chr5.3:3242325-3242344 | MS.gene024691:intron | 45.0% | |
| ATATTCTAGGCGTAGTTCGG+TGG | - | chr5.3:3245357-3245376 | MS.gene024691:CDS | 45.0% | |
| CACACCCTAGTGGCTATATT+GGG | - | chr5.3:3244141-3244160 | MS.gene024691:intron | 45.0% | |
| CTCCCCTTACAAAACACTTC+AGG | + | chr5.3:3243677-3243696 | None:intergenic | 45.0% | |
| CTTAACCTGTGTCGTGTTAG+TGG | - | chr5.3:3244710-3244729 | MS.gene024691:CDS | 45.0% | |
| GAGGTTTATAACTTGGGGAC+AGG | - | chr5.3:3244819-3244838 | MS.gene024691:intron | 45.0% | |
| GAGTTCCTTAACTCTGCGAA+TGG | + | chr5.3:3242333-3242352 | None:intergenic | 45.0% | |
| GATTGGGACAGTCACTCTAT+TGG | - | chr5.3:3243310-3243329 | MS.gene024691:intron | 45.0% | |
| GCAGCTAAAGTCTATCATGC+AGG | + | chr5.3:3243389-3243408 | None:intergenic | 45.0% | |
| GCCATTCATTCAGCAAGTAG+CGG | - | chr5.3:3244196-3244215 | MS.gene024691:intron | 45.0% | |
| GGACGAACCAAGGTATGATT+TGG | - | chr5.3:3243854-3243873 | MS.gene024691:intron | 45.0% | |
| GTACTGGGGTATGTTATCAC+TGG | - | chr5.3:3244273-3244292 | MS.gene024691:intron | 45.0% | |
| GTGCCGTGATCAATGGAATT+GGG | - | chr5.3:3245472-3245491 | MS.gene024691:CDS | 45.0% | |
| GTGTATGTGTACAGGTTGTG+AGG | - | chr5.3:3244800-3244819 | MS.gene024691:intron | 45.0% | |
| TCATCTTCGGCCACTGTATA+TGG | - | chr5.3:3243773-3243792 | MS.gene024691:intron | 45.0% | |
| TGTGCCGTGATCAATGGAAT+TGG | - | chr5.3:3245471-3245490 | MS.gene024691:CDS | 45.0% | |
| TTCATTCAGCAAGTAGCGGT+TGG | - | chr5.3:3244200-3244219 | MS.gene024691:intron | 45.0% | |
| TTTGCTGGACTGAAAGCAGT+AGG | - | chr5.3:3243245-3243264 | MS.gene024691:intron | 45.0% | |
| ! | ACCGCTACTTGCTGAATGAA+TGG | + | chr5.3:3244200-3244219 | None:intergenic | 45.0% |
| ! | AGAGTACCTTGTGAAAGCTG+AGG | + | chr5.3:3242376-3242395 | None:intergenic | 45.0% |
| ! | AGATTGTTTGGAACTCCACG+AGG | + | chr5.3:3244173-3244192 | None:intergenic | 45.0% |
| ! | CATACCTTGGTTCGTCCATA+TGG | + | chr5.3:3243851-3243870 | None:intergenic | 45.0% |
| !! | AGTGGAAAATTCTGAGGCAG+TGG | - | chr5.3:3244728-3244747 | MS.gene024691:CDS | 45.0% |
| !! | CTGAAGTGTTTTGTAAGGGG+AGG | - | chr5.3:3243675-3243694 | MS.gene024691:intron | 45.0% |
| !! | TGGGCTAGCAAAAACCCTTA+CGG | - | chr5.3:3245491-3245510 | MS.gene024691:CDS | 45.0% |
| AACTGTGGTTAAGGTCGCAC+AGG | + | chr5.3:3244392-3244411 | None:intergenic | 50.0% | |
| AAGGAACTCGCCGGTGAATT+TGG | - | chr5.3:3242344-3242363 | MS.gene024691:intron | 50.0% | |
| ACAACGGTGAAGGTGACAGA+TGG | + | chr5.3:3244931-3244950 | None:intergenic | 50.0% | |
| ACTGTGGTTAAGGTCGCACA+GGG | + | chr5.3:3244391-3244410 | None:intergenic | 50.0% | |
| AGGAACTCGCCGGTGAATTT+GGG | - | chr5.3:3242345-3242364 | MS.gene024691:intron | 50.0% | |
| CCTCCCCAATATAGCCACTA+GGG | + | chr5.3:3244148-3244167 | None:intergenic | 50.0% | |
| CTTCGGCCACTGTATATGGT+TGG | - | chr5.3:3243777-3243796 | MS.gene024691:intron | 50.0% | |
| GAACCCATATGGACGAACCA+AGG | - | chr5.3:3243844-3243863 | MS.gene024691:intron | 50.0% | |
| GCACACCCTAGTGGCTATAT+TGG | - | chr5.3:3244140-3244159 | MS.gene024691:intron | 50.0% | |
| GCCAATACAAACGGGATGGA+GGG | + | chr5.3:3244441-3244460 | None:intergenic | 50.0% | |
| GCCGAGTAAGAGCTGAAGAA+CGG | + | chr5.3:3242261-3242280 | None:intergenic | 50.0% | |
| GGTGTGGCTACCAATGTAAC+CGG | + | chr5.3:3242240-3242259 | None:intergenic | 50.0% | |
| GTAAGAGCTGAAGAACGGTG+TGG | + | chr5.3:3242256-3242275 | None:intergenic | 50.0% | |
| GTGCGACCTTAACCACAGTT+CGG | - | chr5.3:3244392-3244411 | MS.gene024691:CDS | 50.0% | |
| GTTCTTCAGCTCTTACTCGG+CGG | - | chr5.3:3242260-3242279 | MS.gene024691:CDS | 50.0% | |
| TATATTGGGGAGGATCCTCG+TGG | - | chr5.3:3244155-3244174 | MS.gene024691:intron | 50.0% | |
| TCCCTCCATCCCGTTTGTAT+TGG | - | chr5.3:3244437-3244456 | MS.gene024691:CDS | 50.0% | |
| TCCTCCCCAATATAGCCACT+AGG | + | chr5.3:3244149-3244168 | None:intergenic | 50.0% | |
| TCTGCGAATGGCAACTTCTG+AGG | + | chr5.3:3242321-3242340 | None:intergenic | 50.0% | |
| TTGGAAGTCATGGCTGCTCA+CGG | - | chr5.3:3243329-3243348 | MS.gene024691:intron | 50.0% | |
| !! | CGGCCTGCACTGACAATTTT+TGG | - | chr5.3:3244227-3244246 | MS.gene024691:intron | 50.0% |
| ACCAATGTAACCGGCACCAC+CGG | + | chr5.3:3242231-3242250 | None:intergenic | 55.0% | |
| AGCAAGTAGCGGTTGGCAGA+CGG | - | chr5.3:3244207-3244226 | MS.gene024691:intron | 55.0% | |
| CCCTAGTGGCTATATTGGGG+AGG | - | chr5.3:3244145-3244164 | MS.gene024691:intron | 55.0% | |
| CGCAGAGTTAAGGAACTCGC+CGG | - | chr5.3:3242335-3242354 | MS.gene024691:intron | 55.0% | |
| CGGTGAAGGTGACAGATGGT+AGG | + | chr5.3:3244927-3244946 | None:intergenic | 55.0% | |
| CTGTCAGCAGCGAACCCATA+TGG | - | chr5.3:3243833-3243852 | MS.gene024691:intron | 55.0% | |
| GGCCAATACAAACGGGATGG+AGG | + | chr5.3:3244442-3244461 | None:intergenic | 55.0% | |
| GGTCACTGCAGGTAGATCTC+CGG | - | chr5.3:3242980-3242999 | MS.gene024691:intron | 55.0% | |
| GTCACTGCAGGTAGATCTCC+GGG | - | chr5.3:3242981-3243000 | MS.gene024691:intron | 55.0% | |
| TATGGGTTCGCTGCTGACAG+AGG | + | chr5.3:3243833-3243852 | None:intergenic | 55.0% | |
| TTCATCGTGCTGAGCCAGAC+TGG | - | chr5.3:3244081-3244100 | MS.gene024691:intron | 55.0% | |
| CACTAGGGTGTGCACCCACT+GGG | + | chr5.3:3244133-3244152 | None:intergenic | 60.0% | |
| CTACGGCCAGCCTTCACAAG+TGG | + | chr5.3:3245068-3245087 | None:intergenic | 60.0% | |
| GCAGGTAGATCTCCGGGACA+GGG | - | chr5.3:3242987-3243006 | MS.gene024691:intron | 60.0% | |
| GGCTGCTCACGGATGCAAGA+AGG | - | chr5.3:3243340-3243359 | MS.gene024691:intron | 60.0% | |
| GTACTCGTTACCGGTGGTGC+CGG | - | chr5.3:3242218-3242237 | MS.gene024691:CDS | 60.0% | |
| TGCAGGTAGATCTCCGGGAC+AGG | - | chr5.3:3242986-3243005 | MS.gene024691:intron | 60.0% | |
| ! | GTGAAGGCTGGCCGTAGAAC+TGG | - | chr5.3:3245071-3245090 | MS.gene024691:intron | 60.0% |
| !! | ACCGGTGGTGCCGGTTACAT+TGG | - | chr5.3:3242227-3242246 | MS.gene024691:CDS | 60.0% |
| CCACTAGGGTGTGCACCCAC+TGG | + | chr5.3:3244134-3244153 | None:intergenic | 65.0% | |
| CCAGTGGGTGCACACCCTAG+TGG | - | chr5.3:3244131-3244150 | MS.gene024691:intron | 65.0% | |
| !! | GCTCTAGAGCGGCCCTGTCC+CGG | + | chr5.3:3243002-3243021 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 3242203 | 3245541 | 3242203 | ID=MS.gene024691 |
| chr5.3 | mRNA | 3242203 | 3245541 | 3242203 | ID=MS.gene024691.t1;Parent=MS.gene024691 |
| chr5.3 | exon | 3245356 | 3245541 | 3245356 | ID=MS.gene024691.t1.exon1;Parent=MS.gene024691.t1 |
| chr5.3 | CDS | 3245356 | 3245541 | 3245356 | ID=cds.MS.gene024691.t1;Parent=MS.gene024691.t1 |
| chr5.3 | exon | 3244704 | 3244753 | 3244704 | ID=MS.gene024691.t1.exon2;Parent=MS.gene024691.t1 |
| chr5.3 | CDS | 3244704 | 3244753 | 3244704 | ID=cds.MS.gene024691.t1;Parent=MS.gene024691.t1 |
| chr5.3 | exon | 3244383 | 3244518 | 3244383 | ID=MS.gene024691.t1.exon3;Parent=MS.gene024691.t1 |
| chr5.3 | CDS | 3244383 | 3244518 | 3244383 | ID=cds.MS.gene024691.t1;Parent=MS.gene024691.t1 |
| chr5.3 | exon | 3243879 | 3243980 | 3243879 | ID=MS.gene024691.t1.exon4;Parent=MS.gene024691.t1 |
| chr5.3 | CDS | 3243879 | 3243980 | 3243879 | ID=cds.MS.gene024691.t1;Parent=MS.gene024691.t1 |
| chr5.3 | exon | 3243464 | 3243691 | 3243464 | ID=MS.gene024691.t1.exon5;Parent=MS.gene024691.t1 |
| chr5.3 | CDS | 3243464 | 3243691 | 3243464 | ID=cds.MS.gene024691.t1;Parent=MS.gene024691.t1 |
| chr5.3 | exon | 3243072 | 3243150 | 3243072 | ID=MS.gene024691.t1.exon6;Parent=MS.gene024691.t1 |
| chr5.3 | CDS | 3243072 | 3243150 | 3243072 | ID=cds.MS.gene024691.t1;Parent=MS.gene024691.t1 |
| chr5.3 | exon | 3242848 | 3242930 | 3242848 | ID=MS.gene024691.t1.exon7;Parent=MS.gene024691.t1 |
| chr5.3 | CDS | 3242848 | 3242930 | 3242848 | ID=cds.MS.gene024691.t1;Parent=MS.gene024691.t1 |
| chr5.3 | exon | 3242594 | 3242685 | 3242594 | ID=MS.gene024691.t1.exon8;Parent=MS.gene024691.t1 |
| chr5.3 | CDS | 3242594 | 3242685 | 3242594 | ID=cds.MS.gene024691.t1;Parent=MS.gene024691.t1 |
| chr5.3 | exon | 3242203 | 3242296 | 3242203 | ID=MS.gene024691.t1.exon9;Parent=MS.gene024691.t1 |
| chr5.3 | CDS | 3242203 | 3242296 | 3242203 | ID=cds.MS.gene024691.t1;Parent=MS.gene024691.t1 |
| Gene Sequence |
| Protein sequence |
