Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024690.t1 | XP_003610981.1 | 97.4 | 392 | 10 | 0 | 1 | 392 | 1 | 392 | 1.10E-219 | 772.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024690.t1 | O65781 | 86.2 | 348 | 47 | 1 | 46 | 392 | 3 | 350 | 3.0e-178 | 625.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024690.t1 | G7K9B4 | 97.4 | 392 | 10 | 0 | 1 | 392 | 1 | 392 | 7.7e-220 | 772.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024690 | MS.gene06078 | PPI |
| MS.gene024690 | MS.gene30948 | PPI |
| MS.gene024690 | MS.gene00065 | PPI |
| MS.gene024690 | MS.gene22302 | PPI |
| MS.gene024690 | MS.gene45481 | PPI |
| MS.gene024690 | MS.gene22301 | PPI |
| MS.gene024690 | MS.gene058332 | PPI |
| MS.gene024690 | MS.gene33973 | PPI |
| MS.gene069594 | MS.gene024690 | PPI |
| MS.gene22301 | MS.gene024690 | PPI |
| MS.gene024690 | MS.gene55903 | PPI |
| MS.gene048934 | MS.gene024690 | PPI |
| MS.gene024690 | MS.gene60814 | PPI |
| MS.gene024690 | MS.gene61100 | PPI |
| MS.gene024690 | MS.gene030443 | PPI |
| MS.gene024690 | MS.gene41197 | PPI |
| MS.gene024690 | MS.gene006028 | PPI |
| MS.gene024690 | MS.gene21670 | PPI |
| MS.gene024690 | MS.gene67882 | PPI |
| MS.gene024690 | MS.gene72188 | PPI |
| MS.gene024690 | MS.gene041727 | PPI |
| MS.gene024690 | MS.gene55805 | PPI |
| MS.gene024690 | MS.gene31166 | PPI |
| MS.gene024690 | MS.gene069594 | PPI |
| MS.gene024690 | MS.gene21669 | PPI |
| MS.gene024690 | MS.gene021092 | PPI |
| MS.gene024690 | MS.gene000931 | PPI |
| MS.gene024690 | MS.gene052130 | PPI |
| MS.gene024690 | MS.gene024691 | PPI |
| MS.gene21669 | MS.gene024690 | PPI |
| MS.gene024690 | MS.gene048934 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024690.t1 | MTR_5g009170 | 97.449 | 392 | 10 | 0 | 1 | 392 | 1 | 392 | 0.0 | 796 |
| MS.gene024690.t1 | MTR_5g009160 | 92.219 | 347 | 27 | 0 | 46 | 392 | 3 | 349 | 0.0 | 681 |
| MS.gene024690.t1 | MTR_8g099535 | 83.140 | 344 | 58 | 0 | 46 | 389 | 3 | 346 | 0.0 | 616 |
| MS.gene024690.t1 | MTR_5g009160 | 91.636 | 275 | 23 | 0 | 118 | 392 | 12 | 286 | 0.0 | 541 |
| MS.gene024690.t1 | MTR_4g134490 | 66.279 | 344 | 114 | 2 | 44 | 385 | 22 | 365 | 2.81e-173 | 488 |
| MS.gene024690.t1 | MTR_8g096880 | 66.286 | 350 | 115 | 3 | 42 | 388 | 1 | 350 | 4.15e-173 | 487 |
| MS.gene024690.t1 | MTR_4g134490 | 65.143 | 350 | 114 | 3 | 44 | 385 | 22 | 371 | 2.00e-170 | 481 |
| MS.gene024690.t1 | MTR_8g096880 | 65.635 | 323 | 109 | 2 | 42 | 362 | 1 | 323 | 3.32e-155 | 440 |
| MS.gene024690.t1 | MTR_5g009160 | 90.278 | 216 | 21 | 0 | 118 | 333 | 12 | 227 | 3.41e-147 | 416 |
| MS.gene024690.t1 | MTR_8g096880 | 65.306 | 294 | 100 | 2 | 42 | 333 | 1 | 294 | 6.80e-140 | 401 |
| MS.gene024690.t1 | MTR_8g089180 | 42.614 | 352 | 180 | 6 | 49 | 389 | 73 | 413 | 4.27e-85 | 265 |
| MS.gene024690.t1 | MTR_8g089180 | 42.614 | 352 | 180 | 6 | 49 | 389 | 73 | 413 | 4.27e-85 | 265 |
| MS.gene024690.t1 | MTR_2g032100 | 42.486 | 346 | 185 | 6 | 49 | 387 | 73 | 411 | 2.53e-83 | 260 |
| MS.gene024690.t1 | MTR_2g032100 | 43.005 | 193 | 108 | 2 | 49 | 241 | 73 | 263 | 4.99e-45 | 157 |
| MS.gene024690.t1 | MTR_8g099285 | 85.185 | 54 | 8 | 0 | 278 | 331 | 3 | 56 | 3.19e-25 | 97.4 |
| MS.gene024690.t1 | MTR_1g009600 | 28.732 | 355 | 212 | 14 | 43 | 386 | 1 | 325 | 8.70e-23 | 100 |
| MS.gene024690.t1 | MTR_0034s0060 | 27.642 | 369 | 224 | 15 | 29 | 386 | 121 | 457 | 6.04e-22 | 98.6 |
| MS.gene024690.t1 | MTR_4g102270 | 27.701 | 361 | 217 | 13 | 35 | 377 | 85 | 419 | 1.35e-21 | 96.3 |
| MS.gene024690.t1 | MTR_0354s0040 | 26.263 | 396 | 240 | 14 | 14 | 379 | 41 | 414 | 8.82e-21 | 94.0 |
| MS.gene024690.t1 | MTR_4g129820 | 27.119 | 354 | 223 | 13 | 48 | 386 | 96 | 429 | 2.40e-20 | 92.4 |
| MS.gene024690.t1 | MTR_4g024600 | 26.316 | 361 | 229 | 12 | 38 | 379 | 91 | 433 | 5.43e-20 | 91.7 |
| MS.gene024690.t1 | MTR_2g073240 | 26.781 | 351 | 216 | 14 | 47 | 386 | 19 | 339 | 8.91e-20 | 91.7 |
| MS.gene024690.t1 | MTR_3g084090 | 26.377 | 345 | 220 | 12 | 48 | 377 | 100 | 425 | 2.89e-18 | 86.7 |
| MS.gene024690.t1 | MTR_5g011940 | 25.000 | 348 | 221 | 12 | 48 | 377 | 91 | 416 | 5.52e-18 | 85.5 |
| MS.gene024690.t1 | MTR_4g120030 | 25.749 | 334 | 196 | 16 | 45 | 369 | 109 | 399 | 4.89e-13 | 70.5 |
| MS.gene024690.t1 | MTR_4g063600 | 25.469 | 373 | 215 | 14 | 8 | 369 | 6 | 326 | 1.62e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024690.t1 | AT4G10960 | 81.792 | 346 | 61 | 1 | 42 | 387 | 1 | 344 | 0.0 | 600 |
| MS.gene024690.t1 | AT1G64440 | 77.907 | 344 | 75 | 1 | 49 | 391 | 5 | 348 | 0.0 | 581 |
| MS.gene024690.t1 | AT4G23920 | 80.060 | 336 | 67 | 0 | 47 | 382 | 3 | 338 | 0.0 | 579 |
| MS.gene024690.t1 | AT1G63180 | 66.862 | 341 | 111 | 2 | 47 | 385 | 7 | 347 | 6.06e-173 | 486 |
| MS.gene024690.t1 | AT1G12780 | 65.689 | 341 | 115 | 2 | 47 | 385 | 7 | 347 | 5.76e-170 | 479 |
| MS.gene024690.t1 | AT1G63180 | 64.746 | 295 | 101 | 3 | 47 | 338 | 7 | 301 | 1.80e-139 | 400 |
| MS.gene024690.t1 | AT1G30620 | 41.711 | 374 | 200 | 7 | 29 | 391 | 49 | 415 | 1.58e-86 | 269 |
| MS.gene024690.t1 | AT1G30620 | 41.711 | 374 | 200 | 7 | 29 | 391 | 49 | 415 | 1.58e-86 | 269 |
| MS.gene024690.t1 | AT1G30620 | 41.711 | 374 | 200 | 7 | 29 | 391 | 49 | 415 | 1.58e-86 | 269 |
| MS.gene024690.t1 | AT1G30620 | 41.711 | 374 | 200 | 7 | 29 | 391 | 49 | 415 | 1.58e-86 | 269 |
| MS.gene024690.t1 | AT1G30620 | 43.714 | 350 | 183 | 6 | 49 | 391 | 72 | 414 | 3.19e-86 | 268 |
| MS.gene024690.t1 | AT5G44480 | 41.429 | 350 | 183 | 6 | 49 | 387 | 73 | 411 | 3.14e-83 | 260 |
| MS.gene024690.t1 | AT5G44480 | 41.429 | 350 | 183 | 6 | 49 | 387 | 73 | 411 | 3.14e-83 | 260 |
| MS.gene024690.t1 | AT5G44480 | 41.429 | 350 | 183 | 6 | 49 | 387 | 73 | 411 | 3.14e-83 | 260 |
| MS.gene024690.t1 | AT5G44480 | 41.429 | 350 | 183 | 6 | 49 | 387 | 97 | 435 | 7.80e-83 | 260 |
| MS.gene024690.t1 | AT4G20460 | 42.775 | 346 | 184 | 6 | 49 | 387 | 72 | 410 | 1.82e-82 | 258 |
| MS.gene024690.t1 | AT1G30620 | 43.779 | 217 | 116 | 3 | 29 | 241 | 49 | 263 | 3.02e-52 | 176 |
| MS.gene024690.t1 | AT2G34850 | 41.702 | 235 | 124 | 5 | 160 | 387 | 1 | 229 | 2.11e-51 | 172 |
| MS.gene024690.t1 | AT2G34850 | 41.702 | 235 | 124 | 5 | 160 | 387 | 1 | 229 | 2.11e-51 | 172 |
| MS.gene024690.t1 | AT2G34850 | 41.702 | 235 | 124 | 5 | 160 | 387 | 1 | 229 | 2.11e-51 | 172 |
| MS.gene024690.t1 | AT2G34850 | 41.702 | 235 | 124 | 5 | 160 | 387 | 1 | 229 | 2.11e-51 | 172 |
| MS.gene024690.t1 | AT1G53500 | 27.066 | 351 | 215 | 14 | 47 | 386 | 9 | 329 | 4.39e-23 | 101 |
| MS.gene024690.t1 | AT4G00110 | 28.116 | 345 | 205 | 13 | 38 | 362 | 81 | 402 | 2.29e-22 | 98.6 |
| MS.gene024690.t1 | AT1G02000 | 27.536 | 345 | 207 | 13 | 38 | 362 | 82 | 403 | 1.75e-21 | 95.9 |
| MS.gene024690.t1 | AT2G45310 | 26.648 | 349 | 214 | 12 | 48 | 377 | 98 | 423 | 1.98e-21 | 95.9 |
| MS.gene024690.t1 | AT3G14790 | 26.781 | 351 | 216 | 13 | 47 | 386 | 10 | 330 | 2.00e-20 | 94.0 |
| MS.gene024690.t1 | AT3G14790 | 26.781 | 351 | 216 | 13 | 47 | 386 | 7 | 327 | 2.06e-20 | 93.6 |
| MS.gene024690.t1 | AT1G78570 | 26.781 | 351 | 216 | 14 | 47 | 386 | 7 | 327 | 2.45e-20 | 93.6 |
| MS.gene024690.t1 | AT3G23820 | 26.957 | 345 | 218 | 11 | 48 | 377 | 113 | 438 | 5.89e-19 | 88.6 |
| MS.gene024690.t1 | AT4G12250 | 26.513 | 347 | 217 | 11 | 48 | 377 | 97 | 422 | 7.30e-18 | 85.5 |
| MS.gene024690.t1 | AT2G47650 | 26.720 | 378 | 220 | 18 | 12 | 373 | 86 | 422 | 4.76e-16 | 79.7 |
| MS.gene024690.t1 | AT2G47650 | 27.297 | 381 | 220 | 19 | 12 | 373 | 86 | 428 | 5.78e-16 | 79.7 |
| MS.gene024690.t1 | AT4G30440 | 26.184 | 359 | 222 | 14 | 48 | 387 | 89 | 423 | 7.04e-16 | 79.3 |
| MS.gene024690.t1 | AT3G53520 | 23.747 | 379 | 240 | 15 | 3 | 369 | 70 | 411 | 9.58e-13 | 69.7 |
| MS.gene024690.t1 | AT2G28760 | 25.893 | 336 | 211 | 13 | 39 | 369 | 23 | 325 | 1.94e-11 | 65.1 |
| MS.gene024690.t1 | AT2G28760 | 25.893 | 336 | 211 | 13 | 39 | 369 | 23 | 325 | 1.94e-11 | 65.1 |
| MS.gene024690.t1 | AT2G28760 | 25.893 | 336 | 211 | 13 | 39 | 369 | 23 | 325 | 1.94e-11 | 65.1 |
| MS.gene024690.t1 | AT2G28760 | 25.824 | 364 | 229 | 14 | 14 | 369 | 26 | 356 | 2.47e-11 | 65.1 |
Find 93 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAACTCGCTGCTGAATT+TGG | 0.168833 | 5.3:-3249875 | MS.gene024690:CDS |
| ATAAATGGCATAAGATTATT+TGG | 0.181549 | 5.3:+3248077 | None:intergenic |
| ACCGCTACTTGCTGAATAAA+TGG | 0.272562 | 5.3:+3248062 | None:intergenic |
| AATTAGAATTACTACCGTTT+TGG | 0.279718 | 5.3:+3250053 | None:intergenic |
| CATACCTTGGTTCGTCCATA+TGG | 0.299595 | 5.3:+3248489 | None:intergenic |
| GATTGGGACAATCACTCTTT+TGG | 0.302714 | 5.3:-3248723 | MS.gene024690:CDS |
| CACACCCTAGTGGTTATATT+GGG | 0.312315 | 5.3:-3248118 | MS.gene024690:CDS |
| GCACACCCTAGTGGTTATAT+TGG | 0.324849 | 5.3:-3248119 | MS.gene024690:CDS |
| TCATCTTCAGCCACTGTATA+TGG | 0.330380 | 5.3:-3248564 | MS.gene024690:CDS |
| CCACTTTAATCTGTGGAATC+AGG | 0.342821 | 5.3:+3246619 | None:intergenic |
| TACTACAACAACAACTTGAT+TGG | 0.354486 | 5.3:-3248740 | MS.gene024690:CDS |
| TGATGTGGCAGGGCAAAATA+TGG | 0.355594 | 5.3:-3246706 | MS.gene024690:intron |
| TGGAATGAAGAATTCTTAGA+AGG | 0.355786 | 5.3:+3250079 | None:intergenic |
| AGGAAAGGGAACATCAGTTT+TGG | 0.357526 | 5.3:-3247513 | MS.gene024690:CDS |
| AGGAACTCGCTGCTGAATTT+GGG | 0.373544 | 5.3:-3249874 | MS.gene024690:CDS |
| GTTTATGCAATGCAGCAATA+TGG | 0.405003 | 5.3:+3247729 | None:intergenic |
| AACAAAACCGTTCTAGTTAC+CGG | 0.411332 | 5.3:-3250010 | MS.gene024690:CDS |
| AATGATTATAATACAGTTGA+TGG | 0.415727 | 5.3:-3248008 | MS.gene024690:CDS |
| TGTGCCGTGATCAATGGAAT+TGG | 0.420702 | 5.3:-3246672 | MS.gene024690:CDS |
| TCTCGCGTCGGCATCACTAA+TGG | 0.429875 | 5.3:-3250139 | MS.gene024690:CDS |
| TCAGTACATGGAACCTCCTT+CGG | 0.438588 | 5.3:+3248537 | None:intergenic |
| GGCTGTGACGTTTATAACTT+AGG | 0.439614 | 5.3:-3247539 | MS.gene024690:CDS |
| TTGGAAGTCATGGCTGCTCA+TGG | 0.451385 | 5.3:-3248704 | MS.gene024690:CDS |
| GGCCACTGCAGGTAGACATC+CGG | 0.451531 | 5.3:-3249177 | MS.gene024690:intron |
| GTGAAGGCTGGCCGTAGGCC+TGG | 0.454952 | 5.3:-3246980 | MS.gene024690:CDS |
| AGTTGCTGTTCATAGAGTTA+AGG | 0.458867 | 5.3:-3249894 | MS.gene024690:CDS |
| CTTTCAGCAGCAAACCCATA+TGG | 0.460790 | 5.3:-3248504 | MS.gene024690:CDS |
| ACTACAACAACAACTTGATT+GGG | 0.462398 | 5.3:-3248739 | MS.gene024690:CDS |
| CCACTAGGGTGTGCACCCAC+TGG | 0.468983 | 5.3:+3248128 | None:intergenic |
| TGCAGGTAGACATCCGGGAC+AGG | 0.471148 | 5.3:-3249171 | MS.gene024690:intron |
| CACTAGGGTGTGCACCCACT+GGG | 0.471612 | 5.3:+3248129 | None:intergenic |
| TATAATACAGTTGATGGCAC+TGG | 0.475559 | 5.3:-3248002 | MS.gene024690:CDS |
| ATGAAATGTGCCGTGATCAA+TGG | 0.481865 | 5.3:-3246678 | MS.gene024690:CDS |
| GCTCAAGTGCAGCCCTGTCC+CGG | 0.493218 | 5.3:+3249158 | None:intergenic |
| TCAATCGTGCTGATCCAGAT+TGG | 0.502291 | 5.3:-3248178 | MS.gene024690:CDS |
| AAGCTGAAAGAGAACTTAAG+TGG | 0.503547 | 5.3:-3246925 | MS.gene024690:CDS |
| TTTACTCGGCGGTTTCAAAA+CGG | 0.504395 | 5.3:-3249948 | MS.gene024690:CDS |
| GACGTTTATAACTTAGGGAC+AGG | 0.505250 | 5.3:-3247533 | MS.gene024690:CDS |
| TCAGAAAATTCCACTTGTGA+AGG | 0.507254 | 5.3:-3246996 | MS.gene024690:intron |
| ATACCTTGGTTCGTCCATAT+GGG | 0.507726 | 5.3:+3248490 | None:intergenic |
| TATAACTTAGGGACAGGAAA+GGG | 0.507998 | 5.3:-3247527 | MS.gene024690:CDS |
| TCTTCATTCCAAACCCAAAA+CGG | 0.510188 | 5.3:-3250067 | MS.gene024690:CDS |
| ATAATACAGTTGATGGCACT+GGG | 0.520770 | 5.3:-3248001 | MS.gene024690:CDS |
| CATGTTGTTGATTTAGCTGA+TGG | 0.521889 | 5.3:-3247752 | MS.gene024690:CDS |
| GCTTCAATGGCTTCTCGCGT+CGG | 0.522264 | 5.3:-3250151 | None:intergenic |
| TATGGGTTTGCTGCTGAAAG+AGG | 0.522622 | 5.3:+3248507 | None:intergenic |
| AAAATTCCACTTGTGAAGGC+TGG | 0.523612 | 5.3:-3246992 | MS.gene024690:CDS |
| AGAGCACCTTGTGAAAATTG+AGG | 0.524145 | 5.3:+3249846 | None:intergenic |
| GGTGTGGCTACCGATGTAAC+CGG | 0.525888 | 5.3:+3249982 | None:intergenic |
| GCTGTGACGTTTATAACTTA+GGG | 0.529207 | 5.3:-3247538 | MS.gene024690:CDS |
| TCATTGTCCACTTTAATCTG+TGG | 0.538500 | 5.3:+3246612 | None:intergenic |
| ACCGATGTAACCGGCACCGC+CGG | 0.541899 | 5.3:+3249991 | None:intergenic |
| GTGCCGTGATCAATGGAATT+GGG | 0.542969 | 5.3:-3246671 | MS.gene024690:CDS |
| CAGGAGATCCATAGCCGTAA+GGG | 0.545140 | 5.3:+3246638 | None:intergenic |
| AGAGGAAACTCTTCAGTACA+TGG | 0.546798 | 5.3:+3248525 | None:intergenic |
| GTTCTAGTTACCGGCGGTGC+CGG | 0.549409 | 5.3:-3250001 | MS.gene024690:CDS |
| GCCACTGCAGGTAGACATCC+GGG | 0.559878 | 5.3:-3249176 | MS.gene024690:intron |
| TTGTTGTTGTAGTAGAGTAA+CGG | 0.566441 | 5.3:+3248749 | None:intergenic |
| TCAGGAGATCCATAGCCGTA+AGG | 0.570852 | 5.3:+3246637 | None:intergenic |
| TTTATTCAGCAAGTAGCGGT+TGG | 0.573220 | 5.3:-3248059 | MS.gene024690:CDS |
| TGAAGAGTTTAAATAAGAAG+AGG | 0.577484 | 5.3:+3250114 | None:intergenic |
| CTTCAGCCACTGTATATGGT+TGG | 0.578060 | 5.3:-3248560 | MS.gene024690:CDS |
| TATATTGGGGAGGATCCTCA+CGG | 0.584038 | 5.3:-3248104 | MS.gene024690:CDS |
| GCCATTTATTCAGCAAGTAG+CGG | 0.584484 | 5.3:-3248063 | MS.gene024690:CDS |
| GGCTGCTCATGGATGCAAGA+AGG | 0.588720 | 5.3:-3248693 | MS.gene024690:intron |
| AAACTAGAAGAAGCTGACAT+AGG | 0.589751 | 5.3:-3247710 | MS.gene024690:intron |
| TGTATATGGTTGGCCGAAGG+AGG | 0.591711 | 5.3:-3248550 | MS.gene024690:CDS |
| CACTGTATATGGTTGGCCGA+AGG | 0.593964 | 5.3:-3248553 | MS.gene024690:CDS |
| CACTTGTGAAGGCTGGCCGT+AGG | 0.596509 | 5.3:-3246985 | MS.gene024690:CDS |
| ATATTGGGGAGGATCCTCAC+GGG | 0.599402 | 5.3:-3248103 | MS.gene024690:CDS |
| TTATAACTTAGGGACAGGAA+AGG | 0.600592 | 5.3:-3247528 | MS.gene024690:CDS |
| TTTCAGCATCACCAGGCCTA+CGG | 0.603678 | 5.3:+3246969 | None:intergenic |
| TCCTCCCCAATATAACCACT+AGG | 0.607338 | 5.3:+3248113 | None:intergenic |
| TAAACAATTTCAGCATCACC+AGG | 0.611844 | 5.3:+3246962 | None:intergenic |
| TTGAGATACTTCAACCCAGT+GGG | 0.612544 | 5.3:-3248143 | MS.gene024690:CDS |
| TAGCCCAATTCCATTGATCA+CGG | 0.615843 | 5.3:+3246668 | None:intergenic |
| CCCTAGTGGTTATATTGGGG+AGG | 0.615928 | 5.3:-3248114 | MS.gene024690:CDS |
| ACCGGCGGTGCCGGTTACAT+CGG | 0.627367 | 5.3:-3249992 | MS.gene024690:CDS |
| CTACGGCCAGCCTTCACAAG+TGG | 0.628252 | 5.3:+3246986 | None:intergenic |
| GCAGGTAGACATCCGGGACA+GGG | 0.638284 | 5.3:-3249170 | MS.gene024690:intron |
| CCTCCCCAATATAACCACTA+GGG | 0.650185 | 5.3:+3248114 | None:intergenic |
| GCCGAGTAAAAGCTGAAGAA+CGG | 0.652299 | 5.3:+3249961 | None:intergenic |
| GGCACCGCCGGTAACTAGAA+CGG | 0.658798 | 5.3:+3250003 | None:intergenic |
| ACACCCTAGTGGTTATATTG+GGG | 0.659441 | 5.3:-3248117 | MS.gene024690:CDS |
| TTTGCTGGAATGAAAGCAGT+GGG | 0.661073 | 5.3:-3248788 | MS.gene024690:CDS |
| CCAGTGGGTGCACACCCTAG+TGG | 0.666271 | 5.3:-3248128 | MS.gene024690:CDS |
| AAACCCATATGGACGAACCA+AGG | 0.674131 | 5.3:-3248493 | MS.gene024690:intron |
| AGATTATTTGGAATCCCGTG+AGG | 0.688575 | 5.3:+3248089 | None:intergenic |
| CTTCGGCCAACCATATACAG+TGG | 0.701226 | 5.3:+3248554 | None:intergenic |
| ATTGAGATACTTCAACCCAG+TGG | 0.701880 | 5.3:-3248144 | MS.gene024690:CDS |
| GTAAAAGCTGAAGAACGGTG+TGG | 0.738273 | 5.3:+3249966 | None:intergenic |
| TAATACAGTTGATGGCACTG+GGG | 0.771630 | 5.3:-3248000 | MS.gene024690:intron |
| AAAACCGTTCTAGTTACCGG+CGG | 0.775437 | 5.3:-3250007 | MS.gene024690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAGAATAATAAAATATAAA+GGG | + | chr5.3:3250030-3250049 | None:intergenic | 10.0% |
| !! | CTTTAATAATAATGAAAAAT+TGG | - | chr5.3:3247853-3247872 | MS.gene024690:intron | 10.0% |
| !! | TAGAGAATAATAAAATATAA+AGG | + | chr5.3:3250031-3250050 | None:intergenic | 10.0% |
| !! | CTAAAAAAAATTATTTGATG+TGG | - | chr5.3:3250048-3250067 | MS.gene024690:CDS | 15.0% |
| !! | CTACAATAAAAGAATAAAAA+AGG | + | chr5.3:3247942-3247961 | None:intergenic | 15.0% |
| !! | GAGAATAATAAAATATAAAG+GGG | + | chr5.3:3250029-3250048 | None:intergenic | 15.0% |
| !!! | ATTGATAATTTTCTGAATTT+AGG | - | chr5.3:3246997-3247016 | MS.gene024690:intron | 15.0% |
| !!! | CTTTTTTATTCTTTTATTGT+AGG | - | chr5.3:3247940-3247959 | MS.gene024690:intron | 15.0% |
| !! | AATGATTATAATACAGTTGA+TGG | - | chr5.3:3248761-3248780 | MS.gene024690:CDS | 20.0% |
| !! | AATTGCAAAAATTCTTATCA+AGG | + | chr5.3:3247121-3247140 | None:intergenic | 20.0% |
| !! | AGGTAAGATAATGATATATT+TGG | + | chr5.3:3249092-3249111 | None:intergenic | 20.0% |
| !! | ATAAATGGCATAAGATTATT+TGG | + | chr5.3:3248695-3248714 | None:intergenic | 20.0% |
| !! | ATAATAAAATATAAAGGGGT+AGG | + | chr5.3:3250025-3250044 | None:intergenic | 20.0% |
| !! | GATAATTAGAAAGAATTTGA+AGG | + | chr5.3:3248420-3248439 | None:intergenic | 20.0% |
| !! | GCATGAATATTAAATACATA+AGG | + | chr5.3:3249194-3249213 | None:intergenic | 20.0% |
| !! | TACTGAGAATCAAAATAAAA+AGG | + | chr5.3:3247690-3247709 | None:intergenic | 20.0% |
| !! | TATGATAAGGAAATTGTTTA+GGG | - | chr5.3:3248299-3248318 | MS.gene024690:intron | 20.0% |
| !! | TATTTGATTCCTATAACATT+TGG | + | chr5.3:3249595-3249614 | None:intergenic | 20.0% |
| !! | TCATCTTTATGATATATTCT+GGG | - | chr5.3:3249973-3249992 | MS.gene024690:CDS | 20.0% |
| !! | TGAAGTAGATGAATAATTTA+AGG | - | chr5.3:3248388-3248407 | MS.gene024690:intron | 20.0% |
| !! | TTCATCTTTATGATATATTC+TGG | - | chr5.3:3249972-3249991 | MS.gene024690:CDS | 20.0% |
| !!! | AATAACATTATTTTCCAATC+TGG | + | chr5.3:3248608-3248627 | None:intergenic | 20.0% |
| !!! | AGTATTTTTGTTTTGAAAAG+TGG | + | chr5.3:3249375-3249394 | None:intergenic | 20.0% |
| !!! | ATAATTTAACTCTTGTTTAG+AGG | - | chr5.3:3247298-3247317 | MS.gene024690:intron | 20.0% |
| !!! | ATTCAAGCAAAAATTTTAAC+AGG | + | chr5.3:3248871-3248890 | None:intergenic | 20.0% |
| !!! | ATTGGAAAAAGAAAATTTTG+AGG | - | chr5.3:3249160-3249179 | MS.gene024690:CDS | 20.0% |
| !!! | TAATTTAACTCTTGTTTAGA+GGG | - | chr5.3:3247299-3247318 | MS.gene024690:intron | 20.0% |
| !!! | TGCAATTTGATGTAATTTTT+GGG | - | chr5.3:3247134-3247153 | MS.gene024690:intron | 20.0% |
| !!! | TTCAAGCAAAAATTTTAACA+GGG | + | chr5.3:3248870-3248889 | None:intergenic | 20.0% |
| !!! | TTGCAATTTGATGTAATTTT+TGG | - | chr5.3:3247133-3247152 | MS.gene024690:intron | 20.0% |
| !!! | TTTGACTTTTCATGATAATT+CGG | - | chr5.3:3247235-3247254 | MS.gene024690:intron | 20.0% |
| ! | AAAAAATTATTTGATGTGGC+AGG | - | chr5.3:3250052-3250071 | MS.gene024690:CDS | 25.0% |
| ! | AAAAATTATTTGATGTGGCA+GGG | - | chr5.3:3250053-3250072 | MS.gene024690:CDS | 25.0% |
| ! | AAAGCCAGAAGTAAAATTAA+GGG | + | chr5.3:3247505-3247524 | None:intergenic | 25.0% |
| ! | AGTAGATGAATAATTTAAGG+AGG | - | chr5.3:3248391-3248410 | MS.gene024690:intron | 25.0% |
| ! | ATATACATATATAACGCTGA+AGG | + | chr5.3:3246967-3246986 | None:intergenic | 25.0% |
| ! | CAAAGACATTAGATAAGTTT+GGG | - | chr5.3:3247762-3247781 | MS.gene024690:CDS | 25.0% |
| ! | GGAAAGGTAATAACTTTATT+TGG | - | chr5.3:3249308-3249327 | MS.gene024690:intron | 25.0% |
| ! | GTATGATAAGGAAATTGTTT+AGG | - | chr5.3:3248298-3248317 | MS.gene024690:intron | 25.0% |
| ! | TAATCTTTAATCGACAATCA+CGG | - | chr5.3:3249646-3249665 | MS.gene024690:intron | 25.0% |
| ! | TACACGTGAAATAATCAAAA+CGG | + | chr5.3:3248822-3248841 | None:intergenic | 25.0% |
| ! | TATTCGAACACAAAATATCT+TGG | + | chr5.3:3249450-3249469 | None:intergenic | 25.0% |
| ! | TGAAGAGTTTAAATAAGAAG+AGG | + | chr5.3:3246658-3246677 | None:intergenic | 25.0% |
| ! | TTCAAAACCCCAAAAATATA+TGG | + | chr5.3:3248355-3248374 | None:intergenic | 25.0% |
| ! | TTCCTTTCTAATATCTTGTA+AGG | - | chr5.3:3249899-3249918 | MS.gene024690:CDS | 25.0% |
| ! | TTGATATAATCCTTACTTTG+TGG | + | chr5.3:3247649-3247668 | None:intergenic | 25.0% |
| !! | AATTAGAATTACTACCGTTT+TGG | + | chr5.3:3246719-3246738 | None:intergenic | 25.0% |
| !! | AATTTAACTCTTGTTTAGAG+GGG | - | chr5.3:3247300-3247319 | MS.gene024690:intron | 25.0% |
| !! | ATTAGAATTACTACCGTTTT+GGG | + | chr5.3:3246718-3246737 | None:intergenic | 25.0% |
| !! | GAATCAAATAATTTTCCTCT+AGG | - | chr5.3:3249605-3249624 | MS.gene024690:intron | 25.0% |
| !! | GATTTGTGTAATTTTTGTGA+TGG | - | chr5.3:3247055-3247074 | MS.gene024690:intron | 25.0% |
| !! | GCAATTTGATGTAATTTTTG+GGG | - | chr5.3:3247135-3247154 | MS.gene024690:intron | 25.0% |
| !! | TGTCGATTAAAGATTAAGTT+TGG | + | chr5.3:3249642-3249661 | None:intergenic | 25.0% |
| !!! | AAATTTTAACAGGGTACAAA+TGG | + | chr5.3:3248861-3248880 | None:intergenic | 25.0% |
| !!! | AATTTTAACAGGGTACAAAT+GGG | + | chr5.3:3248860-3248879 | None:intergenic | 25.0% |
| !!! | AGACAGTTCTGATTATATTT+TGG | - | chr5.3:3247571-3247590 | MS.gene024690:intron | 25.0% |
| !!! | CACATGCTTTTATTTCTTTA+CGG | - | chr5.3:3249401-3249420 | MS.gene024690:intron | 25.0% |
| !!! | TGGTTTTTTTCATAGGATTT+TGG | + | chr5.3:3247469-3247488 | None:intergenic | 25.0% |
| !!! | TTTTTTCATAGGATTTTGGA+GGG | + | chr5.3:3247465-3247484 | None:intergenic | 25.0% |
| !!! | TTTTTTTCATAGGATTTTGG+AGG | + | chr5.3:3247466-3247485 | None:intergenic | 25.0% |
| AACTTATCTAATGTCTTTGC+AGG | + | chr5.3:3247761-3247780 | None:intergenic | 30.0% | |
| ACAATTTCCTTATCATACCT+TGG | + | chr5.3:3248296-3248315 | None:intergenic | 30.0% | |
| ACTACAACAACAACTTGATT+GGG | - | chr5.3:3248030-3248049 | MS.gene024690:CDS | 30.0% | |
| AGAATCTCACACATTAAATG+TGG | + | chr5.3:3247817-3247836 | None:intergenic | 30.0% | |
| ATAGCACTCCATAAAGAAAA+GGG | + | chr5.3:3249548-3249567 | None:intergenic | 30.0% | |
| GAAAGCCAGAAGTAAAATTA+AGG | + | chr5.3:3247506-3247525 | None:intergenic | 30.0% | |
| GAAAGCTCAAAAGCAATATT+TGG | + | chr5.3:3247189-3247208 | None:intergenic | 30.0% | |
| GCAAAGACATTAGATAAGTT+TGG | - | chr5.3:3247761-3247780 | MS.gene024690:CDS | 30.0% | |
| GCTCAATGTTATACATGATT+TGG | + | chr5.3:3249711-3249730 | None:intergenic | 30.0% | |
| GTCCTTACAAGATATTAGAA+AGG | + | chr5.3:3249904-3249923 | None:intergenic | 30.0% | |
| TACTACAACAACAACTTGAT+TGG | - | chr5.3:3248029-3248048 | MS.gene024690:CDS | 30.0% | |
| TATAGCACTCCATAAAGAAA+AGG | + | chr5.3:3249549-3249568 | None:intergenic | 30.0% | |
| TATTCCTTATCTAACTGATC+AGG | - | chr5.3:3249874-3249893 | MS.gene024690:CDS | 30.0% | |
| TCTAATATCTTGTAAGGACT+GGG | - | chr5.3:3249905-3249924 | MS.gene024690:CDS | 30.0% | |
| TGGAATGAAGAATTCTTAGA+AGG | + | chr5.3:3246693-3246712 | None:intergenic | 30.0% | |
| TTCTAATATCTTGTAAGGAC+TGG | - | chr5.3:3249904-3249923 | MS.gene024690:CDS | 30.0% | |
| TTTATGATATATTCTGGGTG+TGG | - | chr5.3:3249978-3249997 | MS.gene024690:CDS | 30.0% | |
| ! | ATTTTTGCTTCCACAAAGTA+AGG | - | chr5.3:3247636-3247655 | MS.gene024690:intron | 30.0% |
| ! | GAATAACCTCAATTTTCACA+AGG | - | chr5.3:3246917-3246936 | MS.gene024690:intron | 30.0% |
| ! | TACCTTTGATTTCTTCACTA+TGG | - | chr5.3:3248947-3248966 | MS.gene024690:intron | 30.0% |
| ! | TGTCTCTGCCATATATTTTT+GGG | - | chr5.3:3248344-3248363 | MS.gene024690:intron | 30.0% |
| ! | TTGTGTAATTTTTGTGATGG+CGG | - | chr5.3:3247058-3247077 | MS.gene024690:intron | 30.0% |
| ! | TTGTTGTTGTAGTAGAGTAA+CGG | + | chr5.3:3248023-3248042 | None:intergenic | 30.0% |
| !! | ACACTTACTCGTTTTGTTAT+TGG | - | chr5.3:3249142-3249161 | MS.gene024690:CDS | 30.0% |
| !!! | AAAAGAAAATTTTGAGGCAG+TGG | - | chr5.3:3249166-3249185 | MS.gene024690:CDS | 30.0% |
| !!! | TTCTCTTTCAGCTTTTTTTG+TGG | + | chr5.3:3249838-3249857 | None:intergenic | 30.0% |
| AAACTAGAAGAAGCTGACAT+AGG | - | chr5.3:3249059-3249078 | MS.gene024690:intron | 35.0% | |
| AAAGCCTGATCAGTTAGATA+AGG | + | chr5.3:3249881-3249900 | None:intergenic | 35.0% | |
| AACTGAGATTATAGAGCAAC+CGG | + | chr5.3:3249521-3249540 | None:intergenic | 35.0% | |
| AAGCTGAAAGAGAACTTAAG+TGG | - | chr5.3:3249844-3249863 | MS.gene024690:intron | 35.0% | |
| AAGTGGCTACCAAATGTTAT+AGG | - | chr5.3:3249583-3249602 | MS.gene024690:intron | 35.0% | |
| ACATTAAATGTGGAGAAGTG+TGG | + | chr5.3:3247807-3247826 | None:intergenic | 35.0% | |
| AGCCATAGTGAAGAAATCAA+AGG | + | chr5.3:3248952-3248971 | None:intergenic | 35.0% | |
| ATAGATAGAGACATGCAAAG+TGG | - | chr5.3:3249566-3249585 | MS.gene024690:intron | 35.0% | |
| ATGGTTCTTACCTTATTCTC+AGG | - | chr5.3:3248980-3248999 | MS.gene024690:intron | 35.0% | |
| CTGAAGGTAAAAAATCGCAA+CGG | + | chr5.3:3246951-3246970 | None:intergenic | 35.0% | |
| GCTGTGACGTTTATAACTTA+GGG | - | chr5.3:3249231-3249250 | MS.gene024690:intron | 35.0% | |
| GTTTATGCAATGCAGCAATA+TGG | + | chr5.3:3249043-3249062 | None:intergenic | 35.0% | |
| TAAACAATTTCAGCATCACC+AGG | + | chr5.3:3249810-3249829 | None:intergenic | 35.0% | |
| TATAACTTAGGGACAGGAAA+GGG | - | chr5.3:3249242-3249261 | MS.gene024690:intron | 35.0% | |
| TCAGAAAATTCCACTTGTGA+AGG | - | chr5.3:3249773-3249792 | MS.gene024690:intron | 35.0% | |
| TCTTACCTTATTCTCAGGTT+CGG | - | chr5.3:3248985-3249004 | MS.gene024690:intron | 35.0% | |
| TCTTCATTCCAAACCCAAAA+CGG | - | chr5.3:3246702-3246721 | MS.gene024690:intron | 35.0% | |
| TTAGAGGGGAACAATTTAGA+TGG | - | chr5.3:3247314-3247333 | MS.gene024690:intron | 35.0% | |
| TTATAACTTAGGGACAGGAA+AGG | - | chr5.3:3249241-3249260 | MS.gene024690:intron | 35.0% | |
| TTCTTCACTATGGCTCTTAT+TGG | - | chr5.3:3248957-3248976 | MS.gene024690:intron | 35.0% | |
| TTGGATAGAAAGAATCCTAG+AGG | + | chr5.3:3249623-3249642 | None:intergenic | 35.0% | |
| ! | AAAAATTGGCTCCTTCCATT+TGG | - | chr5.3:3247867-3247886 | MS.gene024690:intron | 35.0% |
| ! | AACAAAACCGTTCTAGTTAC+CGG | - | chr5.3:3246759-3246778 | MS.gene024690:intron | 35.0% |
| ! | AGATAACATGAAGCACCAAA+TGG | + | chr5.3:3247885-3247904 | None:intergenic | 35.0% |
| ! | AGTTGCTGTTCATAGAGTTA+AGG | - | chr5.3:3246875-3246894 | MS.gene024690:intron | 35.0% |
| ! | CACACCCTTAATTTTACTTC+TGG | - | chr5.3:3247498-3247517 | MS.gene024690:CDS | 35.0% |
| ! | CTGTCTCTGCCATATATTTT+TGG | - | chr5.3:3248343-3248362 | MS.gene024690:intron | 35.0% |
| ! | GATGCAGTTATACATTTTGC+TGG | - | chr5.3:3247966-3247985 | MS.gene024690:intron | 35.0% |
| ! | TGTTTGCAGTTTGTTCAGTA+TGG | - | chr5.3:3247541-3247560 | MS.gene024690:CDS | 35.0% |
| !! | AATCACTCTTTTGGAAGTCA+TGG | - | chr5.3:3248055-3248074 | MS.gene024690:CDS | 35.0% |
| !! | ATAATACAGTTGATGGCACT+GGG | - | chr5.3:3248768-3248787 | MS.gene024690:CDS | 35.0% |
| !! | CATGTTGTTGATTTAGCTGA+TGG | - | chr5.3:3249017-3249036 | MS.gene024690:intron | 35.0% |
| !! | GTCTCTGCCATATATTTTTG+GGG | - | chr5.3:3248345-3248364 | MS.gene024690:intron | 35.0% |
| !! | TATAATACAGTTGATGGCAC+TGG | - | chr5.3:3248767-3248786 | MS.gene024690:CDS | 35.0% |
| !!! | AATTACTACCGTTTTGGGTT+TGG | + | chr5.3:3246713-3246732 | None:intergenic | 35.0% |
| !!! | CGAGTAAGTGTTTTTTCGAA+AGG | + | chr5.3:3249133-3249152 | None:intergenic | 35.0% |
| !!! | GAAGGTAAGTTCCTTGTTTT+TGG | - | chr5.3:3248094-3248113 | MS.gene024690:CDS | 35.0% |
| !!! | TGCGAGTTGGTTTTTTTCAT+AGG | + | chr5.3:3247476-3247495 | None:intergenic | 35.0% |
| AAAATTCCACTTGTGAAGGC+TGG | - | chr5.3:3249777-3249796 | MS.gene024690:intron | 40.0% | |
| ACACCCTAGTGGTTATATTG+GGG | - | chr5.3:3248652-3248671 | MS.gene024690:intron | 40.0% | |
| AGAGGAAACTCTTCAGTACA+TGG | + | chr5.3:3248247-3248266 | None:intergenic | 40.0% | |
| AGAGTTGACAGCAAGGATAA+AGG | + | chr5.3:3249348-3249367 | None:intergenic | 40.0% | |
| ATATTCATGCTGTGTGTGTC+TGG | - | chr5.3:3249204-3249223 | MS.gene024690:intron | 40.0% | |
| ATGAAATGTGCCGTGATCAA+TGG | - | chr5.3:3250091-3250110 | MS.gene024690:CDS | 40.0% | |
| ATTGAGATACTTCAACCCAG+TGG | - | chr5.3:3248625-3248644 | MS.gene024690:intron | 40.0% | |
| CACACCCTAGTGGTTATATT+GGG | - | chr5.3:3248651-3248670 | MS.gene024690:intron | 40.0% | |
| CGTATCCTTAACTACAGTTG+GGG | + | chr5.3:3249480-3249499 | None:intergenic | 40.0% | |
| CTTACCTTATTCTCAGGTTC+GGG | - | chr5.3:3248986-3249005 | MS.gene024690:intron | 40.0% | |
| CTTGAATAAACTGTCTGTCC+TGG | - | chr5.3:3248884-3248903 | MS.gene024690:intron | 40.0% | |
| GACGTTTATAACTTAGGGAC+AGG | - | chr5.3:3249236-3249255 | MS.gene024690:intron | 40.0% | |
| GATATATTCTGGGTGTGGTT+TGG | - | chr5.3:3249983-3250002 | MS.gene024690:CDS | 40.0% | |
| GCCATTTATTCAGCAAGTAG+CGG | - | chr5.3:3248706-3248725 | MS.gene024690:CDS | 40.0% | |
| GCGTATCCTTAACTACAGTT+GGG | + | chr5.3:3249481-3249500 | None:intergenic | 40.0% | |
| GGCTGTGACGTTTATAACTT+AGG | - | chr5.3:3249230-3249249 | MS.gene024690:intron | 40.0% | |
| GTGCATCTCATCCAAAAACA+AGG | + | chr5.3:3248108-3248127 | None:intergenic | 40.0% | |
| TAATCCCGAACCTGAGAATA+AGG | + | chr5.3:3248993-3249012 | None:intergenic | 40.0% | |
| TAGCCCAATTCCATTGATCA+CGG | + | chr5.3:3250104-3250123 | None:intergenic | 40.0% | |
| TCACTATGGCTCTTATTGGA+TGG | - | chr5.3:3248961-3248980 | MS.gene024690:intron | 40.0% | |
| TCATCTTCAGCCACTGTATA+TGG | - | chr5.3:3248205-3248224 | MS.gene024690:CDS | 40.0% | |
| TGCGTATCCTTAACTACAGT+TGG | + | chr5.3:3249482-3249501 | None:intergenic | 40.0% | |
| TGGAATTAGAGTTGACAGCA+AGG | + | chr5.3:3249355-3249374 | None:intergenic | 40.0% | |
| TTGAGATACTTCAACCCAGT+GGG | - | chr5.3:3248626-3248645 | MS.gene024690:intron | 40.0% | |
| TTTACTCGGCGGTTTCAAAA+CGG | - | chr5.3:3246821-3246840 | MS.gene024690:intron | 40.0% | |
| TTTATTCAGCAAGTAGCGGT+TGG | - | chr5.3:3248710-3248729 | MS.gene024690:CDS | 40.0% | |
| TTTCCAAAAACTGTCAGTGC+AGG | + | chr5.3:3248743-3248762 | None:intergenic | 40.0% | |
| TTTGCTGGAATGAAAGCAGT+GGG | - | chr5.3:3247981-3248000 | MS.gene024690:intron | 40.0% | |
| ! | AACATGAAGCACCAAATGGA+AGG | + | chr5.3:3247881-3247900 | None:intergenic | 40.0% |
| ! | ACCGCTACTTGCTGAATAAA+TGG | + | chr5.3:3248710-3248729 | None:intergenic | 40.0% |
| ! | ACCGTTCTTCAGCTTTTACT+CGG | - | chr5.3:3246807-3246826 | MS.gene024690:intron | 40.0% |
| ! | AGAGCACCTTGTGAAAATTG+AGG | + | chr5.3:3246926-3246945 | None:intergenic | 40.0% |
| ! | AGATTATTTGGAATCCCGTG+AGG | + | chr5.3:3248683-3248702 | None:intergenic | 40.0% |
| ! | AGGAAAGGGAACATCAGTTT+TGG | - | chr5.3:3249256-3249275 | MS.gene024690:intron | 40.0% |
| ! | AGTTGCCTCCCTTTTCTTTA+TGG | - | chr5.3:3249537-3249556 | MS.gene024690:intron | 40.0% |
| ! | ATACCTTGGTTCGTCCATAT+GGG | + | chr5.3:3248282-3248301 | None:intergenic | 40.0% |
| ! | GATTGGGACAATCACTCTTT+TGG | - | chr5.3:3248046-3248065 | MS.gene024690:CDS | 40.0% |
| ! | TTTTGCTGGAATGAAAGCAG+TGG | - | chr5.3:3247980-3247999 | MS.gene024690:intron | 40.0% |
| !! | TAATACAGTTGATGGCACTG+GGG | - | chr5.3:3248769-3248788 | MS.gene024690:CDS | 40.0% |
| !!! | GATTATATTTTGGCCACTGC+AGG | - | chr5.3:3247581-3247600 | MS.gene024690:intron | 40.0% |
| !!! | GTAATTTTTGTGATGGCGGT+GGG | - | chr5.3:3247062-3247081 | MS.gene024690:intron | 40.0% |
| !!! | TGTAATTTTTGTGATGGCGG+TGG | - | chr5.3:3247061-3247080 | MS.gene024690:intron | 40.0% |
| AAACCCATATGGACGAACCA+AGG | - | chr5.3:3248276-3248295 | MS.gene024690:intron | 45.0% | |
| AAGGAACTCGCTGCTGAATT+TGG | - | chr5.3:3246894-3246913 | MS.gene024690:intron | 45.0% | |
| AGCAAAAACCCTTACGGCTA+TGG | - | chr5.3:3250123-3250142 | MS.gene024690:CDS | 45.0% | |
| AGGAACTCGCTGCTGAATTT+GGG | - | chr5.3:3246895-3246914 | MS.gene024690:intron | 45.0% | |
| AGTTGCCCCAACTGTAGTTA+AGG | - | chr5.3:3249472-3249491 | MS.gene024690:intron | 45.0% | |
| ATCTTGTAAGGACTGGGCAT+TGG | - | chr5.3:3249911-3249930 | MS.gene024690:CDS | 45.0% | |
| CAAGGATAAAGGCGACAGAT+AGG | + | chr5.3:3249337-3249356 | None:intergenic | 45.0% | |
| CCTCCCCAATATAACCACTA+GGG | + | chr5.3:3248658-3248677 | None:intergenic | 45.0% | |
| CTTCAGCCACTGTATATGGT+TGG | - | chr5.3:3248209-3248228 | MS.gene024690:CDS | 45.0% | |
| CTTTCAGCAGCAAACCCATA+TGG | - | chr5.3:3248265-3248284 | MS.gene024690:intron | 45.0% | |
| GCACACCCTAGTGGTTATAT+TGG | - | chr5.3:3248650-3248669 | MS.gene024690:intron | 45.0% | |
| GCACTCCATAAAGAAAAGGG+AGG | + | chr5.3:3249545-3249564 | None:intergenic | 45.0% | |
| GCCGAGTAAAAGCTGAAGAA+CGG | + | chr5.3:3246811-3246830 | None:intergenic | 45.0% | |
| GGACACGAGTAAGTGTTAGA+AGG | + | chr5.3:3249112-3249131 | None:intergenic | 45.0% | |
| GGACGAACCAAGGTATGATA+AGG | - | chr5.3:3248286-3248305 | MS.gene024690:intron | 45.0% | |
| GTAAAAGCTGAAGAACGGTG+TGG | + | chr5.3:3246806-3246825 | None:intergenic | 45.0% | |
| GTGCCGTGATCAATGGAATT+GGG | - | chr5.3:3250098-3250117 | MS.gene024690:CDS | 45.0% | |
| TATATTGGGGAGGATCCTCA+CGG | - | chr5.3:3248665-3248684 | MS.gene024690:intron | 45.0% | |
| TCAGTACATGGAACCTCCTT+CGG | + | chr5.3:3248235-3248254 | None:intergenic | 45.0% | |
| TCCTCCCCAATATAACCACT+AGG | + | chr5.3:3248659-3248678 | None:intergenic | 45.0% | |
| TCTTGTAAGGACTGGGCATT+GGG | - | chr5.3:3249912-3249931 | MS.gene024690:CDS | 45.0% | |
| TGATGTGGCAGGGCAAAATA+TGG | - | chr5.3:3250063-3250082 | MS.gene024690:CDS | 45.0% | |
| TGTGCCGTGATCAATGGAAT+TGG | - | chr5.3:3250097-3250116 | MS.gene024690:CDS | 45.0% | |
| ! | AAAACCGTTCTAGTTACCGG+CGG | - | chr5.3:3246762-3246781 | MS.gene024690:intron | 45.0% |
| ! | ATATTCTGGGTGTGGTTTGG+TGG | - | chr5.3:3249986-3250005 | MS.gene024690:CDS | 45.0% |
| ! | CATACCTTGGTTCGTCCATA+TGG | + | chr5.3:3248283-3248302 | None:intergenic | 45.0% |
| ! | GATGGTAAGAGCTTTTGAGC+AGG | - | chr5.3:3249280-3249299 | MS.gene024690:intron | 45.0% |
| ! | GTTCTTCAGCTTTTACTCGG+CGG | - | chr5.3:3246810-3246829 | MS.gene024690:intron | 45.0% |
| ! | TCAATCGTGCTGATCCAGAT+TGG | - | chr5.3:3248591-3248610 | MS.gene024690:intron | 45.0% |
| ! | TTAAGGGTGTGTTTGCGAGT+TGG | + | chr5.3:3247489-3247508 | None:intergenic | 45.0% |
| ! | TTTTGAGCAGGCATCTGGAA+AGG | - | chr5.3:3249292-3249311 | MS.gene024690:intron | 45.0% |
| !! | TATGGGTTTGCTGCTGAAAG+AGG | + | chr5.3:3248265-3248284 | None:intergenic | 45.0% |
| !! | TGGGCTAGCAAAAACCCTTA+CGG | - | chr5.3:3250117-3250136 | MS.gene024690:CDS | 45.0% |
| !!! | GGGAACATCAGTTTTGGAGA+TGG | - | chr5.3:3249262-3249281 | MS.gene024690:intron | 45.0% |
| ATATTGGGGAGGATCCTCAC+GGG | - | chr5.3:3248666-3248685 | MS.gene024690:intron | 50.0% | |
| CAGGAGATCCATAGCCGTAA+GGG | + | chr5.3:3250134-3250153 | None:intergenic | 50.0% | |
| CCCTAGTGGTTATATTGGGG+AGG | - | chr5.3:3248655-3248674 | MS.gene024690:intron | 50.0% | |
| CTTCGGCCAACCATATACAG+TGG | + | chr5.3:3248218-3248237 | None:intergenic | 50.0% | |
| GCAGCTTCTCAAAGACAGAC+CGG | - | chr5.3:3249499-3249518 | MS.gene024690:intron | 50.0% | |
| GGCTGCTGCTACTATTTGAG+TGG | + | chr5.3:3247740-3247759 | None:intergenic | 50.0% | |
| TACATGCACCCAACAGAACC+AGG | + | chr5.3:3248905-3248924 | None:intergenic | 50.0% | |
| TCAGGAGATCCATAGCCGTA+AGG | + | chr5.3:3250135-3250154 | None:intergenic | 50.0% | |
| TTGGAAGTCATGGCTGCTCA+TGG | - | chr5.3:3248065-3248084 | MS.gene024690:CDS | 50.0% | |
| TTTCAGCATCACCAGGCCTA+CGG | + | chr5.3:3249803-3249822 | None:intergenic | 50.0% | |
| ! | AGAGCTTTTGAGCAGGCATC+TGG | - | chr5.3:3249287-3249306 | MS.gene024690:intron | 50.0% |
| ! | CACTGTATATGGTTGGCCGA+AGG | - | chr5.3:3248216-3248235 | MS.gene024690:intron | 50.0% |
| ! | TGTATATGGTTGGCCGAAGG+AGG | - | chr5.3:3248219-3248238 | MS.gene024690:intron | 50.0% |
| !! | ACTGTCTGTCCTGGTTCTGT+TGG | - | chr5.3:3248893-3248912 | MS.gene024690:intron | 50.0% |
| !! | CGTCCTGCACTGACAGTTTT+TGG | - | chr5.3:3248737-3248756 | MS.gene024690:CDS | 50.0% |
| !! | CTGTCTGTCCTGGTTCTGTT+GGG | - | chr5.3:3248894-3248913 | MS.gene024690:intron | 50.0% |
| CATGCTGTGTGTGTCTGGAC+AGG | - | chr5.3:3249209-3249228 | MS.gene024690:intron | 55.0% | |
| GGCTGCTCATGGATGCAAGA+AGG | - | chr5.3:3248076-3248095 | MS.gene024690:CDS | 55.0% | |
| GGTGTGGCTACCGATGTAAC+CGG | + | chr5.3:3246790-3246809 | None:intergenic | 55.0% | |
| ! | TCTCGCGTCGGCATCACTAA+TGG | - | chr5.3:3246630-3246649 | MS.gene024690:CDS | 55.0% |
| CACTAGGGTGTGCACCCACT+GGG | + | chr5.3:3248643-3248662 | None:intergenic | 60.0% | |
| CTACGGCCAGCCTTCACAAG+TGG | + | chr5.3:3249786-3249805 | None:intergenic | 60.0% | |
| GCAGGTAGACATCCGGGACA+GGG | - | chr5.3:3247599-3247618 | MS.gene024690:intron | 60.0% | |
| GCCACTGCAGGTAGACATCC+GGG | - | chr5.3:3247593-3247612 | MS.gene024690:intron | 60.0% | |
| GGCACCGCCGGTAACTAGAA+CGG | + | chr5.3:3246769-3246788 | None:intergenic | 60.0% | |
| GGCCACTGCAGGTAGACATC+CGG | - | chr5.3:3247592-3247611 | MS.gene024690:intron | 60.0% | |
| TCCCGGATGTCTACCTGCAG+TGG | + | chr5.3:3247597-3247616 | None:intergenic | 60.0% | |
| TGCAGGTAGACATCCGGGAC+AGG | - | chr5.3:3247598-3247617 | MS.gene024690:intron | 60.0% | |
| ! | CACTTGTGAAGGCTGGCCGT+AGG | - | chr5.3:3249784-3249803 | MS.gene024690:intron | 60.0% |
| ! | GTTCTAGTTACCGGCGGTGC+CGG | - | chr5.3:3246768-3246787 | MS.gene024690:intron | 60.0% |
| ACCGATGTAACCGGCACCGC+CGG | + | chr5.3:3246781-3246800 | None:intergenic | 65.0% | |
| CCACTAGGGTGTGCACCCAC+TGG | + | chr5.3:3248644-3248663 | None:intergenic | 65.0% | |
| CCAGTGGGTGCACACCCTAG+TGG | - | chr5.3:3248641-3248660 | MS.gene024690:intron | 65.0% | |
| GCTCAAGTGCAGCCCTGTCC+CGG | + | chr5.3:3247614-3247633 | None:intergenic | 65.0% | |
| !! | ACCGGCGGTGCCGGTTACAT+CGG | - | chr5.3:3246777-3246796 | MS.gene024690:intron | 65.0% |
| ! | GTGAAGGCTGGCCGTAGGCC+TGG | - | chr5.3:3249789-3249808 | MS.gene024690:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 3246624 | 3250167 | 3246624 | ID=MS.gene024690 |
| chr5.3 | mRNA | 3246624 | 3250167 | 3246624 | ID=MS.gene024690.t1;Parent=MS.gene024690 |
| chr5.3 | exon | 3249853 | 3250167 | 3249853 | ID=MS.gene024690.t1.exon1;Parent=MS.gene024690.t1 |
| chr5.3 | CDS | 3249853 | 3250167 | 3249853 | ID=cds.MS.gene024690.t1;Parent=MS.gene024690.t1 |
| chr5.3 | exon | 3249139 | 3249188 | 3249139 | ID=MS.gene024690.t1.exon2;Parent=MS.gene024690.t1 |
| chr5.3 | CDS | 3249139 | 3249188 | 3249139 | ID=cds.MS.gene024690.t1;Parent=MS.gene024690.t1 |
| chr5.3 | exon | 3248694 | 3248829 | 3248694 | ID=MS.gene024690.t1.exon3;Parent=MS.gene024690.t1 |
| chr5.3 | CDS | 3248694 | 3248829 | 3248694 | ID=cds.MS.gene024690.t1;Parent=MS.gene024690.t1 |
| chr5.3 | exon | 3248494 | 3248595 | 3248494 | ID=MS.gene024690.t1.exon4;Parent=MS.gene024690.t1 |
| chr5.3 | CDS | 3248494 | 3248595 | 3248494 | ID=cds.MS.gene024690.t1;Parent=MS.gene024690.t1 |
| chr5.3 | exon | 3248001 | 3248228 | 3248001 | ID=MS.gene024690.t1.exon5;Parent=MS.gene024690.t1 |
| chr5.3 | CDS | 3248001 | 3248228 | 3248001 | ID=cds.MS.gene024690.t1;Parent=MS.gene024690.t1 |
| chr5.3 | exon | 3247711 | 3247789 | 3247711 | ID=MS.gene024690.t1.exon6;Parent=MS.gene024690.t1 |
| chr5.3 | CDS | 3247711 | 3247789 | 3247711 | ID=cds.MS.gene024690.t1;Parent=MS.gene024690.t1 |
| chr5.3 | exon | 3247478 | 3247560 | 3247478 | ID=MS.gene024690.t1.exon7;Parent=MS.gene024690.t1 |
| chr5.3 | CDS | 3247478 | 3247560 | 3247478 | ID=cds.MS.gene024690.t1;Parent=MS.gene024690.t1 |
| chr5.3 | exon | 3246923 | 3247014 | 3246923 | ID=MS.gene024690.t1.exon8;Parent=MS.gene024690.t1 |
| chr5.3 | CDS | 3246923 | 3247014 | 3246923 | ID=cds.MS.gene024690.t1;Parent=MS.gene024690.t1 |
| chr5.3 | exon | 3246624 | 3246717 | 3246624 | ID=MS.gene024690.t1.exon9;Parent=MS.gene024690.t1 |
| chr5.3 | CDS | 3246624 | 3246717 | 3246624 | ID=cds.MS.gene024690.t1;Parent=MS.gene024690.t1 |
| Gene Sequence |
| Protein sequence |
