Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002251.t1 | XP_003593280.1 | 95.1 | 245 | 10 | 1 | 1 | 243 | 1 | 245 | 1.50E-134 | 488.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002251.t1 | O82225 | 43.6 | 243 | 130 | 1 | 7 | 242 | 5 | 247 | 4.8e-62 | 239.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002251.t1 | A2Q1P2 | 95.1 | 245 | 10 | 1 | 1 | 243 | 1 | 245 | 1.1e-134 | 488.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene071221 | MS.gene002251 | PPI |
| MS.gene94216 | MS.gene002251 | PPI |
| MS.gene76089 | MS.gene002251 | PPI |
| MS.gene002251 | MS.gene053590 | PPI |
| MS.gene002251 | MS.gene02208 | PPI |
| MS.gene053590 | MS.gene002251 | PPI |
| MS.gene068013 | MS.gene002251 | PPI |
| MS.gene002251 | MS.gene028495 | PPI |
| MS.gene002251 | MS.gene01224 | PPI |
| MS.gene90232 | MS.gene002251 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002251.t1 | MTR_2g009720 | 93.878 | 245 | 13 | 1 | 1 | 243 | 1 | 245 | 1.71e-163 | 452 |
| MS.gene002251.t1 | MTR_2g009720 | 93.868 | 212 | 11 | 1 | 1 | 210 | 1 | 212 | 3.38e-138 | 388 |
| MS.gene002251.t1 | MTR_5g083210 | 59.091 | 242 | 96 | 1 | 2 | 240 | 1 | 242 | 1.34e-107 | 310 |
| MS.gene002251.t1 | MTR_4g093250 | 60.417 | 240 | 90 | 1 | 8 | 242 | 9 | 248 | 1.61e-100 | 293 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002251.t1 | AT2G23970 | 43.621 | 243 | 130 | 1 | 7 | 242 | 5 | 247 | 1.37e-78 | 237 |
| MS.gene002251.t1 | AT4G30550 | 40.984 | 244 | 136 | 1 | 6 | 241 | 6 | 249 | 9.48e-71 | 217 |
| MS.gene002251.t1 | AT4G30530 | 39.431 | 246 | 142 | 1 | 5 | 243 | 2 | 247 | 5.82e-67 | 207 |
| MS.gene002251.t1 | AT4G30540 | 40.891 | 247 | 139 | 2 | 1 | 242 | 1 | 245 | 2.02e-66 | 206 |
| MS.gene002251.t1 | AT2G23960 | 38.776 | 245 | 143 | 1 | 5 | 242 | 2 | 246 | 1.97e-65 | 204 |
| MS.gene002251.t1 | AT2G23960 | 40.777 | 206 | 115 | 1 | 5 | 203 | 2 | 207 | 1.58e-58 | 185 |
Find 55 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTGTGTTGTAGATAAT+TGG | 0.121581 | 2.3:+73271360 | MS.gene002251:intron |
| CCTGCTGAAGCAGAGGTAAT+TGG | 0.304947 | 2.3:+73271609 | MS.gene002251:CDS |
| AGACTGGAATTGAGATGTTT+AGG | 0.334640 | 2.3:+73271643 | MS.gene002251:CDS |
| AAAAGACATGGAGGTTGTTA+TGG | 0.340928 | 2.3:+73268492 | MS.gene002251:CDS |
| AAGATGTCAATGTTGAATTC+AGG | 0.358354 | 2.3:-73271699 | None:intergenic |
| AAAATCCTTGGCATTTGCTT+TGG | 0.371037 | 2.3:+73268714 | MS.gene002251:CDS |
| TTATTGTGTTGTAGATAATT+GGG | 0.392824 | 2.3:+73271361 | MS.gene002251:intron |
| GGAGGGAAAGTGGTGCGTTC+TGG | 0.393122 | 2.3:+73271393 | MS.gene002251:CDS |
| AAGAGATGTTAGAAAGAGTA+AGG | 0.415473 | 2.3:+73268418 | None:intergenic |
| TAGATAATTGGGCGTGCATT+GGG | 0.419343 | 2.3:+73271372 | MS.gene002251:intron |
| TGGCATTTGCTTTGGCCACC+AGG | 0.426626 | 2.3:+73268722 | MS.gene002251:CDS |
| GATGATGTTCATTTCTATGA+TGG | 0.435255 | 2.3:+73268594 | MS.gene002251:CDS |
| GGTGCGTTCTGGTGCAGGTT+GGG | 0.436830 | 2.3:+73271404 | MS.gene002251:CDS |
| TACGTACCTGGATTAAATTA+CGG | 0.443578 | 2.3:-73271749 | None:intergenic |
| AGGTATGGAAATCACATGTT+GGG | 0.455673 | 2.3:+73271663 | MS.gene002251:CDS |
| TTAAATTACGGTTAGTGATA+CGG | 0.464304 | 2.3:-73271737 | None:intergenic |
| TTGATGAATCCAAGGGTCAT+TGG | 0.467310 | 2.3:-73268652 | None:intergenic |
| TGTTGAATTCAGGATGGCCT+TGG | 0.468204 | 2.3:-73271689 | None:intergenic |
| TCTGGTGCAGGTTGGGACAT+AGG | 0.478858 | 2.3:+73271411 | MS.gene002251:CDS |
| GGAATTGAGATGTTTAGGTA+TGG | 0.499218 | 2.3:+73271648 | MS.gene002251:CDS |
| AAAGTGGTGCGTTCTGGTGC+AGG | 0.500469 | 2.3:+73271399 | MS.gene002251:CDS |
| CCAATTACCTCTGCTTCAGC+AGG | 0.508145 | 2.3:-73271609 | None:intergenic |
| CTTTGTCTCACATTTCTGAA+AGG | 0.513703 | 2.3:+73272361 | MS.gene002251:CDS |
| TCAATGTGTGAACAAGAGTA+AGG | 0.513857 | 2.3:-73268677 | None:intergenic |
| ATGCACATGCCAATGACCCT+TGG | 0.523318 | 2.3:+73268643 | MS.gene002251:CDS |
| TAGAAAGAGTAAGGAAGAAG+AGG | 0.528715 | 2.3:+73268427 | MS.gene002251:CDS |
| GCGTGCATTGGGAGGGAAAG+TGG | 0.528941 | 2.3:+73271383 | MS.gene002251:CDS |
| TAGGTATGGAAATCACATGT+TGG | 0.530712 | 2.3:+73271662 | MS.gene002251:CDS |
| TTTCACTCTTCAAATGCCAC+CGG | 0.531268 | 2.3:+73271487 | MS.gene002251:CDS |
| CTTCAAATGCCACCGGGATG+AGG | 0.532803 | 2.3:+73271494 | MS.gene002251:CDS |
| TGCTTCGGATGTAAAGATGA+AGG | 0.533024 | 2.3:+73272300 | MS.gene002251:CDS |
| AATCACATGTTGGGCATCCA+AGG | 0.533204 | 2.3:+73271672 | MS.gene002251:CDS |
| ATTGGTTGGTCAGAAAAGAC+TGG | 0.534534 | 2.3:+73271627 | MS.gene002251:CDS |
| GAATATTTGTTGAAAAGACA+TGG | 0.539899 | 2.3:+73268480 | MS.gene002251:CDS |
| AAATGAACATCATCGTCCTC+AGG | 0.539952 | 2.3:-73268585 | None:intergenic |
| GTAGATAATTGGGCGTGCAT+TGG | 0.541921 | 2.3:+73271371 | MS.gene002251:intron |
| CACTAACCGTAATTTAATCC+AGG | 0.545302 | 2.3:+73271743 | MS.gene002251:CDS |
| GTAAGGAGTTGATGAATCCA+AGG | 0.558387 | 2.3:-73268660 | None:intergenic |
| TTCACTCTTCAAATGCCACC+GGG | 0.561202 | 2.3:+73271488 | MS.gene002251:CDS |
| ATAATTGGGCGTGCATTGGG+AGG | 0.577537 | 2.3:+73271375 | MS.gene002251:CDS |
| TGGTGCGTTCTGGTGCAGGT+TGG | 0.584609 | 2.3:+73271403 | MS.gene002251:CDS |
| GGCTGAGGAAGGAGAAACAT+GGG | 0.587236 | 2.3:+73268533 | MS.gene002251:CDS |
| TAATTGGGCGTGCATTGGGA+GGG | 0.594620 | 2.3:+73271376 | MS.gene002251:CDS |
| TAGAAATAAATACCTCATCC+CGG | 0.596369 | 2.3:-73271506 | None:intergenic |
| AGATTTGCCTGCTGAAGCAG+AGG | 0.607007 | 2.3:+73271602 | MS.gene002251:CDS |
| GAGATCCAGACACAGAGGCA+TGG | 0.621789 | 2.3:+73272332 | MS.gene002251:CDS |
| CTGAAGCAGAGGTAATTGGT+TGG | 0.642332 | 2.3:+73271613 | MS.gene002251:CDS |
| TGGCTGAGGAAGGAGAAACA+TGG | 0.647270 | 2.3:+73268532 | MS.gene002251:CDS |
| TGTTAATGAAGAGTTTCCTG+AGG | 0.653611 | 2.3:+73268569 | MS.gene002251:CDS |
| GGTGGCCAAAGCAAATGCCA+AGG | 0.653984 | 2.3:-73268719 | None:intergenic |
| TAAGGAGTTGATGAATCCAA+GGG | 0.668180 | 2.3:-73268659 | None:intergenic |
| TGTCAATGTTGAATTCAGGA+TGG | 0.677095 | 2.3:-73271695 | None:intergenic |
| TATTTGTTGAAAAGACATGG+AGG | 0.690658 | 2.3:+73268483 | MS.gene002251:CDS |
| AAATAAATACCTCATCCCGG+TGG | 0.739123 | 2.3:-73271503 | None:intergenic |
| ATTACGAGATCCAGACACAG+AGG | 0.767805 | 2.3:+73272327 | MS.gene002251:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATATATTATTTTTATAA+AGG | - | chr2.3:73270091-73270110 | None:intergenic | 0.0% |
| !! | AAAAAAAAAAAATAGATACA+AGG | + | chr2.3:73270789-73270808 | MS.gene002251:intron | 10.0% |
| !! | AAAATATACTTATATAAGTT+CGG | + | chr2.3:73269064-73269083 | MS.gene002251:intron | 10.0% |
| !! | ATAATAAAACAAAATTCATT+TGG | - | chr2.3:73270116-73270135 | None:intergenic | 10.0% |
| !! | CATAATATATAATATATGAT+TGG | + | chr2.3:73269306-73269325 | MS.gene002251:intron | 10.0% |
| !!! | AAAATAATTTTAAACATTTG+TGG | - | chr2.3:73270846-73270865 | None:intergenic | 10.0% |
| !!! | AATGTTTAAAATTATTTTTG+CGG | + | chr2.3:73270848-73270867 | MS.gene002251:intron | 10.0% |
| !!! | TATTAATAAAGTACTAATTT+AGG | - | chr2.3:73269922-73269941 | None:intergenic | 10.0% |
| !! | AAATATACTTATATAAGTTC+GGG | + | chr2.3:73269065-73269084 | MS.gene002251:intron | 15.0% |
| !! | AATAACTATGAACTAATTAA+TGG | + | chr2.3:73269205-73269224 | MS.gene002251:intron | 15.0% |
| !! | ATAAATTAAAACCAAGAATA+TGG | + | chr2.3:73270058-73270077 | MS.gene002251:intron | 15.0% |
| !! | ATATTAAGAAAAAAATGCAA+AGG | + | chr2.3:73270418-73270437 | MS.gene002251:intron | 15.0% |
| !! | GCAAATAAAACTTATAAATA+AGG | - | chr2.3:73272163-73272182 | None:intergenic | 15.0% |
| !!! | TATGTTTAAGATTATTAGTA+TGG | - | chr2.3:73271828-73271847 | None:intergenic | 15.0% |
| !!! | TTCTTTAAAAATAATTTGTC+TGG | + | chr2.3:73270263-73270282 | MS.gene002251:intron | 15.0% |
| !! | AAAAGACTATAATGATAAGA+AGG | + | chr2.3:73269980-73269999 | MS.gene002251:intron | 20.0% |
| !! | AATAAGAAGAGAGAAAAAAA+AGG | - | chr2.3:73268857-73268876 | None:intergenic | 20.0% |
| !! | AATCACATAAAAATGTTTAG+AGG | + | chr2.3:73268789-73268808 | MS.gene002251:intron | 20.0% |
| !! | ACATAATATACATGAACTTA+AGG | + | chr2.3:73271843-73271862 | MS.gene002251:intron | 20.0% |
| !! | AGTATTACTTAATTATTACC+TGG | - | chr2.3:73268743-73268762 | None:intergenic | 20.0% |
| !! | ATGATATTTGAACAACTATT+TGG | + | chr2.3:73270596-73270615 | MS.gene002251:intron | 20.0% |
| !! | CATAATATACATGAACTTAA+GGG | + | chr2.3:73271844-73271863 | MS.gene002251:intron | 20.0% |
| !! | TATAAATAAGGACAAAGATA+AGG | - | chr2.3:73272151-73272170 | None:intergenic | 20.0% |
| !! | TCACAAAAGTTGTTTAAAAA+TGG | + | chr2.3:73268950-73268969 | MS.gene002251:intron | 20.0% |
| !! | TCATTTCTCAAAGAAAAATA+TGG | + | chr2.3:73270751-73270770 | MS.gene002251:intron | 20.0% |
| !! | TGTTTAACAAGAAAAATGAT+AGG | + | chr2.3:73268996-73269015 | MS.gene002251:intron | 20.0% |
| !! | TTAAGTGATTGTATTTGATT+AGG | + | chr2.3:73271575-73271594 | MS.gene002251:intron | 20.0% |
| !! | TTATTGTGTTGTAGATAATT+GGG | + | chr2.3:73271361-73271380 | MS.gene002251:intron | 20.0% |
| !! | TTTATTGTGTTGTAGATAAT+TGG | + | chr2.3:73271360-73271379 | MS.gene002251:intron | 20.0% |
| !!! | AAAAAGCTAATATTTTCTTG+GGG | - | chr2.3:73269862-73269881 | None:intergenic | 20.0% |
| !!! | ACATTCTAAAAAAAGTTCAA+AGG | - | chr2.3:73271892-73271911 | None:intergenic | 20.0% |
| !!! | ATGTGGTCTAATTTTATTAT+GGG | + | chr2.3:73270968-73270987 | MS.gene002251:intron | 20.0% |
| !!! | ATTAACCTTCTTTTTTTTAG+AGG | - | chr2.3:73270016-73270035 | None:intergenic | 20.0% |
| !!! | ATTATATCTTTTTCTCATGA+TGG | + | chr2.3:73271547-73271566 | MS.gene002251:intron | 20.0% |
| !!! | GAAAAAGCTAATATTTTCTT+GGG | - | chr2.3:73269863-73269882 | None:intergenic | 20.0% |
| !!! | TCATTAAAGTTGTTTGATTT+TGG | - | chr2.3:73268831-73268850 | None:intergenic | 20.0% |
| !!! | TTGAACTTTTTTTAGAATGT+TGG | + | chr2.3:73271892-73271911 | MS.gene002251:intron | 20.0% |
| !!! | TTTTCATTGATCAAAAACAA+TGG | + | chr2.3:73270639-73270658 | MS.gene002251:intron | 20.0% |
| !!! | TTTTTTTTCTCTCTTCTTAT+TGG | + | chr2.3:73268856-73268875 | MS.gene002251:intron | 20.0% |
| ! | AAAATCTATACGTCTATAAG+TGG | + | chr2.3:73271938-73271957 | MS.gene002251:intron | 25.0% |
| ! | AAAATTGATATGTGACAAGA+AGG | - | chr2.3:73269259-73269278 | None:intergenic | 25.0% |
| ! | AAATTGTTAGTGACATAACA+TGG | + | chr2.3:73271259-73271278 | MS.gene002251:intron | 25.0% |
| ! | AATAACTCCAACAAAACATA+TGG | - | chr2.3:73270892-73270911 | None:intergenic | 25.0% |
| ! | AATCCTTCTAAACATACTTA+CGG | - | chr2.3:73270484-73270503 | None:intergenic | 25.0% |
| ! | AGTATTAATATGTGGATGTT+TGG | + | chr2.3:73272261-73272280 | MS.gene002251:intron | 25.0% |
| ! | ATATAAATAAATACACCCTC+CGG | - | chr2.3:73269818-73269837 | None:intergenic | 25.0% |
| ! | ATTACTTAATTATTACCTGG+TGG | - | chr2.3:73268740-73268759 | None:intergenic | 25.0% |
| ! | CATTCATTAAATGATGTATG+TGG | + | chr2.3:73269722-73269741 | MS.gene002251:intron | 25.0% |
| ! | TAAACAAGTAACGATATTAG+TGG | - | chr2.3:73269885-73269904 | None:intergenic | 25.0% |
| ! | TAAAGTGATTTAGTAGTTTG+AGG | - | chr2.3:73269598-73269617 | None:intergenic | 25.0% |
| ! | TAGATACAAGGATAATGAAT+TGG | + | chr2.3:73270801-73270820 | MS.gene002251:intron | 25.0% |
| ! | TATCAGGGATAATTTATGTA+GGG | + | chr2.3:73271111-73271130 | MS.gene002251:intron | 25.0% |
| ! | TCTCATTAATTGTGGTATTT+AGG | + | chr2.3:73270230-73270249 | MS.gene002251:intron | 25.0% |
| ! | TTAAATTACGGTTAGTGATA+CGG | - | chr2.3:73271740-73271759 | None:intergenic | 25.0% |
| !! | AAATTAAACATGTCACTTGA+TGG | - | chr2.3:73269466-73269485 | None:intergenic | 25.0% |
| !! | AATTAAACATGTCACTTGAT+GGG | - | chr2.3:73269465-73269484 | None:intergenic | 25.0% |
| !! | ATTGCTCATTTTCTTTTTAG+AGG | - | chr2.3:73270578-73270597 | None:intergenic | 25.0% |
| !! | CATGTGGTCTAATTTTATTA+TGG | + | chr2.3:73270967-73270986 | MS.gene002251:intron | 25.0% |
| !! | GAATATTTGTTGAAAAGACA+TGG | + | chr2.3:73268480-73268499 | MS.gene002251:CDS | 25.0% |
| !! | GATTTCCTCTAAAAAAAAGA+AGG | + | chr2.3:73270008-73270027 | MS.gene002251:intron | 25.0% |
| !! | GGAAAAAGCTAATATTTTCT+TGG | - | chr2.3:73269864-73269883 | None:intergenic | 25.0% |
| !! | GTCACTTAACAAACATATTT+TGG | - | chr2.3:73271286-73271305 | None:intergenic | 25.0% |
| !! | TAATGGTGTGATTGAATTTT+AGG | + | chr2.3:73269222-73269241 | MS.gene002251:intron | 25.0% |
| !! | TGTGGTCTAATTTTATTATG+GGG | + | chr2.3:73270969-73270988 | MS.gene002251:intron | 25.0% |
| !!! | AGAAGGATTTTTTTTCAAGT+AGG | + | chr2.3:73270495-73270514 | MS.gene002251:intron | 25.0% |
| !!! | GACAAAAGAGTATTAATATG+TGG | + | chr2.3:73272253-73272272 | MS.gene002251:intron | 25.0% |
| !!! | GTGTCTTACTTTTTTTTTTC+TGG | - | chr2.3:73271210-73271229 | None:intergenic | 25.0% |
| !!! | TAATGATTTTAATTCTCACC+CGG | + | chr2.3:73270032-73270051 | MS.gene002251:intron | 25.0% |
| !!! | TTTTTTTCAAGTAGGCAAAT+GGG | + | chr2.3:73270503-73270522 | MS.gene002251:intron | 25.0% |
| !!! | TTTTTTTTCAAGTAGGCAAA+TGG | + | chr2.3:73270502-73270521 | MS.gene002251:intron | 25.0% |
| AAATCAGAAGATTTGATCCA+TGG | + | chr2.3:73271982-73272001 | MS.gene002251:intron | 30.0% | |
| AAGATGTCAATGTTGAATTC+AGG | - | chr2.3:73271702-73271721 | None:intergenic | 30.0% | |
| AATGAAAAGAGAGAAAAGGA+AGG | - | chr2.3:73270627-73270646 | None:intergenic | 30.0% | |
| AATTCTATCACGCCTTAATT+AGG | + | chr2.3:73269363-73269382 | MS.gene002251:intron | 30.0% | |
| AGAAAAGAGACATTCTTACA+TGG | + | chr2.3:73269521-73269540 | MS.gene002251:intron | 30.0% | |
| ATGTGCAATTGACCTAATTA+AGG | - | chr2.3:73269378-73269397 | None:intergenic | 30.0% | |
| CTATCAGGGATAATTTATGT+AGG | + | chr2.3:73271110-73271129 | MS.gene002251:intron | 30.0% | |
| GATAATTTATGTAGGGATTG+CGG | + | chr2.3:73271118-73271137 | MS.gene002251:intron | 30.0% | |
| GATCAATGAAAAGAGAGAAA+AGG | - | chr2.3:73270631-73270650 | None:intergenic | 30.0% | |
| GATGATGTTCATTTCTATGA+TGG | + | chr2.3:73268594-73268613 | MS.gene002251:CDS | 30.0% | |
| GTTAAGTGACACATACTTAT+TGG | + | chr2.3:73271296-73271315 | MS.gene002251:intron | 30.0% | |
| TAACCGTAAGTATGTTTAGA+AGG | + | chr2.3:73270478-73270497 | MS.gene002251:intron | 30.0% | |
| TACGTACCTGGATTAAATTA+CGG | - | chr2.3:73271752-73271771 | None:intergenic | 30.0% | |
| TAGAAATAAATACCTCATCC+CGG | - | chr2.3:73271509-73271528 | None:intergenic | 30.0% | |
| TGGTTTCTTCACAAAAATGT+TGG | + | chr2.3:73268512-73268531 | MS.gene002251:CDS | 30.0% | |
| TTTATGAGTCATAACTCAGT+TGG | + | chr2.3:73271084-73271103 | MS.gene002251:intron | 30.0% | |
| ! | ATCAGTACCATATGTTTTGT+TGG | + | chr2.3:73270882-73270901 | MS.gene002251:intron | 30.0% |
| ! | GTTTTGCTTATAATAGTGAC+CGG | + | chr2.3:73269796-73269815 | MS.gene002251:intron | 30.0% |
| ! | GTTTTGCTTATAATAGTGAC+CGG | - | chr2.3:73269815-73269796 | None:intergenic | 30.0% |
| ! | TATATTGCTCTTGTTTGAGT+TGG | - | chr2.3:73272203-73272222 | None:intergenic | 30.0% |
| ! | TATTTGTTGAAAAGACATGG+AGG | + | chr2.3:73268483-73268502 | MS.gene002251:CDS | 30.0% |
| ! | TGTAAGAATGTCTCTTTTCT+TGG | - | chr2.3:73269521-73269540 | None:intergenic | 30.0% |
| !! | AGGTATGCAATTTTAATGTG+TGG | + | chr2.3:73268447-73268466 | MS.gene002251:CDS | 30.0% |
| !! | ATATGGTACTGATTATTGAC+AGG | - | chr2.3:73270875-73270894 | None:intergenic | 30.0% |
| !! | TTGAAGAGTGAAAGTTTTGA+TGG | - | chr2.3:73271480-73271499 | None:intergenic | 30.0% |
| !!! | CTGGTTTTGACTAATACATA+TGG | + | chr2.3:73270540-73270559 | MS.gene002251:intron | 30.0% |
| !!! | CTTGGTTTTAATTTATGCTC+CGG | - | chr2.3:73270054-73270073 | None:intergenic | 30.0% |
| !!! | TTGGTTTTAATTTATGCTCC+GGG | - | chr2.3:73270053-73270072 | None:intergenic | 30.0% |
| !!! | TTTTTTCAAGTAGGCAAATG+GGG | + | chr2.3:73270504-73270523 | MS.gene002251:intron | 30.0% |
| AAAAGACATGGAGGTTGTTA+TGG | + | chr2.3:73268492-73268511 | MS.gene002251:CDS | 35.0% | |
| AAAATCCTTGGCATTTGCTT+TGG | + | chr2.3:73268714-73268733 | MS.gene002251:CDS | 35.0% | |
| AAGAATAAGAGACACGAAGA+TGG | + | chr2.3:73269123-73269142 | MS.gene002251:intron | 35.0% | |
| AAGGTCAATGTCCATATTCT+TGG | - | chr2.3:73270072-73270091 | None:intergenic | 35.0% | |
| AATTAGACCACATGTCGAAA+AGG | - | chr2.3:73270961-73270980 | None:intergenic | 35.0% | |
| AGAAGATTTGATCCATGGAA+TGG | + | chr2.3:73271987-73272006 | MS.gene002251:intron | 35.0% | |
| AGACTGGAATTGAGATGTTT+AGG | + | chr2.3:73271643-73271662 | MS.gene002251:CDS | 35.0% | |
| AGATTCACACACATTATGTG+TGG | - | chr2.3:73271169-73271188 | None:intergenic | 35.0% | |
| AGGTATGGAAATCACATGTT+GGG | + | chr2.3:73271663-73271682 | MS.gene002251:CDS | 35.0% | |
| ATACCACAATTAATGAGACG+AGG | - | chr2.3:73270228-73270247 | None:intergenic | 35.0% | |
| ATGATTTGATGCATGAGATG+AGG | + | chr2.3:73269953-73269972 | MS.gene002251:intron | 35.0% | |
| CACTAACCGTAATTTAATCC+AGG | + | chr2.3:73271743-73271762 | MS.gene002251:CDS | 35.0% | |
| CTAAACATACTTACGGTTAG+AGG | - | chr2.3:73270477-73270496 | None:intergenic | 35.0% | |
| CTTTGTCTCACATTTCTGAA+AGG | + | chr2.3:73272361-73272380 | MS.gene002251:CDS | 35.0% | |
| GAAGATTTGATCCATGGAAT+GGG | + | chr2.3:73271988-73272007 | MS.gene002251:intron | 35.0% | |
| GGAATTGAGATGTTTAGGTA+TGG | + | chr2.3:73271648-73271667 | MS.gene002251:CDS | 35.0% | |
| GTGTGTAAATAATACGTACC+TGG | - | chr2.3:73271764-73271783 | None:intergenic | 35.0% | |
| TAGAAAGAGTAAGGAAGAAG+AGG | + | chr2.3:73268427-73268446 | MS.gene002251:CDS | 35.0% | |
| TAGGTATGGAAATCACATGT+TGG | + | chr2.3:73271662-73271681 | MS.gene002251:CDS | 35.0% | |
| TCAATGTGTGAACAAGAGTA+AGG | - | chr2.3:73268680-73268699 | None:intergenic | 35.0% | |
| TCCCTCAACAAAAAAATCCT+TGG | + | chr2.3:73268702-73268721 | MS.gene002251:CDS | 35.0% | |
| TCTTGGGGAAAATTCTACTA+TGG | - | chr2.3:73269847-73269866 | None:intergenic | 35.0% | |
| TGATTTGATGCATGAGATGA+GGG | + | chr2.3:73269954-73269973 | MS.gene002251:intron | 35.0% | |
| TGTCAATGTTGAATTCAGGA+TGG | - | chr2.3:73271698-73271717 | None:intergenic | 35.0% | |
| TGTTAATGAAGAGTTTCCTG+AGG | + | chr2.3:73268569-73268588 | MS.gene002251:CDS | 35.0% | |
| ! | AGCATATATGAATGATGACG+AGG | - | chr2.3:73271792-73271811 | None:intergenic | 35.0% |
| ! | ATATGTTCCTTTTCGACATG+TGG | + | chr2.3:73270951-73270970 | MS.gene002251:intron | 35.0% |
| !! | TAAGGAGTTGATGAATCCAA+GGG | - | chr2.3:73268662-73268681 | None:intergenic | 35.0% |
| !! | TGCAATTTTAATGTGTGGAG+AGG | + | chr2.3:73268452-73268471 | MS.gene002251:CDS | 35.0% |
| !!! | GCCAAGGATTTTTTTGTTGA+GGG | - | chr2.3:73268706-73268725 | None:intergenic | 35.0% |
| !!! | TATGATGGTTTTGTCATCAC+TGG | + | chr2.3:73268609-73268628 | MS.gene002251:CDS | 35.0% |
| !!! | TGCCAAGGATTTTTTTGTTG+AGG | - | chr2.3:73268707-73268726 | None:intergenic | 35.0% |
| !!! | TTTTTCAAGTAGGCAAATGG+GGG | + | chr2.3:73270505-73270524 | MS.gene002251:intron | 35.0% |
| AAATAAATACCTCATCCCGG+TGG | - | chr2.3:73271506-73271525 | None:intergenic | 40.0% | |
| AAATGAACATCATCGTCCTC+AGG | - | chr2.3:73268588-73268607 | None:intergenic | 40.0% | |
| AAGGCATACATCACAAAGCA+AGG | - | chr2.3:73272132-73272151 | None:intergenic | 40.0% | |
| ACACATTATGTGTGGAGAAG+TGG | - | chr2.3:73271161-73271180 | None:intergenic | 40.0% | |
| ACATTATGTGTGGAGAAGTG+GGG | - | chr2.3:73271159-73271178 | None:intergenic | 40.0% | |
| ACATTTGTGGTTCAGACAGA+CGG | - | chr2.3:73270833-73270852 | None:intergenic | 40.0% | |
| AGGCATACATCACAAAGCAA+GGG | - | chr2.3:73272131-73272150 | None:intergenic | 40.0% | |
| ATGGGGGGAAAATATGTTTC+TGG | + | chr2.3:73270521-73270540 | MS.gene002251:intron | 40.0% | |
| CACAATTAATGAGACGAGGA+GGG | - | chr2.3:73270224-73270243 | None:intergenic | 40.0% | |
| CACATTATGTGTGGAGAAGT+GGG | - | chr2.3:73271160-73271179 | None:intergenic | 40.0% | |
| GATTTGATGCATGAGATGAG+GGG | + | chr2.3:73269955-73269974 | MS.gene002251:intron | 40.0% | |
| TAAGACACTCTCATCATGCA+TGG | + | chr2.3:73271222-73271241 | MS.gene002251:intron | 40.0% | |
| TAGATAATTGGGCGTGCATT+GGG | + | chr2.3:73271372-73271391 | MS.gene002251:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | chr2.3:73269800-73269819 | MS.gene002251:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr2.3:73269819-73269800 | None:intergenic | 40.0% | |
| TGCTTCGGATGTAAAGATGA+AGG | + | chr2.3:73272300-73272319 | MS.gene002251:CDS | 40.0% | |
| TTGATGAATCCAAGGGTCAT+TGG | - | chr2.3:73268655-73268674 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr2.3:73269799-73269818 | MS.gene002251:intron | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr2.3:73269818-73269799 | None:intergenic | 40.0% | |
| TTTCACTCTTCAAATGCCAC+CGG | + | chr2.3:73271487-73271506 | MS.gene002251:CDS | 40.0% | |
| ! | AAACATGTCACTTGATGGGA+CGG | - | chr2.3:73269461-73269480 | None:intergenic | 40.0% |
| ! | ACAAAAATGTTGGCTGAGGA+AGG | + | chr2.3:73268522-73268541 | MS.gene002251:CDS | 40.0% |
| ! | ATGTGGATGTTTGGAATTGC+AGG | + | chr2.3:73272270-73272289 | MS.gene002251:intron | 40.0% |
| ! | ATTGCAGGAAGCTTTTGCTT+CGG | + | chr2.3:73272285-73272304 | MS.gene002251:intron | 40.0% |
| ! | ATTGGTTGGTCAGAAAAGAC+TGG | + | chr2.3:73271627-73271646 | MS.gene002251:CDS | 40.0% |
| ! | CTTCACAAAAATGTTGGCTG+AGG | + | chr2.3:73268518-73268537 | MS.gene002251:CDS | 40.0% |
| !! | AACTCAGTTGGTAGCTATCA+GGG | + | chr2.3:73271096-73271115 | MS.gene002251:intron | 40.0% |
| !! | GTAAGGAGTTGATGAATCCA+AGG | - | chr2.3:73268663-73268682 | None:intergenic | 40.0% |
| !! | TAACTCAGTTGGTAGCTATC+AGG | + | chr2.3:73271095-73271114 | MS.gene002251:intron | 40.0% |
| !!! | TTTTCAAGTAGGCAAATGGG+GGG | + | chr2.3:73270506-73270525 | MS.gene002251:intron | 40.0% |
| AAGGTGACACATGAGAAAGC+AGG | + | chr2.3:73270437-73270456 | MS.gene002251:intron | 45.0% | |
| AATCACATGTTGGGCATCCA+AGG | + | chr2.3:73271672-73271691 | MS.gene002251:CDS | 45.0% | |
| AGGTGACACATGAGAAAGCA+GGG | + | chr2.3:73270438-73270457 | MS.gene002251:intron | 45.0% | |
| ATTACGAGATCCAGACACAG+AGG | + | chr2.3:73272327-73272346 | MS.gene002251:CDS | 45.0% | |
| CAGATTCTGATCCCATTCCA+TGG | - | chr2.3:73272002-73272021 | None:intergenic | 45.0% | |
| CATCACAAAGCAAGGGGATA+AGG | - | chr2.3:73272124-73272143 | None:intergenic | 45.0% | |
| CATGGAATGGGATCAGAATC+TGG | + | chr2.3:73272000-73272019 | MS.gene002251:intron | 45.0% | |
| CCACAATTAATGAGACGAGG+AGG | - | chr2.3:73270225-73270244 | None:intergenic | 45.0% | |
| CCTCCTCGTCTCATTAATTG+TGG | + | chr2.3:73270222-73270241 | MS.gene002251:intron | 45.0% | |
| CTGAAGCAGAGGTAATTGGT+TGG | + | chr2.3:73271613-73271632 | MS.gene002251:CDS | 45.0% | |
| GGCATACATCACAAAGCAAG+GGG | - | chr2.3:73272130-73272149 | None:intergenic | 45.0% | |
| GTAGATAATTGGGCGTGCAT+TGG | + | chr2.3:73271371-73271390 | MS.gene002251:intron | 45.0% | |
| TGTTGAATTCAGGATGGCCT+TGG | - | chr2.3:73271692-73271711 | None:intergenic | 45.0% | |
| TTCACTCTTCAAATGCCACC+GGG | + | chr2.3:73271488-73271507 | MS.gene002251:CDS | 45.0% | |
| !!! | AAGTTAAATTTTAATAATTA+AGG | + | chr2.3:73270360-73270379 | MS.gene002251:intron | 5.0% |
| AGATTTGCCTGCTGAAGCAG+AGG | + | chr2.3:73271602-73271621 | MS.gene002251:CDS | 50.0% | |
| AGGGATTGCGGTTCGAACAT+CGG | + | chr2.3:73271130-73271149 | MS.gene002251:intron | 50.0% | |
| ATAATTGGGCGTGCATTGGG+AGG | + | chr2.3:73271375-73271394 | MS.gene002251:CDS | 50.0% | |
| ATGCACATGCCAATGACCCT+TGG | + | chr2.3:73268643-73268662 | MS.gene002251:CDS | 50.0% | |
| CCAATTACCTCTGCTTCAGC+AGG | - | chr2.3:73271612-73271631 | None:intergenic | 50.0% | |
| CCTGCTGAAGCAGAGGTAAT+TGG | + | chr2.3:73271609-73271628 | MS.gene002251:CDS | 50.0% | |
| GGCTGAGGAAGGAGAAACAT+GGG | + | chr2.3:73268533-73268552 | MS.gene002251:CDS | 50.0% | |
| GTGACTCATTGTACTGCACG+TGG | - | chr2.3:73272048-73272067 | None:intergenic | 50.0% | |
| TAATTGGGCGTGCATTGGGA+GGG | + | chr2.3:73271376-73271395 | MS.gene002251:CDS | 50.0% | |
| TGCCTAAACACTACACCCTC+CGG | + | chr2.3:73269665-73269684 | MS.gene002251:intron | 50.0% | |
| TGGCTGAGGAAGGAGAAACA+TGG | + | chr2.3:73268532-73268551 | MS.gene002251:CDS | 50.0% | |
| ! | ATGTCACTTGATGGGACGGA+GGG | - | chr2.3:73269457-73269476 | None:intergenic | 50.0% |
| ! | GTTTTCCATGCCTCTGTGTC+TGG | - | chr2.3:73272340-73272359 | None:intergenic | 50.0% |
| AAAGTGGTGCGTTCTGGTGC+AGG | + | chr2.3:73271399-73271418 | MS.gene002251:CDS | 55.0% | |
| CTTCAAATGCCACCGGGATG+AGG | + | chr2.3:73271494-73271513 | MS.gene002251:CDS | 55.0% | |
| GAGATCCAGACACAGAGGCA+TGG | + | chr2.3:73272332-73272351 | MS.gene002251:CDS | 55.0% | |
| GGTGGCCAAAGCAAATGCCA+AGG | - | chr2.3:73268722-73268741 | None:intergenic | 55.0% | |
| TGGCATTTGCTTTGGCCACC+AGG | + | chr2.3:73268722-73268741 | MS.gene002251:CDS | 55.0% | |
| ! | CATGTCACTTGATGGGACGG+AGG | - | chr2.3:73269458-73269477 | None:intergenic | 55.0% |
| ! | GACCGGAGGGTGTAGTGTTT+AGG | - | chr2.3:73269670-73269689 | None:intergenic | 55.0% |
| ! | TCTGGTGCAGGTTGGGACAT+AGG | + | chr2.3:73271411-73271430 | MS.gene002251:CDS | 55.0% |
| GCGTGCATTGGGAGGGAAAG+TGG | + | chr2.3:73271383-73271402 | MS.gene002251:CDS | 60.0% | |
| GGAGGGAAAGTGGTGCGTTC+TGG | + | chr2.3:73271393-73271412 | MS.gene002251:CDS | 60.0% | |
| GGTGCGTTCTGGTGCAGGTT+GGG | + | chr2.3:73271404-73271423 | MS.gene002251:CDS | 60.0% | |
| TGGTGCGTTCTGGTGCAGGT+TGG | + | chr2.3:73271403-73271422 | MS.gene002251:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 73268423 | 73272393 | 73268423 | ID=MS.gene002251 |
| chr2.3 | mRNA | 73268423 | 73272393 | 73268423 | ID=MS.gene002251.t1;Parent=MS.gene002251 |
| chr2.3 | exon | 73268423 | 73268743 | 73268423 | ID=MS.gene002251.t1.exon1;Parent=MS.gene002251.t1 |
| chr2.3 | CDS | 73268423 | 73268743 | 73268423 | ID=cds.MS.gene002251.t1;Parent=MS.gene002251.t1 |
| chr2.3 | exon | 73271375 | 73271515 | 73271375 | ID=MS.gene002251.t1.exon2;Parent=MS.gene002251.t1 |
| chr2.3 | CDS | 73271375 | 73271515 | 73271375 | ID=cds.MS.gene002251.t1;Parent=MS.gene002251.t1 |
| chr2.3 | exon | 73271597 | 73271764 | 73271597 | ID=MS.gene002251.t1.exon3;Parent=MS.gene002251.t1 |
| chr2.3 | CDS | 73271597 | 73271764 | 73271597 | ID=cds.MS.gene002251.t1;Parent=MS.gene002251.t1 |
| chr2.3 | exon | 73272292 | 73272393 | 73272292 | ID=MS.gene002251.t1.exon4;Parent=MS.gene002251.t1 |
| chr2.3 | CDS | 73272292 | 73272393 | 73272292 | ID=cds.MS.gene002251.t1;Parent=MS.gene002251.t1 |
| Gene Sequence |
| Protein sequence |
