Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76089.t1 | XP_003616688.1 | 95.8 | 212 | 9 | 0 | 1 | 212 | 1 | 212 | 7.90E-117 | 429.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76089.t1 | O82225 | 51.5 | 204 | 95 | 1 | 7 | 206 | 6 | 209 | 4.9e-59 | 229.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76089.t1 | G7K286 | 95.8 | 212 | 9 | 0 | 1 | 212 | 1 | 212 | 5.7e-117 | 429.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene76089 | MS.gene068013 | PPI |
MS.gene76089 | MS.gene028495 | PPI |
MS.gene76089 | MS.gene01224 | PPI |
MS.gene76089 | MS.gene002251 | PPI |
MS.gene76089 | MS.gene90232 | PPI |
MS.gene76089 | MS.gene053590 | PPI |
MS.gene76089 | MS.gene02208 | PPI |
MS.gene76089 | MS.gene071221 | PPI |
MS.gene76089 | MS.gene94216 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76089.t1 | MTR_5g083210 | 95.755 | 212 | 9 | 0 | 1 | 212 | 1 | 212 | 9.11e-153 | 424 |
MS.gene76089.t1 | MTR_4g093250 | 75.349 | 215 | 49 | 2 | 1 | 211 | 1 | 215 | 1.99e-107 | 310 |
MS.gene76089.t1 | MTR_2g009720 | 59.174 | 218 | 88 | 1 | 1 | 218 | 2 | 218 | 3.00e-88 | 261 |
MS.gene76089.t1 | MTR_2g009720 | 59.434 | 212 | 85 | 1 | 1 | 212 | 2 | 212 | 3.50e-87 | 258 |
MS.gene76089.t1 | MTR_5g078650 | 69.231 | 52 | 16 | 0 | 38 | 89 | 49 | 100 | 7.63e-16 | 71.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76089.t1 | AT2G23970 | 51.220 | 205 | 96 | 1 | 7 | 207 | 6 | 210 | 1.49e-74 | 227 |
MS.gene76089.t1 | AT4G30550 | 45.972 | 211 | 109 | 1 | 7 | 212 | 8 | 218 | 8.69e-68 | 209 |
MS.gene76089.t1 | AT4G30540 | 48.558 | 208 | 105 | 1 | 7 | 212 | 6 | 213 | 1.23e-67 | 209 |
MS.gene76089.t1 | AT4G30530 | 42.857 | 210 | 116 | 1 | 7 | 212 | 5 | 214 | 1.11e-61 | 194 |
MS.gene76089.t1 | AT2G23960 | 44.076 | 211 | 114 | 1 | 7 | 213 | 5 | 215 | 2.27e-61 | 192 |
MS.gene76089.t1 | AT2G23960 | 43.119 | 218 | 115 | 2 | 7 | 215 | 5 | 222 | 5.23e-61 | 192 |
Find 54 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGATGCATGGAGGGTATTT+TGG | 0.139894 | 5.2:-71229381 | MS.gene76089:CDS |
TAAATATGGAGATCATATTT+TGG | 0.165205 | 5.2:-71225538 | MS.gene76089:CDS |
AAAATCCTTGGCATTTGTTT+TGG | 0.269092 | 5.2:-71229159 | MS.gene76089:CDS |
GGAATTGAGATGTTTAAATA+TGG | 0.288117 | 5.2:-71225552 | MS.gene76089:CDS |
TTGCAAGGCTGAATCGCTTT+TGG | 0.333856 | 5.2:+71224566 | None:intergenic |
AAAATGAGTTGTAAGAGATT+TGG | 0.377337 | 5.2:-71229441 | MS.gene76089:CDS |
TCGATTATAGAAAGCTTTGT+TGG | 0.391349 | 5.2:+71225751 | None:intergenic |
GGTAGTTGCAATGATGCTTA+TGG | 0.400890 | 5.2:-71229243 | MS.gene76089:CDS |
AAGGTACTTGGCCGTGCATT+GGG | 0.412227 | 5.2:-71225865 | MS.gene76089:CDS |
ATGCTTATGGAAATGAGAAA+TGG | 0.439165 | 5.2:-71229230 | MS.gene76089:CDS |
TGGGGTATTCTTGAAAATGT+TGG | 0.442512 | 5.2:-71229361 | MS.gene76089:CDS |
CCGTGCATTGGGAGGAAAGG+TGG | 0.444436 | 5.2:-71225854 | MS.gene76089:CDS |
TTTGGGAATTCAAGGTCATC+CGG | 0.454621 | 5.2:-71225520 | MS.gene76089:CDS |
TCTCCTACTGGTTGGGACAT+TGG | 0.456529 | 5.2:-71225826 | MS.gene76089:CDS |
TAAGGTACTTGGCCGTGCAT+TGG | 0.466217 | 5.2:-71225866 | MS.gene76089:intron |
GGGTCGCTCTCCTACTGGTT+GGG | 0.466637 | 5.2:-71225833 | MS.gene76089:CDS |
AGACTCAACTCATCATCCTT+AGG | 0.471374 | 5.2:+71229288 | None:intergenic |
ATCATGTTTGATAAGGTACT+TGG | 0.487889 | 5.2:-71225877 | MS.gene76089:intron |
GCAATTACCTCTGCCTTAGC+AGG | 0.488420 | 5.2:+71225591 | None:intergenic |
TATGATGGGTTTGTGATCAC+TGG | 0.491412 | 5.2:-71229264 | MS.gene76089:CDS |
TTTCTATAATCGAATGTCAC+AGG | 0.494866 | 5.2:-71225741 | MS.gene76089:CDS |
TGGTGTGTTGTTATGTGCTG+AGG | 0.501318 | 5.2:-71229421 | MS.gene76089:CDS |
AAGGTGGGTCGCTCTCCTAC+TGG | 0.509740 | 5.2:-71225838 | MS.gene76089:CDS |
GATGAGTTGAGTCTTTATGA+TGG | 0.518930 | 5.2:-71229279 | MS.gene76089:CDS |
GATACAAGAGTTACCTGCTA+AGG | 0.520008 | 5.2:-71225604 | MS.gene76089:CDS |
TGGGTCGCTCTCCTACTGGT+TGG | 0.526632 | 5.2:-71225834 | MS.gene76089:CDS |
GGTATTCTTGAAAATGTTGG+AGG | 0.537016 | 5.2:-71229358 | MS.gene76089:CDS |
ATGAGTTGAGTCTTTATGAT+GGG | 0.544846 | 5.2:-71229278 | MS.gene76089:CDS |
CGTGCATTGGGAGGAAAGGT+GGG | 0.545529 | 5.2:-71225853 | MS.gene76089:CDS |
CTCCTAGAATCACGTTTGCA+AGG | 0.552540 | 5.2:+71224551 | None:intergenic |
ATTGCTAGGTCAGATAAGAC+TGG | 0.554445 | 5.2:-71225573 | MS.gene76089:CDS |
TTCATGTGGAGAGTTTCCTA+AGG | 0.566836 | 5.2:-71229304 | MS.gene76089:CDS |
AATCGAATGTCACAGGGATG+AGG | 0.572822 | 5.2:-71225734 | MS.gene76089:intron |
GAAGGGAAACAAATATGTGA+TGG | 0.575220 | 5.2:+71225784 | None:intergenic |
CATCCAACGTAATTTCATCA+AGG | 0.575767 | 5.2:-71225457 | MS.gene76089:intron |
CCACCTTTCCTCCCAATGCA+CGG | 0.582342 | 5.2:+71225854 | None:intergenic |
TTTGTTGGAAGATCAAGAGA+AGG | 0.582547 | 5.2:+71225766 | None:intergenic |
AGAATATCTTTAGAGTACTC+CGG | 0.594538 | 5.2:+71225501 | None:intergenic |
TGGCCGTGCATTGGGAGGAA+AGG | 0.597120 | 5.2:-71225857 | MS.gene76089:CDS |
CTAAGGCAGAGGTAATTGCT+AGG | 0.598401 | 5.2:-71225587 | MS.gene76089:CDS |
TTGTTGGAAGATCAAGAGAA+GGG | 0.600896 | 5.2:+71225767 | None:intergenic |
ATACCTTGATGAAATTACGT+TGG | 0.603079 | 5.2:+71225454 | None:intergenic |
ATGTGATAAAGATGCATGGA+GGG | 0.610169 | 5.2:-71229389 | MS.gene76089:CDS |
ATTTCTTAATCAATGTGACA+AGG | 0.618688 | 5.2:+71229199 | None:intergenic |
AGAGTTACCTGCTAAGGCAG+AGG | 0.620834 | 5.2:-71225598 | MS.gene76089:CDS |
TTCTATAATCGAATGTCACA+GGG | 0.622205 | 5.2:-71225740 | MS.gene76089:CDS |
GTACTTGGCCGTGCATTGGG+AGG | 0.623886 | 5.2:-71225862 | MS.gene76089:CDS |
TGGAGGAAGAAAATGAGACA+TGG | 0.626432 | 5.2:-71229341 | MS.gene76089:CDS |
GAGTATGTGATAAAGATGCA+TGG | 0.626622 | 5.2:-71229393 | MS.gene76089:CDS |
GGTGGCCAAAACAAATGCCA+AGG | 0.630316 | 5.2:+71229154 | None:intergenic |
GGAGGAAGAAAATGAGACAT+GGG | 0.638380 | 5.2:-71229340 | MS.gene76089:CDS |
GACATGTACAAAGTTTCATG+TGG | 0.640249 | 5.2:-71229318 | MS.gene76089:CDS |
ACACCAATGTCCCAACCAGT+AGG | 0.651774 | 5.2:+71225823 | None:intergenic |
TATGTGATAAAGATGCATGG+AGG | 0.687190 | 5.2:-71229390 | MS.gene76089:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAATTATTTTTTTTTATTTT+GGG | - | chr5.2:71225617-71225636 | MS.gene76089:intron | 0.0% |
!!! | TTAATTATTTTTTTTTATTT+TGG | - | chr5.2:71225616-71225635 | MS.gene76089:intron | 0.0% |
!! | ATCTATAAAAATACATAAAA+AGG | + | chr5.2:71226334-71226353 | None:intergenic | 10.0% |
!! | GTTAGAAATATTAATTAATT+TGG | - | chr5.2:71226924-71226943 | MS.gene76089:intron | 10.0% |
!! | TAATATATAATAGTAATTGA+TGG | - | chr5.2:71228352-71228371 | MS.gene76089:intron | 10.0% |
!!! | AGAATATATGTTTTTTATTT+GGG | + | chr5.2:71225967-71225986 | None:intergenic | 10.0% |
!!! | TAGAATATATGTTTTTTATT+TGG | + | chr5.2:71225968-71225987 | None:intergenic | 10.0% |
!! | AAAAATAATTAAGTAGGAAA+AGG | + | chr5.2:71225608-71225627 | None:intergenic | 15.0% |
!! | AAAATAATTAAGTAGGAAAA+GGG | + | chr5.2:71225607-71225626 | None:intergenic | 15.0% |
!! | AAATTTAAGAATACTGTTTA+TGG | + | chr5.2:71226778-71226797 | None:intergenic | 15.0% |
!! | AATTTAAGAATACTGTTTAT+GGG | + | chr5.2:71226777-71226796 | None:intergenic | 15.0% |
!! | AATTTGATTCATATATATCA+AGG | + | chr5.2:71229110-71229129 | None:intergenic | 15.0% |
!! | ATGAAAATGATTCTTAAATA+GGG | - | chr5.2:71228651-71228670 | MS.gene76089:intron | 15.0% |
!! | CTAAAAATAAAACTAGAAAT+TGG | + | chr5.2:71228581-71228600 | None:intergenic | 15.0% |
!! | GAAATTAAAAATTAATTACC+TGG | + | chr5.2:71224877-71224896 | None:intergenic | 15.0% |
!! | TTCAATTACTATTGAATTTA+AGG | - | chr5.2:71229197-71229216 | MS.gene76089:CDS | 15.0% |
!!! | AAAAATTTTATCGCAAAATA+TGG | + | chr5.2:71226516-71226535 | None:intergenic | 15.0% |
!!! | ATAGTATACTATTTTTTTCA+GGG | + | chr5.2:71226981-71227000 | None:intergenic | 15.0% |
!!! | ATTTCAATTTTCTATTACTT+TGG | - | chr5.2:71228602-71228621 | MS.gene76089:intron | 15.0% |
!!! | ATTTTTTTTCAAATTCTTAG+TGG | - | chr5.2:71225001-71225020 | MS.gene76089:intron | 15.0% |
!!! | GTTAGACTTTTAAAAATAAA+TGG | - | chr5.2:71226631-71226650 | MS.gene76089:intron | 15.0% |
!!! | TATAGTATACTATTTTTTTC+AGG | + | chr5.2:71226982-71227001 | None:intergenic | 15.0% |
!!! | TTCTTTTATTTGTGATTAAA+AGG | + | chr5.2:71227256-71227275 | None:intergenic | 15.0% |
!! | AAAAATAGAAACATTGTCTT+GGG | - | chr5.2:71225825-71225844 | MS.gene76089:CDS | 20.0% |
!! | AAATTAGATGACTAAAACAT+GGG | - | chr5.2:71229014-71229033 | MS.gene76089:intron | 20.0% |
!! | AATTCAGTGTAATTATGTAT+CGG | + | chr5.2:71224976-71224995 | None:intergenic | 20.0% |
!! | ATTAAAAATTAATTACCTGG+TGG | + | chr5.2:71224874-71224893 | None:intergenic | 20.0% |
!! | ATTATGATGAAAAATACTTG+AGG | + | chr5.2:71228336-71228355 | None:intergenic | 20.0% |
!! | ATTGACCATGTAAAATAAAA+AGG | - | chr5.2:71225761-71225780 | MS.gene76089:CDS | 20.0% |
!! | GATCATAATAACAATATTGT+AGG | + | chr5.2:71227229-71227248 | None:intergenic | 20.0% |
!! | GATGAAAATGATTCTTAAAT+AGG | - | chr5.2:71228650-71228669 | MS.gene76089:intron | 20.0% |
!! | TAAAAATAGAAACATTGTCT+TGG | - | chr5.2:71225824-71225843 | MS.gene76089:CDS | 20.0% |
!! | TAAATTAGATGACTAAAACA+TGG | - | chr5.2:71229013-71229032 | MS.gene76089:intron | 20.0% |
!! | TAGTTCACAAAAAATAAAGT+AGG | - | chr5.2:71227608-71227627 | MS.gene76089:intron | 20.0% |
!! | TCATATCAATTAGATTTCTA+TGG | - | chr5.2:71226696-71226715 | MS.gene76089:intron | 20.0% |
!! | TGAAAATGATTCTTAAATAG+GGG | - | chr5.2:71228652-71228671 | MS.gene76089:intron | 20.0% |
!! | TTAATATTTCTCGTTTGATA+AGG | - | chr5.2:71227861-71227880 | MS.gene76089:intron | 20.0% |
!! | TTGACCATGTAAAATAAAAA+GGG | - | chr5.2:71225762-71225781 | MS.gene76089:CDS | 20.0% |
!!! | AAATATGGAGATCATATTTT+GGG | - | chr5.2:71228470-71228489 | MS.gene76089:intron | 20.0% |
!!! | AATTGTTGATTTCATATTTG+AGG | - | chr5.2:71225108-71225127 | MS.gene76089:intron | 20.0% |
!!! | AATTTCAAACGTACTTTTTA+TGG | + | chr5.2:71226731-71226750 | None:intergenic | 20.0% |
!!! | AATTTTATTTAGCACACTAT+TGG | - | chr5.2:71225699-71225718 | MS.gene76089:intron | 20.0% |
!!! | ACTTCATAATGTTTTGTAAA+AGG | + | chr5.2:71228098-71228117 | None:intergenic | 20.0% |
!!! | ATTTCCCTTTTTATTTTACA+TGG | + | chr5.2:71225769-71225788 | None:intergenic | 20.0% |
!!! | CAATGTAAATATACTACTTT+TGG | - | chr5.2:71225902-71225921 | MS.gene76089:intron | 20.0% |
!!! | GAACTCAAAATTTGATTTAT+AGG | - | chr5.2:71226369-71226388 | MS.gene76089:intron | 20.0% |
!!! | TAAATATGGAGATCATATTT+TGG | - | chr5.2:71228469-71228488 | MS.gene76089:intron | 20.0% |
!!! | TATCTACGTTTTTCTTATTT+TGG | + | chr5.2:71227141-71227160 | None:intergenic | 20.0% |
!!! | TATTAAGCACAAACATTTTT+TGG | - | chr5.2:71224897-71224916 | MS.gene76089:intron | 20.0% |
!!! | TTGAATTAAGTTTAGTTTCA+CGG | + | chr5.2:71228042-71228061 | None:intergenic | 20.0% |
! | AAAATGAGTTGTAAGAGATT+TGG | - | chr5.2:71224566-71224585 | MS.gene76089:CDS | 25.0% |
! | AAAGAAACACTAGAACTAAA+TGG | - | chr5.2:71227973-71227992 | MS.gene76089:intron | 25.0% |
! | ACTACAAAATTTCATTGTGA+AGG | - | chr5.2:71226153-71226172 | MS.gene76089:intron | 25.0% |
! | AGTTATGAAATTGAATGCAA+TGG | + | chr5.2:71225189-71225208 | None:intergenic | 25.0% |
! | ATTAGAGATTATAGAAAGCA+TGG | - | chr5.2:71225502-71225521 | MS.gene76089:CDS | 25.0% |
! | ATTTCTTAATCAATGTGACA+AGG | + | chr5.2:71224811-71224830 | None:intergenic | 25.0% |
! | CAGTAAAAACATTCTTCAAA+AGG | + | chr5.2:71227288-71227307 | None:intergenic | 25.0% |
! | CTTAGATCAAAATTGACAAA+TGG | - | chr5.2:71225150-71225169 | MS.gene76089:intron | 25.0% |
! | GAAAATGATTCTTAAATAGG+GGG | - | chr5.2:71228653-71228672 | MS.gene76089:intron | 25.0% |
! | GGAATTGAGATGTTTAAATA+TGG | - | chr5.2:71228455-71228474 | MS.gene76089:intron | 25.0% |
! | GTGTTAAGAACGTTAAAATA+TGG | + | chr5.2:71226492-71226511 | None:intergenic | 25.0% |
! | TCATATATATCAAGGAGTTA+AGG | + | chr5.2:71229102-71229121 | None:intergenic | 25.0% |
! | TCGATCTATAAGAAAAAGAT+GGG | + | chr5.2:71225376-71225395 | None:intergenic | 25.0% |
! | TTAAAATGTCTCACATGATT+GGG | + | chr5.2:71226669-71226688 | None:intergenic | 25.0% |
! | TTATACTACGCGTATATTAT+AGG | + | chr5.2:71226025-71226044 | None:intergenic | 25.0% |
! | TTCGATCTATAAGAAAAAGA+TGG | + | chr5.2:71225377-71225396 | None:intergenic | 25.0% |
! | TTGAATACTGTCTAAACATA+TGG | + | chr5.2:71227201-71227220 | None:intergenic | 25.0% |
!! | GACGTTTTTATAAAGAAGTT+AGG | + | chr5.2:71227106-71227125 | None:intergenic | 25.0% |
!! | GGTTAATTTCCTTTTTCTTT+TGG | - | chr5.2:71225081-71225100 | MS.gene76089:intron | 25.0% |
!! | TCTGACTTGACATTATATAT+GGG | - | chr5.2:71227058-71227077 | MS.gene76089:intron | 25.0% |
!! | TCTTTTTCTTATAGATCGAA+AGG | - | chr5.2:71225377-71225396 | MS.gene76089:intron | 25.0% |
!! | TGATTTGAGATCAAACAATT+TGG | - | chr5.2:71228726-71228745 | MS.gene76089:intron | 25.0% |
!! | TTAGAGATTATAGAAAGCAT+GGG | - | chr5.2:71225503-71225522 | MS.gene76089:CDS | 25.0% |
!! | TTCTGACTTGACATTATATA+TGG | - | chr5.2:71227057-71227076 | MS.gene76089:intron | 25.0% |
!!! | CTTTTGAAGAATGTTTTTAC+TGG | - | chr5.2:71227286-71227305 | MS.gene76089:intron | 25.0% |
!!! | TATGACTACTTTTATGTGTA+TGG | - | chr5.2:71227443-71227462 | MS.gene76089:intron | 25.0% |
!!! | TTCATCTCTCTTATTTTGAA+TGG | - | chr5.2:71225726-71225745 | MS.gene76089:intron | 25.0% |
!!! | TTTCAATTTTCAAGTGTGTT+TGG | - | chr5.2:71229409-71229428 | MS.gene76089:CDS | 25.0% |
ACATAAACCTACAACTCTAA+GGG | + | chr5.2:71228687-71228706 | None:intergenic | 30.0% | |
ACTAAGCATCATGTTTGATA+AGG | - | chr5.2:71228123-71228142 | MS.gene76089:intron | 30.0% | |
ACTTGTAACTTCTTATAGCA+AGG | - | chr5.2:71228801-71228820 | MS.gene76089:intron | 30.0% | |
ATATAAATCGACAGAAGAGA+TGG | + | chr5.2:71228774-71228793 | None:intergenic | 30.0% | |
ATCAAATCCACCTTATGTTT+GGG | - | chr5.2:71229141-71229160 | MS.gene76089:intron | 30.0% | |
ATGAAAAATACTTGAGGCTT+TGG | + | chr5.2:71228330-71228349 | None:intergenic | 30.0% | |
ATGCTTATGGAAATGAGAAA+TGG | - | chr5.2:71224777-71224796 | MS.gene76089:intron | 30.0% | |
ATGTACACACCACATATTAT+TGG | + | chr5.2:71227366-71227385 | None:intergenic | 30.0% | |
CAAATCCCAATTCTTTATGA+TGG | + | chr5.2:71228630-71228649 | None:intergenic | 30.0% | |
CAATTGAGTCCAAAAGAAAA+AGG | + | chr5.2:71225093-71225112 | None:intergenic | 30.0% | |
CATCATAAAGAATTGGGATT+TGG | - | chr5.2:71228628-71228647 | MS.gene76089:intron | 30.0% | |
GAAATGTGTGAAGAAATGTA+AGG | - | chr5.2:71225241-71225260 | MS.gene76089:intron | 30.0% | |
GTTAAAATGTCTCACATGAT+TGG | + | chr5.2:71226670-71226689 | None:intergenic | 30.0% | |
TAAGAGACAAACAATTTGAG+AGG | + | chr5.2:71227907-71227926 | None:intergenic | 30.0% | |
TACATAAACCTACAACTCTA+AGG | + | chr5.2:71228688-71228707 | None:intergenic | 30.0% | |
TACATTGTATATGACCTTTG+CGG | - | chr5.2:71229282-71229301 | MS.gene76089:CDS | 30.0% | |
TCATTAAATTGCCATGATTG+AGG | + | chr5.2:71228001-71228020 | None:intergenic | 30.0% | |
TGGAACCATCATAAAGAATT+GGG | - | chr5.2:71228622-71228641 | MS.gene76089:intron | 30.0% | |
TGTTTGTATTTGTGCTTCAT+AGG | - | chr5.2:71225060-71225079 | MS.gene76089:intron | 30.0% | |
TTATAGATCGAAAGGACTAT+TGG | - | chr5.2:71225385-71225404 | MS.gene76089:intron | 30.0% | |
TTCTATAATCGAATGTCACA+GGG | - | chr5.2:71228267-71228286 | MS.gene76089:intron | 30.0% | |
TTGACAAATGGTTTATGACT+TGG | - | chr5.2:71225162-71225181 | MS.gene76089:intron | 30.0% | |
TTGGAACCATCATAAAGAAT+TGG | - | chr5.2:71228621-71228640 | MS.gene76089:intron | 30.0% | |
TTTAACGTGCTAAACATGTA+TGG | + | chr5.2:71226086-71226105 | None:intergenic | 30.0% | |
TTTCTATAATCGAATGTCAC+AGG | - | chr5.2:71228266-71228285 | MS.gene76089:intron | 30.0% | |
! | AAAATCCTTGGCATTTGTTT+TGG | - | chr5.2:71224848-71224867 | MS.gene76089:intron | 30.0% |
! | ATCATGTTTGATAAGGTACT+TGG | - | chr5.2:71228130-71228149 | MS.gene76089:intron | 30.0% |
! | ATGAGTTGAGTCTTTATGAT+GGG | - | chr5.2:71224729-71224748 | MS.gene76089:intron | 30.0% |
! | CTAGTATTTCTCATTTGCTA+GGG | - | chr5.2:71227794-71227813 | MS.gene76089:intron | 30.0% |
! | TCGATTATAGAAAGCTTTGT+TGG | + | chr5.2:71228259-71228278 | None:intergenic | 30.0% |
! | TTCTAGTGTTTCTTTGTTTG+CGG | + | chr5.2:71227968-71227987 | None:intergenic | 30.0% |
!! | AGAATATCTTTAGAGTACTC+CGG | + | chr5.2:71228509-71228528 | None:intergenic | 30.0% |
!! | ATTTAGTTCCCTAATTTTGC+AGG | + | chr5.2:71226201-71226220 | None:intergenic | 30.0% |
!! | GATCATATTTTGGGAATTCA+AGG | - | chr5.2:71228479-71228498 | MS.gene76089:intron | 30.0% |
AAATGCTCACAAGAAGACAA+AGG | + | chr5.2:71227033-71227052 | None:intergenic | 35.0% | |
ACTAAATGGTTCCTCAATCA+TGG | - | chr5.2:71227987-71228006 | MS.gene76089:intron | 35.0% | |
AGAAACATTGTCTTGGGAAA+TGG | - | chr5.2:71225831-71225850 | MS.gene76089:CDS | 35.0% | |
ATCTTCTATGCCTATGTAGT+TGG | - | chr5.2:71229316-71229335 | MS.gene76089:CDS | 35.0% | |
ATGTGATAAAGATGCATGGA+GGG | - | chr5.2:71224618-71224637 | MS.gene76089:CDS | 35.0% | |
CCAGAAAAATTATAGAGCCT+GGG | + | chr5.2:71226540-71226559 | None:intergenic | 35.0% | |
GAAGGGAAACAAATATGTGA+TGG | + | chr5.2:71228226-71228245 | None:intergenic | 35.0% | |
GAATGTGGTCCAATAATATG+TGG | - | chr5.2:71227354-71227373 | MS.gene76089:intron | 35.0% | |
GACATGTACAAAGTTTCATG+TGG | - | chr5.2:71224689-71224708 | MS.gene76089:intron | 35.0% | |
GAGTATGTGATAAAGATGCA+TGG | - | chr5.2:71224614-71224633 | MS.gene76089:CDS | 35.0% | |
GATCAAATCCACCTTATGTT+TGG | - | chr5.2:71229140-71229159 | MS.gene76089:intron | 35.0% | |
GCTAGTATTTCTCATTTGCT+AGG | - | chr5.2:71227793-71227812 | MS.gene76089:intron | 35.0% | |
GGTATTCTTGAAAATGTTGG+AGG | - | chr5.2:71224649-71224668 | MS.gene76089:intron | 35.0% | |
GTGAAGAAATGTAAGGCTTT+AGG | - | chr5.2:71225248-71225267 | MS.gene76089:intron | 35.0% | |
TAAGTAGGAAAAGGGCTATT+GGG | + | chr5.2:71225599-71225618 | None:intergenic | 35.0% | |
TACATTCACGTGAATCACTT+AGG | - | chr5.2:71227381-71227400 | MS.gene76089:intron | 35.0% | |
TAGTCATGCCTGCAAAATTA+GGG | - | chr5.2:71226190-71226209 | MS.gene76089:intron | 35.0% | |
TATGTGATAAAGATGCATGG+AGG | - | chr5.2:71224617-71224636 | MS.gene76089:CDS | 35.0% | |
TCTTCTATGCCTATGTAGTT+GGG | - | chr5.2:71229317-71229336 | MS.gene76089:CDS | 35.0% | |
TTAAGTAGGAAAAGGGCTAT+TGG | + | chr5.2:71225600-71225619 | None:intergenic | 35.0% | |
TTATTTAGCACACTATTGGC+AGG | - | chr5.2:71225703-71225722 | MS.gene76089:intron | 35.0% | |
TTGTTGGAAGATCAAGAGAA+GGG | + | chr5.2:71228243-71228262 | None:intergenic | 35.0% | |
TTTGCTAGGGTTTGAATTCA+AGG | - | chr5.2:71227807-71227826 | MS.gene76089:intron | 35.0% | |
TTTGTTGGAAGATCAAGAGA+AGG | + | chr5.2:71228244-71228263 | None:intergenic | 35.0% | |
! | GATGAGTTGAGTCTTTATGA+TGG | - | chr5.2:71224728-71224747 | MS.gene76089:intron | 35.0% |
! | TGGGGTATTCTTGAAAATGT+TGG | - | chr5.2:71224646-71224665 | MS.gene76089:intron | 35.0% |
! | TTAGAGTCACTTTCTATCAG+TGG | + | chr5.2:71226568-71226587 | None:intergenic | 35.0% |
! | TTGCGATAAAATTTTTGCCC+AGG | - | chr5.2:71226520-71226539 | MS.gene76089:intron | 35.0% |
! | TTTTGGACAAAATATCCCCA+TGG | + | chr5.2:71225447-71225466 | None:intergenic | 35.0% |
!! | AAATGCTAAAGAGTGTCCTT+AGG | - | chr5.2:71225785-71225804 | MS.gene76089:CDS | 35.0% |
!! | AATGCTAAAGAGTGTCCTTA+GGG | - | chr5.2:71225786-71225805 | MS.gene76089:CDS | 35.0% |
!! | ATTATGTATCGGTGTTGTGT+TGG | + | chr5.2:71224965-71224984 | None:intergenic | 35.0% |
!!! | TACGTGGACATGAGTTTTTT+TGG | + | chr5.2:71225464-71225483 | None:intergenic | 35.0% |
ACTTAGTGTCCCAACTACAT+AGG | + | chr5.2:71229329-71229348 | None:intergenic | 40.0% | |
AGACTCAACTCATCATCCTT+AGG | + | chr5.2:71224722-71224741 | None:intergenic | 40.0% | |
ATGTATGCGCACACAAACAA+TGG | + | chr5.2:71225274-71225293 | None:intergenic | 40.0% | |
ATGTTTGGCCTAGTTAGACA+AGG | - | chr5.2:71227485-71227504 | MS.gene76089:intron | 40.0% | |
ATTGCTAGGTCAGATAAGAC+TGG | - | chr5.2:71228434-71228453 | MS.gene76089:intron | 40.0% | |
CACATATCCCTTAGAGTTGT+AGG | - | chr5.2:71228677-71228696 | MS.gene76089:intron | 40.0% | |
CATGTGAGTATACTCTTGCT+CGG | - | chr5.2:71226225-71226244 | MS.gene76089:intron | 40.0% | |
CTAGTCATGCCTGCAAAATT+AGG | - | chr5.2:71226189-71226208 | MS.gene76089:intron | 40.0% | |
GATACAAGAGTTACCTGCTA+AGG | - | chr5.2:71228403-71228422 | MS.gene76089:intron | 40.0% | |
GCCAGAAAAATTATAGAGCC+TGG | + | chr5.2:71226541-71226560 | None:intergenic | 40.0% | |
GCTTGAAACGTAAAACCCTA+AGG | + | chr5.2:71227528-71227547 | None:intergenic | 40.0% | |
GGAGGAAGAAAATGAGACAT+GGG | - | chr5.2:71224667-71224686 | MS.gene76089:intron | 40.0% | |
GGTAGTTGCAATGATGCTTA+TGG | - | chr5.2:71224764-71224783 | MS.gene76089:intron | 40.0% | |
GTCCACGTAGAATATAGACA+GGG | - | chr5.2:71225475-71225494 | MS.gene76089:CDS | 40.0% | |
GTTTCCATGATTGAAGCCAT+GGG | - | chr5.2:71225428-71225447 | MS.gene76089:intron | 40.0% | |
TAGGCCAAACATTATCCCAA+AGG | + | chr5.2:71227477-71227496 | None:intergenic | 40.0% | |
TAGTTAGACAAGGTCAGTGT+GGG | - | chr5.2:71227495-71227514 | MS.gene76089:intron | 40.0% | |
TATAGTAAGCCACTAGGAAG+TGG | + | chr5.2:71228830-71228849 | None:intergenic | 40.0% | |
TCATGCTATAGTAAGCCACT+AGG | + | chr5.2:71228836-71228855 | None:intergenic | 40.0% | |
TCCATGCAGACAAAAATCCT+TGG | - | chr5.2:71224836-71224855 | MS.gene76089:intron | 40.0% | |
TCGTATCTACGTTTCTGTGT+AGG | + | chr5.2:71229172-71229191 | None:intergenic | 40.0% | |
TCTTCTTAACCAATGCCCTA+AGG | + | chr5.2:71225804-71225823 | None:intergenic | 40.0% | |
TGGAGGAAGAAAATGAGACA+TGG | - | chr5.2:71224666-71224685 | MS.gene76089:intron | 40.0% | |
TGTCCACGTAGAATATAGAC+AGG | - | chr5.2:71225474-71225493 | MS.gene76089:CDS | 40.0% | |
TGTTTCCATGATTGAAGCCA+TGG | - | chr5.2:71225427-71225446 | MS.gene76089:intron | 40.0% | |
TTCATGTGGAGAGTTTCCTA+AGG | - | chr5.2:71224703-71224722 | MS.gene76089:intron | 40.0% | |
TTCCTTAACCATTGCCCTAA+GGG | - | chr5.2:71225926-71225945 | MS.gene76089:intron | 40.0% | |
TTTCCATGATTGAAGCCATG+GGG | - | chr5.2:71225429-71225448 | MS.gene76089:intron | 40.0% | |
TTTCCTTAACCATTGCCCTA+AGG | - | chr5.2:71225925-71225944 | MS.gene76089:intron | 40.0% | |
TTTGGGAATTCAAGGTCATC+CGG | - | chr5.2:71228487-71228506 | MS.gene76089:intron | 40.0% | |
! | AGTGTTTCTTTGTTTGCGGT+AGG | + | chr5.2:71227964-71227983 | None:intergenic | 40.0% |
! | CCCAGGCTCTATAATTTTTC+TGG | - | chr5.2:71226537-71226556 | MS.gene76089:intron | 40.0% |
! | GAGATTATAGAAAGCATGGG+CGG | - | chr5.2:71225506-71225525 | MS.gene76089:CDS | 40.0% |
! | TTCTTTGTTTGCGGTAGGTA+GGG | + | chr5.2:71227959-71227978 | None:intergenic | 40.0% |
! | TTTCTTTGTTTGCGGTAGGT+AGG | + | chr5.2:71227960-71227979 | None:intergenic | 40.0% |
!! | GCTACCTTTGGGATAATGTT+TGG | - | chr5.2:71227470-71227489 | MS.gene76089:intron | 40.0% |
!! | TATGATGGGTTTGTGATCAC+TGG | - | chr5.2:71224743-71224762 | MS.gene76089:intron | 40.0% |
!! | TGTATGGACTTGCTACCTTT+GGG | - | chr5.2:71227459-71227478 | MS.gene76089:intron | 40.0% |
!!! | AAGATGCATGGAGGGTATTT+TGG | - | chr5.2:71224626-71224645 | MS.gene76089:intron | 40.0% |
!!! | AGATGCATGGAGGGTATTTT+GGG | - | chr5.2:71224627-71224646 | MS.gene76089:intron | 40.0% |
AATCGAATGTCACAGGGATG+AGG | - | chr5.2:71228273-71228292 | MS.gene76089:intron | 45.0% | |
AGTTAGACAAGGTCAGTGTG+GGG | - | chr5.2:71227496-71227515 | MS.gene76089:intron | 45.0% | |
CACACTGACCTTGTCTAACT+AGG | + | chr5.2:71227496-71227515 | None:intergenic | 45.0% | |
CTAAGGCAGAGGTAATTGCT+AGG | - | chr5.2:71228420-71228439 | MS.gene76089:intron | 45.0% | |
CTAGTTAGACAAGGTCAGTG+TGG | - | chr5.2:71227494-71227513 | MS.gene76089:intron | 45.0% | |
CTATGCATGTCTCCAGTGAT+AGG | - | chr5.2:71224921-71224940 | MS.gene76089:intron | 45.0% | |
GACCACATTCAAGCTAAGTG+AGG | + | chr5.2:71227344-71227363 | None:intergenic | 45.0% | |
GACCCTGTCTATATTCTACG+TGG | + | chr5.2:71225480-71225499 | None:intergenic | 45.0% | |
GGTAGGTAGGGTAGTTCAAT+TGG | + | chr5.2:71227947-71227966 | None:intergenic | 45.0% | |
TATCCCCATGGCTTCAATCA+TGG | + | chr5.2:71225435-71225454 | None:intergenic | 45.0% | |
! | AGGTTTCAGAGCTTTTGTCG+TGG | - | chr5.2:71229384-71229403 | MS.gene76089:CDS | 45.0% |
! | ATTATAGAAAGCATGGGCGG+TGG | - | chr5.2:71225509-71225528 | MS.gene76089:CDS | 45.0% |
! | GAGTCACTTTCTATCAGTGG+CGG | + | chr5.2:71226565-71226584 | None:intergenic | 45.0% |
! | GCCAAGGATTTTTGTCTGCA+TGG | + | chr5.2:71224840-71224859 | None:intergenic | 45.0% |
! | TGCCTCACTTAGCTTGAATG+TGG | - | chr5.2:71227339-71227358 | MS.gene76089:intron | 45.0% |
! | TGGTGTGTTGTTATGTGCTG+AGG | - | chr5.2:71224586-71224605 | MS.gene76089:CDS | 45.0% |
! | TTGCAAGGCTGAATCGCTTT+TGG | + | chr5.2:71229444-71229463 | None:intergenic | 45.0% |
!! | AAAGAGTGTCCTTAGGGCAT+TGG | - | chr5.2:71225792-71225811 | MS.gene76089:CDS | 45.0% |
!! | GTAGGACTAGCCCAAACATA+AGG | + | chr5.2:71229154-71229173 | None:intergenic | 45.0% |
!! | GTGTATGGACTTGCTACCTT+TGG | - | chr5.2:71227458-71227477 | MS.gene76089:intron | 45.0% |
!! | TATCGGTGTTGTGTTGGTGT+CGG | + | chr5.2:71224959-71224978 | None:intergenic | 45.0% |
!!! | GATGCATGGAGGGTATTTTG+GGG | - | chr5.2:71224628-71224647 | MS.gene76089:intron | 45.0% |
!! | ATAAAAAAAAATAATTAAGT+AGG | + | chr5.2:71225614-71225633 | None:intergenic | 5.0% |
ACACCAATGTCCCAACCAGT+AGG | + | chr5.2:71228187-71228206 | None:intergenic | 50.0% | |
AGAGTTACCTGCTAAGGCAG+AGG | - | chr5.2:71228409-71228428 | MS.gene76089:intron | 50.0% | |
CTTGCTAACCAGTGCCCTTA+GGG | + | chr5.2:71225943-71225962 | None:intergenic | 50.0% | |
GATCACATGTGATGCCGCAA+AGG | + | chr5.2:71229299-71229318 | None:intergenic | 50.0% | |
GCAATTACCTCTGCCTTAGC+AGG | + | chr5.2:71228419-71228438 | None:intergenic | 50.0% | |
GGTGGCCAAAACAAATGCCA+AGG | + | chr5.2:71224856-71224875 | None:intergenic | 50.0% | |
GTAGGAAAAGGGCTATTGGG+CGG | + | chr5.2:71225596-71225615 | None:intergenic | 50.0% | |
TAGGAAAAGGGCTATTGGGC+GGG | + | chr5.2:71225595-71225614 | None:intergenic | 50.0% | |
TCTTGCTAACCAGTGCCCTT+AGG | + | chr5.2:71225944-71225963 | None:intergenic | 50.0% | |
TGCCCTTAGGGCAATGGTTA+AGG | + | chr5.2:71225931-71225950 | None:intergenic | 50.0% | |
TGGGACACTAAGTGCCTGTT+TGG | - | chr5.2:71229336-71229355 | MS.gene76089:CDS | 50.0% | |
! | AAGGTACTTGGCCGTGCATT+GGG | - | chr5.2:71228142-71228161 | MS.gene76089:intron | 50.0% |
! | GCAAGGTATCCACTTCCTAG+TGG | - | chr5.2:71228818-71228837 | MS.gene76089:intron | 50.0% |
! | TAAGGTACTTGGCCGTGCAT+TGG | - | chr5.2:71228141-71228160 | MS.gene76089:intron | 50.0% |
! | TAAGTGCCTGTTTGGTTCCG+CGG | - | chr5.2:71229344-71229363 | MS.gene76089:CDS | 50.0% |
! | TCTCCTACTGGTTGGGACAT+TGG | - | chr5.2:71228181-71228200 | MS.gene76089:intron | 50.0% |
!! | GGACTAGCCCAAACATAAGG+TGG | + | chr5.2:71229151-71229170 | None:intergenic | 50.0% |
!!! | TGGCATTTGTTTTGGCCACC+AGG | - | chr5.2:71224856-71224875 | MS.gene76089:intron | 50.0% |
AACCAGTGCCCTTAGGGCAA+TGG | + | chr5.2:71225937-71225956 | None:intergenic | 55.0% | |
AAGAAAGTAGCAGCCGAGCC+CGG | + | chr5.2:71225562-71225581 | None:intergenic | 55.0% | |
ACACGACACGTGCCTATCAC+TGG | + | chr5.2:71224936-71224955 | None:intergenic | 55.0% | |
AGGAAAAGGGCTATTGGGCG+GGG | + | chr5.2:71225594-71225613 | None:intergenic | 55.0% | |
CCACCTTTCCTCCCAATGCA+CGG | + | chr5.2:71228156-71228175 | None:intergenic | 55.0% | |
CGTGCATTGGGAGGAAAGGT+GGG | - | chr5.2:71228154-71228173 | MS.gene76089:intron | 55.0% | |
! | AACCATTGCCCTAAGGGCAC+TGG | - | chr5.2:71225932-71225951 | MS.gene76089:intron | 55.0% |
AAGGTGGGTCGCTCTCCTAC+TGG | - | chr5.2:71228169-71228188 | MS.gene76089:intron | 60.0% | |
AGAAAGTAGCAGCCGAGCCC+GGG | + | chr5.2:71225561-71225580 | None:intergenic | 60.0% | |
AGTGTGGGGCGCATGCCTTA+GGG | - | chr5.2:71227510-71227529 | MS.gene76089:intron | 60.0% | |
CCGTGCATTGGGAGGAAAGG+TGG | - | chr5.2:71228153-71228172 | MS.gene76089:intron | 60.0% | |
CGGTGGGAACGCTTAAACGC+AGG | - | chr5.2:71229364-71229383 | MS.gene76089:CDS | 60.0% | |
GCGTTTAAGCGTTCCCACCG+CGG | + | chr5.2:71229364-71229383 | None:intergenic | 60.0% | |
GTACTTGGCCGTGCATTGGG+AGG | - | chr5.2:71228145-71228164 | MS.gene76089:intron | 60.0% | |
TGGCCGTGCATTGGGAGGAA+AGG | - | chr5.2:71228150-71228169 | MS.gene76089:intron | 60.0% | |
TGGGTCGCTCTCCTACTGGT+TGG | - | chr5.2:71228173-71228192 | MS.gene76089:intron | 60.0% | |
TTCCCACCGCGGAACCAAAC+AGG | + | chr5.2:71229353-71229372 | None:intergenic | 60.0% | |
! | GGGTCGCTCTCCTACTGGTT+GGG | - | chr5.2:71228174-71228193 | MS.gene76089:intron | 60.0% |
! | TGCCTGTTTGGTTCCGCGGT+GGG | - | chr5.2:71229348-71229367 | MS.gene76089:CDS | 60.0% |
AAGGGCTATTGGGCGGGGCT+TGG | + | chr5.2:71225589-71225608 | None:intergenic | 65.0% | |
CAGTGTGGGGCGCATGCCTT+AGG | - | chr5.2:71227509-71227528 | MS.gene76089:intron | 65.0% | |
! | AGCTAGCCTGGGCACTAGCC+CGG | - | chr5.2:71225540-71225559 | MS.gene76089:CDS | 65.0% |
! | GGCTAGTGCCCAGGCTAGCT+GGG | + | chr5.2:71225540-71225559 | None:intergenic | 65.0% |
! | GTGCCTGTTTGGTTCCGCGG+TGG | - | chr5.2:71229347-71229366 | MS.gene76089:CDS | 65.0% |
! | TAGTGCCCAGGCTAGCTGGG+AGG | + | chr5.2:71225537-71225556 | None:intergenic | 65.0% |
! | TGGCACCTCCCAGCTAGCCT+GGG | - | chr5.2:71225529-71225548 | MS.gene76089:CDS | 65.0% |
GTGGCACCTCCCAGCTAGCC+TGG | - | chr5.2:71225528-71225547 | MS.gene76089:CDS | 70.0% | |
! | GCTAGCCTGGGCACTAGCCC+GGG | - | chr5.2:71225541-71225560 | MS.gene76089:CDS | 70.0% |
! | GGGCTAGTGCCCAGGCTAGC+TGG | + | chr5.2:71225541-71225560 | None:intergenic | 70.0% |
CCTGGGCACTAGCCCGGGCT+CGG | - | chr5.2:71225546-71225565 | MS.gene76089:CDS | 75.0% | |
!!! | CCGAGCCCGGGCTAGTGCCC+AGG | + | chr5.2:71225549-71225568 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 71224560 | 71229469 | 71224560 | ID=MS.gene76089 |
chr5.2 | mRNA | 71224560 | 71229469 | 71224560 | ID=MS.gene76089.t1;Parent=MS.gene76089 |
chr5.2 | exon | 71229152 | 71229469 | 71229152 | ID=MS.gene76089.t1.exon1;Parent=MS.gene76089.t1 |
chr5.2 | CDS | 71229152 | 71229469 | 71229152 | ID=cds.MS.gene76089.t1;Parent=MS.gene76089.t1 |
chr5.2 | exon | 71225735 | 71225884 | 71225735 | ID=MS.gene76089.t1.exon2;Parent=MS.gene76089.t1 |
chr5.2 | CDS | 71225735 | 71225884 | 71225735 | ID=cds.MS.gene76089.t1;Parent=MS.gene76089.t1 |
chr5.2 | exon | 71225458 | 71225625 | 71225458 | ID=MS.gene76089.t1.exon3;Parent=MS.gene76089.t1 |
chr5.2 | CDS | 71225458 | 71225625 | 71225458 | ID=cds.MS.gene76089.t1;Parent=MS.gene76089.t1 |
chr5.2 | exon | 71224560 | 71224643 | 71224560 | ID=MS.gene76089.t1.exon4;Parent=MS.gene76089.t1 |
chr5.2 | CDS | 71224560 | 71224643 | 71224560 | ID=cds.MS.gene76089.t1;Parent=MS.gene76089.t1 |
Gene Sequence |
Protein sequence |