Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068013.t1 | XP_003608377.2 | 97.7 | 264 | 6 | 0 | 1 | 264 | 1 | 264 | 1.20E-150 | 542.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068013.t1 | O82225 | 50.8 | 242 | 117 | 1 | 9 | 248 | 6 | 247 | 1.2e-69 | 264.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068013.t1 | G7JV26 | 97.7 | 264 | 6 | 0 | 1 | 264 | 1 | 264 | 8.7e-151 | 542.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050689 | MS.gene068013 | 0.802111 | 6.55E-49 | -1.69E-46 |
| MS.gene053590 | MS.gene068013 | 0.838559 | 2.68E-57 | -1.69E-46 |
| MS.gene055162 | MS.gene068013 | 0.801669 | 8.07E-49 | -1.69E-46 |
| MS.gene057694 | MS.gene068013 | 0.824367 | 8.39E-54 | -1.69E-46 |
| MS.gene058055 | MS.gene068013 | 0.815929 | 7.19E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76089 | MS.gene068013 | PPI |
| MS.gene068013 | MS.gene01224 | PPI |
| MS.gene068013 | MS.gene028495 | PPI |
| MS.gene068013 | MS.gene002251 | PPI |
| MS.gene068013 | MS.gene90232 | PPI |
| MS.gene068013 | MS.gene02208 | PPI |
| MS.gene071221 | MS.gene068013 | PPI |
| MS.gene068013 | MS.gene053590 | PPI |
| MS.gene94216 | MS.gene068013 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068013.t1 | MTR_4g093250 | 97.727 | 264 | 6 | 0 | 1 | 264 | 1 | 264 | 0.0 | 535 |
| MS.gene068013.t1 | MTR_5g083210 | 72.691 | 249 | 64 | 2 | 1 | 249 | 1 | 245 | 1.78e-134 | 379 |
| MS.gene068013.t1 | MTR_2g009720 | 58.750 | 240 | 96 | 1 | 9 | 248 | 8 | 244 | 8.04e-102 | 296 |
| MS.gene068013.t1 | MTR_2g009720 | 59.903 | 207 | 80 | 1 | 9 | 215 | 8 | 211 | 1.16e-87 | 261 |
| MS.gene068013.t1 | MTR_5g078650 | 58.000 | 50 | 18 | 1 | 42 | 91 | 54 | 100 | 7.98e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068013.t1 | AT2G23970 | 50.202 | 247 | 121 | 1 | 4 | 248 | 1 | 247 | 4.64e-89 | 265 |
| MS.gene068013.t1 | AT4G30550 | 47.107 | 242 | 125 | 1 | 9 | 247 | 8 | 249 | 7.03e-82 | 246 |
| MS.gene068013.t1 | AT4G30540 | 48.750 | 240 | 123 | 0 | 9 | 248 | 6 | 245 | 2.29e-79 | 240 |
| MS.gene068013.t1 | AT2G23960 | 45.417 | 240 | 129 | 1 | 9 | 246 | 5 | 244 | 4.55e-75 | 229 |
| MS.gene068013.t1 | AT4G30530 | 44.628 | 242 | 132 | 1 | 9 | 248 | 5 | 246 | 4.43e-74 | 226 |
| MS.gene068013.t1 | AT2G23960 | 47.549 | 204 | 105 | 1 | 9 | 210 | 5 | 208 | 4.38e-67 | 207 |
Find 78 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATGTACGGAGGGTATTT+TGG | 0.159436 | 4.3:-20978504 | MS.gene068013:CDS |
| GTGGGAGTGGGAAGAGATTT+GGG | 0.222436 | 4.3:-20978563 | MS.gene068013:CDS |
| CTCTTCCATGCCTCCTTATC+TGG | 0.241065 | 4.3:+20976758 | None:intergenic |
| GGTGGGAGTGGGAAGAGATT+TGG | 0.284552 | 4.3:-20978564 | MS.gene068013:CDS |
| TAGATATGGAGATCACATTA+TGG | 0.306527 | 4.3:-20977040 | MS.gene068013:CDS |
| TGGCATTTGCTTTGGTCATC+AGG | 0.316497 | 4.3:-20978274 | MS.gene068013:intron |
| GGAATAGAAAATATAAATAT+TGG | 0.322855 | 4.3:-20976692 | MS.gene068013:CDS |
| TGGAGGAAGAAGGTGAAAAC+TGG | 0.328016 | 4.3:-20978464 | MS.gene068013:CDS |
| TGTTAATTTGATTAGATACT+TGG | 0.341295 | 4.3:-20977420 | MS.gene068013:intron |
| ATCCCTGTGGCATTGAATAA+TGG | 0.342555 | 4.3:+20977275 | None:intergenic |
| TAGATACTTGGCCGTGCAAT+TGG | 0.364461 | 4.3:-20977408 | MS.gene068013:CDS |
| GGAATTGAGATGTTTAGATA+TGG | 0.367188 | 4.3:-20977054 | MS.gene068013:CDS |
| AAAATCCTTGGCATTTGCTT+TGG | 0.382494 | 4.3:-20978282 | MS.gene068013:CDS |
| AGATTCAATTCATCATCCTT+TGG | 0.389173 | 4.3:+20978411 | None:intergenic |
| TGAAAACTGGGATGTGTATA+AGG | 0.406855 | 4.3:-20978451 | MS.gene068013:CDS |
| TCTCCAACTGGCTGGGACAT+TGG | 0.414581 | 4.3:-20977369 | MS.gene068013:CDS |
| AGATATGGAGATCACATTAT+GGG | 0.414653 | 4.3:-20977039 | MS.gene068013:CDS |
| ATGGAGAAAATGGGTGGGAG+TGG | 0.420979 | 4.3:-20978576 | MS.gene068013:CDS |
| GGTCGTTATTGTGAAAGAAA+TGG | 0.428460 | 4.3:-20976713 | MS.gene068013:CDS |
| TGGGAGTGGGAAGAGATTTG+GGG | 0.472039 | 4.3:-20978562 | MS.gene068013:CDS |
| TTTCCATTATTCAATGCCAC+AGG | 0.474211 | 4.3:-20977278 | MS.gene068013:CDS |
| GACATGAACAAGAAAATCCT+TGG | 0.480295 | 4.3:-20978294 | MS.gene068013:CDS |
| TGAAGGAGAAGGCTGGTATG+TGG | 0.491137 | 4.3:-20976784 | MS.gene068013:CDS |
| TGGGGTATTTGTGAGAATGT+TGG | 0.492454 | 4.3:-20978484 | MS.gene068013:CDS |
| TGGAGAAAATGGGTGGGAGT+GGG | 0.495317 | 4.3:-20978575 | MS.gene068013:CDS |
| AAGGTGACTCGATCTCCAAC+TGG | 0.496252 | 4.3:-20977381 | MS.gene068013:CDS |
| TGACTCGATCTCCAACTGGC+TGG | 0.497560 | 4.3:-20977377 | MS.gene068013:CDS |
| GACTCGATCTCCAACTGGCT+GGG | 0.497877 | 4.3:-20977376 | MS.gene068013:CDS |
| GTGAGAATGTTGGAGGAAGA+AGG | 0.500993 | 4.3:-20978474 | MS.gene068013:CDS |
| TGAATAATGGAAAGCCTCGT+TGG | 0.506469 | 4.3:+20977288 | None:intergenic |
| GCAATCACTTCAGCCTTGGC+AGG | 0.507796 | 4.3:+20977093 | None:intergenic |
| TGCTATGAGATTGAAGGAGA+AGG | 0.513622 | 4.3:-20976795 | MS.gene068013:CDS |
| GACAAAGGAGATGGCAAAGA+GGG | 0.513633 | 4.3:+20977324 | None:intergenic |
| AGGGTGATAATGTTATGTTT+CGG | 0.519404 | 4.3:+20977343 | None:intergenic |
| ATACTTGGCCGTGCAATTGG+AGG | 0.519944 | 4.3:-20977405 | MS.gene068013:CDS |
| TGGTATGTGGGAGCCAGATA+AGG | 0.526816 | 4.3:-20976771 | MS.gene068013:CDS |
| ATTGCTAAATCAGATAAGAC+TGG | 0.527568 | 4.3:-20977075 | MS.gene068013:CDS |
| TTTAGCAATCACTTCAGCCT+TGG | 0.530782 | 4.3:+20977089 | None:intergenic |
| TAGAGTACTCAGGATGACCT+TGG | 0.533908 | 4.3:+20977013 | None:intergenic |
| TATTCAATGCCACAGGGATG+AGG | 0.540762 | 4.3:-20977271 | MS.gene068013:intron |
| GATGAATTGAATCTGTATGA+TGG | 0.549776 | 4.3:-20978402 | MS.gene068013:CDS |
| TGAAATTTCGCTGAATAAGA+CGG | 0.555005 | 4.3:+20976965 | None:intergenic |
| ATAGAAAATATAAATATTGG+TGG | 0.558147 | 4.3:-20976689 | MS.gene068013:CDS |
| GCTAAGAGAGCTACCTGCCA+AGG | 0.562053 | 4.3:-20977106 | MS.gene068013:CDS |
| TCAAGAGAAGACAAAGGAGA+TGG | 0.563452 | 4.3:+20977315 | None:intergenic |
| ACTATGCATCAGCTTCCTCA+AGG | 0.566000 | 4.3:-20976735 | MS.gene068013:CDS |
| ACACCAATGTCCCAGCCAGT+TGG | 0.568855 | 4.3:+20977366 | None:intergenic |
| GAAGGAGAAGGCTGGTATGT+GGG | 0.577034 | 4.3:-20976783 | MS.gene068013:CDS |
| GAATATGTGAAGAAAATGTA+CGG | 0.585607 | 4.3:-20978516 | MS.gene068013:CDS |
| TGGCCGTGCAATTGGAGGGA+AGG | 0.591128 | 4.3:-20977400 | MS.gene068013:CDS |
| TACTTGGCCGTGCAATTGGA+GGG | 0.593875 | 4.3:-20977404 | MS.gene068013:CDS |
| GATCACATTATGGGAATCCA+AGG | 0.596532 | 4.3:-20977030 | MS.gene068013:CDS |
| ATGAGATTGAAGGAGAAGGC+TGG | 0.598435 | 4.3:-20976791 | MS.gene068013:CDS |
| ATGTGAAGAAAATGTACGGA+GGG | 0.598596 | 4.3:-20978512 | MS.gene068013:CDS |
| AGACAAAGGAGATGGCAAAG+AGG | 0.600946 | 4.3:+20977323 | None:intergenic |
| TTCCATTATTCAATGCCACA+GGG | 0.604354 | 4.3:-20977277 | MS.gene068013:CDS |
| ATGCACATGGAAATGATACA+TGG | 0.606888 | 4.3:-20978353 | MS.gene068013:CDS |
| TTAAGGATGGAGAAAATGGG+TGG | 0.607618 | 4.3:-20978582 | None:intergenic |
| TCACCTTCCCTCCAATTGCA+CGG | 0.609277 | 4.3:+20977397 | None:intergenic |
| TAAGGATGGAGAAAATGGGT+GGG | 0.609645 | 4.3:-20978581 | None:intergenic |
| GGGAGCCAGATAAGGAGGCA+TGG | 0.620410 | 4.3:-20976763 | MS.gene068013:CDS |
| GGTATTTGTGAGAATGTTGG+AGG | 0.624181 | 4.3:-20978481 | MS.gene068013:CDS |
| GGAAGTTCAAGAGAAGACAA+AGG | 0.628531 | 4.3:+20977309 | None:intergenic |
| GGAGGAAGAAGGTGAAAACT+GGG | 0.629153 | 4.3:-20978463 | MS.gene068013:CDS |
| CTATGCATCAGCTTCCTCAA+GGG | 0.636887 | 4.3:-20976734 | MS.gene068013:CDS |
| AGAATGTCTTTAGAGTACTC+AGG | 0.643445 | 4.3:+20977003 | None:intergenic |
| TATGTGGGAGCCAGATAAGG+AGG | 0.645828 | 4.3:-20976768 | MS.gene068013:CDS |
| CTTCTCTTGAACTTCCAACG+AGG | 0.646837 | 4.3:-20977302 | MS.gene068013:CDS |
| GATGACCAAAGCAAATGCCA+AGG | 0.653162 | 4.3:+20978277 | None:intergenic |
| GGCGCGTGGAGAGTTTCCAA+AGG | 0.654333 | 4.3:-20978427 | MS.gene068013:CDS |
| TATTCAGCGAAATTTCATCA+CGG | 0.662548 | 4.3:-20976959 | MS.gene068013:intron |
| TATGTGAAGAAAATGTACGG+AGG | 0.666492 | 4.3:-20978513 | MS.gene068013:CDS |
| TTTCACAATAACGACCCTTG+AGG | 0.678121 | 4.3:+20976720 | None:intergenic |
| TGCACATGGAAATGATACAT+GGG | 0.699531 | 4.3:-20978352 | MS.gene068013:CDS |
| GATGTGTATAAGGTGGCGCG+TGG | 0.734044 | 4.3:-20978441 | MS.gene068013:CDS |
| GGTAGTTGTAGTGATGCACA+TGG | 0.738222 | 4.3:-20978366 | MS.gene068013:CDS |
| GTACACACACCTCATCCCTG+TGG | 0.760386 | 4.3:+20977262 | None:intergenic |
| AAACTGGGATGTGTATAAGG+TGG | 0.767268 | 4.3:-20978448 | MS.gene068013:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTCATTTATTTATTTATT+TGG | - | chr4.3:20978342-20978361 | MS.gene068013:CDS | 10.0% |
| !! | ATAAATAAATGAAGTAATAA+AGG | + | chr4.3:20978337-20978356 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAGACAAAATCA+TGG | + | chr4.3:20977685-20977704 | None:intergenic | 15.0% |
| !! | AAAGTTAATTAATTAATGGT+AGG | + | chr4.3:20977780-20977799 | None:intergenic | 15.0% |
| !! | AATAACAAAAATTACTAGAA+AGG | + | chr4.3:20977108-20977127 | None:intergenic | 15.0% |
| !! | AGTGATTTAATTACTAAATA+TGG | + | chr4.3:20977029-20977048 | None:intergenic | 15.0% |
| !! | ATAGAAAATATAAATATTGG+TGG | - | chr4.3:20978566-20978585 | MS.gene068013:CDS | 15.0% |
| !! | ATATTTAGTAATTAAATCAC+TGG | - | chr4.3:20977028-20977047 | MS.gene068013:CDS | 15.0% |
| !! | GGAATAGAAAATATAAATAT+TGG | - | chr4.3:20978563-20978582 | MS.gene068013:CDS | 15.0% |
| !! | GTTAAATATTACTAGTAATA+TGG | + | chr4.3:20977475-20977494 | None:intergenic | 15.0% |
| !! | TATTACTAGTAATATTTAAC+CGG | - | chr4.3:20977475-20977494 | MS.gene068013:intron | 15.0% |
| !! | TTAATCGTAATTAAATTTAC+TGG | - | chr4.3:20978414-20978433 | MS.gene068013:CDS | 15.0% |
| !! | AAAAAATGAAAGGTTTGAAA+TGG | + | chr4.3:20977084-20977103 | None:intergenic | 20.0% |
| !! | AAAATACCTTAGAAATTCTT+AGG | - | chr4.3:20977273-20977292 | MS.gene068013:CDS | 20.0% |
| !! | AATATTACTAGTAATATGGA+TGG | + | chr4.3:20977471-20977490 | None:intergenic | 20.0% |
| !! | TTCAAAAAAAAAAAGGAACA+GGG | - | chr4.3:20977187-20977206 | MS.gene068013:intron | 20.0% |
| !! | TTTCAAAAAAAAAAAGGAAC+AGG | - | chr4.3:20977186-20977205 | MS.gene068013:intron | 20.0% |
| !!! | AAAAATGAAAGGTTTGAAAT+GGG | + | chr4.3:20977083-20977102 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTAATCATAGCAC+AGG | - | chr4.3:20978075-20978094 | MS.gene068013:intron | 20.0% |
| !!! | TCTTGATATATTTCTTCTTT+TGG | - | chr4.3:20978113-20978132 | MS.gene068013:intron | 20.0% |
| !!! | TGTTAATTTGATTAGATACT+TGG | - | chr4.3:20977835-20977854 | MS.gene068013:intron | 20.0% |
| !!! | TTCCTTTTTTTTTTTGAAAG+TGG | + | chr4.3:20977185-20977204 | None:intergenic | 20.0% |
| ! | CTAGAAAGGTAAAAAATGAA+AGG | + | chr4.3:20977094-20977113 | None:intergenic | 25.0% |
| ! | GAAGTAATAAAGGAAAATGA+TGG | + | chr4.3:20978327-20978346 | None:intergenic | 25.0% |
| ! | GAATATGTGAAGAAAATGTA+CGG | - | chr4.3:20976739-20976758 | MS.gene068013:CDS | 25.0% |
| ! | GTCCACTTTCAAAAAAAAAA+AGG | - | chr4.3:20977180-20977199 | MS.gene068013:intron | 25.0% |
| !!! | AAATTTTGCTATGAGATTGA+AGG | - | chr4.3:20978454-20978473 | MS.gene068013:CDS | 25.0% |
| !!! | ATTTTAGTGCTAGTATAACA+TGG | - | chr4.3:20977149-20977168 | MS.gene068013:intron | 25.0% |
| ACTAGTCCTAAGAATTTCTA+AGG | + | chr4.3:20977282-20977301 | None:intergenic | 30.0% | |
| AGATATGGAGATCACATTAT+GGG | - | chr4.3:20978216-20978235 | MS.gene068013:intron | 30.0% | |
| AGATTCAATTCATCATCCTT+TGG | + | chr4.3:20976847-20976866 | None:intergenic | 30.0% | |
| ATGTGAAGATTGCATCATAT+GGG | + | chr4.3:20977603-20977622 | None:intergenic | 30.0% | |
| ATTGCTAAATCAGATAAGAC+TGG | - | chr4.3:20978180-20978199 | MS.gene068013:intron | 30.0% | |
| CTTCTAATTCAGCTTTACAT+TGG | + | chr4.3:20977721-20977740 | None:intergenic | 30.0% | |
| GATGAATTGAATCTGTATGA+TGG | - | chr4.3:20976853-20976872 | MS.gene068013:intron | 30.0% | |
| GGAATTGAGATGTTTAGATA+TGG | - | chr4.3:20978201-20978220 | MS.gene068013:intron | 30.0% | |
| TAGATATGGAGATCACATTA+TGG | - | chr4.3:20978215-20978234 | MS.gene068013:intron | 30.0% | |
| TAGTGCGTTAAATATTCCAA+AGG | + | chr4.3:20977312-20977331 | None:intergenic | 30.0% | |
| TATTCAGCGAAATTTCATCA+CGG | - | chr4.3:20978296-20978315 | MS.gene068013:CDS | 30.0% | |
| TGAAATTTCGCTGAATAAGA+CGG | + | chr4.3:20978293-20978312 | None:intergenic | 30.0% | |
| ! | AGGGTGATAATGTTATGTTT+CGG | + | chr4.3:20977915-20977934 | None:intergenic | 30.0% |
| ! | TCATTATCTACGTTTTGTCA+AGG | + | chr4.3:20977398-20977417 | None:intergenic | 30.0% |
| !! | TTATGATATTTTGAGCTGTC+CGG | + | chr4.3:20977497-20977516 | None:intergenic | 30.0% |
| AAAATCCTTGGCATTTGCTT+TGG | - | chr4.3:20976973-20976992 | MS.gene068013:CDS | 35.0% | |
| AACAGGGATAAATACTGATG+TGG | - | chr4.3:20977203-20977222 | MS.gene068013:intron | 35.0% | |
| ATGCACATGGAAATGATACA+TGG | - | chr4.3:20976902-20976921 | MS.gene068013:intron | 35.0% | |
| ATGTGAAGAAAATGTACGGA+GGG | - | chr4.3:20976743-20976762 | MS.gene068013:CDS | 35.0% | |
| CATGTGAAGATTGCATCATA+TGG | + | chr4.3:20977604-20977623 | None:intergenic | 35.0% | |
| CTTTACGTTACGACATGATA+TGG | - | chr4.3:20977629-20977648 | MS.gene068013:intron | 35.0% | |
| GACATGAACAAGAAAATCCT+TGG | - | chr4.3:20976961-20976980 | MS.gene068013:CDS | 35.0% | |
| GGTCGTTATTGTGAAAGAAA+TGG | - | chr4.3:20978542-20978561 | MS.gene068013:CDS | 35.0% | |
| TATGTGAAGAAAATGTACGG+AGG | - | chr4.3:20976742-20976761 | MS.gene068013:CDS | 35.0% | |
| TGAAAACTGGGATGTGTATA+AGG | - | chr4.3:20976804-20976823 | MS.gene068013:CDS | 35.0% | |
| TGCACATGGAAATGATACAT+GGG | - | chr4.3:20976903-20976922 | MS.gene068013:intron | 35.0% | |
| TTCCATTATTCAATGCCACA+GGG | - | chr4.3:20977978-20977997 | MS.gene068013:intron | 35.0% | |
| TTTCCATTATTCAATGCCAC+AGG | - | chr4.3:20977977-20977996 | MS.gene068013:intron | 35.0% | |
| ! | CGTTACTTTAGTTGTTCGTT+TGG | - | chr4.3:20977423-20977442 | MS.gene068013:intron | 35.0% |
| ! | TTACTGGCTAATGTAATGAC+AGG | - | chr4.3:20978430-20978449 | MS.gene068013:CDS | 35.0% |
| !! | AGAATGTCTTTAGAGTACTC+AGG | + | chr4.3:20978255-20978274 | None:intergenic | 35.0% |
| !!! | AAAATGTACGGAGGGTATTT+TGG | - | chr4.3:20976751-20976770 | MS.gene068013:CDS | 35.0% |
| !!! | AAATGTACGGAGGGTATTTT+GGG | - | chr4.3:20976752-20976771 | MS.gene068013:CDS | 35.0% |
| !!! | TATGATGGTTTTGTGATCAC+TGG | - | chr4.3:20976868-20976887 | MS.gene068013:intron | 35.0% |
| AAACTGGGATGTGTATAAGG+TGG | - | chr4.3:20976807-20976826 | MS.gene068013:intron | 40.0% | |
| ACTCGTCTATATGCATATGG+CGG | - | chr4.3:20977577-20977596 | MS.gene068013:intron | 40.0% | |
| CACACTCGTCTATATGCATA+TGG | - | chr4.3:20977574-20977593 | MS.gene068013:intron | 40.0% | |
| GATCACATTATGGGAATCCA+AGG | - | chr4.3:20978225-20978244 | MS.gene068013:intron | 40.0% | |
| GGAAGTTCAAGAGAAGACAA+AGG | + | chr4.3:20977949-20977968 | None:intergenic | 40.0% | |
| GGTATTTGTGAGAATGTTGG+AGG | - | chr4.3:20976774-20976793 | MS.gene068013:CDS | 40.0% | |
| TAACTAACAGCTTGACGTGT+CGG | - | chr4.3:20977233-20977252 | MS.gene068013:intron | 40.0% | |
| TCAAGAGAAGACAAAGGAGA+TGG | + | chr4.3:20977943-20977962 | None:intergenic | 40.0% | |
| TGCTATGAGATTGAAGGAGA+AGG | - | chr4.3:20978460-20978479 | MS.gene068013:CDS | 40.0% | |
| TTTAGCAATCACTTCAGCCT+TGG | + | chr4.3:20978169-20978188 | None:intergenic | 40.0% | |
| TTTCACAATAACGACCCTTG+AGG | + | chr4.3:20978538-20978557 | None:intergenic | 40.0% | |
| ! | ATCCCTGTGGCATTGAATAA+TGG | + | chr4.3:20977983-20978002 | None:intergenic | 40.0% |
| ! | TGAATAATGGAAAGCCTCGT+TGG | + | chr4.3:20977970-20977989 | None:intergenic | 40.0% |
| ! | TGGGGTATTTGTGAGAATGT+TGG | - | chr4.3:20976771-20976790 | MS.gene068013:CDS | 40.0% |
| !!! | AATGTACGGAGGGTATTTTG+GGG | - | chr4.3:20976753-20976772 | MS.gene068013:CDS | 40.0% |
| !!! | TTTTTTGAAAGTGGACCACC+TGG | + | chr4.3:20977176-20977195 | None:intergenic | 40.0% |
| ACTATGCATCAGCTTCCTCA+AGG | - | chr4.3:20978520-20978539 | MS.gene068013:CDS | 45.0% | |
| AGACAAAGGAGATGGCAAAG+AGG | + | chr4.3:20977935-20977954 | None:intergenic | 45.0% | |
| ATGAGATTGAAGGAGAAGGC+TGG | - | chr4.3:20978464-20978483 | MS.gene068013:CDS | 45.0% | |
| CTAGTATAACATGGTCCAGG+TGG | - | chr4.3:20977158-20977177 | MS.gene068013:intron | 45.0% | |
| CTATGCATCAGCTTCCTCAA+GGG | - | chr4.3:20978521-20978540 | MS.gene068013:CDS | 45.0% | |
| CTTCTCTTGAACTTCCAACG+AGG | - | chr4.3:20977953-20977972 | MS.gene068013:intron | 45.0% | |
| GACAAAGGAGATGGCAAAGA+GGG | + | chr4.3:20977934-20977953 | None:intergenic | 45.0% | |
| GATGACCAAAGCAAATGCCA+AGG | + | chr4.3:20976981-20977000 | None:intergenic | 45.0% | |
| GGAGGAAGAAGGTGAAAACT+GGG | - | chr4.3:20976792-20976811 | MS.gene068013:CDS | 45.0% | |
| GGTAGTTGTAGTGATGCACA+TGG | - | chr4.3:20976889-20976908 | MS.gene068013:intron | 45.0% | |
| GTGAGAATGTTGGAGGAAGA+AGG | - | chr4.3:20976781-20976800 | MS.gene068013:CDS | 45.0% | |
| GTGCTAGTATAACATGGTCC+AGG | - | chr4.3:20977155-20977174 | MS.gene068013:intron | 45.0% | |
| TAGATACTTGGCCGTGCAAT+TGG | - | chr4.3:20977847-20977866 | MS.gene068013:intron | 45.0% | |
| TATTCAATGCCACAGGGATG+AGG | - | chr4.3:20977984-20978003 | MS.gene068013:intron | 45.0% | |
| TGGAGGAAGAAGGTGAAAAC+TGG | - | chr4.3:20976791-20976810 | MS.gene068013:CDS | 45.0% | |
| TGGCATTTGCTTTGGTCATC+AGG | - | chr4.3:20976981-20977000 | MS.gene068013:CDS | 45.0% | |
| ! | TAGAGTACTCAGGATGACCT+TGG | + | chr4.3:20978245-20978264 | None:intergenic | 45.0% |
| !! | AGGACTAGTTCTCTCTCCTT+TGG | - | chr4.3:20977293-20977312 | MS.gene068013:CDS | 45.0% |
| !! | CTTGACGTGTCGGTGTTTTA+TGG | - | chr4.3:20977243-20977262 | MS.gene068013:intron | 45.0% |
| !! | TTAATTAATTAACTTTATAA+AGG | - | chr4.3:20977784-20977803 | MS.gene068013:intron | 5.0% |
| !! | TTATAAAGTTAATTAATTAA+TGG | + | chr4.3:20977784-20977803 | None:intergenic | 5.0% |
| AAGGTGACTCGATCTCCAAC+TGG | - | chr4.3:20977874-20977893 | MS.gene068013:intron | 50.0% | |
| ATACTTGGCCGTGCAATTGG+AGG | - | chr4.3:20977850-20977869 | MS.gene068013:intron | 50.0% | |
| ATGGAGAAAATGGGTGGGAG+TGG | - | chr4.3:20976679-20976698 | MS.gene068013:CDS | 50.0% | |
| CTCTTCCATGCCTCCTTATC+TGG | + | chr4.3:20978500-20978519 | None:intergenic | 50.0% | |
| GAAGGAGAAGGCTGGTATGT+GGG | - | chr4.3:20978472-20978491 | MS.gene068013:CDS | 50.0% | |
| GTGGGAGTGGGAAGAGATTT+GGG | - | chr4.3:20976692-20976711 | MS.gene068013:CDS | 50.0% | |
| TACTTGGCCGTGCAATTGGA+GGG | - | chr4.3:20977851-20977870 | MS.gene068013:intron | 50.0% | |
| TATGTGGGAGCCAGATAAGG+AGG | - | chr4.3:20978487-20978506 | MS.gene068013:CDS | 50.0% | |
| TCACCTTCCCTCCAATTGCA+CGG | + | chr4.3:20977861-20977880 | None:intergenic | 50.0% | |
| TGAAGGAGAAGGCTGGTATG+TGG | - | chr4.3:20978471-20978490 | MS.gene068013:CDS | 50.0% | |
| TGGAGAAAATGGGTGGGAGT+GGG | - | chr4.3:20976680-20976699 | MS.gene068013:CDS | 50.0% | |
| TGGGAGTGGGAAGAGATTTG+GGG | - | chr4.3:20976693-20976712 | MS.gene068013:CDS | 50.0% | |
| TGGTATGTGGGAGCCAGATA+AGG | - | chr4.3:20978484-20978503 | MS.gene068013:CDS | 50.0% | |
| ACACCAATGTCCCAGCCAGT+TGG | + | chr4.3:20977892-20977911 | None:intergenic | 55.0% | |
| GACTCGATCTCCAACTGGCT+GGG | - | chr4.3:20977879-20977898 | MS.gene068013:intron | 55.0% | |
| GATGTGTATAAGGTGGCGCG+TGG | - | chr4.3:20976814-20976833 | MS.gene068013:intron | 55.0% | |
| GCAATCACTTCAGCCTTGGC+AGG | + | chr4.3:20978165-20978184 | None:intergenic | 55.0% | |
| GCTAAGAGAGCTACCTGCCA+AGG | - | chr4.3:20978149-20978168 | MS.gene068013:intron | 55.0% | |
| GGTGGGAGTGGGAAGAGATT+TGG | - | chr4.3:20976691-20976710 | MS.gene068013:CDS | 55.0% | |
| GTACACACACCTCATCCCTG+TGG | + | chr4.3:20977996-20978015 | None:intergenic | 55.0% | |
| TCTCCAACTGGCTGGGACAT+TGG | - | chr4.3:20977886-20977905 | MS.gene068013:intron | 55.0% | |
| TGACTCGATCTCCAACTGGC+TGG | - | chr4.3:20977878-20977897 | MS.gene068013:intron | 55.0% | |
| GGCGCGTGGAGAGTTTCCAA+AGG | - | chr4.3:20976828-20976847 | MS.gene068013:intron | 60.0% | |
| GGGAGCCAGATAAGGAGGCA+TGG | - | chr4.3:20978492-20978511 | MS.gene068013:CDS | 60.0% | |
| TGGCCGTGCAATTGGAGGGA+AGG | - | chr4.3:20977855-20977874 | MS.gene068013:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 20976679 | 20978598 | 20976679 | ID=MS.gene068013 |
| chr4.3 | mRNA | 20976679 | 20978598 | 20976679 | ID=MS.gene068013.t1;Parent=MS.gene068013 |
| chr4.3 | exon | 20978275 | 20978598 | 20978275 | ID=MS.gene068013.t1.exon1;Parent=MS.gene068013.t1 |
| chr4.3 | CDS | 20978275 | 20978598 | 20978275 | ID=cds.MS.gene068013.t1;Parent=MS.gene068013.t1 |
| chr4.3 | exon | 20977272 | 20977427 | 20977272 | ID=MS.gene068013.t1.exon2;Parent=MS.gene068013.t1 |
| chr4.3 | CDS | 20977272 | 20977427 | 20977272 | ID=cds.MS.gene068013.t1;Parent=MS.gene068013.t1 |
| chr4.3 | exon | 20976960 | 20977127 | 20976960 | ID=MS.gene068013.t1.exon3;Parent=MS.gene068013.t1 |
| chr4.3 | CDS | 20976960 | 20977127 | 20976960 | ID=cds.MS.gene068013.t1;Parent=MS.gene068013.t1 |
| chr4.3 | exon | 20976679 | 20976825 | 20976679 | ID=MS.gene068013.t1.exon4;Parent=MS.gene068013.t1 |
| chr4.3 | CDS | 20976679 | 20976825 | 20976679 | ID=cds.MS.gene068013.t1;Parent=MS.gene068013.t1 |
| Gene Sequence |
| Protein sequence |
