AlfalfaGEDB | MS.gene053590

M. sativa cultivar XinJiangDaYe / MS.gene053590

KEGG: K22314
GO: -
PFAM: PF00117.31

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053590.t1	XP_003608377.2	97.7	264	6	0	1	264	1	264	1.00E-149	539.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053590.t1	O82225	51.0	247	119	1	4	248	1	247	4.7e-71	269.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053590.t1	G7JV26	97.7	264	6	0	1	264	1	264	7.4e-150	539.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049653	MS.gene053590	0.814068	1.86E-51	-1.69E-46
MS.gene050384	MS.gene053590	0.818338	2.07E-52	-1.69E-46
MS.gene050386	MS.gene053590	0.826443	2.70E-54	-1.69E-46
MS.gene050437	MS.gene053590	0.802559	5.30E-49	-1.69E-46
MS.gene050689	MS.gene053590	0.825491	4.55E-54	-1.69E-46
MS.gene050752	MS.gene053590	0.822945	1.80E-53	-1.69E-46
MS.gene051003	MS.gene053590	0.80584	1.10E-49	-1.69E-46
MS.gene051328	MS.gene053590	0.825813	3.82E-54	-1.69E-46
MS.gene051343	MS.gene053590	0.806158	9.42E-50	-1.69E-46
MS.gene052947	MS.gene053590	0.808766	2.64E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene002251	MS.gene053590	PPI
MS.gene053590	MS.gene028495	PPI
MS.gene053590	MS.gene01224	PPI
MS.gene053590	MS.gene002251	PPI
MS.gene053590	MS.gene02208	PPI
MS.gene068013	MS.gene053590	PPI
MS.gene071221	MS.gene053590	PPI
MS.gene76089	MS.gene053590	PPI
MS.gene90232	MS.gene053590	PPI
MS.gene94216	MS.gene053590	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053590.t1	MTR_4g093250	97.727	264	6	0	1	264	1	264	0.0	533
MS.gene053590.t1	MTR_5g083210	72.289	249	65	2	1	249	1	245	1.36e-133	377
MS.gene053590.t1	MTR_2g009720	60.000	240	93	1	9	248	8	244	2.55e-102	298
MS.gene053590.t1	MTR_2g009720	59.903	207	80	1	9	215	8	211	3.85e-88	262
MS.gene053590.t1	MTR_5g078650	58.000	50	18	1	42	91	54	100	7.66e-11	58.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053590.t1	AT2G23970	51.012	247	119	1	4	248	1	247	5.65e-91	270
MS.gene053590.t1	AT4G30550	46.559	247	129	1	4	247	3	249	1.03e-82	248
MS.gene053590.t1	AT4G30540	48.980	245	125	0	4	248	1	245	6.02e-81	244
MS.gene053590.t1	AT2G23960	44.672	244	133	1	5	246	1	244	1.86e-75	230
MS.gene053590.t1	AT4G30530	45.041	242	131	1	9	248	5	246	1.10e-74	228
MS.gene053590.t1	AT2G23960	46.635	208	109	1	5	210	1	208	2.46e-67	208

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Find 77 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCTTGGCATTTGCTT+TGG	0.382494	4.4:-21484306	MS.gene053590:CDS
AAAATGTACGGAGGGTATTT+TGG	0.159436	4.4:-21484528	MS.gene053590:CDS
AAGCTGGGATGTGTATAAGG+TGG	0.761338	4.4:-21484472	MS.gene053590:CDS
AAGGTGACTCGATCTCCAAC+TGG	0.484187	4.4:-21483280	MS.gene053590:CDS
ACACACACACCTCATCCCTG+TGG	0.758837	4.4:+21483161	None:intergenic
ACACCAATGTCCCATCCAGT+TGG	0.587627	4.4:+21483265	None:intergenic
ACTATGCATCAGCTTCCTCA+AGG	0.566000	4.4:-21482658	MS.gene053590:CDS
AGAATGTCTTTAGAGTACTC+AGG	0.643445	4.4:+21482907	None:intergenic
AGACAAAGGAGATGGCAAAG+AGG	0.600946	4.4:+21483222	None:intergenic
AGATATGGAGATCACATTAT+GGG	0.414653	4.4:-21482943	MS.gene053590:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAGGGATAAATACTGATG+TGG	-	chr4.4:21483145-21483164	MS.gene053590:intron	30.0%
AGATATGGAGATCACATTAT+GGG	-	chr4.4:21484259-21484278	MS.gene053590:intron	30.0%
AGATTCAATTCATCATCCTT+TGG	+	chr4.4:21482770-21482789	None:intergenic	30.0%
AGTGGTTATTGTGATCATTA+AGG	-	chr4.4:21483223-21483242	MS.gene053590:CDS	30.0%
CACATACTAACTAACAATAG+GGG	-	chr4.4:21483168-21483187	MS.gene053590:intron	30.0%
CTTCTAATTCAGCTTTACAT+TGG	+	chr4.4:21483773-21483792	None:intergenic	30.0%
GATGAATTGAATCTGTATGA+TGG	-	chr4.4:21482776-21482795	MS.gene053590:intron	30.0%
GCACATACTAACTAACAATA+GGG	-	chr4.4:21483167-21483186	MS.gene053590:intron	30.0%
GGAATTGAGATGTTTAGATA+TGG	-	chr4.4:21484244-21484263	MS.gene053590:intron	30.0%
GTGGTTATTGTGATCATTAA+GGG	-	chr4.4:21483224-21483243	MS.gene053590:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	21482602	21484622	21482602	ID=MS.gene053590
chr4.4	mRNA	21482602	21484622	21482602	ID=MS.gene053590.t1;Parent=MS.gene053590
chr4.4	exon	21484299	21484622	21484299	ID=MS.gene053590.t1.exon1;Parent=MS.gene053590.t1
chr4.4	CDS	21484299	21484622	21484299	ID=cds.MS.gene053590.t1;Parent=MS.gene053590.t1
chr4.4	exon	21483171	21483326	21483171	ID=MS.gene053590.t1.exon2;Parent=MS.gene053590.t1
chr4.4	CDS	21483171	21483326	21483171	ID=cds.MS.gene053590.t1;Parent=MS.gene053590.t1
chr4.4	exon	21482864	21483031	21482864	ID=MS.gene053590.t1.exon3;Parent=MS.gene053590.t1
chr4.4	CDS	21482864	21483031	21482864	ID=cds.MS.gene053590.t1;Parent=MS.gene053590.t1
chr4.4	exon	21482602	21482748	21482602	ID=MS.gene053590.t1.exon4;Parent=MS.gene053590.t1
chr4.4	CDS	21482602	21482748	21482602	ID=cds.MS.gene053590.t1;Parent=MS.gene053590.t1

Gene Sequence

>MS.gene053590

ATGGAGAAAATGGTAGGGAGTGGGAAGAGATTTGGGGTGTTGTTATGTGCAGATGATTCAGAATATGTGAAGAAAATGTACGGAGGGTATTTTGGGGTATTTGTGAGAATGTTGGAGGAAGAAGGTGAAAGCTGGGATGTGTATAAGGTGGCGCGTGGAGAGTTTCCAAAGGATGATGAATTGAATCTGTATGATGGTTTTGTGATCACTGGTAGTTGTAGTGATGCACATGGAAATGATACATGGGTCTCTCAACTTCTCAATTTGCTTAAGAAATTGAATGACATGAACAAGAAAATCCTTGGCATTTGCTTTGGTCATCAGGTACTAAATCAAATCAAATCAATCCATATTTAGTAATTAAATCACTGGTTATGTTGATTAATTTAGTCAATTTTCTTCCCATTTCAAACCTTTCATTTTTTTCCTTTCTACTAGTAATTTTTGTTATTTAATGCAATTGAATCGCATTTATTTTAGTGCTAGTACATGATGAGCGTATAACACATGGTCCAGGTGGTCCACTTTCAAAAAAAAAAAAGGAATAGGGATAAATACTGATGTGGCACATACTAACTAACAATAGGGGAAATAGTTTTTTTTTAGAGGAAAAATAGGGGAAGTGGTTATTGTGATCATTAAGGGATTATTTAAATTTTATAGACTATTTTGACTAACAAAGTGGACCAGGGACTATTTTAAAATTTTGATATATTGAAGGACTACTTGCTACACCCAAATTGACTATTACCCAAAAAAATACCTTAGAAATTCTTAGGACTGGTTCTCTCTCCTTTGGGATATTTAACGCACTAGTTATTTTTCACATTTTTTTTAATTTTTTCTTTTAAAAAATGTTGATCCTGCCTTGACAAAACGTAGATAATGACTTGACGTTACTTTAGTTGTTCGTTTGTACCTATCTATTACTAATATTTAACCAGACAACTCCAAAAATCATAATAATTAACATTTTCTTTATAAAAGAATATTTTGCCAGTTTTTGCGACATGTAAATCTTTAAAAGTATCACACTTGTCTATATAAGCATGGCCCATGTGATGCAATCTTCACATGCATCACTTTACGTTACGACATGATATGGTATCAACGCAGTTATATAAGTGCTTTATTACCATGGTTTTGTCTTTTTTTGTAACCTATGATGCCAATGTAAAGCTGAATTAGAAGTATTTTATTATTAATATATTTTACGTGCAAGTTTTGTCTACCATTAATTAACTTTATAAAGGAAATAATAATAATTGAGAGAACTGTTTATGTTAATTTGATTAGATACTTGGCCGTGCAATTGGAGGGAAGGTGACTCGATCTCCAACTGGATGGGACATTGGTGTCCGAAACATAACATTATCACCCTCTTTGCCATCTCCTTTGTCTTCTCTTGAACTTCCAACGAGTCTTTCCATTATTCAATGCCACAGGGATGAGGTGTGTGTGTGTACATCTGCAATACCTTATTAAATTAACATTATCATATCTTTAGTCTCACATTATTTTTTTTAATCATAGCACAGGATAAGTTAGTTTAGTTCTTGATATATTTCTCCTTTTGGATTTAATTAATTAGCTAAGAGAGCTACCTGCCAAGGCTGAAGTGATTGCTAAATCGGATAAGACTGGAATTGAGATGTTTAGATATGGAGATCACATTATGGGAATTCAAGGTCATCCTGAGTACTCTAAAGACATTCTTTTGAACATTATCGACCGTCTTATTCAGCGAAATTTCATCACGGTATAACCATCATTTTCCTTTATTACTTCATTTATTTATTTTTAATATTGTACAAATACTATTTGATGTTTGATTATTGCTAATTTAGTAAGAGTTGGTTGATTTGAATTGACAGGAAAATTTTGCTATGAGATTGAAGGAGAAGGCTGGTATGTGGGAGCCAGATAAGGAGGCATGGAAGAGACTATGCATCAGCTTCCTCAAGGGTCGTTATTGTGAAAGAAATGGAATAGAAAATATAAATATTGGTGGTATATTCTAA

Protein sequence

>MS.gene053590.t1

MEKMVGSGKRFGVLLCADDSEYVKKMYGGYFGVFVRMLEEEGESWDVYKVARGEFPKDDELNLYDGFVITGSCSDAHGNDTWVSQLLNLLKKLNDMNKKILGICFGHQILGRAIGGKVTRSPTGWDIGVRNITLSPSLPSPLSSLELPTSLSIIQCHRDELRELPAKAEVIAKSDKTGIEMFRYGDHIMGIQGHPEYSKDILLNIIDRLIQRNFITENFAMRLKEKAGMWEPDKEAWKRLCISFLKGRYCERNGIENINIGGIF