Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94216.t1 | XP_003616688.1 | 95.5 | 242 | 11 | 0 | 1 | 242 | 4 | 245 | 8.50E-135 | 489.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94216.t1 | O82225 | 48.8 | 240 | 119 | 1 | 4 | 239 | 6 | 245 | 5.0e-67 | 255.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94216.t1 | G7K286 | 95.5 | 242 | 11 | 0 | 1 | 242 | 4 | 245 | 6.1e-135 | 489.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene94216 | MS.gene028495 | PPI |
| MS.gene94216 | MS.gene01224 | PPI |
| MS.gene94216 | MS.gene002251 | PPI |
| MS.gene94216 | MS.gene90232 | PPI |
| MS.gene94216 | MS.gene053590 | PPI |
| MS.gene94216 | MS.gene02208 | PPI |
| MS.gene071221 | MS.gene94216 | PPI |
| MS.gene76089 | MS.gene94216 | PPI |
| MS.gene94216 | MS.gene068013 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94216.t1 | MTR_5g083210 | 95.455 | 242 | 11 | 0 | 1 | 242 | 4 | 245 | 7.13e-175 | 481 |
| MS.gene94216.t1 | MTR_4g093250 | 72.614 | 241 | 64 | 1 | 4 | 242 | 9 | 249 | 3.52e-120 | 343 |
| MS.gene94216.t1 | MTR_2g009720 | 61.441 | 236 | 90 | 1 | 4 | 239 | 8 | 242 | 8.47e-100 | 291 |
| MS.gene94216.t1 | MTR_2g009720 | 62.136 | 206 | 77 | 1 | 4 | 209 | 8 | 212 | 6.13e-86 | 256 |
| MS.gene94216.t1 | MTR_5g078650 | 69.231 | 52 | 16 | 0 | 35 | 86 | 49 | 100 | 7.02e-16 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94216.t1 | AT2G23970 | 48.548 | 241 | 120 | 1 | 3 | 239 | 5 | 245 | 5.22e-84 | 251 |
| MS.gene94216.t1 | AT4G30550 | 44.813 | 241 | 128 | 1 | 4 | 239 | 8 | 248 | 2.71e-77 | 234 |
| MS.gene94216.t1 | AT4G30540 | 47.059 | 238 | 124 | 1 | 4 | 239 | 6 | 243 | 6.81e-75 | 228 |
| MS.gene94216.t1 | AT4G30530 | 41.079 | 241 | 138 | 1 | 3 | 239 | 4 | 244 | 1.81e-68 | 211 |
| MS.gene94216.t1 | AT2G23960 | 41.909 | 241 | 136 | 1 | 3 | 239 | 4 | 244 | 4.75e-68 | 210 |
| MS.gene94216.t1 | AT2G23960 | 43.458 | 214 | 117 | 1 | 3 | 212 | 4 | 217 | 1.09e-60 | 190 |
Find 58 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATGCATGGAGGGTATTT+TGG | 0.139894 | 5.4:-65944381 | MS.gene94216:CDS |
| TAAATATGGAGATCATATTT+TGG | 0.165205 | 5.4:-65940873 | MS.gene94216:CDS |
| CTCTTCCAGGCATTTGTATC+TGG | 0.247583 | 5.4:+65939937 | None:intergenic |
| AAAATCCTTGGCATTTGTTT+TGG | 0.269092 | 5.4:-65944159 | MS.gene94216:CDS |
| GGAATTGAGATGTTTAAATA+TGG | 0.288117 | 5.4:-65940887 | MS.gene94216:CDS |
| AAATCCATTCTTGAGAAAAC+TGG | 0.336448 | 5.4:+65939906 | None:intergenic |
| ACTGGTGCAAAGTCTCTTCC+AGG | 0.383119 | 5.4:+65939924 | None:intergenic |
| TCGATTATAGAAAGCTTTGT+TGG | 0.391349 | 5.4:+65941086 | None:intergenic |
| AAAATGGGTTCGAAGAGATT+TGG | 0.394261 | 5.4:-65944441 | MS.gene94216:CDS |
| GGTAGTTGCAATGATGCTTA+TGG | 0.400890 | 5.4:-65944243 | MS.gene94216:CDS |
| AAGGTACTTGGCCGTGCATT+GGG | 0.412227 | 5.4:-65941200 | MS.gene94216:CDS |
| ATGCTTATGGAAATGAGAAA+TGG | 0.439165 | 5.4:-65944230 | MS.gene94216:CDS |
| TGGGGTATTCTTGAAAATGT+TGG | 0.442512 | 5.4:-65944361 | MS.gene94216:CDS |
| CCGTGCATTGGGAGGAAAGG+TGG | 0.444436 | 5.4:-65941189 | MS.gene94216:CDS |
| TTTGGGAATTCAAGGTCATC+CGG | 0.454621 | 5.4:-65940855 | MS.gene94216:CDS |
| TCTCCTACTGGTTGGGACAT+TGG | 0.456529 | 5.4:-65941161 | MS.gene94216:CDS |
| TAAGGTACTTGGCCGTGCAT+TGG | 0.466217 | 5.4:-65941201 | MS.gene94216:intron |
| GGGTCGCTCTCCTACTGGTT+GGG | 0.466637 | 5.4:-65941168 | MS.gene94216:CDS |
| AGACTCAACTCATCATCCTT+AGG | 0.471374 | 5.4:+65944288 | None:intergenic |
| ATCATGTTTGATAAGGTACT+TGG | 0.487889 | 5.4:-65941212 | MS.gene94216:intron |
| GCAATTACCTCTGCCTTAGC+AGG | 0.488420 | 5.4:+65940926 | None:intergenic |
| TATGATGGGTTTGTGATCAC+TGG | 0.491412 | 5.4:-65944264 | MS.gene94216:CDS |
| TTGCTATAGGAGCAAGGGAG+AGG | 0.492692 | 5.4:-65939975 | MS.gene94216:CDS |
| TTTCTATAATCGAATGTCAC+AGG | 0.494866 | 5.4:-65941076 | MS.gene94216:CDS |
| TGGTGTGTTGTTATGTGCTG+AGG | 0.501318 | 5.4:-65944421 | MS.gene94216:CDS |
| AAGGTGGGTCGCTCTCCTAC+TGG | 0.509740 | 5.4:-65941173 | MS.gene94216:CDS |
| GATGAGTTGAGTCTTTATGA+TGG | 0.518930 | 5.4:-65944279 | MS.gene94216:CDS |
| GATACAAGAGTTACCTGCTA+AGG | 0.520008 | 5.4:-65940939 | MS.gene94216:CDS |
| TGGGTCGCTCTCCTACTGGT+TGG | 0.526632 | 5.4:-65941169 | MS.gene94216:CDS |
| GGTATTCTTGAAAATGTTGG+AGG | 0.537016 | 5.4:-65944358 | MS.gene94216:CDS |
| ATGAGTTGAGTCTTTATGAT+GGG | 0.544846 | 5.4:-65944278 | MS.gene94216:CDS |
| TGCTATAGGAGCAAGGGAGA+GGG | 0.545447 | 5.4:-65939974 | MS.gene94216:CDS |
| CGTGCATTGGGAGGAAAGGT+GGG | 0.545529 | 5.4:-65941188 | MS.gene94216:CDS |
| ATTGCTAGGTCAGATAAGAC+TGG | 0.554445 | 5.4:-65940908 | MS.gene94216:CDS |
| TAGAGCCAGATACAAATGCC+TGG | 0.563834 | 5.4:-65939942 | MS.gene94216:CDS |
| TTCATGTGGAGAGTTTCCTA+AGG | 0.566836 | 5.4:-65944304 | MS.gene94216:CDS |
| AATCGAATGTCACAGGGATG+AGG | 0.572822 | 5.4:-65941069 | MS.gene94216:intron |
| GAAGGGAAACAAATATGTGA+TGG | 0.575220 | 5.4:+65941119 | None:intergenic |
| CATCCAACGTAATTTCATCA+AGG | 0.575767 | 5.4:-65940792 | MS.gene94216:intron |
| CCACCTTTCCTCCCAATGCA+CGG | 0.582342 | 5.4:+65941189 | None:intergenic |
| TTTGTTGGAAGATCAAGAGA+AGG | 0.582547 | 5.4:+65941101 | None:intergenic |
| AGAATATCTTTAGAGTACTC+CGG | 0.594538 | 5.4:+65940836 | None:intergenic |
| TGGCCGTGCATTGGGAGGAA+AGG | 0.597120 | 5.4:-65941192 | MS.gene94216:CDS |
| CTAAGGCAGAGGTAATTGCT+AGG | 0.598401 | 5.4:-65940922 | MS.gene94216:CDS |
| TTGTTGGAAGATCAAGAGAA+GGG | 0.600896 | 5.4:+65941102 | None:intergenic |
| ATACCTTGATGAAATTACGT+TGG | 0.603079 | 5.4:+65940789 | None:intergenic |
| ATGTGATAAAGATGCATGGA+GGG | 0.610169 | 5.4:-65944389 | MS.gene94216:CDS |
| ATTTCTTAATCAATGTGACA+AGG | 0.618688 | 5.4:+65944199 | None:intergenic |
| AGAGTTACCTGCTAAGGCAG+AGG | 0.620834 | 5.4:-65940933 | MS.gene94216:CDS |
| TTCTATAATCGAATGTCACA+GGG | 0.622205 | 5.4:-65941075 | MS.gene94216:CDS |
| GTACTTGGCCGTGCATTGGG+AGG | 0.623886 | 5.4:-65941197 | MS.gene94216:CDS |
| TGGAGGAAGAAAATGAGACA+TGG | 0.626432 | 5.4:-65944341 | MS.gene94216:CDS |
| GAGTATGTGATAAAGATGCA+TGG | 0.626622 | 5.4:-65944393 | MS.gene94216:CDS |
| GGTGGCCAAAACAAATGCCA+AGG | 0.630316 | 5.4:+65944154 | None:intergenic |
| GGAGGAAGAAAATGAGACAT+GGG | 0.638380 | 5.4:-65944340 | MS.gene94216:CDS |
| GACATGTACAAAGTTTCATG+TGG | 0.640249 | 5.4:-65944318 | MS.gene94216:CDS |
| ACACCAATGTCCCAACCAGT+AGG | 0.651774 | 5.4:+65941158 | None:intergenic |
| TATGTGATAAAGATGCATGG+AGG | 0.687190 | 5.4:-65944390 | MS.gene94216:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATACATAATTAAGTTAT+AGG | - | chr5.4:65940299-65940318 | MS.gene94216:intron | 10.0% |
| !! | ACAAAAATTTACTTAAAAAT+AGG | - | chr5.4:65941862-65941881 | MS.gene94216:intron | 10.0% |
| !! | CAAAAATTTACTTAAAAATA+GGG | - | chr5.4:65941863-65941882 | MS.gene94216:intron | 10.0% |
| !! | TAATATATAATAGTAATTGA+TGG | - | chr5.4:65943351-65943370 | MS.gene94216:intron | 10.0% |
| !!! | ATTTCAATTTTTTATTACTT+TGG | - | chr5.4:65943601-65943620 | MS.gene94216:intron | 10.0% |
| !!! | TTCATTAAAACTATATTTTA+GGG | - | chr5.4:65941477-65941496 | MS.gene94216:intron | 10.0% |
| !!! | TTTCATTAAAACTATATTTT+AGG | - | chr5.4:65941476-65941495 | MS.gene94216:intron | 10.0% |
| !! | AAAAAGTTGACATATTTATA+GGG | + | chr5.4:65941520-65941539 | None:intergenic | 15.0% |
| !! | AAAGTTGAAAAAAAAAATAG+AGG | + | chr5.4:65941552-65941571 | None:intergenic | 15.0% |
| !! | AAGTTGAAAAAAAAAATAGA+GGG | + | chr5.4:65941551-65941570 | None:intergenic | 15.0% |
| !! | AATTTGATTCATATATATCA+AGG | + | chr5.4:65944066-65944085 | None:intergenic | 15.0% |
| !! | ACTTTCTATAATATCTAATA+AGG | + | chr5.4:65940852-65940871 | None:intergenic | 15.0% |
| !! | ATAACATAACTCTATATAAA+TGG | + | chr5.4:65941998-65942017 | None:intergenic | 15.0% |
| !! | ATGAAAATGATTCTTAAATA+GGG | - | chr5.4:65943650-65943669 | MS.gene94216:intron | 15.0% |
| !! | CTAAAAATAAAACTAGAAAT+TGG | + | chr5.4:65943580-65943599 | None:intergenic | 15.0% |
| !! | GTTAGAAATATGAATTAATT+TGG | - | chr5.4:65941415-65941434 | MS.gene94216:intron | 15.0% |
| !! | TAACATAACTCTATATAAAT+GGG | + | chr5.4:65941997-65942016 | None:intergenic | 15.0% |
| !! | TTCAATTACTATTGAATTTA+AGG | - | chr5.4:65944153-65944172 | MS.gene94216:CDS | 15.0% |
| !! | TTGTTAATTTCTATTAAGTA+CGG | - | chr5.4:65940220-65940239 | MS.gene94216:intron | 15.0% |
| !!! | AAAAAGTTGGTATATTTATA+GGG | - | chr5.4:65941954-65941973 | MS.gene94216:intron | 15.0% |
| !!! | ATGAATTTTTATATTTTTGG+CGG | - | chr5.4:65941734-65941753 | MS.gene94216:intron | 15.0% |
| !!! | ATTTGATAATTAGATTTCTA+TGG | - | chr5.4:65941023-65941042 | MS.gene94216:intron | 15.0% |
| !!! | GTACTACTTTTAAAAATAAA+TGG | - | chr5.4:65940964-65940983 | MS.gene94216:intron | 15.0% |
| !!! | TAAAAAGTTGGTATATTTAT+AGG | - | chr5.4:65941953-65941972 | MS.gene94216:intron | 15.0% |
| !!! | TAGTGATAGAAAATTTTATA+GGG | - | chr5.4:65941894-65941913 | MS.gene94216:intron | 15.0% |
| !!! | TCATATTTAATTCATGTTTT+TGG | + | chr5.4:65941718-65941737 | None:intergenic | 15.0% |
| !!! | TCTTGTTTATAAGAAAAAAA+CGG | + | chr5.4:65940731-65940750 | None:intergenic | 15.0% |
| !!! | TGAAATTTAAGTTTTGATTT+AGG | - | chr5.4:65941073-65941092 | MS.gene94216:CDS | 15.0% |
| !!! | TTCTTTTATTTGTGATTAAA+AGG | + | chr5.4:65942253-65942272 | None:intergenic | 15.0% |
| !!! | TTTTTTCTTATAAACAAGAT+CGG | - | chr5.4:65940732-65940751 | MS.gene94216:intron | 15.0% |
| !! | AAATTAGATGACTAAAACAT+GGG | - | chr5.4:65943970-65943989 | MS.gene94216:intron | 20.0% |
| !! | ATTATGATGAAAAATACTTG+AGG | + | chr5.4:65943335-65943354 | None:intergenic | 20.0% |
| !! | CAAAAAGTTGACATATTTAT+AGG | + | chr5.4:65941521-65941540 | None:intergenic | 20.0% |
| !! | GAAATTAACAATTAATTACC+TGG | + | chr5.4:65940211-65940230 | None:intergenic | 20.0% |
| !! | GATCATAATAACAATATTGT+AGG | + | chr5.4:65942226-65942245 | None:intergenic | 20.0% |
| !! | GATGAAAATGATTCTTAAAT+AGG | - | chr5.4:65943649-65943668 | MS.gene94216:intron | 20.0% |
| !! | TAAATTAGATGACTAAAACA+TGG | - | chr5.4:65943969-65943988 | MS.gene94216:intron | 20.0% |
| !! | TAGTTCACAAAAAATAAAGT+AGG | - | chr5.4:65942605-65942624 | MS.gene94216:intron | 20.0% |
| !! | TGAAAATGATTCTTAAATAG+GGG | - | chr5.4:65943651-65943670 | MS.gene94216:intron | 20.0% |
| !! | TGTAATCATAAATATTGTGT+CGG | + | chr5.4:65941153-65941172 | None:intergenic | 20.0% |
| !! | TTAATATTTCTCGTTTGATA+AGG | - | chr5.4:65942860-65942879 | MS.gene94216:intron | 20.0% |
| !!! | AAATATGGAGATCATATTTT+GGG | - | chr5.4:65943469-65943488 | MS.gene94216:intron | 20.0% |
| !!! | AAATGGGTTAAATATGTTTT+TGG | + | chr5.4:65941981-65942000 | None:intergenic | 20.0% |
| !!! | AAGTGAAGATCAATAATTTT+TGG | + | chr5.4:65941582-65941601 | None:intergenic | 20.0% |
| !!! | AAGTTGAAGGAAAATTTTAA+AGG | - | chr5.4:65941922-65941941 | MS.gene94216:intron | 20.0% |
| !!! | ACTTCATAATGTTTTGTAAA+AGG | + | chr5.4:65943097-65943116 | None:intergenic | 20.0% |
| !!! | AGTTGAAGGAAAATTTTAAA+GGG | - | chr5.4:65941923-65941942 | MS.gene94216:intron | 20.0% |
| !!! | GTAGTGATAGAAAATTTTAT+AGG | - | chr5.4:65941893-65941912 | MS.gene94216:intron | 20.0% |
| !!! | TAAATATGGAGATCATATTT+TGG | - | chr5.4:65943468-65943487 | MS.gene94216:intron | 20.0% |
| !!! | TATCTACGTTTTTCTTATTT+TGG | + | chr5.4:65942141-65942160 | None:intergenic | 20.0% |
| !!! | TTGAATTAAGTTTAGTTTCA+CGG | + | chr5.4:65943041-65943060 | None:intergenic | 20.0% |
| !!! | TTTTAAATTATTATCGGTGT+CGG | + | chr5.4:65940281-65940300 | None:intergenic | 20.0% |
| ! | AAAGAAAAGGAAATTAACCT+AGG | + | chr5.4:65940402-65940421 | None:intergenic | 25.0% |
| ! | AAAGAAACACTAGAACTAAA+TGG | - | chr5.4:65942972-65942991 | MS.gene94216:intron | 25.0% |
| ! | AATGAAAATTTCGTGTTTGT+AGG | + | chr5.4:65941463-65941482 | None:intergenic | 25.0% |
| ! | ACAATTGAGTCTAAAAGAAA+AGG | + | chr5.4:65940415-65940434 | None:intergenic | 25.0% |
| ! | AGTTATGAAATTGAATGCAA+TGG | + | chr5.4:65940513-65940532 | None:intergenic | 25.0% |
| ! | ATTAACAATTAATTACCTGG+TGG | + | chr5.4:65940208-65940227 | None:intergenic | 25.0% |
| ! | ATTTCTTAATCAATGTGACA+AGG | + | chr5.4:65940145-65940164 | None:intergenic | 25.0% |
| ! | CAGTAAAAACATTCTTCAAA+AGG | + | chr5.4:65942285-65942304 | None:intergenic | 25.0% |
| ! | GAAAATGATTCTTAAATAGG+GGG | - | chr5.4:65943652-65943671 | MS.gene94216:intron | 25.0% |
| ! | GGAATTGAGATGTTTAAATA+TGG | - | chr5.4:65943454-65943473 | MS.gene94216:intron | 25.0% |
| ! | TCAACAAAAGTTAATGTATC+TGG | + | chr5.4:65940708-65940727 | None:intergenic | 25.0% |
| ! | TCAATTGGTTAGAGTTAAAA+GGG | + | chr5.4:65942931-65942950 | None:intergenic | 25.0% |
| ! | TCATATATATCAAGGAGTTA+AGG | + | chr5.4:65944058-65944077 | None:intergenic | 25.0% |
| ! | TGTTAATTTCCTAATCTTTG+AGG | - | chr5.4:65940432-65940451 | MS.gene94216:intron | 25.0% |
| ! | TTCAATTGGTTAGAGTTAAA+AGG | + | chr5.4:65942932-65942951 | None:intergenic | 25.0% |
| !! | ATTGATTGATTTACTCATAG+AGG | - | chr5.4:65944320-65944339 | MS.gene94216:CDS | 25.0% |
| !! | GACGTTTTTATAAACAAGTT+AGG | + | chr5.4:65942106-65942125 | None:intergenic | 25.0% |
| !! | TACATATGAGTTTGCTTTAT+AGG | + | chr5.4:65941614-65941633 | None:intergenic | 25.0% |
| !! | TGATTTGAGATCAAACAATT+TGG | - | chr5.4:65943725-65943744 | MS.gene94216:intron | 25.0% |
| !!! | AAGTTTTGATTTAGGAAGTA+CGG | - | chr5.4:65941081-65941100 | MS.gene94216:CDS | 25.0% |
| !!! | CTTTTGAAGAATGTTTTTAC+TGG | - | chr5.4:65942283-65942302 | MS.gene94216:intron | 25.0% |
| !!! | GGTAATTTTTTTCCCATAAA+CGG | - | chr5.4:65941044-65941063 | MS.gene94216:intron | 25.0% |
| !!! | GTTGAAGGAAAATTTTAAAG+GGG | - | chr5.4:65941924-65941943 | MS.gene94216:intron | 25.0% |
| !!! | TATGACTACTTTTATGTGTA+TGG | - | chr5.4:65942440-65942459 | MS.gene94216:intron | 25.0% |
| !!! | TGAAGATCAATAATTTTTGG+AGG | + | chr5.4:65941579-65941598 | None:intergenic | 25.0% |
| AAACTTGAGAATACCGTTAT+GGG | + | chr5.4:65941276-65941295 | None:intergenic | 30.0% | |
| AAATCCATTCTTGAGAAAAC+TGG | + | chr5.4:65944438-65944457 | None:intergenic | 30.0% | |
| AAGGGGCTAAAATAAAAAGT+TGG | - | chr5.4:65941941-65941960 | MS.gene94216:intron | 30.0% | |
| AATGTTTCCATGATTGAAGT+CGG | - | chr5.4:65940776-65940795 | MS.gene94216:intron | 30.0% | |
| AATTTCAAACGTACCGTTTA+TGG | + | chr5.4:65941060-65941079 | None:intergenic | 30.0% | |
| ACATAAACCTACAACTCTAA+GGG | + | chr5.4:65943686-65943705 | None:intergenic | 30.0% | |
| ACTAAGCATCATGTTTGATA+AGG | - | chr5.4:65943122-65943141 | MS.gene94216:intron | 30.0% | |
| ACTTGTAACTTCTTATAGCA+AGG | - | chr5.4:65943806-65943825 | MS.gene94216:intron | 30.0% | |
| ATACCTTGATGAAATTACGT+TGG | + | chr5.4:65943555-65943574 | None:intergenic | 30.0% | |
| ATCAAATCCACCTTATGTTT+GGG | - | chr5.4:65944097-65944116 | MS.gene94216:intron | 30.0% | |
| ATGAAAAATACTTGAGGCTT+TGG | + | chr5.4:65943329-65943348 | None:intergenic | 30.0% | |
| ATGCTTATGGAAATGAGAAA+TGG | - | chr5.4:65940111-65940130 | MS.gene94216:intron | 30.0% | |
| ATGTATGCTAGCATAAACAA+TGG | + | chr5.4:65940596-65940615 | None:intergenic | 30.0% | |
| ATTTCAAACGTACCGTTTAT+GGG | + | chr5.4:65941059-65941078 | None:intergenic | 30.0% | |
| CAAATCCCAATTCTTTATGA+TGG | + | chr5.4:65943629-65943648 | None:intergenic | 30.0% | |
| CACGTGAATGTACATATTAT+TGG | + | chr5.4:65942370-65942389 | None:intergenic | 30.0% | |
| CATCATAAAGAATTGGGATT+TGG | - | chr5.4:65943627-65943646 | MS.gene94216:intron | 30.0% | |
| CTTAGATCAAGATTGACAAA+TGG | - | chr5.4:65940474-65940493 | MS.gene94216:intron | 30.0% | |
| GAAATGTGTGAAGAAATGTA+AGG | - | chr5.4:65940563-65940582 | MS.gene94216:intron | 30.0% | |
| TAAACTTGAGAATACCGTTA+TGG | + | chr5.4:65941277-65941296 | None:intergenic | 30.0% | |
| TAAGAGACAAACAATTTGAG+AGG | + | chr5.4:65942906-65942925 | None:intergenic | 30.0% | |
| TACATAAACCTACAACTCTA+AGG | + | chr5.4:65943687-65943706 | None:intergenic | 30.0% | |
| TACATTGTATATGACCTTTG+CGG | - | chr5.4:65944238-65944257 | MS.gene94216:CDS | 30.0% | |
| TCATTAAATTGCCATGATTG+AGG | + | chr5.4:65943000-65943019 | None:intergenic | 30.0% | |
| TGGAACCATCATAAAGAATT+GGG | - | chr5.4:65943621-65943640 | MS.gene94216:intron | 30.0% | |
| TTAAAATGTCTCACATGATC+TGG | + | chr5.4:65941002-65941021 | None:intergenic | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | - | chr5.4:65941909-65941928 | MS.gene94216:intron | 30.0% | |
| TTCTATAATCGAATGTCACA+GGG | - | chr5.4:65943266-65943285 | MS.gene94216:intron | 30.0% | |
| TTCTTATAAACAAGATCGGT+GGG | - | chr5.4:65940736-65940755 | MS.gene94216:intron | 30.0% | |
| TTGAATACTGTCCAAACATA+TGG | + | chr5.4:65942198-65942217 | None:intergenic | 30.0% | |
| TTGACAAATGGTTTATGACT+TGG | - | chr5.4:65940486-65940505 | MS.gene94216:intron | 30.0% | |
| TTGGAACCATCATAAAGAAT+TGG | - | chr5.4:65943620-65943639 | MS.gene94216:intron | 30.0% | |
| TTTCTATAATCGAATGTCAC+AGG | - | chr5.4:65943265-65943284 | MS.gene94216:intron | 30.0% | |
| TTTCTTATAAACAAGATCGG+TGG | - | chr5.4:65940735-65940754 | MS.gene94216:intron | 30.0% | |
| ! | AAAATCCTTGGCATTTGTTT+TGG | - | chr5.4:65940182-65940201 | MS.gene94216:intron | 30.0% |
| ! | ATATGAGTTTGCTTTATAGG+AGG | + | chr5.4:65941611-65941630 | None:intergenic | 30.0% |
| ! | ATCATGTTTGATAAGGTACT+TGG | - | chr5.4:65943129-65943148 | MS.gene94216:intron | 30.0% |
| ! | ATGAGTTGAGTCTTTATGAT+GGG | - | chr5.4:65940063-65940082 | MS.gene94216:intron | 30.0% |
| ! | CTAGTATTTCTCATTTGCTA+GGG | - | chr5.4:65942791-65942810 | MS.gene94216:intron | 30.0% |
| ! | GTAAAGTCTTTTTCCCATAA+CGG | - | chr5.4:65941260-65941279 | MS.gene94216:intron | 30.0% |
| ! | TATGAGTTTGCTTTATAGGA+GGG | + | chr5.4:65941610-65941629 | None:intergenic | 30.0% |
| ! | TCGATTATAGAAAGCTTTGT+TGG | + | chr5.4:65943258-65943277 | None:intergenic | 30.0% |
| ! | TTCTAGTGTTTCTTTGTTTG+CGG | + | chr5.4:65942967-65942986 | None:intergenic | 30.0% |
| !! | AGAATATCTTTAGAGTACTC+CGG | + | chr5.4:65943508-65943527 | None:intergenic | 30.0% |
| !! | GATCATATTTTGGGAATTCA+AGG | - | chr5.4:65943478-65943497 | MS.gene94216:intron | 30.0% |
| !! | TCAGCAAAAGTTGATGTATT+TGG | - | chr5.4:65940668-65940687 | MS.gene94216:intron | 30.0% |
| ACTAAATGGTTCCTCAATCA+TGG | - | chr5.4:65942986-65943005 | MS.gene94216:intron | 35.0% | |
| ATAGATTCATCACCTAAGTG+AGG | + | chr5.4:65942393-65942412 | None:intergenic | 35.0% | |
| ATCTAAATCGACAGAAGAGA+TGG | + | chr5.4:65943773-65943792 | None:intergenic | 35.0% | |
| ATCTTCTATGCCTATGTAGT+TGG | - | chr5.4:65944272-65944291 | MS.gene94216:CDS | 35.0% | |
| ATGAAACACAAACACAGACA+CGG | + | chr5.4:65941231-65941250 | None:intergenic | 35.0% | |
| ATGTGATAAAGATGCATGGA+GGG | - | chr5.4:65939952-65939971 | MS.gene94216:CDS | 35.0% | |
| ATGTTTCCATGATTGAAGTC+GGG | - | chr5.4:65940777-65940796 | MS.gene94216:intron | 35.0% | |
| CAATCAAAGCCTCAAAGATT+AGG | + | chr5.4:65940444-65940463 | None:intergenic | 35.0% | |
| CATCCAACGTAATTTCATCA+AGG | - | chr5.4:65943549-65943568 | MS.gene94216:intron | 35.0% | |
| GAAGGGAAACAAATATGTGA+TGG | + | chr5.4:65943225-65943244 | None:intergenic | 35.0% | |
| GACATGTACAAAGTTTCATG+TGG | - | chr5.4:65940023-65940042 | MS.gene94216:intron | 35.0% | |
| GAGTATGTGATAAAGATGCA+TGG | - | chr5.4:65939948-65939967 | MS.gene94216:CDS | 35.0% | |
| GATCAAATCCACCTTATGTT+TGG | - | chr5.4:65944096-65944115 | MS.gene94216:intron | 35.0% | |
| GCTAGTATTTCTCATTTGCT+AGG | - | chr5.4:65942790-65942809 | MS.gene94216:intron | 35.0% | |
| GCTTGAAACTTAAAACCCTA+AGG | + | chr5.4:65942525-65942544 | None:intergenic | 35.0% | |
| GGTATTCTTGAAAATGTTGG+AGG | - | chr5.4:65939983-65940002 | MS.gene94216:CDS | 35.0% | |
| GTCCATGTAGAATATAGACT+GGG | - | chr5.4:65940825-65940844 | MS.gene94216:CDS | 35.0% | |
| GTGAAGAAATGTAAGGCTTT+AGG | - | chr5.4:65940570-65940589 | MS.gene94216:intron | 35.0% | |
| TAATGCTCACAAGAAGACAA+AGG | + | chr5.4:65942033-65942052 | None:intergenic | 35.0% | |
| TAGAGGATGTTTCAAATGTC+AGG | - | chr5.4:65944337-65944356 | MS.gene94216:CDS | 35.0% | |
| TATGTGATAAAGATGCATGG+AGG | - | chr5.4:65939951-65939970 | MS.gene94216:CDS | 35.0% | |
| TCCATGTAGAATATAGACTG+GGG | - | chr5.4:65940826-65940845 | MS.gene94216:CDS | 35.0% | |
| TCTTCTATGCCTATGTAGTT+GGG | - | chr5.4:65944273-65944292 | MS.gene94216:CDS | 35.0% | |
| TGTCCATGTAGAATATAGAC+TGG | - | chr5.4:65940824-65940843 | MS.gene94216:CDS | 35.0% | |
| TGTCTGTGTTTGTGTTTCAT+AGG | - | chr5.4:65941231-65941250 | MS.gene94216:intron | 35.0% | |
| TTGTTGGAAGATCAAGAGAA+GGG | + | chr5.4:65943242-65943261 | None:intergenic | 35.0% | |
| TTTGCTAGGGTTTGAATTCA+AGG | - | chr5.4:65942804-65942823 | MS.gene94216:intron | 35.0% | |
| TTTGTTGGAAGATCAAGAGA+AGG | + | chr5.4:65943243-65943262 | None:intergenic | 35.0% | |
| ! | CATAAATATTGTGTCGGTGT+CGG | + | chr5.4:65941147-65941166 | None:intergenic | 35.0% |
| ! | GATGAGTTGAGTCTTTATGA+TGG | - | chr5.4:65940062-65940081 | MS.gene94216:intron | 35.0% |
| ! | TGGGGTATTCTTGAAAATGT+TGG | - | chr5.4:65939980-65939999 | MS.gene94216:CDS | 35.0% |
| ! | TTAAGTTATAGGTGTCGTGT+CGG | - | chr5.4:65940310-65940329 | MS.gene94216:intron | 35.0% |
| AGACTCAACTCATCATCCTT+AGG | + | chr5.4:65940056-65940075 | None:intergenic | 40.0% | |
| AGTCACAACTAAGCTAAGTG+AGG | + | chr5.4:65942341-65942360 | None:intergenic | 40.0% | |
| AGTTAGTGTCCCAACTACAT+AGG | + | chr5.4:65944285-65944304 | None:intergenic | 40.0% | |
| ATGTTTGGCCTAGTTAGACA+AGG | - | chr5.4:65942482-65942501 | MS.gene94216:intron | 40.0% | |
| ATTGCTAGGTCAGATAAGAC+TGG | - | chr5.4:65943433-65943452 | MS.gene94216:intron | 40.0% | |
| CACATATCCCTTAGAGTTGT+AGG | - | chr5.4:65943676-65943695 | MS.gene94216:intron | 40.0% | |
| CTTAGCTTAGTTGTGACTTG+TGG | - | chr5.4:65942343-65942362 | MS.gene94216:intron | 40.0% | |
| GATACAAGAGTTACCTGCTA+AGG | - | chr5.4:65943402-65943421 | MS.gene94216:intron | 40.0% | |
| GATTAGGTGTGTCCTAGTAT+CGG | + | chr5.4:65940361-65940380 | None:intergenic | 40.0% | |
| GGAGGAAGAAAATGAGACAT+GGG | - | chr5.4:65940001-65940020 | MS.gene94216:intron | 40.0% | |
| GGTAGTTGCAATGATGCTTA+TGG | - | chr5.4:65940098-65940117 | MS.gene94216:intron | 40.0% | |
| TAGGCCAAACATTATCCCAA+AGG | + | chr5.4:65942474-65942493 | None:intergenic | 40.0% | |
| TAGTTAGACAAGGTCAGTGT+GGG | - | chr5.4:65942492-65942511 | MS.gene94216:intron | 40.0% | |
| TATAGTAAGCCACTAGGAAG+TGG | + | chr5.4:65943835-65943854 | None:intergenic | 40.0% | |
| TCATGCTATAGTAAGCCACT+AGG | + | chr5.4:65943841-65943860 | None:intergenic | 40.0% | |
| TCCATGCAGACAAAAATCCT+TGG | - | chr5.4:65940170-65940189 | MS.gene94216:intron | 40.0% | |
| TGGAGGAAGAAAATGAGACA+TGG | - | chr5.4:65940000-65940019 | MS.gene94216:intron | 40.0% | |
| TGTTTCCATGATTGAAGTCG+GGG | - | chr5.4:65940778-65940797 | MS.gene94216:intron | 40.0% | |
| TTCATGTGGAGAGTTTCCTA+AGG | - | chr5.4:65940037-65940056 | MS.gene94216:intron | 40.0% | |
| TTTGGGAATTCAAGGTCATC+CGG | - | chr5.4:65943486-65943505 | MS.gene94216:intron | 40.0% | |
| ! | AGTGTTTCTTTGTTTGCGGT+AGG | + | chr5.4:65942963-65942982 | None:intergenic | 40.0% |
| ! | TAGGAAGCATGAACACTCTT+CGG | + | chr5.4:65940383-65940402 | None:intergenic | 40.0% |
| ! | TGCACCAGTTTTCTCAAGAA+TGG | - | chr5.4:65944431-65944450 | MS.gene94216:CDS | 40.0% |
| ! | TTCTTTGTTTGCGGTAGGTA+GGG | + | chr5.4:65942958-65942977 | None:intergenic | 40.0% |
| ! | TTTCTTTGTTTGCGGTAGGT+AGG | + | chr5.4:65942959-65942978 | None:intergenic | 40.0% |
| !! | AAGCTTTTGCTATAGGAGCA+AGG | - | chr5.4:65944360-65944379 | MS.gene94216:CDS | 40.0% |
| !! | AGCTTTTGCTATAGGAGCAA+GGG | - | chr5.4:65944361-65944380 | MS.gene94216:CDS | 40.0% |
| !! | GCTACCTTTGGGATAATGTT+TGG | - | chr5.4:65942467-65942486 | MS.gene94216:intron | 40.0% |
| !! | TATGATGGGTTTGTGATCAC+TGG | - | chr5.4:65940077-65940096 | MS.gene94216:intron | 40.0% |
| !! | TGTATGGACTTGCTACCTTT+GGG | - | chr5.4:65942456-65942475 | MS.gene94216:intron | 40.0% |
| !! | TGTCAGGAAGCTTTTGCTAT+AGG | - | chr5.4:65944353-65944372 | MS.gene94216:CDS | 40.0% |
| !!! | AAGATGCATGGAGGGTATTT+TGG | - | chr5.4:65939960-65939979 | MS.gene94216:CDS | 40.0% |
| !!! | AGATGCATGGAGGGTATTTT+GGG | - | chr5.4:65939961-65939980 | MS.gene94216:CDS | 40.0% |
| AATCGAATGTCACAGGGATG+AGG | - | chr5.4:65943272-65943291 | MS.gene94216:intron | 45.0% | |
| AGTTAGACAAGGTCAGTGTG+GGG | - | chr5.4:65942493-65942512 | MS.gene94216:intron | 45.0% | |
| CACACTGACCTTGTCTAACT+AGG | + | chr5.4:65942493-65942512 | None:intergenic | 45.0% | |
| CTAACTCGTCGCCATATGTT+TGG | - | chr5.4:65942184-65942203 | MS.gene94216:intron | 45.0% | |
| CTAAGGCAGAGGTAATTGCT+AGG | - | chr5.4:65943419-65943438 | MS.gene94216:intron | 45.0% | |
| CTAGTTAGACAAGGTCAGTG+TGG | - | chr5.4:65942491-65942510 | MS.gene94216:intron | 45.0% | |
| CTCTTCCAGGCATTTGTATC+TGG | + | chr5.4:65944407-65944426 | None:intergenic | 45.0% | |
| GCATGAACACTCTTCGGATT+AGG | + | chr5.4:65940377-65940396 | None:intergenic | 45.0% | |
| GCCCCAGTCTATATTCTACA+TGG | + | chr5.4:65940830-65940849 | None:intergenic | 45.0% | |
| GGTAGGTAGGGTAGTTCAAT+TGG | + | chr5.4:65942946-65942965 | None:intergenic | 45.0% | |
| GTCAGTGTCTGTGTCGTATT+CGG | - | chr5.4:65941202-65941221 | MS.gene94216:intron | 45.0% | |
| GTTAGTGTCTGTGTCGTGTT+CGG | + | chr5.4:65940255-65940274 | None:intergenic | 45.0% | |
| GTTTCCATGATTGAAGTCGG+GGG | - | chr5.4:65940779-65940798 | MS.gene94216:intron | 45.0% | |
| TACATTCACGTGCCTCACTT+AGG | - | chr5.4:65942378-65942397 | MS.gene94216:intron | 45.0% | |
| TAGAGCCAGATACAAATGCC+TGG | - | chr5.4:65944399-65944418 | MS.gene94216:CDS | 45.0% | |
| TCGTGTCTACGTTTCTGTGT+AGG | + | chr5.4:65944128-65944147 | None:intergenic | 45.0% | |
| TTTCCATGATTGAAGTCGGG+GGG | - | chr5.4:65940780-65940799 | MS.gene94216:intron | 45.0% | |
| ! | GCCAAGGATTTTTGTCTGCA+TGG | + | chr5.4:65940174-65940193 | None:intergenic | 45.0% |
| ! | TGGTGTGTTGTTATGTGCTG+AGG | - | chr5.4:65939920-65939939 | MS.gene94216:CDS | 45.0% |
| !! | GAAGAGTGTTCATGCTTCCT+AGG | - | chr5.4:65940382-65940401 | MS.gene94216:intron | 45.0% |
| !! | GTAGGACTAGCCCAAACATA+AGG | + | chr5.4:65944110-65944129 | None:intergenic | 45.0% |
| !! | GTGTATGGACTTGCTACCTT+TGG | - | chr5.4:65942455-65942474 | MS.gene94216:intron | 45.0% |
| !!! | GATGCATGGAGGGTATTTTG+GGG | - | chr5.4:65939962-65939981 | MS.gene94216:CDS | 45.0% |
| !! | GAAAAATATATAATAATATA+AGG | - | chr5.4:65941663-65941682 | MS.gene94216:intron | 5.0% |
| !!! | AAAAATTCTAAATTTTTTTT+CGG | - | chr5.4:65941789-65941808 | MS.gene94216:intron | 5.0% |
| !!! | AATATGAATTTTTATATTTT+TGG | - | chr5.4:65941731-65941750 | MS.gene94216:intron | 5.0% |
| !!! | TAAAAAATTCTAATTTTTTT+TGG | + | chr5.4:65941695-65941714 | None:intergenic | 5.0% |
| !!! | TGTATTTTTTAAATTATTAT+CGG | + | chr5.4:65940287-65940306 | None:intergenic | 5.0% |
| AAGTGTGTCTCGACATGCGT+CGG | - | chr5.4:65941118-65941137 | MS.gene94216:CDS | 50.0% | |
| ACACCAATGTCCCAACCAGT+AGG | + | chr5.4:65943186-65943205 | None:intergenic | 50.0% | |
| ACTGGTGCAAAGTCTCTTCC+AGG | + | chr5.4:65944420-65944439 | None:intergenic | 50.0% | |
| AGAGTTACCTGCTAAGGCAG+AGG | - | chr5.4:65943408-65943427 | MS.gene94216:intron | 50.0% | |
| CATGACGTGTGTCCGATACT+AGG | - | chr5.4:65940346-65940365 | MS.gene94216:intron | 50.0% | |
| GATCACATGTGATGCCGCAA+AGG | + | chr5.4:65944255-65944274 | None:intergenic | 50.0% | |
| GCAATTACCTCTGCCTTAGC+AGG | + | chr5.4:65943418-65943437 | None:intergenic | 50.0% | |
| GGTGGCCAAAACAAATGCCA+AGG | + | chr5.4:65940190-65940209 | None:intergenic | 50.0% | |
| TATCCCCCCGACTTCAATCA+TGG | + | chr5.4:65940786-65940805 | None:intergenic | 50.0% | |
| TGCTATAGGAGCAAGGGAGA+GGG | - | chr5.4:65944367-65944386 | MS.gene94216:CDS | 50.0% | |
| TTGCTATAGGAGCAAGGGAG+AGG | - | chr5.4:65944366-65944385 | MS.gene94216:CDS | 50.0% | |
| ! | AAGGTACTTGGCCGTGCATT+GGG | - | chr5.4:65943141-65943160 | MS.gene94216:intron | 50.0% |
| ! | GCAAGGTATCCACTTCCTAG+TGG | - | chr5.4:65943823-65943842 | MS.gene94216:intron | 50.0% |
| ! | TAAGGTACTTGGCCGTGCAT+TGG | - | chr5.4:65943140-65943159 | MS.gene94216:intron | 50.0% |
| ! | TCTCCTACTGGTTGGGACAT+TGG | - | chr5.4:65943180-65943199 | MS.gene94216:intron | 50.0% |
| !! | GGACTAGCCCAAACATAAGG+TGG | + | chr5.4:65944107-65944126 | None:intergenic | 50.0% |
| !!! | TGGCATTTGTTTTGGCCACC+AGG | - | chr5.4:65940190-65940209 | MS.gene94216:intron | 50.0% |
| CCACCTTTCCTCCCAATGCA+CGG | + | chr5.4:65943155-65943174 | None:intergenic | 55.0% | |
| CGTGCATTGGGAGGAAAGGT+GGG | - | chr5.4:65943153-65943172 | MS.gene94216:intron | 55.0% | |
| AAGGTGGGTCGCTCTCCTAC+TGG | - | chr5.4:65943168-65943187 | MS.gene94216:intron | 60.0% | |
| AGTGTGGGGCGCATGCCTTA+GGG | - | chr5.4:65942507-65942526 | MS.gene94216:intron | 60.0% | |
| CCGTGCATTGGGAGGAAAGG+TGG | - | chr5.4:65943152-65943171 | MS.gene94216:intron | 60.0% | |
| GTACTTGGCCGTGCATTGGG+AGG | - | chr5.4:65943144-65943163 | MS.gene94216:intron | 60.0% | |
| TGGCCGTGCATTGGGAGGAA+AGG | - | chr5.4:65943149-65943168 | MS.gene94216:intron | 60.0% | |
| TGGGTCGCTCTCCTACTGGT+TGG | - | chr5.4:65943172-65943191 | MS.gene94216:intron | 60.0% | |
| ! | GGGTCGCTCTCCTACTGGTT+GGG | - | chr5.4:65943173-65943192 | MS.gene94216:intron | 60.0% |
| CAGTGTGGGGCGCATGCCTT+AGG | - | chr5.4:65942506-65942525 | MS.gene94216:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 65939903 | 65944460 | 65939903 | ID=MS.gene94216 |
| chr5.4 | mRNA | 65939903 | 65944460 | 65939903 | ID=MS.gene94216.t1;Parent=MS.gene94216 |
| chr5.4 | exon | 65944152 | 65944460 | 65944152 | ID=MS.gene94216.t1.exon1;Parent=MS.gene94216.t1 |
| chr5.4 | CDS | 65944152 | 65944460 | 65944152 | ID=cds.MS.gene94216.t1;Parent=MS.gene94216.t1 |
| chr5.4 | exon | 65941070 | 65941219 | 65941070 | ID=MS.gene94216.t1.exon2;Parent=MS.gene94216.t1 |
| chr5.4 | CDS | 65941070 | 65941219 | 65941070 | ID=cds.MS.gene94216.t1;Parent=MS.gene94216.t1 |
| chr5.4 | exon | 65940793 | 65940960 | 65940793 | ID=MS.gene94216.t1.exon3;Parent=MS.gene94216.t1 |
| chr5.4 | CDS | 65940793 | 65940960 | 65940793 | ID=cds.MS.gene94216.t1;Parent=MS.gene94216.t1 |
| chr5.4 | exon | 65939903 | 65940004 | 65939903 | ID=MS.gene94216.t1.exon4;Parent=MS.gene94216.t1 |
| chr5.4 | CDS | 65939903 | 65940004 | 65939903 | ID=cds.MS.gene94216.t1;Parent=MS.gene94216.t1 |
| Gene Sequence |
| Protein sequence |
