Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028495.t1 | XP_003608377.2 | 97.7 | 264 | 6 | 0 | 1 | 264 | 1 | 264 | 1.00E-149 | 539.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028495.t1 | O82225 | 51.0 | 247 | 119 | 1 | 4 | 248 | 1 | 247 | 4.7e-71 | 269.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028495.t1 | G7JV26 | 97.7 | 264 | 6 | 0 | 1 | 264 | 1 | 264 | 7.4e-150 | 539.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90232 | MS.gene028495 | PPI |
| MS.gene94216 | MS.gene028495 | PPI |
| MS.gene76089 | MS.gene028495 | PPI |
| MS.gene028495 | MS.gene01224 | PPI |
| MS.gene053590 | MS.gene028495 | PPI |
| MS.gene068013 | MS.gene028495 | PPI |
| MS.gene028495 | MS.gene02208 | PPI |
| MS.gene002251 | MS.gene028495 | PPI |
| MS.gene071221 | MS.gene028495 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028495.t1 | MTR_4g093250 | 97.727 | 264 | 6 | 0 | 1 | 264 | 1 | 264 | 0.0 | 533 |
| MS.gene028495.t1 | MTR_5g083210 | 72.289 | 249 | 65 | 2 | 1 | 249 | 1 | 245 | 1.36e-133 | 377 |
| MS.gene028495.t1 | MTR_2g009720 | 60.000 | 240 | 93 | 1 | 9 | 248 | 8 | 244 | 2.55e-102 | 298 |
| MS.gene028495.t1 | MTR_2g009720 | 59.903 | 207 | 80 | 1 | 9 | 215 | 8 | 211 | 3.85e-88 | 262 |
| MS.gene028495.t1 | MTR_5g078650 | 58.000 | 50 | 18 | 1 | 42 | 91 | 54 | 100 | 7.66e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028495.t1 | AT2G23970 | 51.012 | 247 | 119 | 1 | 4 | 248 | 1 | 247 | 5.65e-91 | 270 |
| MS.gene028495.t1 | AT4G30550 | 46.559 | 247 | 129 | 1 | 4 | 247 | 3 | 249 | 1.03e-82 | 248 |
| MS.gene028495.t1 | AT4G30540 | 48.980 | 245 | 125 | 0 | 4 | 248 | 1 | 245 | 6.02e-81 | 244 |
| MS.gene028495.t1 | AT2G23960 | 44.672 | 244 | 133 | 1 | 5 | 246 | 1 | 244 | 1.86e-75 | 230 |
| MS.gene028495.t1 | AT4G30530 | 45.041 | 242 | 131 | 1 | 9 | 248 | 5 | 246 | 1.10e-74 | 228 |
| MS.gene028495.t1 | AT2G23960 | 46.635 | 208 | 109 | 1 | 5 | 210 | 1 | 208 | 2.46e-67 | 208 |
Find 77 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATGTACGGAGGGTATTT+TGG | 0.159436 | 4.1:-20205744 | MS.gene028495:CDS |
| TAGGGAGTGGGAAGAGATTT+GGG | 0.235069 | 4.1:-20205803 | MS.gene028495:CDS |
| CTCTTCCATGCCTCCTTATC+TGG | 0.241065 | 4.1:+20202568 | None:intergenic |
| TAGATATGGAGATCACATTA+TGG | 0.306527 | 4.1:-20202831 | MS.gene028495:CDS |
| GTAGGGAGTGGGAAGAGATT+TGG | 0.311768 | 4.1:-20205804 | MS.gene028495:CDS |
| TGGCATTTGCTTTGGTCATC+AGG | 0.316497 | 4.1:-20205514 | MS.gene028495:intron |
| GGAATAGAAAATATAAATAT+TGG | 0.322855 | 4.1:-20202502 | MS.gene028495:CDS |
| TGTTAATTTGATTAGATACT+TGG | 0.341295 | 4.1:-20203208 | MS.gene028495:intron |
| ATCCCTGTGGCATTGAATAA+TGG | 0.342555 | 4.1:+20203063 | None:intergenic |
| GGCTGAAGTGATTGCTAAAT+CGG | 0.357904 | 4.1:-20202876 | MS.gene028495:CDS |
| TGAAAGCTGGGATGTTTATA+AGG | 0.360753 | 4.1:-20205691 | MS.gene028495:CDS |
| TAGATACTTGGCCGTGCAAT+TGG | 0.364461 | 4.1:-20203196 | MS.gene028495:CDS |
| GGAATTGAGATGTTTAGATA+TGG | 0.367188 | 4.1:-20202845 | MS.gene028495:CDS |
| AAAATCCTTGGCATTTGCTT+TGG | 0.382494 | 4.1:-20205522 | MS.gene028495:CDS |
| AGATTCAATTCATCATCCTT+TGG | 0.389173 | 4.1:+20205651 | None:intergenic |
| AGATATGGAGATCACATTAT+GGG | 0.414653 | 4.1:-20202830 | MS.gene028495:CDS |
| GGTCGTTATTGTGAAAGAAA+TGG | 0.428460 | 4.1:-20202523 | MS.gene028495:CDS |
| TGGAGGAAGAAGGTGAAAGC+TGG | 0.433224 | 4.1:-20205704 | MS.gene028495:CDS |
| TTTCCATTATTCAATGCCAC+AGG | 0.461141 | 4.1:-20203066 | MS.gene028495:CDS |
| TGGAGAAAATGGTAGGGAGT+GGG | 0.479980 | 4.1:-20205815 | MS.gene028495:CDS |
| GACATGAACAAGAAAATCCT+TGG | 0.480295 | 4.1:-20205534 | MS.gene028495:CDS |
| AAGGTGACTCGATCTCCAAC+TGG | 0.484187 | 4.1:-20203169 | MS.gene028495:CDS |
| TGGGGTATTCGTGAGAATGT+TGG | 0.487935 | 4.1:-20205724 | MS.gene028495:CDS |
| GATCACATTATGGGAATTCA+AGG | 0.489176 | 4.1:-20202821 | MS.gene028495:CDS |
| TGAAGGAGAAGGCTGGTATG+TGG | 0.491137 | 4.1:-20202594 | MS.gene028495:CDS |
| TGAATAATGGAAAGACTCGT+TGG | 0.502242 | 4.1:+20203076 | None:intergenic |
| GCAATCACTTCAGCCTTGGC+AGG | 0.507796 | 4.1:+20202884 | None:intergenic |
| TGCTATGAGATTGAAGGAGA+AGG | 0.513622 | 4.1:-20202605 | MS.gene028495:CDS |
| GACAAAGGAGATGGCAAAGA+GGG | 0.513633 | 4.1:+20203112 | None:intergenic |
| TTAAGGATGGAGAAAATGGT+AGG | 0.514388 | 4.1:-20205822 | None:intergenic |
| TTTAGCAATCACTTCAGCCT+TGG | 0.516942 | 4.1:+20202880 | None:intergenic |
| AGGGTGATAATGTTATGTTT+CGG | 0.519404 | 4.1:+20203131 | None:intergenic |
| ATACTTGGCCGTGCAATTGG+AGG | 0.519944 | 4.1:-20203193 | MS.gene028495:CDS |
| GACTCGATCTCCAACTGGAT+GGG | 0.522832 | 4.1:-20203164 | MS.gene028495:CDS |
| GTGAGAATGTTGGAGGAAGA+AGG | 0.524478 | 4.1:-20205714 | MS.gene028495:CDS |
| TGGTATGTGGGAGCCAGATA+AGG | 0.526816 | 4.1:-20202581 | MS.gene028495:CDS |
| ATTGCTAAATCGGATAAGAC+TGG | 0.535654 | 4.1:-20202866 | MS.gene028495:CDS |
| ATGGAGAAAATGGTAGGGAG+TGG | 0.538240 | 4.1:-20205816 | MS.gene028495:CDS |
| TATTCAATGCCACAGGGATG+AGG | 0.540762 | 4.1:-20203059 | MS.gene028495:intron |
| TCTCCAACTGGATGGGACAT+TGG | 0.548672 | 4.1:-20203157 | MS.gene028495:CDS |
| GATGAATTGAATCTGTATGA+TGG | 0.549776 | 4.1:-20205642 | MS.gene028495:CDS |
| TGAAATTTCGCTGAATAAGA+CGG | 0.555005 | 4.1:+20202756 | None:intergenic |
| ATAGAAAATATAAATATTGG+TGG | 0.558147 | 4.1:-20202499 | MS.gene028495:CDS |
| TGACTCGATCTCCAACTGGA+TGG | 0.559221 | 4.1:-20203165 | MS.gene028495:CDS |
| GCTAAGAGAGCTACCTGCCA+AGG | 0.562053 | 4.1:-20202897 | MS.gene028495:CDS |
| GGTATTCGTGAGAATGTTGG+AGG | 0.563362 | 4.1:-20205721 | MS.gene028495:CDS |
| TCAAGAGAAGACAAAGGAGA+TGG | 0.563452 | 4.1:+20203103 | None:intergenic |
| GGAGGAAGAAGGTGAAAGCT+GGG | 0.565836 | 4.1:-20205703 | MS.gene028495:CDS |
| ACTATGCATCAGCTTCCTCA+AGG | 0.566000 | 4.1:-20202545 | MS.gene028495:CDS |
| GAAGGAGAAGGCTGGTATGT+GGG | 0.577034 | 4.1:-20202593 | MS.gene028495:CDS |
| TAAGGATGGAGAAAATGGTA+GGG | 0.582135 | 4.1:-20205821 | None:intergenic |
| GAATATGTGAAGAAAATGTA+CGG | 0.585607 | 4.1:-20205756 | MS.gene028495:CDS |
| ACACCAATGTCCCATCCAGT+TGG | 0.587627 | 4.1:+20203154 | None:intergenic |
| TGGCCGTGCAATTGGAGGGA+AGG | 0.591128 | 4.1:-20203188 | MS.gene028495:CDS |
| TACTTGGCCGTGCAATTGGA+GGG | 0.593875 | 4.1:-20203192 | MS.gene028495:CDS |
| ATGAGATTGAAGGAGAAGGC+TGG | 0.598435 | 4.1:-20202601 | MS.gene028495:CDS |
| ATGTGAAGAAAATGTACGGA+GGG | 0.598596 | 4.1:-20205752 | MS.gene028495:CDS |
| AGACAAAGGAGATGGCAAAG+AGG | 0.600946 | 4.1:+20203111 | None:intergenic |
| ATGCACATGGAAATGATACA+TGG | 0.606888 | 4.1:-20205593 | MS.gene028495:CDS |
| TTCCATTATTCAATGCCACA+GGG | 0.608968 | 4.1:-20203065 | MS.gene028495:CDS |
| TCACCTTCCCTCCAATTGCA+CGG | 0.609277 | 4.1:+20203185 | None:intergenic |
| GGGAGCCAGATAAGGAGGCA+TGG | 0.620410 | 4.1:-20202573 | MS.gene028495:CDS |
| GGAAGTTCAAGAGAAGACAA+AGG | 0.628531 | 4.1:+20203097 | None:intergenic |
| AGGGAGTGGGAAGAGATTTG+GGG | 0.635409 | 4.1:-20205802 | MS.gene028495:CDS |
| CTATGCATCAGCTTCCTCAA+GGG | 0.636887 | 4.1:-20202544 | MS.gene028495:CDS |
| AGAATGTCTTTAGAGTACTC+AGG | 0.643445 | 4.1:+20202794 | None:intergenic |
| TATGTGGGAGCCAGATAAGG+AGG | 0.645828 | 4.1:-20202578 | MS.gene028495:CDS |
| GATGACCAAAGCAAATGCCA+AGG | 0.653162 | 4.1:+20205517 | None:intergenic |
| GGCGCGTGGAGAGTTTCCAA+AGG | 0.654333 | 4.1:-20205667 | MS.gene028495:CDS |
| GATGTTTATAAGGTGGCGCG+TGG | 0.656268 | 4.1:-20205681 | MS.gene028495:CDS |
| TATTCAGCGAAATTTCATCA+CGG | 0.662548 | 4.1:-20202750 | MS.gene028495:intron |
| AAGCTGGGATGTTTATAAGG+TGG | 0.664620 | 4.1:-20205688 | MS.gene028495:CDS |
| TATGTGAAGAAAATGTACGG+AGG | 0.666492 | 4.1:-20205753 | MS.gene028495:CDS |
| TTTCACAATAACGACCCTTG+AGG | 0.678121 | 4.1:+20202530 | None:intergenic |
| TGCACATGGAAATGATACAT+GGG | 0.699531 | 4.1:-20205592 | MS.gene028495:CDS |
| GGTAGTTGTAGTGATGCACA+TGG | 0.738222 | 4.1:-20205606 | MS.gene028495:CDS |
| ACACACACACCTCATCCCTG+TGG | 0.770427 | 4.1:+20203050 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAATTAAGGAAAATTT+AGG | + | chr4.1:20203308-20203327 | None:intergenic | 10.0% |
| !! | ATAAATAAATGAAGTAATAA+AGG | + | chr4.1:20205596-20205615 | None:intergenic | 10.0% |
| !! | TAAAGAATAAAAAGAATTAA+TGG | - | chr4.1:20203941-20203960 | MS.gene028495:intron | 10.0% |
| !! | TAAAGAATAAAAAGAATTAA+TGG | + | chr4.1:20203960-20203941 | None:intergenic | 10.0% |
| !!! | AATTTAATTAAGGAAATTTT+AGG | - | chr4.1:20203916-20203935 | MS.gene028495:intron | 10.0% |
| !!! | ATCTCATATTTTTTTATTTA+TGG | + | chr4.1:20203485-20203504 | None:intergenic | 10.0% |
| !!! | ATGATAATGTTAATTTAATA+AGG | + | chr4.1:20205297-20205316 | None:intergenic | 10.0% |
| !!! | ATGTTAATTATTATGATTTT+TGG | + | chr4.1:20204578-20204597 | None:intergenic | 10.0% |
| !!! | TTAAAATTTTGATATATTGA+AGG | - | chr4.1:20204323-20204342 | MS.gene028495:intron | 10.0% |
| !!! | TTTTATTGAATCATAATTTT+AGG | - | chr4.1:20203770-20203789 | MS.gene028495:intron | 10.0% |
| !!! | TTTTATTTGTACAAAAAAAA+AGG | - | chr4.1:20203578-20203597 | MS.gene028495:intron | 10.0% |
| !! | ACAAAAAAAATTAATGATTG+TGG | - | chr4.1:20204865-20204884 | MS.gene028495:intron | 15.0% |
| !! | ACCATTAATTAACTTTATAA+AGG | - | chr4.1:20205046-20205065 | MS.gene028495:intron | 15.0% |
| !! | AGTGATTTAATTACTAAATA+TGG | + | chr4.1:20202839-20202858 | None:intergenic | 15.0% |
| !! | ATAGAAAATATAAATATTGG+TGG | - | chr4.1:20205806-20205825 | MS.gene028495:CDS | 15.0% |
| !! | ATATTTAGTAATTAAATCAC+TGG | - | chr4.1:20202838-20202857 | MS.gene028495:CDS | 15.0% |
| !! | ATTATGTTTAATTCCTTAAA+AGG | - | chr4.1:20203881-20203900 | MS.gene028495:intron | 15.0% |
| !! | ATTGAATATGTAGTAATTAT+AGG | + | chr4.1:20203508-20203527 | None:intergenic | 15.0% |
| !! | CAAAAAAAATTAATGATTGT+GGG | - | chr4.1:20204866-20204885 | MS.gene028495:intron | 15.0% |
| !! | GGAATAGAAAATATAAATAT+TGG | - | chr4.1:20205803-20205822 | MS.gene028495:CDS | 15.0% |
| !! | GTTAAATATTAGTAATAGAT+AGG | + | chr4.1:20204546-20204565 | None:intergenic | 15.0% |
| !! | TCAAAAAAAAAAAAGGAATA+GGG | - | chr4.1:20203016-20203035 | MS.gene028495:intron | 15.0% |
| !! | TCCTTTATAAAGTTAATTAA+TGG | + | chr4.1:20205050-20205069 | None:intergenic | 15.0% |
| !! | TTCAAAAAAAAAAAAGGAAT+AGG | - | chr4.1:20203015-20203034 | MS.gene028495:intron | 15.0% |
| !! | TTGTCAAAAAAAAAAAAAAC+AGG | + | chr4.1:20203257-20203276 | None:intergenic | 15.0% |
| !!! | AATTTCTAAGGTATTTTTTT+GGG | + | chr4.1:20204378-20204397 | None:intergenic | 15.0% |
| !!! | TTAATTCTTTAATCCTTTTA+AGG | + | chr4.1:20203897-20203916 | None:intergenic | 15.0% |
| !!! | TTTTGTCAAAAAAAAAAAAC+AGG | - | chr4.1:20203965-20203984 | MS.gene028495:intron | 15.0% |
| !!! | TTTTTTTAAGAATAGAAAAG+TGG | - | chr4.1:20203555-20203574 | MS.gene028495:intron | 15.0% |
| !!! | TTTTTTTTTGAGGAAAAATA+GGG | - | chr4.1:20204192-20204211 | MS.gene028495:intron | 15.0% |
| !!! | TTTTTTTTTTGAGGAAAAAT+AGG | - | chr4.1:20204191-20204210 | MS.gene028495:intron | 15.0% |
| !! | AAAAAAAAAAAACAGGTTTG+AGG | - | chr4.1:20203972-20203991 | MS.gene028495:intron | 20.0% |
| !! | AAAAAAAAAAAACAGGTTTG+AGG | + | chr4.1:20203991-20203972 | None:intergenic | 20.0% |
| !! | AAAAAATGAAAGGTTTGAAA+TGG | + | chr4.1:20202894-20202913 | None:intergenic | 20.0% |
| !! | AAAAAGAATCGTGTATTTAA+TGG | + | chr4.1:20203427-20203446 | None:intergenic | 20.0% |
| !! | AAAATACCTTAGAAATTCTT+AGG | - | chr4.1:20204381-20204400 | MS.gene028495:intron | 20.0% |
| !! | AAATCCATATTTCTTCATTA+TGG | + | chr4.1:20203399-20203418 | None:intergenic | 20.0% |
| !! | AACAAAAATTACTAGTAGAA+AGG | + | chr4.1:20202918-20202937 | None:intergenic | 20.0% |
| !! | ACGTTTCTTAATTAAAAAGA+GGG | - | chr4.1:20203529-20203548 | MS.gene028495:intron | 20.0% |
| !! | GCTAATTAATTAAATCCAAA+AGG | + | chr4.1:20205390-20205409 | None:intergenic | 20.0% |
| !! | TCCACTTTCAAAAAAAAAAA+AGG | - | chr4.1:20203009-20203028 | MS.gene028495:intron | 20.0% |
| !!! | AAAAATGAAAGGTTTGAAAT+GGG | + | chr4.1:20202893-20202912 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTAATCATAGCAC+AGG | - | chr4.1:20205334-20205353 | MS.gene028495:intron | 20.0% |
| !!! | GAATTTCTAAGGTATTTTTT+TGG | + | chr4.1:20204379-20204398 | None:intergenic | 20.0% |
| !!! | GTTTTTTTAGAGGAAAAATA+GGG | - | chr4.1:20204221-20204240 | MS.gene028495:intron | 20.0% |
| !!! | TCCTTTTTTTTTTTTGAAAG+TGG | + | chr4.1:20203013-20203032 | None:intergenic | 20.0% |
| !!! | TGTTAATTTGATTAGATACT+TGG | - | chr4.1:20205097-20205116 | MS.gene028495:intron | 20.0% |
| !!! | TTTTTTTAGAGGAAAAATAG+GGG | - | chr4.1:20204222-20204241 | MS.gene028495:intron | 20.0% |
| !!! | TTTTTTTTGAGGAAAAATAG+GGG | - | chr4.1:20204193-20204212 | MS.gene028495:intron | 20.0% |
| ! | ATTGCTAATTTAGTAAGAGT+TGG | - | chr4.1:20205652-20205671 | MS.gene028495:CDS | 25.0% |
| ! | CAAATGGAACAAATTACAAA+TGG | + | chr4.1:20204967-20204948 | None:intergenic | 25.0% |
| ! | CACGTTTCTTAATTAAAAAG+AGG | - | chr4.1:20203528-20203547 | MS.gene028495:intron | 25.0% |
| ! | GAAGTAATAAAGGAAAATGA+TGG | + | chr4.1:20205586-20205605 | None:intergenic | 25.0% |
| ! | GAATATGTGAAGAAAATGTA+CGG | - | chr4.1:20202549-20202568 | MS.gene028495:CDS | 25.0% |
| ! | GTAGAAAGGAAAAAAATGAA+AGG | + | chr4.1:20202904-20202923 | None:intergenic | 25.0% |
| ! | TACAAAAAAAGACAAAACCA+TGG | + | chr4.1:20204763-20204782 | None:intergenic | 25.0% |
| ! | TTCTAATTCAGCTTTACATT+GGG | + | chr4.1:20204986-20205005 | None:intergenic | 25.0% |
| !! | AGCAATTTTCAACTAACAAT+AGG | - | chr4.1:20204160-20204179 | MS.gene028495:intron | 25.0% |
| !! | ATATAAGTGCTTTATTACCA+TGG | - | chr4.1:20204743-20204762 | MS.gene028495:intron | 25.0% |
| !! | CAATTTTCAACTAACAATAG+GGG | - | chr4.1:20204162-20204181 | MS.gene028495:intron | 25.0% |
| !! | GCAATTTTCAACTAACAATA+GGG | - | chr4.1:20204161-20204180 | MS.gene028495:intron | 25.0% |
| !! | TCTTGATATATTTCTCCTTT+TGG | - | chr4.1:20205372-20205391 | MS.gene028495:intron | 25.0% |
| !!! | AAATTTTGCTATGAGATTGA+AGG | - | chr4.1:20205694-20205713 | MS.gene028495:CDS | 25.0% |
| !!! | CAAAATTTTAAAATAGTCCC+TGG | + | chr4.1:20204314-20204333 | None:intergenic | 25.0% |
| !!! | GGTTTTTTTAGAGGAAAAAT+AGG | - | chr4.1:20204220-20204239 | MS.gene028495:intron | 25.0% |
| !!! | TTTTGGGTAATAGTCAATTT+GGG | + | chr4.1:20204362-20204381 | None:intergenic | 25.0% |
| !!! | TTTTTGGGTAATAGTCAATT+TGG | + | chr4.1:20204363-20204382 | None:intergenic | 25.0% |
| AATAGGGATAAATACTGATG+TGG | - | chr4.1:20203032-20203051 | MS.gene028495:intron | 30.0% | |
| AGATATGGAGATCACATTAT+GGG | - | chr4.1:20205475-20205494 | MS.gene028495:intron | 30.0% | |
| AGATTCAATTCATCATCCTT+TGG | + | chr4.1:20202657-20202676 | None:intergenic | 30.0% | |
| AGTGGTTATTGTGATCATTA+AGG | - | chr4.1:20204246-20204265 | MS.gene028495:intron | 30.0% | |
| CTCTCGTATTTCTTCATTTA+TGG | - | chr4.1:20203825-20203844 | MS.gene028495:intron | 30.0% | |
| CTTCTAATTCAGCTTTACAT+TGG | + | chr4.1:20204987-20205006 | None:intergenic | 30.0% | |
| GAGATAGACACAAAAATAAG+TGG | + | chr4.1:20204914-20204933 | None:intergenic | 30.0% | |
| GATGAATTGAATCTGTATGA+TGG | - | chr4.1:20202663-20202682 | MS.gene028495:intron | 30.0% | |
| GGAACAAATTACAAATTGAG+AGG | - | chr4.1:20204953-20204972 | MS.gene028495:intron | 30.0% | |
| GGAATTGAGATGTTTAGATA+TGG | - | chr4.1:20205460-20205479 | MS.gene028495:intron | 30.0% | |
| GTGGTTATTGTGATCATTAA+GGG | - | chr4.1:20204247-20204266 | MS.gene028495:intron | 30.0% | |
| GTTGCCATAATGAAGAAATA+TGG | - | chr4.1:20203392-20203411 | MS.gene028495:intron | 30.0% | |
| TAGACACAAAAATAAGTGGT+AGG | + | chr4.1:20204910-20204929 | None:intergenic | 30.0% | |
| TAGATATGGAGATCACATTA+TGG | - | chr4.1:20205474-20205493 | MS.gene028495:intron | 30.0% | |
| TATTCAGCGAAATTTCATCA+CGG | - | chr4.1:20205555-20205574 | MS.gene028495:CDS | 30.0% | |
| TGAAATTTCGCTGAATAAGA+CGG | + | chr4.1:20205552-20205571 | None:intergenic | 30.0% | |
| ! | AGGGTGATAATGTTATGTTT+CGG | + | chr4.1:20205177-20205196 | None:intergenic | 30.0% |
| ! | TCATTATCTACGTTTTGTCA+AGG | + | chr4.1:20204494-20204513 | None:intergenic | 30.0% |
| ! | TTGTTCCATTTGTTGCAATT+TGG | - | chr4.1:20204830-20204849 | MS.gene028495:intron | 30.0% |
| ! | TTGTTCCATTTGTTGCAATT+TGG | + | chr4.1:20204849-20204830 | None:intergenic | 30.0% |
| !!! | GACTATTTTGACTAACAAAG+TGG | - | chr4.1:20204287-20204306 | MS.gene028495:intron | 30.0% |
| !!! | GGGAAGTAGTTTTTTTTTTG+AGG | - | chr4.1:20204182-20204201 | MS.gene028495:intron | 30.0% |
| !!! | TTATGATTTTTGGAGTTGTC+TGG | + | chr4.1:20204568-20204587 | None:intergenic | 30.0% |
| AAAATCCTTGGCATTTGCTT+TGG | - | chr4.1:20202783-20202802 | MS.gene028495:CDS | 35.0% | |
| AACCTATGATGCCAATGTAA+AGG | - | chr4.1:20204782-20204801 | MS.gene028495:intron | 35.0% | |
| ACCAGTCCTAAGAATTTCTA+AGG | + | chr4.1:20204390-20204409 | None:intergenic | 35.0% | |
| ACCTATGATGCCAATGTAAA+GGG | - | chr4.1:20204783-20204802 | MS.gene028495:intron | 35.0% | |
| ACCTTAGAAATTCTTAGGAC+TGG | - | chr4.1:20204386-20204405 | MS.gene028495:intron | 35.0% | |
| ATGCACATGGAAATGATACA+TGG | - | chr4.1:20202712-20202731 | MS.gene028495:intron | 35.0% | |
| ATGTGAAGAAAATGTACGGA+GGG | - | chr4.1:20202553-20202572 | MS.gene028495:CDS | 35.0% | |
| ATGTGAAGATTGCATCACAT+GGG | + | chr4.1:20204681-20204700 | None:intergenic | 35.0% | |
| ATTGCTAAATCGGATAAGAC+TGG | - | chr4.1:20205439-20205458 | MS.gene028495:intron | 35.0% | |
| CACACTTGTCTATATATGCA+TGG | - | chr4.1:20204655-20204674 | MS.gene028495:intron | 35.0% | |
| CATCTGCAATCAGTAGTTAA+TGG | + | chr4.1:20203797-20203816 | None:intergenic | 35.0% | |
| CTTTACGTTACGACATGATA+TGG | - | chr4.1:20204707-20204726 | MS.gene028495:intron | 35.0% | |
| GACATGAACAAGAAAATCCT+TGG | - | chr4.1:20202771-20202790 | MS.gene028495:CDS | 35.0% | |
| GATCACATTATGGGAATTCA+AGG | - | chr4.1:20205484-20205503 | MS.gene028495:intron | 35.0% | |
| GATTTACATGTCGCAAAAAC+TGG | + | chr4.1:20204624-20204643 | None:intergenic | 35.0% | |
| GGAACAAATTACAAATGGAG+AGG | + | chr4.1:20204817-20204836 | None:intergenic | 35.0% | |
| GGTCGTTATTGTGAAAGAAA+TGG | - | chr4.1:20205782-20205801 | MS.gene028495:CDS | 35.0% | |
| TAACTGCCGAATTATGAAAC+CGG | - | chr4.1:20203143-20203162 | MS.gene028495:CDS | 35.0% | |
| TAACTGCCGAATTATGAAAC+CGG | + | chr4.1:20203162-20203143 | None:intergenic | 35.0% | |
| TAGTGCGTTAAATATCCCAA+AGG | + | chr4.1:20204420-20204439 | None:intergenic | 35.0% | |
| TATGTGAAGAAAATGTACGG+AGG | - | chr4.1:20202552-20202571 | MS.gene028495:CDS | 35.0% | |
| TCTCTCCAAATTGCAACAAA+TGG | - | chr4.1:20204932-20204951 | MS.gene028495:intron | 35.0% | |
| TCTCTCCAAATTGCAACAAA+TGG | + | chr4.1:20204951-20204932 | None:intergenic | 35.0% | |
| TGAAAGCTGGGATGTTTATA+AGG | - | chr4.1:20202614-20202633 | MS.gene028495:CDS | 35.0% | |
| TGCACATGGAAATGATACAT+GGG | - | chr4.1:20202713-20202732 | MS.gene028495:intron | 35.0% | |
| TTAACTACCGAGGAAAACTT+CGG | + | chr4.1:20204050-20204069 | None:intergenic | 35.0% | |
| TTCCATTATTCAATGCCACA+GGG | - | chr4.1:20205240-20205259 | MS.gene028495:intron | 35.0% | |
| TTTCCATTATTCAATGCCAC+AGG | - | chr4.1:20205239-20205258 | MS.gene028495:intron | 35.0% | |
| ! | AAAAGACGTTTTTACCCCTT+CGG | - | chr4.1:20203116-20203135 | MS.gene028495:CDS | 35.0% |
| ! | AAAAGACGTTTTTACCCCTT+CGG | + | chr4.1:20203135-20203116 | None:intergenic | 35.0% |
| ! | TGAATAATGGAAAGACTCGT+TGG | + | chr4.1:20205232-20205251 | None:intergenic | 35.0% |
| !! | AGAATGTCTTTAGAGTACTC+AGG | + | chr4.1:20205514-20205533 | None:intergenic | 35.0% |
| !! | GTTGGTTGATTTGAATTGAC+AGG | - | chr4.1:20205670-20205689 | MS.gene028495:CDS | 35.0% |
| !! | TTAAGTACCGAGGAAAACTT+CGG | - | chr4.1:20203172-20203191 | MS.gene028495:CDS | 35.0% |
| !!! | AAAATGTACGGAGGGTATTT+TGG | - | chr4.1:20202561-20202580 | MS.gene028495:CDS | 35.0% |
| !!! | AAATGTACGGAGGGTATTTT+GGG | - | chr4.1:20202562-20202581 | MS.gene028495:CDS | 35.0% |
| !!! | TATGATGGTTTTGTGATCAC+TGG | - | chr4.1:20202678-20202697 | MS.gene028495:intron | 35.0% |
| AAGCTGGGATGTTTATAAGG+TGG | - | chr4.1:20202617-20202636 | MS.gene028495:intron | 40.0% | |
| CATGATGAGCGTATAACACA+TGG | - | chr4.1:20202977-20202996 | MS.gene028495:intron | 40.0% | |
| CATGTGAAGATTGCATCACA+TGG | + | chr4.1:20204682-20204701 | None:intergenic | 40.0% | |
| CCGAGGAAATCTGAAAACTT+CGG | - | chr4.1:20203205-20203224 | MS.gene028495:intron | 40.0% | |
| CCGAGGAAATCTGAAAACTT+CGG | + | chr4.1:20203224-20203205 | None:intergenic | 40.0% | |
| CCTATGATGCCAATGTAAAG+GGG | - | chr4.1:20204784-20204803 | MS.gene028495:intron | 40.0% | |
| GGAAGTTCAAGAGAAGACAA+AGG | + | chr4.1:20205211-20205230 | None:intergenic | 40.0% | |
| GGATCTTTACCCCTTTACAT+TGG | + | chr4.1:20204796-20204815 | None:intergenic | 40.0% | |
| GGCTGAAGTGATTGCTAAAT+CGG | - | chr4.1:20205429-20205448 | MS.gene028495:intron | 40.0% | |
| TAGAGGAAAAATAGGGGAAG+TGG | - | chr4.1:20204228-20204247 | MS.gene028495:intron | 40.0% | |
| TCAAGAGAAGACAAAGGAGA+TGG | + | chr4.1:20205205-20205224 | None:intergenic | 40.0% | |
| TGCTATGAGATTGAAGGAGA+AGG | - | chr4.1:20205700-20205719 | MS.gene028495:CDS | 40.0% | |
| TTGACTAACAAAGTGGACCA+GGG | - | chr4.1:20204294-20204313 | MS.gene028495:intron | 40.0% | |
| TTGAGGAAAAATAGGGGAAG+TGG | - | chr4.1:20204199-20204218 | MS.gene028495:intron | 40.0% | |
| TTTAGCAATCACTTCAGCCT+TGG | + | chr4.1:20205428-20205447 | None:intergenic | 40.0% | |
| TTTCACAATAACGACCCTTG+AGG | + | chr4.1:20205778-20205797 | None:intergenic | 40.0% | |
| TTTGACTAACAAAGTGGACC+AGG | - | chr4.1:20204293-20204312 | MS.gene028495:intron | 40.0% | |
| ! | AAACAGGTTTGAGGTTTCCT+CGG | + | chr4.1:20204000-20203981 | None:intergenic | 40.0% |
| ! | ATCCCTGTGGCATTGAATAA+TGG | + | chr4.1:20205245-20205264 | None:intergenic | 40.0% |
| ! | CCGAAGTTTTCAGATTTCCT+CGG | - | chr4.1:20204014-20204033 | MS.gene028495:intron | 40.0% |
| ! | CCGAAGTTTTCAGATTTCCT+CGG | + | chr4.1:20204033-20204014 | None:intergenic | 40.0% |
| ! | TATCTACGTTTTGTCAAGGC+AGG | + | chr4.1:20204490-20204509 | None:intergenic | 40.0% |
| ! | TGCTGTTGACACATTAGCTT+TGG | - | chr4.1:20203078-20203097 | MS.gene028495:CDS | 40.0% |
| ! | TGCTGTTGACACATTAGCTT+TGG | + | chr4.1:20203097-20203078 | None:intergenic | 40.0% |
| ! | TTAACTGCCGAAGTTTTCCT+CGG | - | chr4.1:20204040-20204059 | MS.gene028495:intron | 40.0% |
| ! | TTAACTGCCGAAGTTTTCCT+CGG | + | chr4.1:20204059-20204040 | None:intergenic | 40.0% |
| !! | TTGACACATTAGCTTTGGCT+AGG | - | chr4.1:20203083-20203102 | MS.gene028495:CDS | 40.0% |
| !! | TTGACACATTAGCTTTGGCT+AGG | + | chr4.1:20203102-20203083 | None:intergenic | 40.0% |
| !!! | AATGTACGGAGGGTATTTTG+GGG | - | chr4.1:20202563-20202582 | MS.gene028495:CDS | 40.0% |
| !!! | AGGGGAAGTGGTTTTTTTAG+AGG | - | chr4.1:20204211-20204230 | MS.gene028495:intron | 40.0% |
| !!! | TTTTTTGAAAGTGGACCACC+TGG | + | chr4.1:20203004-20203023 | None:intergenic | 40.0% |
| ACTATGCATCAGCTTCCTCA+AGG | - | chr4.1:20205760-20205779 | MS.gene028495:CDS | 45.0% | |
| AGACAAAGGAGATGGCAAAG+AGG | + | chr4.1:20205197-20205216 | None:intergenic | 45.0% | |
| ATGAGATTGAAGGAGAAGGC+TGG | - | chr4.1:20205704-20205723 | MS.gene028495:CDS | 45.0% | |
| ATGGAGAAAATGGTAGGGAG+TGG | - | chr4.1:20202489-20202508 | MS.gene028495:CDS | 45.0% | |
| ATTCGGCAGTTAACTACCGA+AGG | - | chr4.1:20204087-20204106 | MS.gene028495:intron | 45.0% | |
| ATTCGGCAGTTAACTACCGA+AGG | + | chr4.1:20204106-20204087 | None:intergenic | 45.0% | |
| CCCCTTTACATTGGCATCAT+AGG | + | chr4.1:20204787-20204806 | None:intergenic | 45.0% | |
| CTATGCATCAGCTTCCTCAA+GGG | - | chr4.1:20205761-20205780 | MS.gene028495:CDS | 45.0% | |
| GACAAAGGAGATGGCAAAGA+GGG | + | chr4.1:20205196-20205215 | None:intergenic | 45.0% | |
| GATGACCAAAGCAAATGCCA+AGG | + | chr4.1:20202791-20202810 | None:intergenic | 45.0% | |
| GGTAGTTGTAGTGATGCACA+TGG | - | chr4.1:20202699-20202718 | MS.gene028495:intron | 45.0% | |
| GGTATTCGTGAGAATGTTGG+AGG | - | chr4.1:20202584-20202603 | MS.gene028495:CDS | 45.0% | |
| GTGAGAATGTTGGAGGAAGA+AGG | - | chr4.1:20202591-20202610 | MS.gene028495:CDS | 45.0% | |
| TAGATACTTGGCCGTGCAAT+TGG | - | chr4.1:20205109-20205128 | MS.gene028495:intron | 45.0% | |
| TAGGGAGTGGGAAGAGATTT+GGG | - | chr4.1:20202502-20202521 | MS.gene028495:CDS | 45.0% | |
| TATTCAATGCCACAGGGATG+AGG | - | chr4.1:20205246-20205265 | MS.gene028495:intron | 45.0% | |
| TGGAGAAAATGGTAGGGAGT+GGG | - | chr4.1:20202490-20202509 | MS.gene028495:CDS | 45.0% | |
| TGGCATTTGCTTTGGTCATC+AGG | - | chr4.1:20202791-20202810 | MS.gene028495:CDS | 45.0% | |
| TGGTAGGTCCTATCACTAAG+TGG | + | chr4.1:20204894-20204913 | None:intergenic | 45.0% | |
| TGTGGGATCCACTTAGTGAT+AGG | - | chr4.1:20204883-20204902 | MS.gene028495:intron | 45.0% | |
| TTCGGCAGTTAACTACCGAA+GGG | - | chr4.1:20204088-20204107 | MS.gene028495:intron | 45.0% | |
| TTCGGCAGTTAACTACCGAA+GGG | + | chr4.1:20204107-20204088 | None:intergenic | 45.0% | |
| ! | CTGCAGCCGGTTTCATAATT+CGG | - | chr4.1:20204070-20204089 | MS.gene028495:intron | 45.0% |
| ! | CTGCAGCCGGTTTCATAATT+CGG | + | chr4.1:20204089-20204070 | None:intergenic | 45.0% |
| ! | TGGGGTATTCGTGAGAATGT+TGG | - | chr4.1:20202581-20202600 | MS.gene028495:CDS | 45.0% |
| !! | TAAAGAATTAAATTTAATTA+AGG | - | chr4.1:20203906-20203925 | MS.gene028495:intron | 5.0% |
| !! | TAAAGAATTAAATTTAATTA+AGG | + | chr4.1:20203925-20203906 | None:intergenic | 5.0% |
| !!! | TTAATTCTTTAATTATTTTA+AGG | - | chr4.1:20203327-20203346 | MS.gene028495:intron | 5.0% |
| AAGGTGACTCGATCTCCAAC+TGG | - | chr4.1:20205136-20205155 | MS.gene028495:intron | 50.0% | |
| ACACCAATGTCCCATCCAGT+TGG | + | chr4.1:20205154-20205173 | None:intergenic | 50.0% | |
| ACTTCGGCAGTTAACTGCTG+AGG | + | chr4.1:20204001-20204020 | None:intergenic | 50.0% | |
| AGGGAGTGGGAAGAGATTTG+GGG | - | chr4.1:20202503-20202522 | MS.gene028495:CDS | 50.0% | |
| ATACTTGGCCGTGCAATTGG+AGG | - | chr4.1:20205112-20205131 | MS.gene028495:intron | 50.0% | |
| CGTATAACACATGGTCCAGG+TGG | - | chr4.1:20202986-20203005 | MS.gene028495:intron | 50.0% | |
| CTCTTCCATGCCTCCTTATC+TGG | + | chr4.1:20205740-20205759 | None:intergenic | 50.0% | |
| GAAGGAGAAGGCTGGTATGT+GGG | - | chr4.1:20205712-20205731 | MS.gene028495:CDS | 50.0% | |
| GACTCGATCTCCAACTGGAT+GGG | - | chr4.1:20205141-20205160 | MS.gene028495:intron | 50.0% | |
| GAGCGTATAACACATGGTCC+AGG | - | chr4.1:20202983-20203002 | MS.gene028495:intron | 50.0% | |
| GATGTTTATAAGGTGGCGCG+TGG | - | chr4.1:20202624-20202643 | MS.gene028495:intron | 50.0% | |
| GGAGGAAGAAGGTGAAAGCT+GGG | - | chr4.1:20202602-20202621 | MS.gene028495:CDS | 50.0% | |
| GTAGGGAGTGGGAAGAGATT+TGG | - | chr4.1:20202501-20202520 | MS.gene028495:CDS | 50.0% | |
| TACTTGGCCGTGCAATTGGA+GGG | - | chr4.1:20205113-20205132 | MS.gene028495:intron | 50.0% | |
| TATGTGGGAGCCAGATAAGG+AGG | - | chr4.1:20205727-20205746 | MS.gene028495:CDS | 50.0% | |
| TCACCTTCCCTCCAATTGCA+CGG | + | chr4.1:20205123-20205142 | None:intergenic | 50.0% | |
| TCGGCAGTTAACTACCGAAG+GGG | - | chr4.1:20204089-20204108 | MS.gene028495:intron | 50.0% | |
| TCGGCAGTTAACTACCGAAG+GGG | + | chr4.1:20204108-20204089 | None:intergenic | 50.0% | |
| TCTCCAACTGGATGGGACAT+TGG | - | chr4.1:20205148-20205167 | MS.gene028495:intron | 50.0% | |
| TGAAGGAGAAGGCTGGTATG+TGG | - | chr4.1:20205711-20205730 | MS.gene028495:CDS | 50.0% | |
| TGACTCGATCTCCAACTGGA+TGG | - | chr4.1:20205140-20205159 | MS.gene028495:intron | 50.0% | |
| TGGAGGAAGAAGGTGAAAGC+TGG | - | chr4.1:20202601-20202620 | MS.gene028495:CDS | 50.0% | |
| TGGTATGTGGGAGCCAGATA+AGG | - | chr4.1:20205724-20205743 | MS.gene028495:CDS | 50.0% | |
| !! | AGGACTGGTTCTCTCTCCTT+TGG | - | chr4.1:20204401-20204420 | MS.gene028495:intron | 50.0% |
| !! | GGACTGGTTCTCTCTCCTTT+GGG | - | chr4.1:20204402-20204421 | MS.gene028495:intron | 50.0% |
| ACACACACACCTCATCCCTG+TGG | + | chr4.1:20205258-20205277 | None:intergenic | 55.0% | |
| ACTTCGGCAGTTAACTGCCG+AGG | - | chr4.1:20203188-20203207 | MS.gene028495:CDS | 55.0% | |
| ACTTCGGCAGTTAACTGCCG+AGG | + | chr4.1:20203207-20203188 | None:intergenic | 55.0% | |
| CCTCGGTACTTAACTGCAGC+CGG | + | chr4.1:20203165-20203184 | None:intergenic | 55.0% | |
| CCTCGGTAGTTAACTGCAGC+CGG | - | chr4.1:20204057-20204076 | MS.gene028495:intron | 55.0% | |
| GCAATCACTTCAGCCTTGGC+AGG | + | chr4.1:20205424-20205443 | None:intergenic | 55.0% | |
| GCTAAGAGAGCTACCTGCCA+AGG | - | chr4.1:20205408-20205427 | MS.gene028495:intron | 55.0% | |
| CCGGCTGCAGTTAACTACCG+AGG | + | chr4.1:20204060-20204079 | None:intergenic | 60.0% | |
| GGCGCGTGGAGAGTTTCCAA+AGG | - | chr4.1:20202638-20202657 | MS.gene028495:intron | 60.0% | |
| GGGAGCCAGATAAGGAGGCA+TGG | - | chr4.1:20205732-20205751 | MS.gene028495:CDS | 60.0% | |
| TGGCCGTGCAATTGGAGGGA+AGG | - | chr4.1:20205117-20205136 | MS.gene028495:intron | 60.0% | |
| ! | CCGGCTGCAGTTAAGTACCG+AGG | - | chr4.1:20203162-20203181 | MS.gene028495:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 20202489 | 20205838 | 20202489 | ID=MS.gene028495 |
| chr4.1 | mRNA | 20202489 | 20205838 | 20202489 | ID=MS.gene028495.t1;Parent=MS.gene028495 |
| chr4.1 | exon | 20205515 | 20205838 | 20205515 | ID=MS.gene028495.t1.exon1;Parent=MS.gene028495.t1 |
| chr4.1 | CDS | 20205515 | 20205838 | 20205515 | ID=cds.MS.gene028495.t1;Parent=MS.gene028495.t1 |
| chr4.1 | exon | 20203060 | 20203215 | 20203060 | ID=MS.gene028495.t1.exon2;Parent=MS.gene028495.t1 |
| chr4.1 | CDS | 20203060 | 20203215 | 20203060 | ID=cds.MS.gene028495.t1;Parent=MS.gene028495.t1 |
| chr4.1 | exon | 20202751 | 20202918 | 20202751 | ID=MS.gene028495.t1.exon3;Parent=MS.gene028495.t1 |
| chr4.1 | CDS | 20202751 | 20202918 | 20202751 | ID=cds.MS.gene028495.t1;Parent=MS.gene028495.t1 |
| chr4.1 | exon | 20202489 | 20202635 | 20202489 | ID=MS.gene028495.t1.exon4;Parent=MS.gene028495.t1 |
| chr4.1 | CDS | 20202489 | 20202635 | 20202489 | ID=cds.MS.gene028495.t1;Parent=MS.gene028495.t1 |
| Gene Sequence |
| Protein sequence |
