Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01224.t1 | XP_003593280.1 | 94.7 | 245 | 11 | 1 | 1 | 243 | 1 | 245 | 9.40E-134 | 486.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01224.t1 | O82225 | 43.6 | 243 | 130 | 1 | 7 | 242 | 5 | 247 | 4.8e-62 | 239.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01224.t1 | A2Q1P2 | 94.7 | 245 | 11 | 1 | 1 | 243 | 1 | 245 | 6.8e-134 | 486.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene068013 | MS.gene01224 | PPI |
| MS.gene02208 | MS.gene01224 | PPI |
| MS.gene94216 | MS.gene01224 | PPI |
| MS.gene76089 | MS.gene01224 | PPI |
| MS.gene028495 | MS.gene01224 | PPI |
| MS.gene053590 | MS.gene01224 | PPI |
| MS.gene90232 | MS.gene01224 | PPI |
| MS.gene01224 | MS.gene02208 | PPI |
| MS.gene002251 | MS.gene01224 | PPI |
| MS.gene071221 | MS.gene01224 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01224.t1 | MTR_2g009720 | 93.469 | 245 | 14 | 1 | 1 | 243 | 1 | 245 | 1.87e-162 | 449 |
| MS.gene01224.t1 | MTR_2g009720 | 93.868 | 212 | 11 | 1 | 1 | 210 | 1 | 212 | 4.49e-138 | 388 |
| MS.gene01224.t1 | MTR_5g083210 | 59.091 | 242 | 96 | 1 | 2 | 240 | 1 | 242 | 1.34e-107 | 310 |
| MS.gene01224.t1 | MTR_4g093250 | 60.417 | 240 | 90 | 1 | 8 | 242 | 9 | 248 | 7.09e-101 | 294 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01224.t1 | AT2G23970 | 43.621 | 243 | 130 | 1 | 7 | 242 | 5 | 247 | 6.83e-79 | 238 |
| MS.gene01224.t1 | AT4G30550 | 40.984 | 244 | 136 | 1 | 6 | 241 | 6 | 249 | 6.62e-71 | 218 |
| MS.gene01224.t1 | AT4G30530 | 39.431 | 246 | 142 | 1 | 5 | 243 | 2 | 247 | 3.98e-67 | 208 |
| MS.gene01224.t1 | AT4G30540 | 40.891 | 247 | 139 | 2 | 1 | 242 | 1 | 245 | 1.44e-66 | 206 |
| MS.gene01224.t1 | AT2G23960 | 38.776 | 245 | 143 | 1 | 5 | 242 | 2 | 246 | 1.86e-65 | 204 |
| MS.gene01224.t1 | AT2G23960 | 40.777 | 206 | 115 | 1 | 5 | 203 | 2 | 207 | 1.32e-58 | 185 |
Find 55 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTGTGTTGTAGATAAT+TGG | 0.121581 | 2.4:+73413191 | MS.gene01224:intron |
| CCTGCTGAAGCAGAGGTAAT+TGG | 0.304947 | 2.4:+73413440 | MS.gene01224:CDS |
| AGACTGGAATTGAGATGTTT+AGG | 0.334640 | 2.4:+73413474 | MS.gene01224:CDS |
| AAAAGACATGGAGGTTGTTA+TGG | 0.340928 | 2.4:+73410853 | MS.gene01224:CDS |
| AAGATGTCAATGTTGAATTC+AGG | 0.358354 | 2.4:-73413530 | None:intergenic |
| AAAATCCTTGGCATTTGCTT+TGG | 0.371037 | 2.4:+73411075 | MS.gene01224:CDS |
| TTATTGTGTTGTAGATAATT+GGG | 0.392824 | 2.4:+73413192 | MS.gene01224:intron |
| GGAGGGAAAGTGGTGCGTTC+TGG | 0.393122 | 2.4:+73413224 | MS.gene01224:CDS |
| TAGATAATTGGGCGTGCATT+GGG | 0.419343 | 2.4:+73413203 | MS.gene01224:intron |
| TGGCATTTGCTTTGGCCACC+AGG | 0.426626 | 2.4:+73411083 | MS.gene01224:CDS |
| GATGATGTTCATTTCTATGA+TGG | 0.435255 | 2.4:+73410955 | MS.gene01224:CDS |
| GGTGCGTTCTGGTGCAGGTT+GGG | 0.436830 | 2.4:+73413235 | MS.gene01224:CDS |
| TACGTACCTGGATTAAATTA+CGG | 0.443578 | 2.4:-73413580 | None:intergenic |
| AGGTATGGAAATCACATGTT+GGG | 0.455673 | 2.4:+73413494 | MS.gene01224:CDS |
| TTAAATTACGGTTAGTGATA+CGG | 0.464304 | 2.4:-73413568 | None:intergenic |
| TTGATGAATCCAAGGGTCAT+TGG | 0.467310 | 2.4:-73411013 | None:intergenic |
| TGTTGAATTCAGGATGGCCT+TGG | 0.468204 | 2.4:-73413520 | None:intergenic |
| TCTGGTGCAGGTTGGGACAT+AGG | 0.478858 | 2.4:+73413242 | MS.gene01224:CDS |
| GGAATTGAGATGTTTAGGTA+TGG | 0.499218 | 2.4:+73413479 | MS.gene01224:CDS |
| AAAGTGGTGCGTTCTGGTGC+AGG | 0.500469 | 2.4:+73413230 | MS.gene01224:CDS |
| CCAATTACCTCTGCTTCAGC+AGG | 0.508145 | 2.4:-73413440 | None:intergenic |
| CTTTGTCTCACATTTCTGAA+AGG | 0.513703 | 2.4:+73414192 | MS.gene01224:CDS |
| ATGCACATGCCAATGACCCT+TGG | 0.523318 | 2.4:+73411004 | MS.gene01224:CDS |
| TAGAAAGAGTGAGGAAGAAG+AGG | 0.525905 | 2.4:+73410788 | MS.gene01224:CDS |
| GCGTGCATTGGGAGGGAAAG+TGG | 0.528941 | 2.4:+73413214 | MS.gene01224:CDS |
| TAGGTATGGAAATCACATGT+TGG | 0.530712 | 2.4:+73413493 | MS.gene01224:CDS |
| TTTCACTCTTCAAATGCCAC+CGG | 0.531268 | 2.4:+73413318 | MS.gene01224:CDS |
| CTTCAAATGCCACCGGGATG+AGG | 0.532803 | 2.4:+73413325 | MS.gene01224:CDS |
| TGCTTCGCATGTAAAGATGA+AGG | 0.533024 | 2.4:+73414131 | MS.gene01224:CDS |
| AATCACATGTTGGGCATCCA+AGG | 0.533204 | 2.4:+73413503 | MS.gene01224:CDS |
| ATTGGTTGGTCAGAAAAGAC+TGG | 0.534534 | 2.4:+73413458 | MS.gene01224:CDS |
| AAGAGATGTTAGAAAGAGTG+AGG | 0.535943 | 2.4:+73410779 | None:intergenic |
| GAATATTTGTTGAAAAGACA+TGG | 0.539899 | 2.4:+73410841 | MS.gene01224:CDS |
| AAATGAACATCATCGTCCTC+AGG | 0.539952 | 2.4:-73410946 | None:intergenic |
| GTAGATAATTGGGCGTGCAT+TGG | 0.541921 | 2.4:+73413202 | MS.gene01224:intron |
| CACTAACCGTAATTTAATCC+AGG | 0.545302 | 2.4:+73413574 | MS.gene01224:CDS |
| GTGAGGAGTTGATGAATCCA+AGG | 0.557820 | 2.4:-73411021 | None:intergenic |
| TTCACTCTTCAAATGCCACC+GGG | 0.561202 | 2.4:+73413319 | MS.gene01224:CDS |
| ATAATTGGGCGTGCATTGGG+AGG | 0.577537 | 2.4:+73413206 | MS.gene01224:CDS |
| TGGTGCGTTCTGGTGCAGGT+TGG | 0.584609 | 2.4:+73413234 | MS.gene01224:CDS |
| GGCTGAGGAAGGAGAAACAT+GGG | 0.587236 | 2.4:+73410894 | MS.gene01224:CDS |
| TAATTGGGCGTGCATTGGGA+GGG | 0.594620 | 2.4:+73413207 | MS.gene01224:CDS |
| TAGAAATAAATACCTCATCC+CGG | 0.596369 | 2.4:-73413337 | None:intergenic |
| AGATTTGCCTGCTGAAGCAG+AGG | 0.607007 | 2.4:+73413433 | MS.gene01224:CDS |
| GAGATCCAGACACAGAGGCA+TGG | 0.621789 | 2.4:+73414163 | MS.gene01224:CDS |
| CTGAAGCAGAGGTAATTGGT+TGG | 0.642332 | 2.4:+73413444 | MS.gene01224:CDS |
| TGGCTGAGGAAGGAGAAACA+TGG | 0.647270 | 2.4:+73410893 | MS.gene01224:CDS |
| TGTTAATGAAGAGTTTCCTG+AGG | 0.653611 | 2.4:+73410930 | MS.gene01224:CDS |
| GGTGGCCAAAGCAAATGCCA+AGG | 0.653984 | 2.4:-73411080 | None:intergenic |
| TCAATGTGTGAACAAGAGTG+AGG | 0.661343 | 2.4:-73411038 | None:intergenic |
| TGAGGAGTTGATGAATCCAA+GGG | 0.672228 | 2.4:-73411020 | None:intergenic |
| TGTCAATGTTGAATTCAGGA+TGG | 0.677095 | 2.4:-73413526 | None:intergenic |
| TATTTGTTGAAAAGACATGG+AGG | 0.690658 | 2.4:+73410844 | MS.gene01224:CDS |
| AAATAAATACCTCATCCCGG+TGG | 0.739123 | 2.4:-73413334 | None:intergenic |
| ATTACGAGATCCAGACACAG+AGG | 0.767805 | 2.4:+73414158 | MS.gene01224:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATATATTATTTTTATAA+AGG | - | chr2.4:73411925-73411944 | None:intergenic | 0.0% |
| !! | AAAATATACTTATATAAGTT+CGG | + | chr2.4:73411231-73411250 | MS.gene01224:intron | 10.0% |
| !! | ATAATAAAACAAAATTCATT+TGG | - | chr2.4:73411950-73411969 | None:intergenic | 10.0% |
| !!! | AAAATAATTTTAAACATTTG+TGG | - | chr2.4:73412680-73412699 | None:intergenic | 10.0% |
| !!! | AATGTTTAAAATTATTTTTG+CGG | + | chr2.4:73412682-73412701 | MS.gene01224:intron | 10.0% |
| !!! | ATATAATATATGATAATGAT+TGG | + | chr2.4:73411482-73411501 | MS.gene01224:intron | 10.0% |
| !!! | TATTAATAAAGTACTAATTT+AGG | - | chr2.4:73411755-73411774 | None:intergenic | 10.0% |
| !! | AAAAAAAAGAAATAGATACA+AGG | + | chr2.4:73412623-73412642 | MS.gene01224:intron | 15.0% |
| !! | AAATATACTTATATAAGTTC+GGG | + | chr2.4:73411232-73411251 | MS.gene01224:intron | 15.0% |
| !! | AATAACTATGAACTAATTAA+TGG | + | chr2.4:73411375-73411394 | MS.gene01224:intron | 15.0% |
| !! | ATAAATTAAAACCAAGAATA+TGG | + | chr2.4:73411892-73411911 | MS.gene01224:intron | 15.0% |
| !! | ATATTAAGAAAAAAATGCAA+AGG | + | chr2.4:73412252-73412271 | MS.gene01224:intron | 15.0% |
| !! | GCAAATAAAACTTATAAATA+AGG | - | chr2.4:73413994-73414013 | None:intergenic | 15.0% |
| !!! | TATGTTTAAGATTATTAGTA+TGG | - | chr2.4:73413659-73413678 | None:intergenic | 15.0% |
| !!! | TTCTTTAAAAATAATTTGTC+TGG | + | chr2.4:73412097-73412116 | MS.gene01224:intron | 15.0% |
| !! | AAAAGACTATAATGATAAGA+AGG | + | chr2.4:73411813-73411832 | MS.gene01224:intron | 20.0% |
| !! | ACATAATATACATGAACTTA+AGG | + | chr2.4:73413674-73413693 | MS.gene01224:intron | 20.0% |
| !! | AGTATTACTTAATTATTACC+TGG | - | chr2.4:73411104-73411123 | None:intergenic | 20.0% |
| !! | ATGATATTTGAACAACTATT+TGG | + | chr2.4:73412429-73412448 | MS.gene01224:intron | 20.0% |
| !! | ATTTCCTCAAAAAAAAAAGA+AGG | + | chr2.4:73411842-73411861 | MS.gene01224:intron | 20.0% |
| !! | CATAATATACATGAACTTAA+GGG | + | chr2.4:73413675-73413694 | MS.gene01224:intron | 20.0% |
| !! | TATAAATAAGGACAAAGATA+AGG | - | chr2.4:73413982-73414001 | None:intergenic | 20.0% |
| !! | TCATTTCTCAAAGAAAAATA+TGG | + | chr2.4:73412584-73412603 | MS.gene01224:intron | 20.0% |
| !! | TTAAGTGATTGTATTTGATT+AGG | + | chr2.4:73413406-73413425 | MS.gene01224:intron | 20.0% |
| !! | TTATTGTGTTGTAGATAATT+GGG | + | chr2.4:73413192-73413211 | MS.gene01224:intron | 20.0% |
| !! | TTTATTGTGTTGTAGATAAT+TGG | + | chr2.4:73413191-73413210 | MS.gene01224:intron | 20.0% |
| !!! | ACATTCTAAAAAAAGTTCAA+AGG | - | chr2.4:73413723-73413742 | None:intergenic | 20.0% |
| !!! | ATGTGGTCTAATTTTATTAT+GGG | + | chr2.4:73412802-73412821 | MS.gene01224:intron | 20.0% |
| !!! | ATTATATCTTTTTCTCATGA+TGG | + | chr2.4:73413378-73413397 | MS.gene01224:intron | 20.0% |
| !!! | TTAACCTTCTTTTTTTTTTG+AGG | - | chr2.4:73411849-73411868 | None:intergenic | 20.0% |
| !!! | TTGAACTTTTTTTAGAATGT+TGG | + | chr2.4:73413723-73413742 | MS.gene01224:intron | 20.0% |
| !!! | TTTTCATTGATCAAAAACAA+TGG | + | chr2.4:73412472-73412491 | MS.gene01224:intron | 20.0% |
| ! | AAAATCTATACGTCTATAAG+TGG | + | chr2.4:73413769-73413788 | MS.gene01224:intron | 25.0% |
| ! | AAAATTGATATGTGACAAGA+AGG | - | chr2.4:73411429-73411448 | None:intergenic | 25.0% |
| ! | AATAACTCCAACAAAACATA+TGG | - | chr2.4:73412726-73412745 | None:intergenic | 25.0% |
| ! | AATCCTTCTAAACATACTTA+CGG | - | chr2.4:73412318-73412337 | None:intergenic | 25.0% |
| ! | AGTATTAATATGTGGATGTT+TGG | + | chr2.4:73414092-73414111 | MS.gene01224:intron | 25.0% |
| ! | ATTACTTAATTATTACCTGG+TGG | - | chr2.4:73411101-73411120 | None:intergenic | 25.0% |
| ! | TAAACAAGTAACGATATTAG+TGG | - | chr2.4:73411718-73411737 | None:intergenic | 25.0% |
| ! | TAGATACAAGGATAATGAAT+TGG | + | chr2.4:73412635-73412654 | MS.gene01224:intron | 25.0% |
| ! | TATCAGGGATAATTTATGTA+GGG | + | chr2.4:73412945-73412964 | MS.gene01224:intron | 25.0% |
| ! | TCTCATTAATTGTGGTATTT+AGG | + | chr2.4:73412064-73412083 | MS.gene01224:intron | 25.0% |
| ! | TGTTTGACAAGAAAAATGAT+AGG | + | chr2.4:73411163-73411182 | MS.gene01224:intron | 25.0% |
| ! | TTAAATTACGGTTAGTGATA+CGG | - | chr2.4:73413571-73413590 | None:intergenic | 25.0% |
| !! | ATTGCTCATTTTCTTTTTAG+AGG | - | chr2.4:73412411-73412430 | None:intergenic | 25.0% |
| !! | CATGTGGTCTAATTTTATTA+TGG | + | chr2.4:73412801-73412820 | MS.gene01224:intron | 25.0% |
| !! | GAATATTTGTTGAAAAGACA+TGG | + | chr2.4:73410841-73410860 | MS.gene01224:CDS | 25.0% |
| !! | GGAAAAAGCTAATATTTTCT+TGG | - | chr2.4:73411697-73411716 | None:intergenic | 25.0% |
| !! | GTCACTTAACAAACATATTT+TGG | - | chr2.4:73413117-73413136 | None:intergenic | 25.0% |
| !! | TAATGGTGTGATTGAATTTT+AGG | + | chr2.4:73411392-73411411 | MS.gene01224:intron | 25.0% |
| !! | TGTGGTCTAATTTTATTATG+GGG | + | chr2.4:73412803-73412822 | MS.gene01224:intron | 25.0% |
| !!! | CTAGTTTTGACTAATACATA+TGG | + | chr2.4:73412374-73412393 | MS.gene01224:intron | 25.0% |
| !!! | GACAAAAGAGTATTAATATG+TGG | + | chr2.4:73414084-73414103 | MS.gene01224:intron | 25.0% |
| !!! | TAATGATTTTAATTCTCACC+CGG | + | chr2.4:73411866-73411885 | MS.gene01224:intron | 25.0% |
| !!! | TTTTTTTCAAGTAGCCAAAT+GGG | + | chr2.4:73412337-73412356 | MS.gene01224:intron | 25.0% |
| !!! | TTTTTTTTCAAGTAGCCAAA+TGG | + | chr2.4:73412336-73412355 | MS.gene01224:intron | 25.0% |
| AAAACAATGGAGAGAGAAAA+AGG | + | chr2.4:73412485-73412504 | MS.gene01224:intron | 30.0% | |
| AAATCAGAAGATTTGATCCA+TGG | + | chr2.4:73413813-73413832 | MS.gene01224:intron | 30.0% | |
| AAGATGTCAATGTTGAATTC+AGG | - | chr2.4:73413533-73413552 | None:intergenic | 30.0% | |
| AATGAAAAGAGAGAAAAGGA+AGG | - | chr2.4:73412460-73412479 | None:intergenic | 30.0% | |
| AATTCTATCACGCCTTAATT+AGG | + | chr2.4:73411539-73411558 | MS.gene01224:intron | 30.0% | |
| ATGTGCAATTGACCTAATTA+AGG | - | chr2.4:73411554-73411573 | None:intergenic | 30.0% | |
| CTATCAGGGATAATTTATGT+AGG | + | chr2.4:73412944-73412963 | MS.gene01224:intron | 30.0% | |
| GAAATGTTAGTGACATAACA+TGG | + | chr2.4:73413090-73413109 | MS.gene01224:intron | 30.0% | |
| GATAATTTATGTAGGGATTG+GGG | + | chr2.4:73412952-73412971 | MS.gene01224:intron | 30.0% | |
| GATCAATGAAAAGAGAGAAA+AGG | - | chr2.4:73412464-73412483 | None:intergenic | 30.0% | |
| GATGATGTTCATTTCTATGA+TGG | + | chr2.4:73410955-73410974 | MS.gene01224:CDS | 30.0% | |
| GGATAATTTATGTAGGGATT+GGG | + | chr2.4:73412951-73412970 | MS.gene01224:intron | 30.0% | |
| GTTAAGTGACACATACTTAT+TGG | + | chr2.4:73413127-73413146 | MS.gene01224:intron | 30.0% | |
| TAACCGTAAGTATGTTTAGA+AGG | + | chr2.4:73412312-73412331 | MS.gene01224:intron | 30.0% | |
| TACGTACCTGGATTAAATTA+CGG | - | chr2.4:73413583-73413602 | None:intergenic | 30.0% | |
| TAGAAATAAATACCTCATCC+CGG | - | chr2.4:73413340-73413359 | None:intergenic | 30.0% | |
| TGGTTTCTTCACAAAAATGT+TGG | + | chr2.4:73410873-73410892 | MS.gene01224:CDS | 30.0% | |
| ! | ATCAGTACCATATGTTTTGT+TGG | + | chr2.4:73412716-73412735 | MS.gene01224:intron | 30.0% |
| ! | TATATTGCTCTTGTTTGAGT+TGG | - | chr2.4:73414034-73414053 | None:intergenic | 30.0% |
| ! | TATTTGTTGAAAAGACATGG+AGG | + | chr2.4:73410844-73410863 | MS.gene01224:CDS | 30.0% |
| ! | TTTCTGGTCAAATAGTTTAG+TGG | - | chr2.4:73413028-73413047 | None:intergenic | 30.0% |
| !! | AGGTATGCAATTTTAATGTG+TGG | + | chr2.4:73410808-73410827 | MS.gene01224:CDS | 30.0% |
| !! | ATATGGTACTGATTATTGAC+AGG | - | chr2.4:73412709-73412728 | None:intergenic | 30.0% |
| !! | TTGAAGAGTGAAAGTTTTGA+TGG | - | chr2.4:73413311-73413330 | None:intergenic | 30.0% |
| !!! | CTTGGTTTTAATTTATGCTC+CGG | - | chr2.4:73411888-73411907 | None:intergenic | 30.0% |
| !!! | GAGTGTCTTACTTTTTTTTC+TGG | - | chr2.4:73413044-73413063 | None:intergenic | 30.0% |
| !!! | TTGGTTTTAATTTATGCTCC+GGG | - | chr2.4:73411887-73411906 | None:intergenic | 30.0% |
| !!! | TTTTTTCAAGTAGCCAAATG+GGG | + | chr2.4:73412338-73412357 | MS.gene01224:intron | 30.0% |
| AAAAGACATGGAGGTTGTTA+TGG | + | chr2.4:73410853-73410872 | MS.gene01224:CDS | 35.0% | |
| AAAATCCTTGGCATTTGCTT+TGG | + | chr2.4:73411075-73411094 | MS.gene01224:CDS | 35.0% | |
| AAACATGACACTTGATGAGA+CGG | - | chr2.4:73411637-73411656 | None:intergenic | 35.0% | |
| AAGAATAAGAGACACGAAGA+TGG | + | chr2.4:73411293-73411312 | MS.gene01224:intron | 35.0% | |
| AAGGTCAATGTCCATATTCT+TGG | - | chr2.4:73411906-73411925 | None:intergenic | 35.0% | |
| AATTAGACCACATGTCGAAA+AGG | - | chr2.4:73412795-73412814 | None:intergenic | 35.0% | |
| AGAAGATTTGATCCATGGAA+TGG | + | chr2.4:73413818-73413837 | MS.gene01224:intron | 35.0% | |
| AGACTGGAATTGAGATGTTT+AGG | + | chr2.4:73413474-73413493 | MS.gene01224:CDS | 35.0% | |
| AGATTCACACACATTATGTG+TGG | - | chr2.4:73413003-73413022 | None:intergenic | 35.0% | |
| AGGTATGGAAATCACATGTT+GGG | + | chr2.4:73413494-73413513 | MS.gene01224:CDS | 35.0% | |
| ATACCACAATTAATGAGACG+AGG | - | chr2.4:73412062-73412081 | None:intergenic | 35.0% | |
| ATGATTTGATGCATGAGATG+AGG | + | chr2.4:73411786-73411805 | MS.gene01224:intron | 35.0% | |
| CACTAACCGTAATTTAATCC+AGG | + | chr2.4:73413574-73413593 | MS.gene01224:CDS | 35.0% | |
| CTAAACATACTTACGGTTAG+AGG | - | chr2.4:73412311-73412330 | None:intergenic | 35.0% | |
| CTTTGTCTCACATTTCTGAA+AGG | + | chr2.4:73414192-73414211 | MS.gene01224:CDS | 35.0% | |
| GAAGATTTGATCCATGGAAT+GGG | + | chr2.4:73413819-73413838 | MS.gene01224:intron | 35.0% | |
| GGAATTGAGATGTTTAGGTA+TGG | + | chr2.4:73413479-73413498 | MS.gene01224:CDS | 35.0% | |
| GGGATAATTTATGTAGGGAT+TGG | + | chr2.4:73412950-73412969 | MS.gene01224:intron | 35.0% | |
| GTGTGTAAATAATACGTACC+TGG | - | chr2.4:73413595-73413614 | None:intergenic | 35.0% | |
| TAGGTATGGAAATCACATGT+TGG | + | chr2.4:73413493-73413512 | MS.gene01224:CDS | 35.0% | |
| TCCCTCAACAAAAAAATCCT+TGG | + | chr2.4:73411063-73411082 | MS.gene01224:CDS | 35.0% | |
| TGATTTGATGCATGAGATGA+GGG | + | chr2.4:73411787-73411806 | MS.gene01224:intron | 35.0% | |
| TGTCAATGTTGAATTCAGGA+TGG | - | chr2.4:73413529-73413548 | None:intergenic | 35.0% | |
| TGTTAATGAAGAGTTTCCTG+AGG | + | chr2.4:73410930-73410949 | MS.gene01224:CDS | 35.0% | |
| TTTATGAGTCATAGCTCAGT+TGG | + | chr2.4:73412918-73412937 | MS.gene01224:intron | 35.0% | |
| ! | AAACATATTTTCCCCCCATT+TGG | - | chr2.4:73412354-73412373 | None:intergenic | 35.0% |
| ! | ATATGTTCCTTTTCGACATG+TGG | + | chr2.4:73412785-73412804 | MS.gene01224:intron | 35.0% |
| !! | TGCAATTTTAATGTGTGGAG+AGG | + | chr2.4:73410813-73410832 | MS.gene01224:CDS | 35.0% |
| !!! | GCCAAGGATTTTTTTGTTGA+GGG | - | chr2.4:73411067-73411086 | None:intergenic | 35.0% |
| !!! | TATGATGGTTTTGTCATCAC+TGG | + | chr2.4:73410970-73410989 | MS.gene01224:CDS | 35.0% |
| !!! | TGCCAAGGATTTTTTTGTTG+AGG | - | chr2.4:73411068-73411087 | None:intergenic | 35.0% |
| !!! | TTTTTCAAGTAGCCAAATGG+GGG | + | chr2.4:73412339-73412358 | MS.gene01224:intron | 35.0% |
| AAATAAATACCTCATCCCGG+TGG | - | chr2.4:73413337-73413356 | None:intergenic | 40.0% | |
| AAATGAACATCATCGTCCTC+AGG | - | chr2.4:73410949-73410968 | None:intergenic | 40.0% | |
| AAGGCATACATCACAAAGCA+AGG | - | chr2.4:73413963-73413982 | None:intergenic | 40.0% | |
| ACACATTATGTGTGGAGAAG+TGG | - | chr2.4:73412995-73413014 | None:intergenic | 40.0% | |
| ACATTATGTGTGGAGAAGTG+GGG | - | chr2.4:73412993-73413012 | None:intergenic | 40.0% | |
| ACATTTGTGGTTCAGACAGA+CGG | - | chr2.4:73412667-73412686 | None:intergenic | 40.0% | |
| AGGCATACATCACAAAGCAA+GGG | - | chr2.4:73413962-73413981 | None:intergenic | 40.0% | |
| CACAATTAATGAGACGAGGA+GGG | - | chr2.4:73412058-73412077 | None:intergenic | 40.0% | |
| CACATTATGTGTGGAGAAGT+GGG | - | chr2.4:73412994-73413013 | None:intergenic | 40.0% | |
| GATTTGATGCATGAGATGAG+GGG | + | chr2.4:73411788-73411807 | MS.gene01224:intron | 40.0% | |
| TAAGACACTCTCATCATGCA+TGG | + | chr2.4:73413054-73413073 | MS.gene01224:intron | 40.0% | |
| TAGAAAGAGTGAGGAAGAAG+AGG | + | chr2.4:73410788-73410807 | MS.gene01224:CDS | 40.0% | |
| TAGATAATTGGGCGTGCATT+GGG | + | chr2.4:73413203-73413222 | MS.gene01224:intron | 40.0% | |
| TCAATGTGTGAACAAGAGTG+AGG | - | chr2.4:73411041-73411060 | None:intergenic | 40.0% | |
| TGCTTCGCATGTAAAGATGA+AGG | + | chr2.4:73414131-73414150 | MS.gene01224:CDS | 40.0% | |
| TGGGGACATATGTCAGAAAA+TGG | + | chr2.4:73412821-73412840 | MS.gene01224:intron | 40.0% | |
| TTGATGAATCCAAGGGTCAT+TGG | - | chr2.4:73411016-73411035 | None:intergenic | 40.0% | |
| TTTCACTCTTCAAATGCCAC+CGG | + | chr2.4:73413318-73413337 | MS.gene01224:CDS | 40.0% | |
| ! | ACAAAAATGTTGGCTGAGGA+AGG | + | chr2.4:73410883-73410902 | MS.gene01224:CDS | 40.0% |
| ! | AGCATATCTGAATGATGACG+AGG | - | chr2.4:73413623-73413642 | None:intergenic | 40.0% |
| ! | ATGTGGATGTTTGGAATTGC+AGG | + | chr2.4:73414101-73414120 | MS.gene01224:intron | 40.0% |
| ! | ATTGGTTGGTCAGAAAAGAC+TGG | + | chr2.4:73413458-73413477 | MS.gene01224:CDS | 40.0% |
| ! | CTTCACAAAAATGTTGGCTG+AGG | + | chr2.4:73410879-73410898 | MS.gene01224:CDS | 40.0% |
| !! | TGAGGAGTTGATGAATCCAA+GGG | - | chr2.4:73411023-73411042 | None:intergenic | 40.0% |
| !!! | TTTTCAAGTAGCCAAATGGG+GGG | + | chr2.4:73412340-73412359 | MS.gene01224:intron | 40.0% |
| AAGGTGACACATGAGAAAGC+AGG | + | chr2.4:73412271-73412290 | MS.gene01224:intron | 45.0% | |
| AATCACATGTTGGGCATCCA+AGG | + | chr2.4:73413503-73413522 | MS.gene01224:CDS | 45.0% | |
| AGGTGACACATGAGAAAGCA+GGG | + | chr2.4:73412272-73412291 | MS.gene01224:intron | 45.0% | |
| ATGACACTTGATGAGACGGA+GGG | - | chr2.4:73411633-73411652 | None:intergenic | 45.0% | |
| ATTACGAGATCCAGACACAG+AGG | + | chr2.4:73414158-73414177 | MS.gene01224:CDS | 45.0% | |
| CAGATTCTGATCCCATTCCA+TGG | - | chr2.4:73413833-73413852 | None:intergenic | 45.0% | |
| CATCACAAAGCAAGGGGATA+AGG | - | chr2.4:73413955-73413974 | None:intergenic | 45.0% | |
| CATGGAATGGGATCAGAATC+TGG | + | chr2.4:73413831-73413850 | MS.gene01224:intron | 45.0% | |
| CCACAATTAATGAGACGAGG+AGG | - | chr2.4:73412059-73412078 | None:intergenic | 45.0% | |
| CCTCCTCGTCTCATTAATTG+TGG | + | chr2.4:73412056-73412075 | MS.gene01224:intron | 45.0% | |
| CTGAAGCAGAGGTAATTGGT+TGG | + | chr2.4:73413444-73413463 | MS.gene01224:CDS | 45.0% | |
| GGCATACATCACAAAGCAAG+GGG | - | chr2.4:73413961-73413980 | None:intergenic | 45.0% | |
| GTAGATAATTGGGCGTGCAT+TGG | + | chr2.4:73413202-73413221 | MS.gene01224:intron | 45.0% | |
| TGTTGAATTCAGGATGGCCT+TGG | - | chr2.4:73413523-73413542 | None:intergenic | 45.0% | |
| TTCACTCTTCAAATGCCACC+GGG | + | chr2.4:73413319-73413338 | MS.gene01224:CDS | 45.0% | |
| !! | AGCTCAGTTGGTAGCTATCA+GGG | + | chr2.4:73412930-73412949 | MS.gene01224:intron | 45.0% |
| !! | GTGAGGAGTTGATGAATCCA+AGG | - | chr2.4:73411024-73411043 | None:intergenic | 45.0% |
| !! | TAGCTCAGTTGGTAGCTATC+AGG | + | chr2.4:73412929-73412948 | MS.gene01224:intron | 45.0% |
| !!! | AAGTTAAATTTTAATAATTA+AGG | + | chr2.4:73412194-73412213 | MS.gene01224:intron | 5.0% |
| AGATTTGCCTGCTGAAGCAG+AGG | + | chr2.4:73413433-73413452 | MS.gene01224:CDS | 50.0% | |
| AGGGATTGGGGTTCGAACAT+CGG | + | chr2.4:73412964-73412983 | MS.gene01224:intron | 50.0% | |
| ATAATTGGGCGTGCATTGGG+AGG | + | chr2.4:73413206-73413225 | MS.gene01224:CDS | 50.0% | |
| ATGCACATGCCAATGACCCT+TGG | + | chr2.4:73411004-73411023 | MS.gene01224:CDS | 50.0% | |
| CATGACACTTGATGAGACGG+AGG | - | chr2.4:73411634-73411653 | None:intergenic | 50.0% | |
| CCAATTACCTCTGCTTCAGC+AGG | - | chr2.4:73413443-73413462 | None:intergenic | 50.0% | |
| CCTGCTGAAGCAGAGGTAAT+TGG | + | chr2.4:73413440-73413459 | MS.gene01224:CDS | 50.0% | |
| GGCTGAGGAAGGAGAAACAT+GGG | + | chr2.4:73410894-73410913 | MS.gene01224:CDS | 50.0% | |
| GTGACTCATTGTACTGCACG+TGG | - | chr2.4:73413879-73413898 | None:intergenic | 50.0% | |
| TAATTGGGCGTGCATTGGGA+GGG | + | chr2.4:73413207-73413226 | MS.gene01224:CDS | 50.0% | |
| TGGCTGAGGAAGGAGAAACA+TGG | + | chr2.4:73410893-73410912 | MS.gene01224:CDS | 50.0% | |
| ! | GTTTTCCATGCCTCTGTGTC+TGG | - | chr2.4:73414171-73414190 | None:intergenic | 50.0% |
| AAAGTGGTGCGTTCTGGTGC+AGG | + | chr2.4:73413230-73413249 | MS.gene01224:CDS | 55.0% | |
| CTTCAAATGCCACCGGGATG+AGG | + | chr2.4:73413325-73413344 | MS.gene01224:CDS | 55.0% | |
| GAGATCCAGACACAGAGGCA+TGG | + | chr2.4:73414163-73414182 | MS.gene01224:CDS | 55.0% | |
| GGTGGCCAAAGCAAATGCCA+AGG | - | chr2.4:73411083-73411102 | None:intergenic | 55.0% | |
| TGGCATTTGCTTTGGCCACC+AGG | + | chr2.4:73411083-73411102 | MS.gene01224:CDS | 55.0% | |
| ! | TCTGGTGCAGGTTGGGACAT+AGG | + | chr2.4:73413242-73413261 | MS.gene01224:CDS | 55.0% |
| GCGTGCATTGGGAGGGAAAG+TGG | + | chr2.4:73413214-73413233 | MS.gene01224:CDS | 60.0% | |
| GGAGGGAAAGTGGTGCGTTC+TGG | + | chr2.4:73413224-73413243 | MS.gene01224:CDS | 60.0% | |
| GGTGCGTTCTGGTGCAGGTT+GGG | + | chr2.4:73413235-73413254 | MS.gene01224:CDS | 60.0% | |
| TGGTGCGTTCTGGTGCAGGT+TGG | + | chr2.4:73413234-73413253 | MS.gene01224:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 73410784 | 73414224 | 73410784 | ID=MS.gene01224 |
| chr2.4 | mRNA | 73410784 | 73414224 | 73410784 | ID=MS.gene01224.t1;Parent=MS.gene01224 |
| chr2.4 | exon | 73410784 | 73411104 | 73410784 | ID=MS.gene01224.t1.exon1;Parent=MS.gene01224.t1 |
| chr2.4 | CDS | 73410784 | 73411104 | 73410784 | ID=cds.MS.gene01224.t1;Parent=MS.gene01224.t1 |
| chr2.4 | exon | 73413206 | 73413346 | 73413206 | ID=MS.gene01224.t1.exon2;Parent=MS.gene01224.t1 |
| chr2.4 | CDS | 73413206 | 73413346 | 73413206 | ID=cds.MS.gene01224.t1;Parent=MS.gene01224.t1 |
| chr2.4 | exon | 73413428 | 73413595 | 73413428 | ID=MS.gene01224.t1.exon3;Parent=MS.gene01224.t1 |
| chr2.4 | CDS | 73413428 | 73413595 | 73413428 | ID=cds.MS.gene01224.t1;Parent=MS.gene01224.t1 |
| chr2.4 | exon | 73414123 | 73414224 | 73414123 | ID=MS.gene01224.t1.exon4;Parent=MS.gene01224.t1 |
| chr2.4 | CDS | 73414123 | 73414224 | 73414123 | ID=cds.MS.gene01224.t1;Parent=MS.gene01224.t1 |
| Gene Sequence |
| Protein sequence |
