Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90232.t1 | XP_003608377.2 | 98.1 | 264 | 5 | 0 | 1 | 264 | 1 | 264 | 5.40E-151 | 543.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90232.t1 | O82225 | 50.8 | 242 | 117 | 1 | 9 | 248 | 6 | 247 | 9.0e-70 | 265.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90232.t1 | G7JV26 | 98.1 | 264 | 5 | 0 | 1 | 264 | 1 | 264 | 3.9e-151 | 543.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene90232 | 0.80451 | 2.09E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene90232 | 0.800241 | 1.58E-48 | -1.69E-46 |
| MS.gene050384 | MS.gene90232 | 0.845637 | 3.59E-59 | -1.69E-46 |
| MS.gene050386 | MS.gene90232 | 0.847283 | 1.28E-59 | -1.69E-46 |
| MS.gene050437 | MS.gene90232 | 0.817909 | 2.58E-52 | -1.69E-46 |
| MS.gene050689 | MS.gene90232 | 0.824117 | 9.60E-54 | -1.69E-46 |
| MS.gene051343 | MS.gene90232 | 0.808081 | 3.69E-50 | -1.69E-46 |
| MS.gene05134 | MS.gene90232 | 0.812956 | 3.27E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene90232 | 0.80828 | 3.35E-50 | -1.69E-46 |
| MS.gene053590 | MS.gene90232 | 0.873727 | 1.17E-67 | -1.69E-46 |
| MS.gene055162 | MS.gene90232 | 0.804192 | 2.43E-49 | -1.69E-46 |
| MS.gene057234 | MS.gene90232 | 0.821555 | 3.79E-53 | -1.69E-46 |
| MS.gene057694 | MS.gene90232 | 0.807148 | 5.82E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene90232 | 0.80336 | 3.62E-49 | -1.69E-46 |
| MS.gene058054 | MS.gene90232 | 0.813126 | 3.00E-51 | -1.69E-46 |
| MS.gene058055 | MS.gene90232 | 0.834225 | 3.39E-56 | -1.69E-46 |
| MS.gene05978 | MS.gene90232 | 0.810413 | 1.17E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90232 | MS.gene028495 | PPI |
| MS.gene071221 | MS.gene90232 | PPI |
| MS.gene94216 | MS.gene90232 | PPI |
| MS.gene90232 | MS.gene02208 | PPI |
| MS.gene76089 | MS.gene90232 | PPI |
| MS.gene068013 | MS.gene90232 | PPI |
| MS.gene90232 | MS.gene053590 | PPI |
| MS.gene90232 | MS.gene01224 | PPI |
| MS.gene90232 | MS.gene002251 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90232.t1 | MTR_4g093250 | 98.106 | 264 | 5 | 0 | 1 | 264 | 1 | 264 | 0.0 | 536 |
| MS.gene90232.t1 | MTR_5g083210 | 73.092 | 249 | 63 | 2 | 1 | 249 | 1 | 245 | 8.07e-135 | 380 |
| MS.gene90232.t1 | MTR_2g009720 | 58.750 | 240 | 96 | 1 | 9 | 248 | 8 | 244 | 8.22e-102 | 296 |
| MS.gene90232.t1 | MTR_2g009720 | 59.903 | 207 | 80 | 1 | 9 | 215 | 8 | 211 | 9.21e-88 | 261 |
| MS.gene90232.t1 | MTR_5g078650 | 58.000 | 50 | 18 | 1 | 42 | 91 | 54 | 100 | 8.39e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90232.t1 | AT2G23970 | 50.202 | 247 | 121 | 1 | 4 | 248 | 1 | 247 | 4.91e-89 | 265 |
| MS.gene90232.t1 | AT4G30550 | 47.107 | 242 | 125 | 1 | 9 | 247 | 8 | 249 | 6.88e-82 | 246 |
| MS.gene90232.t1 | AT4G30540 | 48.750 | 240 | 123 | 0 | 9 | 248 | 6 | 245 | 2.08e-79 | 240 |
| MS.gene90232.t1 | AT2G23960 | 45.417 | 240 | 129 | 1 | 9 | 246 | 5 | 244 | 4.97e-75 | 229 |
| MS.gene90232.t1 | AT4G30530 | 44.628 | 242 | 132 | 1 | 9 | 248 | 5 | 246 | 3.97e-74 | 226 |
| MS.gene90232.t1 | AT2G23960 | 47.549 | 204 | 105 | 1 | 9 | 210 | 5 | 208 | 4.33e-67 | 207 |
Find 77 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATGTACGGAGGGTATTT+TGG | 0.159436 | 4.2:-19969879 | MS.gene90232:CDS |
| GTGGGAGTGGGAAGAGATTT+GGG | 0.222436 | 4.2:-19969938 | MS.gene90232:CDS |
| CTCTTCCATGCCTCCTTATC+TGG | 0.241065 | 4.2:+19968186 | None:intergenic |
| GGTGGGAGTGGGAAGAGATT+TGG | 0.284552 | 4.2:-19969939 | MS.gene90232:CDS |
| TAGATATGGAGATCACATTA+TGG | 0.306527 | 4.2:-19968464 | MS.gene90232:CDS |
| TGGCATTTGCTTTGGTCATC+AGG | 0.316497 | 4.2:-19969649 | MS.gene90232:intron |
| GGAATAGAAAATATAAATAT+TGG | 0.322855 | 4.2:-19968120 | MS.gene90232:CDS |
| TGGAGGAAGAAGGTGAAAAC+TGG | 0.328016 | 4.2:-19969839 | MS.gene90232:CDS |
| TGTTAATTTGATTAGATACT+TGG | 0.341295 | 4.2:-19968845 | MS.gene90232:intron |
| ATCCCTGTGGCATTGAATAA+TGG | 0.342555 | 4.2:+19968700 | None:intergenic |
| TAGATACTTGGCCGTGCAAT+TGG | 0.364461 | 4.2:-19968833 | MS.gene90232:CDS |
| GGAATTGAGATGTTTAGATA+TGG | 0.367188 | 4.2:-19968478 | MS.gene90232:CDS |
| AAAATCCTTGGCATTTGCTT+TGG | 0.382494 | 4.2:-19969657 | MS.gene90232:CDS |
| AGATTCAATTCATCATCCTT+TGG | 0.389173 | 4.2:+19969786 | None:intergenic |
| TGAAAACTGGGATGTGTATA+AGG | 0.406855 | 4.2:-19969826 | MS.gene90232:CDS |
| TCTCCAACTGGCTGGGACAT+TGG | 0.414581 | 4.2:-19968794 | MS.gene90232:CDS |
| AGATATGGAGATCACATTAT+GGG | 0.414653 | 4.2:-19968463 | MS.gene90232:CDS |
| ATGGAGAAAATGGGTGGGAG+TGG | 0.420979 | 4.2:-19969951 | MS.gene90232:CDS |
| GGTCGTTATTGTGAAAGAAA+TGG | 0.428460 | 4.2:-19968141 | MS.gene90232:CDS |
| TGAATAATGGAAAGCTTCGT+TGG | 0.450003 | 4.2:+19968713 | None:intergenic |
| TGGGAGTGGGAAGAGATTTG+GGG | 0.472039 | 4.2:-19969937 | MS.gene90232:CDS |
| GACATGAACAAGAAAATCCT+TGG | 0.480295 | 4.2:-19969669 | MS.gene90232:CDS |
| TTTCCATTATTCAATGCCAC+AGG | 0.486719 | 4.2:-19968703 | MS.gene90232:CDS |
| TGAAGGAGAAGGCTGGTATG+TGG | 0.491137 | 4.2:-19968212 | MS.gene90232:CDS |
| TGGGGTATTTGTGAGAATGT+TGG | 0.492454 | 4.2:-19969859 | MS.gene90232:CDS |
| TGGAGAAAATGGGTGGGAGT+GGG | 0.495317 | 4.2:-19969950 | MS.gene90232:CDS |
| AAGGTGACTCGATCTCCAAC+TGG | 0.496252 | 4.2:-19968806 | MS.gene90232:CDS |
| TGACTCGATCTCCAACTGGC+TGG | 0.497560 | 4.2:-19968802 | MS.gene90232:CDS |
| GACTCGATCTCCAACTGGCT+GGG | 0.497877 | 4.2:-19968801 | MS.gene90232:CDS |
| GTGAGAATGTTGGAGGAAGA+AGG | 0.500993 | 4.2:-19969849 | MS.gene90232:CDS |
| GCAATCACTTCAGCCTTGGC+AGG | 0.507796 | 4.2:+19968517 | None:intergenic |
| TGCTATGAGATTGAAGGAGA+AGG | 0.513622 | 4.2:-19968223 | MS.gene90232:CDS |
| GACAAAGGAGATGGCAAAGA+GGG | 0.513633 | 4.2:+19968749 | None:intergenic |
| AGGGTGATAATGTTATGTTT+CGG | 0.519404 | 4.2:+19968768 | None:intergenic |
| ATACTTGGCCGTGCAATTGG+AGG | 0.519944 | 4.2:-19968830 | MS.gene90232:CDS |
| TGGTATGTGGGAGCCAGATA+AGG | 0.526816 | 4.2:-19968199 | MS.gene90232:CDS |
| ATTGCTAAATCAGATAAGAC+TGG | 0.527568 | 4.2:-19968499 | MS.gene90232:CDS |
| TTTAGCAATCACTTCAGCCT+TGG | 0.530782 | 4.2:+19968513 | None:intergenic |
| TAGAGTACTCAGGATGACCT+TGG | 0.533908 | 4.2:+19968437 | None:intergenic |
| TATTCAATGCCACAGGGATG+AGG | 0.540762 | 4.2:-19968696 | MS.gene90232:intron |
| GATGAATTGAATCTGTATGA+TGG | 0.549776 | 4.2:-19969777 | MS.gene90232:CDS |
| TGAAATTTCGCTGAATAAGA+CGG | 0.555005 | 4.2:+19968389 | None:intergenic |
| ATAGAAAATATAAATATTGG+TGG | 0.558147 | 4.2:-19968117 | MS.gene90232:CDS |
| GCTAAGAGAGCTACCTGCCA+AGG | 0.562053 | 4.2:-19968530 | MS.gene90232:CDS |
| TCAAGAGAAGACAAAGGAGA+TGG | 0.563452 | 4.2:+19968740 | None:intergenic |
| ACTATGCATCAGCTTCCTCA+AGG | 0.566000 | 4.2:-19968163 | MS.gene90232:CDS |
| ACACCAATGTCCCAGCCAGT+TGG | 0.568855 | 4.2:+19968791 | None:intergenic |
| GAAGGAGAAGGCTGGTATGT+GGG | 0.577034 | 4.2:-19968211 | MS.gene90232:CDS |
| GAATATGTGAAGAAAATGTA+CGG | 0.585607 | 4.2:-19969891 | MS.gene90232:CDS |
| TGGCCGTGCAATTGGAGGGA+AGG | 0.591128 | 4.2:-19968825 | MS.gene90232:CDS |
| TACTTGGCCGTGCAATTGGA+GGG | 0.593875 | 4.2:-19968829 | MS.gene90232:CDS |
| GATCACATTATGGGAATCCA+AGG | 0.596532 | 4.2:-19968454 | MS.gene90232:CDS |
| ATGAGATTGAAGGAGAAGGC+TGG | 0.598435 | 4.2:-19968219 | MS.gene90232:CDS |
| ATGTGAAGAAAATGTACGGA+GGG | 0.598596 | 4.2:-19969887 | MS.gene90232:CDS |
| AGACAAAGGAGATGGCAAAG+AGG | 0.600946 | 4.2:+19968748 | None:intergenic |
| ATGCACATGGAAATGATACA+TGG | 0.606888 | 4.2:-19969728 | MS.gene90232:CDS |
| TTAAGGATGGAGAAAATGGG+TGG | 0.607618 | 4.2:-19969957 | None:intergenic |
| TCACCTTCCCTCCAATTGCA+CGG | 0.609277 | 4.2:+19968822 | None:intergenic |
| TAAGGATGGAGAAAATGGGT+GGG | 0.609645 | 4.2:-19969956 | None:intergenic |
| TTCCATTATTCAATGCCACA+GGG | 0.610578 | 4.2:-19968702 | MS.gene90232:CDS |
| GGGAGCCAGATAAGGAGGCA+TGG | 0.620410 | 4.2:-19968191 | MS.gene90232:CDS |
| GGTATTTGTGAGAATGTTGG+AGG | 0.624181 | 4.2:-19969856 | MS.gene90232:CDS |
| GGAAGTTCAAGAGAAGACAA+AGG | 0.628531 | 4.2:+19968734 | None:intergenic |
| GGAGGAAGAAGGTGAAAACT+GGG | 0.629153 | 4.2:-19969838 | MS.gene90232:CDS |
| CTATGCATCAGCTTCCTCAA+GGG | 0.636887 | 4.2:-19968162 | MS.gene90232:CDS |
| AGAATGTCTTTAGAGTACTC+AGG | 0.643445 | 4.2:+19968427 | None:intergenic |
| TATGTGGGAGCCAGATAAGG+AGG | 0.645828 | 4.2:-19968196 | MS.gene90232:CDS |
| GATGACCAAAGCAAATGCCA+AGG | 0.653162 | 4.2:+19969652 | None:intergenic |
| GGCGCGTGGAGAGTTTCCAA+AGG | 0.654333 | 4.2:-19969802 | MS.gene90232:CDS |
| TATTCAGCGAAATTTCATCA+CGG | 0.662548 | 4.2:-19968383 | MS.gene90232:intron |
| TATGTGAAGAAAATGTACGG+AGG | 0.666492 | 4.2:-19969888 | MS.gene90232:CDS |
| TTTCACAATAACGACCCTTG+AGG | 0.678121 | 4.2:+19968148 | None:intergenic |
| TGCACATGGAAATGATACAT+GGG | 0.699531 | 4.2:-19969727 | MS.gene90232:CDS |
| GATGTGTATAAGGTGGCGCG+TGG | 0.734044 | 4.2:-19969816 | MS.gene90232:CDS |
| GGTAGTTGTAGTGATGCACA+TGG | 0.738222 | 4.2:-19969741 | MS.gene90232:CDS |
| GTACACACACCTCATCCCTG+TGG | 0.760386 | 4.2:+19968687 | None:intergenic |
| AAACTGGGATGTGTATAAGG+TGG | 0.767268 | 4.2:-19969823 | MS.gene90232:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAGGAATA+GGG | - | chr4.2:19968573-19968592 | MS.gene90232:intron | 10.0% |
| !! | AATTGTCAAAAAAAAAAAAA+AGG | - | chr4.2:19968566-19968585 | MS.gene90232:intron | 10.0% |
| !! | ATAAATAAATGAAGTAATAA+AGG | + | chr4.2:19969716-19969735 | None:intergenic | 10.0% |
| !! | TATTACTTCATTTATTTATT+TGG | - | chr4.2:19969717-19969736 | MS.gene90232:CDS | 10.0% |
| !!! | ATGATAATGTTAATTTAATA+AGG | + | chr4.2:19969412-19969431 | None:intergenic | 10.0% |
| !! | AAAGTTAATTAATTAATGGT+AGG | + | chr4.2:19969158-19969177 | None:intergenic | 15.0% |
| !! | AAATAACAAAATTACTAGAA+AGG | + | chr4.2:19968541-19968560 | None:intergenic | 15.0% |
| !! | AGTGATTTAATTACTAAATA+TGG | + | chr4.2:19968462-19968481 | None:intergenic | 15.0% |
| !! | ATAGAAAATATAAATATTGG+TGG | - | chr4.2:19969941-19969960 | MS.gene90232:CDS | 15.0% |
| !! | ATATTTAGTAATTAAATCAC+TGG | - | chr4.2:19968461-19968480 | MS.gene90232:CDS | 15.0% |
| !! | CAAAAAAAAAAAAAAGGAAT+AGG | - | chr4.2:19968572-19968591 | MS.gene90232:intron | 15.0% |
| !! | GGAATAGAAAATATAAATAT+TGG | - | chr4.2:19969938-19969957 | MS.gene90232:CDS | 15.0% |
| !! | GTTAAATATTACTAGTAATA+TGG | + | chr4.2:19968861-19968880 | None:intergenic | 15.0% |
| !! | TATTACTAGTAATATTTAAC+CGG | - | chr4.2:19968861-19968880 | MS.gene90232:intron | 15.0% |
| !! | TTAATCGTAATTAAATTTAC+TGG | - | chr4.2:19969789-19969808 | MS.gene90232:CDS | 15.0% |
| !!! | TTTTTTTTTAATCATTACAC+AGG | - | chr4.2:19969454-19969473 | MS.gene90232:intron | 15.0% |
| !! | AAAAAATGAAAGGTTTGAAA+TGG | + | chr4.2:19968517-19968536 | None:intergenic | 20.0% |
| !! | AAAATACCTTAGAAATTCTT+AGG | - | chr4.2:19968659-19968678 | MS.gene90232:intron | 20.0% |
| !! | AATATTACTAGTAATATGGA+TGG | + | chr4.2:19968857-19968876 | None:intergenic | 20.0% |
| !! | AGGAAATAATAATAATTGAG+AGG | - | chr4.2:19969182-19969201 | MS.gene90232:intron | 20.0% |
| !! | GGAAATAATAATAATTGAGA+GGG | - | chr4.2:19969183-19969202 | MS.gene90232:intron | 20.0% |
| !! | TACAAAAAAAGACAAAATCA+TGG | + | chr4.2:19969066-19969085 | None:intergenic | 20.0% |
| !!! | AAAAATGAAAGGTTTGAAAT+GGG | + | chr4.2:19968516-19968535 | None:intergenic | 20.0% |
| !!! | TCTTGATATATTTCTTCTTT+TGG | - | chr4.2:19969492-19969511 | MS.gene90232:intron | 20.0% |
| !!! | TGTTAATTTGATTAGATACT+TGG | - | chr4.2:19969213-19969232 | MS.gene90232:intron | 20.0% |
| ! | CTAGAAAGGTAAAAAATGAA+AGG | + | chr4.2:19968527-19968546 | None:intergenic | 25.0% |
| ! | GAAGTAATAAAGGAAAATGA+TGG | + | chr4.2:19969706-19969725 | None:intergenic | 25.0% |
| ! | GAATATGTGAAGAAAATGTA+CGG | - | chr4.2:19968167-19968186 | MS.gene90232:CDS | 25.0% |
| !!! | AAATTTTGCTATGAGATTGA+AGG | - | chr4.2:19969829-19969848 | MS.gene90232:CDS | 25.0% |
| AATAGGGATAAATACTGATG+TGG | - | chr4.2:19968589-19968608 | MS.gene90232:intron | 30.0% | |
| AGATATGGAGATCACATTAT+GGG | - | chr4.2:19969595-19969614 | MS.gene90232:intron | 30.0% | |
| AGATTCAATTCATCATCCTT+TGG | + | chr4.2:19968275-19968294 | None:intergenic | 30.0% | |
| ATGTGAAGATTGCATCATAT+GGG | + | chr4.2:19968984-19969003 | None:intergenic | 30.0% | |
| ATTGCTAAATCAGATAAGAC+TGG | - | chr4.2:19969559-19969578 | MS.gene90232:intron | 30.0% | |
| CTTCTAATTCAGCTTTACAT+TGG | + | chr4.2:19969099-19969118 | None:intergenic | 30.0% | |
| GATGAATTGAATCTGTATGA+TGG | - | chr4.2:19968281-19968300 | MS.gene90232:intron | 30.0% | |
| GGAATTGAGATGTTTAGATA+TGG | - | chr4.2:19969580-19969599 | MS.gene90232:intron | 30.0% | |
| TAGATATGGAGATCACATTA+TGG | - | chr4.2:19969594-19969613 | MS.gene90232:intron | 30.0% | |
| TAGTGCGTTAAATATTCCAA+AGG | + | chr4.2:19968698-19968717 | None:intergenic | 30.0% | |
| TATTCAGCGAAATTTCATCA+CGG | - | chr4.2:19969675-19969694 | MS.gene90232:CDS | 30.0% | |
| TGAAATTTCGCTGAATAAGA+CGG | + | chr4.2:19969672-19969691 | None:intergenic | 30.0% | |
| ! | AGGGTGATAATGTTATGTTT+CGG | + | chr4.2:19969293-19969312 | None:intergenic | 30.0% |
| ! | TCATTATCTACGTTTTGTCA+AGG | + | chr4.2:19968784-19968803 | None:intergenic | 30.0% |
| !! | TTATGATATTTTGAGCTGTC+CGG | + | chr4.2:19968883-19968902 | None:intergenic | 30.0% |
| AAAATCCTTGGCATTTGCTT+TGG | - | chr4.2:19968401-19968420 | MS.gene90232:CDS | 35.0% | |
| ACCAGTCCTAAGAATTTCTA+AGG | + | chr4.2:19968668-19968687 | None:intergenic | 35.0% | |
| ACCTTAGAAATTCTTAGGAC+TGG | - | chr4.2:19968664-19968683 | MS.gene90232:intron | 35.0% | |
| ATCACACTTGTCTATATGCA+TGG | - | chr4.2:19968958-19968977 | MS.gene90232:intron | 35.0% | |
| ATGCACATGGAAATGATACA+TGG | - | chr4.2:19968330-19968349 | MS.gene90232:intron | 35.0% | |
| ATGTGAAGAAAATGTACGGA+GGG | - | chr4.2:19968171-19968190 | MS.gene90232:CDS | 35.0% | |
| CATGTGAAGATTGCATCATA+TGG | + | chr4.2:19968985-19969004 | None:intergenic | 35.0% | |
| CTTTACGTTACGACATGATA+TGG | - | chr4.2:19969010-19969029 | MS.gene90232:intron | 35.0% | |
| GACATGAACAAGAAAATCCT+TGG | - | chr4.2:19968389-19968408 | MS.gene90232:CDS | 35.0% | |
| GGTCGTTATTGTGAAAGAAA+TGG | - | chr4.2:19969917-19969936 | MS.gene90232:CDS | 35.0% | |
| TATGTGAAGAAAATGTACGG+AGG | - | chr4.2:19968170-19968189 | MS.gene90232:CDS | 35.0% | |
| TGAAAACTGGGATGTGTATA+AGG | - | chr4.2:19968232-19968251 | MS.gene90232:CDS | 35.0% | |
| TGCACATGGAAATGATACAT+GGG | - | chr4.2:19968331-19968350 | MS.gene90232:intron | 35.0% | |
| TTCCATTATTCAATGCCACA+GGG | - | chr4.2:19969356-19969375 | MS.gene90232:intron | 35.0% | |
| TTTCCATTATTCAATGCCAC+AGG | - | chr4.2:19969355-19969374 | MS.gene90232:intron | 35.0% | |
| ! | CGTTACTTTAGTTGTTCGTT+TGG | - | chr4.2:19968809-19968828 | MS.gene90232:CDS | 35.0% |
| ! | TGAATAATGGAAAGCTTCGT+TGG | + | chr4.2:19969348-19969367 | None:intergenic | 35.0% |
| ! | TTACTGGCTAATGTAATGAC+AGG | - | chr4.2:19969805-19969824 | MS.gene90232:CDS | 35.0% |
| !! | AGAATGTCTTTAGAGTACTC+AGG | + | chr4.2:19969634-19969653 | None:intergenic | 35.0% |
| !!! | AAAATGTACGGAGGGTATTT+TGG | - | chr4.2:19968179-19968198 | MS.gene90232:CDS | 35.0% |
| !!! | AAATGTACGGAGGGTATTTT+GGG | - | chr4.2:19968180-19968199 | MS.gene90232:CDS | 35.0% |
| !!! | TATGATGGTTTTGTGATCAC+TGG | - | chr4.2:19968296-19968315 | MS.gene90232:intron | 35.0% |
| AAACTGGGATGTGTATAAGG+TGG | - | chr4.2:19968235-19968254 | MS.gene90232:intron | 40.0% | |
| GATCACATTATGGGAATCCA+AGG | - | chr4.2:19969604-19969623 | MS.gene90232:intron | 40.0% | |
| GGAAGTTCAAGAGAAGACAA+AGG | + | chr4.2:19969327-19969346 | None:intergenic | 40.0% | |
| GGTATTTGTGAGAATGTTGG+AGG | - | chr4.2:19968202-19968221 | MS.gene90232:CDS | 40.0% | |
| TAACTAACAGCTTGACGTGT+CGG | - | chr4.2:19968619-19968638 | MS.gene90232:intron | 40.0% | |
| TCAAGAGAAGACAAAGGAGA+TGG | + | chr4.2:19969321-19969340 | None:intergenic | 40.0% | |
| TGCTATGAGATTGAAGGAGA+AGG | - | chr4.2:19969835-19969854 | MS.gene90232:CDS | 40.0% | |
| TTTAGCAATCACTTCAGCCT+TGG | + | chr4.2:19969548-19969567 | None:intergenic | 40.0% | |
| TTTCACAATAACGACCCTTG+AGG | + | chr4.2:19969913-19969932 | None:intergenic | 40.0% | |
| ! | ATCCCTGTGGCATTGAATAA+TGG | + | chr4.2:19969361-19969380 | None:intergenic | 40.0% |
| ! | TGGGGTATTTGTGAGAATGT+TGG | - | chr4.2:19968199-19968218 | MS.gene90232:CDS | 40.0% |
| !!! | AATGTACGGAGGGTATTTTG+GGG | - | chr4.2:19968181-19968200 | MS.gene90232:CDS | 40.0% |
| ACTATGCATCAGCTTCCTCA+AGG | - | chr4.2:19969895-19969914 | MS.gene90232:CDS | 45.0% | |
| AGACAAAGGAGATGGCAAAG+AGG | + | chr4.2:19969313-19969332 | None:intergenic | 45.0% | |
| ATGAGATTGAAGGAGAAGGC+TGG | - | chr4.2:19969839-19969858 | MS.gene90232:CDS | 45.0% | |
| CTATGCATCAGCTTCCTCAA+GGG | - | chr4.2:19969896-19969915 | MS.gene90232:CDS | 45.0% | |
| GACAAAGGAGATGGCAAAGA+GGG | + | chr4.2:19969312-19969331 | None:intergenic | 45.0% | |
| GATGACCAAAGCAAATGCCA+AGG | + | chr4.2:19968409-19968428 | None:intergenic | 45.0% | |
| GGAGGAAGAAGGTGAAAACT+GGG | - | chr4.2:19968220-19968239 | MS.gene90232:CDS | 45.0% | |
| GGTAGTTGTAGTGATGCACA+TGG | - | chr4.2:19968317-19968336 | MS.gene90232:intron | 45.0% | |
| GTGAGAATGTTGGAGGAAGA+AGG | - | chr4.2:19968209-19968228 | MS.gene90232:CDS | 45.0% | |
| TAGATACTTGGCCGTGCAAT+TGG | - | chr4.2:19969225-19969244 | MS.gene90232:intron | 45.0% | |
| TATTCAATGCCACAGGGATG+AGG | - | chr4.2:19969362-19969381 | MS.gene90232:intron | 45.0% | |
| TGGAGGAAGAAGGTGAAAAC+TGG | - | chr4.2:19968219-19968238 | MS.gene90232:CDS | 45.0% | |
| TGGCATTTGCTTTGGTCATC+AGG | - | chr4.2:19968409-19968428 | MS.gene90232:CDS | 45.0% | |
| ! | TAGAGTACTCAGGATGACCT+TGG | + | chr4.2:19969624-19969643 | None:intergenic | 45.0% |
| !! | TTAATTAATTAACTTTATAA+AGG | - | chr4.2:19969162-19969181 | MS.gene90232:intron | 5.0% |
| !! | TTATAAAGTTAATTAATTAA+TGG | + | chr4.2:19969162-19969181 | None:intergenic | 5.0% |
| AAGGTGACTCGATCTCCAAC+TGG | - | chr4.2:19969252-19969271 | MS.gene90232:intron | 50.0% | |
| ATACTTGGCCGTGCAATTGG+AGG | - | chr4.2:19969228-19969247 | MS.gene90232:intron | 50.0% | |
| ATGGAGAAAATGGGTGGGAG+TGG | - | chr4.2:19968107-19968126 | MS.gene90232:CDS | 50.0% | |
| CTCTTCCATGCCTCCTTATC+TGG | + | chr4.2:19969875-19969894 | None:intergenic | 50.0% | |
| GAAGGAGAAGGCTGGTATGT+GGG | - | chr4.2:19969847-19969866 | MS.gene90232:CDS | 50.0% | |
| GTGGGAGTGGGAAGAGATTT+GGG | - | chr4.2:19968120-19968139 | MS.gene90232:CDS | 50.0% | |
| TACTTGGCCGTGCAATTGGA+GGG | - | chr4.2:19969229-19969248 | MS.gene90232:intron | 50.0% | |
| TATGTGGGAGCCAGATAAGG+AGG | - | chr4.2:19969862-19969881 | MS.gene90232:CDS | 50.0% | |
| TCACCTTCCCTCCAATTGCA+CGG | + | chr4.2:19969239-19969258 | None:intergenic | 50.0% | |
| TGAAGGAGAAGGCTGGTATG+TGG | - | chr4.2:19969846-19969865 | MS.gene90232:CDS | 50.0% | |
| TGGAGAAAATGGGTGGGAGT+GGG | - | chr4.2:19968108-19968127 | MS.gene90232:CDS | 50.0% | |
| TGGGAGTGGGAAGAGATTTG+GGG | - | chr4.2:19968121-19968140 | MS.gene90232:CDS | 50.0% | |
| TGGTATGTGGGAGCCAGATA+AGG | - | chr4.2:19969859-19969878 | MS.gene90232:CDS | 50.0% | |
| !! | AGGACTGGTTCTCTCTCCTT+TGG | - | chr4.2:19968679-19968698 | MS.gene90232:intron | 50.0% |
| ACACCAATGTCCCAGCCAGT+TGG | + | chr4.2:19969270-19969289 | None:intergenic | 55.0% | |
| GACTCGATCTCCAACTGGCT+GGG | - | chr4.2:19969257-19969276 | MS.gene90232:intron | 55.0% | |
| GATGTGTATAAGGTGGCGCG+TGG | - | chr4.2:19968242-19968261 | MS.gene90232:intron | 55.0% | |
| GCAATCACTTCAGCCTTGGC+AGG | + | chr4.2:19969544-19969563 | None:intergenic | 55.0% | |
| GCTAAGAGAGCTACCTGCCA+AGG | - | chr4.2:19969528-19969547 | MS.gene90232:intron | 55.0% | |
| GGTGGGAGTGGGAAGAGATT+TGG | - | chr4.2:19968119-19968138 | MS.gene90232:CDS | 55.0% | |
| GTACACACACCTCATCCCTG+TGG | + | chr4.2:19969374-19969393 | None:intergenic | 55.0% | |
| TCTCCAACTGGCTGGGACAT+TGG | - | chr4.2:19969264-19969283 | MS.gene90232:intron | 55.0% | |
| TGACTCGATCTCCAACTGGC+TGG | - | chr4.2:19969256-19969275 | MS.gene90232:intron | 55.0% | |
| GGCGCGTGGAGAGTTTCCAA+AGG | - | chr4.2:19968256-19968275 | MS.gene90232:intron | 60.0% | |
| GGGAGCCAGATAAGGAGGCA+TGG | - | chr4.2:19969867-19969886 | MS.gene90232:CDS | 60.0% | |
| TGGCCGTGCAATTGGAGGGA+AGG | - | chr4.2:19969233-19969252 | MS.gene90232:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 19968107 | 19969973 | 19968107 | ID=MS.gene90232 |
| chr4.2 | mRNA | 19968107 | 19969973 | 19968107 | ID=MS.gene90232.t1;Parent=MS.gene90232 |
| chr4.2 | exon | 19969650 | 19969973 | 19969650 | ID=MS.gene90232.t1.exon1;Parent=MS.gene90232.t1 |
| chr4.2 | CDS | 19969650 | 19969973 | 19969650 | ID=cds.MS.gene90232.t1;Parent=MS.gene90232.t1 |
| chr4.2 | exon | 19968697 | 19968852 | 19968697 | ID=MS.gene90232.t1.exon2;Parent=MS.gene90232.t1 |
| chr4.2 | CDS | 19968697 | 19968852 | 19968697 | ID=cds.MS.gene90232.t1;Parent=MS.gene90232.t1 |
| chr4.2 | exon | 19968384 | 19968551 | 19968384 | ID=MS.gene90232.t1.exon3;Parent=MS.gene90232.t1 |
| chr4.2 | CDS | 19968384 | 19968551 | 19968384 | ID=cds.MS.gene90232.t1;Parent=MS.gene90232.t1 |
| chr4.2 | exon | 19968107 | 19968253 | 19968107 | ID=MS.gene90232.t1.exon4;Parent=MS.gene90232.t1 |
| chr4.2 | CDS | 19968107 | 19968253 | 19968107 | ID=cds.MS.gene90232.t1;Parent=MS.gene90232.t1 |
| Gene Sequence |
| Protein sequence |
