AlfalfaGEDB | MS.gene90232

M. sativa cultivar XinJiangDaYe / MS.gene90232

KEGG: K22314
GO: -
PFAM: PF00117.31

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90232.t1	XP_003608377.2	98.1	264	5	0	1	264	1	264	5.40E-151	543.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90232.t1	O82225	50.8	242	117	1	9	248	6	247	9.0e-70	265.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90232.t1	G7JV26	98.1	264	5	0	1	264	1	264	3.9e-151	543.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049255	MS.gene90232	0.80451	2.09E-49	-1.69E-46
MS.gene050277	MS.gene90232	0.800241	1.58E-48	-1.69E-46
MS.gene050384	MS.gene90232	0.845637	3.59E-59	-1.69E-46
MS.gene050386	MS.gene90232	0.847283	1.28E-59	-1.69E-46
MS.gene050437	MS.gene90232	0.817909	2.58E-52	-1.69E-46
MS.gene050689	MS.gene90232	0.824117	9.60E-54	-1.69E-46
MS.gene05134	MS.gene90232	0.812956	3.27E-51	-1.69E-46
MS.gene051343	MS.gene90232	0.808081	3.69E-50	-1.69E-46
MS.gene052947	MS.gene90232	0.80828	3.35E-50	-1.69E-46
MS.gene053590	MS.gene90232	0.873727	1.17E-67	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene068013	MS.gene90232	PPI
MS.gene071221	MS.gene90232	PPI
MS.gene76089	MS.gene90232	PPI
MS.gene90232	MS.gene028495	PPI
MS.gene90232	MS.gene02208	PPI
MS.gene90232	MS.gene053590	PPI
MS.gene90232	MS.gene01224	PPI
MS.gene90232	MS.gene002251	PPI
MS.gene94216	MS.gene90232	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90232.t1	MTR_4g093250	98.106	264	5	0	1	264	1	264	0.0	536
MS.gene90232.t1	MTR_5g083210	73.092	249	63	2	1	249	1	245	8.07e-135	380
MS.gene90232.t1	MTR_2g009720	58.750	240	96	1	9	248	8	244	8.22e-102	296
MS.gene90232.t1	MTR_2g009720	59.903	207	80	1	9	215	8	211	9.21e-88	261
MS.gene90232.t1	MTR_5g078650	58.000	50	18	1	42	91	54	100	8.39e-11	58.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90232.t1	AT2G23970	50.202	247	121	1	4	248	1	247	4.91e-89	265
MS.gene90232.t1	AT4G30550	47.107	242	125	1	9	247	8	249	6.88e-82	246
MS.gene90232.t1	AT4G30540	48.750	240	123	0	9	248	6	245	2.08e-79	240
MS.gene90232.t1	AT2G23960	45.417	240	129	1	9	246	5	244	4.97e-75	229
MS.gene90232.t1	AT4G30530	44.628	242	132	1	9	248	5	246	3.97e-74	226
MS.gene90232.t1	AT2G23960	47.549	204	105	1	9	210	5	208	4.33e-67	207

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Find 77 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCTTGGCATTTGCTT+TGG	0.382494	4.2:-19969657	MS.gene90232:CDS
AAAATGTACGGAGGGTATTT+TGG	0.159436	4.2:-19969879	MS.gene90232:CDS
AAACTGGGATGTGTATAAGG+TGG	0.767268	4.2:-19969823	MS.gene90232:CDS
AAGGTGACTCGATCTCCAAC+TGG	0.496252	4.2:-19968806	MS.gene90232:CDS
ACACCAATGTCCCAGCCAGT+TGG	0.568855	4.2:+19968791	None:intergenic
ACTATGCATCAGCTTCCTCA+AGG	0.566000	4.2:-19968163	MS.gene90232:CDS
AGAATGTCTTTAGAGTACTC+AGG	0.643445	4.2:+19968427	None:intergenic
AGACAAAGGAGATGGCAAAG+AGG	0.600946	4.2:+19968748	None:intergenic
AGATATGGAGATCACATTAT+GGG	0.414653	4.2:-19968463	MS.gene90232:CDS
AGATTCAATTCATCATCCTT+TGG	0.389173	4.2:+19969786	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAGGGATAAATACTGATG+TGG	-	chr4.2:19968589-19968608	MS.gene90232:intron	30.0%
AGATATGGAGATCACATTAT+GGG	-	chr4.2:19969595-19969614	MS.gene90232:intron	30.0%
AGATTCAATTCATCATCCTT+TGG	+	chr4.2:19968275-19968294	None:intergenic	30.0%
ATGTGAAGATTGCATCATAT+GGG	+	chr4.2:19968984-19969003	None:intergenic	30.0%
ATTGCTAAATCAGATAAGAC+TGG	-	chr4.2:19969559-19969578	MS.gene90232:intron	30.0%
CTTCTAATTCAGCTTTACAT+TGG	+	chr4.2:19969099-19969118	None:intergenic	30.0%
GATGAATTGAATCTGTATGA+TGG	-	chr4.2:19968281-19968300	MS.gene90232:intron	30.0%
GGAATTGAGATGTTTAGATA+TGG	-	chr4.2:19969580-19969599	MS.gene90232:intron	30.0%
TAGATATGGAGATCACATTA+TGG	-	chr4.2:19969594-19969613	MS.gene90232:intron	30.0%
TAGTGCGTTAAATATTCCAA+AGG	+	chr4.2:19968698-19968717	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	19968107	19969973	19968107	ID=MS.gene90232
chr4.2	mRNA	19968107	19969973	19968107	ID=MS.gene90232.t1;Parent=MS.gene90232
chr4.2	exon	19969650	19969973	19969650	ID=MS.gene90232.t1.exon1;Parent=MS.gene90232.t1
chr4.2	CDS	19969650	19969973	19969650	ID=cds.MS.gene90232.t1;Parent=MS.gene90232.t1
chr4.2	exon	19968697	19968852	19968697	ID=MS.gene90232.t1.exon2;Parent=MS.gene90232.t1
chr4.2	CDS	19968697	19968852	19968697	ID=cds.MS.gene90232.t1;Parent=MS.gene90232.t1
chr4.2	exon	19968384	19968551	19968384	ID=MS.gene90232.t1.exon3;Parent=MS.gene90232.t1
chr4.2	CDS	19968384	19968551	19968384	ID=cds.MS.gene90232.t1;Parent=MS.gene90232.t1
chr4.2	exon	19968107	19968253	19968107	ID=MS.gene90232.t1.exon4;Parent=MS.gene90232.t1
chr4.2	CDS	19968107	19968253	19968107	ID=cds.MS.gene90232.t1;Parent=MS.gene90232.t1

Gene Sequence

>MS.gene90232

ATGGAGAAAATGGGTGGGAGTGGGAAGAGATTTGGGGTGTTGTTATGTGCAGATGATTCAGAATATGTGAAGAAAATGTACGGAGGGTATTTTGGGGTATTTGTGAGAATGTTGGAGGAAGAAGGTGAAAACTGGGATGTGTATAAGGTGGCGCGTGGAGAGTTTCCAAAGGATGATGAATTGAATCTGTATGATGGTTTTGTGATCACTGGTAGTTGTAGTGATGCACATGGAAATGATACATGGGTCTCTCAACTTCTCAATTTGCTTAAGAAATTGAATGACATGAACAAGAAAATCCTTGGCATTTGCTTTGGTCATCAGGTACTAAATCAAATCAAATCAAATCAATCCATATTTAGTAATTAAATCACTGGTTATGTTGATTAATTTAGTCAATTTTCTTCCCATTTCAAACCTTTCATTTTTTACCTTTCTAGTAATTTTGTTATTTAATGCAATTGTCAAAAAAAAAAAAAAGGAATAGGGATAAATACTGATGTGGCACATACTAACTAACAGCTTGACGTGTCGGTGTTTTATCGCGTAAAGAAAATACCTTAGAAATTCTTAGGACTGGTTCTCTCTCCTTTGGAATATTTAACGCACTATACTCTAAAGTAGTTATTTTTCACATTTTTCTTAACTTTTTCTTTTAAAAAATGTTGATATTACCTTGACAAAACGTAGATAATGACTTGACGTTACTTTAGTTGTTCGTTTGGACTATCTATTTGTGTATTCGTTCCATCCATATTACTAGTAATATTTAACCGGACAGCTCAAAATATCATAATAATTAACATTTTCTTTTTAAAAGAATTTTTTGCGACATGTAAATCTTTAAAAGTATCACACTTGTCTATATGCATGGCCCATATGATGCAATCTTCACATGCATCACTTTACGTTACGACATGATATGGTATCAACTCAGTTATATAAGTGCTTTATTACCATGATTTTGTCTTTTTTTGTAACATATGATGCCAATGTAAAGCTGAATTAGAAGTATTTTATTATTAGTATATTTTACGTGCAAGTTTTTCCTACCATTAATTAATTAACTTTATAAAGGAAATAATAATAATTGAGAGGGCTATTTATGTTAATTTGATTAGATACTTGGCCGTGCAATTGGAGGGAAGGTGACTCGATCTCCAACTGGCTGGGACATTGGTGTCCGAAACATAACATTATCACCCTCTTTGCCATCTCCTTTGTCTTCTCTTGAACTTCCAACGAAGCTTTCCATTATTCAATGCCACAGGGATGAGGTGTGTGTACATCTGCACTGCAATACCTTATTAAATTAACATTATCATATCGATCTTTAGTCTCGCATTATTTTTTTTTAATCATTACACAGGATAAGTTAGTTTAGTTCTTGATATATTTCTTCTTTTGGATTTAATTAATTAGCTAAGAGAGCTACCTGCCAAGGCTGAAGTGATTGCTAAATCAGATAAGACTGGAATTGAGATGTTTAGATATGGAGATCACATTATGGGAATCCAAGGTCATCCTGAGTACTCTAAAGACATTCTTTTGAACATTATCGACCGTCTTATTCAGCGAAATTTCATCACGGTATAACCATCATTTTCCTTTATTACTTCATTTATTTATTTGGAATACTAGTATATCACTATTAAAAAAACATTAGAACTATATGATCAAAATTAATCGTAATTAAATTTACTGGCTAATGTAATGACAGGAAAATTTTGCTATGAGATTGAAGGAGAAGGCTGGTATGTGGGAGCCAGATAAGGAGGCATGGAAGAGACTATGCATCAGCTTCCTCAAGGGTCGTTATTGTGAAAGAAATGGAATAGAAAATATAAATATTGGTGGTATATTCTAA

Protein sequence

>MS.gene90232.t1

MEKMGGSGKRFGVLLCADDSEYVKKMYGGYFGVFVRMLEEEGENWDVYKVARGEFPKDDELNLYDGFVITGSCSDAHGNDTWVSQLLNLLKKLNDMNKKILGICFGHQILGRAIGGKVTRSPTGWDIGVRNITLSPSLPSPLSSLELPTKLSIIQCHRDELRELPAKAEVIAKSDKTGIEMFRYGDHIMGIQGHPEYSKDILLNIIDRLIQRNFITENFAMRLKEKAGMWEPDKEAWKRLCISFLKGRYCERNGIENINIGGIF