Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003523.t1 | KEH30515.1 | 88.6 | 254 | 9 | 1 | 1 | 234 | 1 | 254 | 1.80E-95 | 359 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003523.t1 | Q9C9Z8 | 62.7 | 225 | 84 | 0 | 1 | 225 | 1 | 225 | 9.9e-71 | 268.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003523.t1 | A0A072UXC1 | 88.6 | 254 | 9 | 1 | 1 | 234 | 1 | 254 | 1.3e-95 | 359.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024661 | MS.gene003523 | PPI |
| MS.gene21642 | MS.gene003523 | PPI |
| MS.gene22330 | MS.gene003523 | PPI |
| MS.gene072752 | MS.gene003523 | PPI |
| MS.gene003523 | MS.gene06042 | PPI |
| MS.gene55771 | MS.gene003523 | PPI |
| MS.gene048900 | MS.gene003523 | PPI |
| MS.gene91075 | MS.gene003523 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003523.t1 | MTR_4g073800 | 88.583 | 254 | 9 | 1 | 1 | 234 | 1 | 254 | 1.14e-156 | 435 |
| MS.gene003523.t1 | MTR_5g009720 | 70.588 | 221 | 63 | 1 | 1 | 221 | 1 | 219 | 2.04e-110 | 317 |
| MS.gene003523.t1 | MTR_8g099190 | 66.234 | 231 | 66 | 2 | 1 | 221 | 1 | 229 | 5.81e-106 | 306 |
| MS.gene003523.t1 | MTR_8g099190 | 62.963 | 243 | 66 | 3 | 1 | 221 | 1 | 241 | 5.11e-102 | 297 |
| MS.gene003523.t1 | MTR_8g099190 | 60.515 | 233 | 61 | 4 | 1 | 221 | 1 | 214 | 1.59e-91 | 269 |
| MS.gene003523.t1 | MTR_8g099190 | 62.626 | 198 | 62 | 2 | 1 | 188 | 1 | 196 | 9.88e-83 | 246 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003523.t1 | AT3G08560 | 68.889 | 225 | 70 | 0 | 1 | 225 | 1 | 225 | 1.02e-109 | 316 |
| MS.gene003523.t1 | AT4G11150 | 70.455 | 220 | 63 | 1 | 1 | 220 | 1 | 218 | 1.21e-108 | 313 |
| MS.gene003523.t1 | AT1G64200 | 63.559 | 236 | 78 | 2 | 1 | 230 | 1 | 234 | 1.38e-101 | 295 |
| MS.gene003523.t1 | AT1G64200 | 65.198 | 227 | 71 | 2 | 1 | 221 | 1 | 225 | 9.85e-101 | 293 |
| MS.gene003523.t1 | AT1G64200 | 63.978 | 186 | 61 | 1 | 1 | 180 | 1 | 186 | 3.97e-80 | 239 |
Find 39 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCTTTCTCCTCAGCTTCT+TGG | 0.251565 | 4.3:-33143234 | None:intergenic |
| CGATCATCAAGGGCAATCTT+AGG | 0.255958 | 4.3:-33145542 | None:intergenic |
| TATGAAAGATGATGCTAAAA+AGG | 0.304718 | 4.3:+33143887 | MS.gene003523:CDS |
| GCTGAATACATCTCGTATAA+AGG | 0.375872 | 4.3:+33143833 | MS.gene003523:CDS |
| AATAGAAGGATATACCAAAA+AGG | 0.385736 | 4.3:-33145614 | None:intergenic |
| CATCAAAGAAATAATTGTTC+AGG | 0.393403 | 4.3:+33143953 | MS.gene003523:CDS |
| TCGACGAACATCAATCTGTT+TGG | 0.411208 | 4.3:-33143628 | None:intergenic |
| GATCATCAAGGGCAATCTTA+GGG | 0.420043 | 4.3:-33145541 | None:intergenic |
| AGCAAATCCAGCAGATGATT+AGG | 0.425110 | 4.3:+33143203 | MS.gene003523:CDS |
| CTTTCTCCTCAGCTTCTTGG+CGG | 0.494892 | 4.3:-33143231 | None:intergenic |
| TGAAATATCTGTTGCTGCAG+AGG | 0.507699 | 4.3:+33143258 | MS.gene003523:CDS |
| TCACCACCTCATCCTGTGCT+TGG | 0.514232 | 4.3:-33143860 | None:intergenic |
| GGATGAACCTAATCATCTGC+TGG | 0.525749 | 4.3:-33143210 | None:intergenic |
| GTAGTATTGGCCTCAGAGGA+TGG | 0.536883 | 4.3:+33146441 | MS.gene003523:CDS |
| GGTACTCCAAGCACAGGATG+AGG | 0.559843 | 4.3:+33143854 | MS.gene003523:CDS |
| GTAAGGTAATGAACATGCCT+CGG | 0.560359 | 4.3:-33146526 | None:intergenic |
| GGAGATAAACACGATCATCA+AGG | 0.564384 | 4.3:-33145553 | None:intergenic |
| TAGTTCTGGAGGAGTAGTAT+TGG | 0.579965 | 4.3:+33146428 | MS.gene003523:intron |
| TTATTTCAATGTAGTTCTGG+AGG | 0.583060 | 4.3:+33146417 | MS.gene003523:intron |
| GCTTGTTGAGTCGTTGCTAG+AGG | 0.584576 | 4.3:+33145478 | MS.gene003523:CDS |
| TAAGGTAATGAACATGCCTC+GGG | 0.588686 | 4.3:-33146525 | None:intergenic |
| CAGACAAGAGTACGAGCGAA+AGG | 0.590203 | 4.3:+33143605 | MS.gene003523:CDS |
| TATAAAGGTACTCCAAGCAC+AGG | 0.593557 | 4.3:+33143848 | MS.gene003523:CDS |
| CTACATCGTAGTAGCACAGA+TGG | 0.593942 | 4.3:-33145440 | None:intergenic |
| AGAGGATGGAAAGATAGTGT+TGG | 0.594931 | 4.3:+33146455 | MS.gene003523:CDS |
| TGATCAAGTTCCACAAGATG+TGG | 0.600195 | 4.3:-33146707 | None:intergenic |
| GTAGCACAGATGGTTCCCTC+AGG | 0.603951 | 4.3:-33145430 | None:intergenic |
| TGTAGGGTTTACTACGCCTG+AGG | 0.609492 | 4.3:+33145414 | MS.gene003523:intron |
| GAGATAAACACGATCATCAA+GGG | 0.613062 | 4.3:-33145552 | None:intergenic |
| ATCATCAAGGGCAATCTTAG+GGG | 0.623318 | 4.3:-33145540 | None:intergenic |
| GTTCATCCGCCAAGAAGCTG+AGG | 0.630671 | 4.3:+33143225 | MS.gene003523:CDS |
| TCATCAAGGGCAATCTTAGG+GGG | 0.635912 | 4.3:-33145539 | None:intergenic |
| TGTGCTACTACGATGTAGAG+AGG | 0.638418 | 4.3:+33145445 | MS.gene003523:CDS |
| AGGAGTAGTATTGGCCTCAG+AGG | 0.646156 | 4.3:+33146437 | MS.gene003523:CDS |
| GTGCTACTACGATGTAGAGA+GGG | 0.653633 | 4.3:+33145446 | MS.gene003523:CDS |
| CACTATCTTTCCATCCTCTG+AGG | 0.654145 | 4.3:-33146451 | None:intergenic |
| GTAGGGTTTACTACGCCTGA+GGG | 0.660356 | 4.3:+33145415 | MS.gene003523:intron |
| TAGCTTAAAGTTGAACAAGA+CGG | 0.663482 | 4.3:+33146663 | MS.gene003523:CDS |
| ACTCCAAGCACAGGATGAGG+TGG | 0.665263 | 4.3:+33143857 | MS.gene003523:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAACAATTATACATA+TGG | - | chr4.3:33144659-33144678 | None:intergenic | 10.0% |
| !! | ATTTATTTCAATTCAAAATT+AGG | + | chr4.3:33143758-33143777 | MS.gene003523:intron | 10.0% |
| !! | TTAATGAAAATGATAAAATT+TGG | - | chr4.3:33144020-33144039 | None:intergenic | 10.0% |
| !! | TTTAATAATATGAATATCAA+TGG | + | chr4.3:33143481-33143500 | MS.gene003523:intron | 10.0% |
| !!! | ATTTTTTTTTATTGAAAACA+AGG | - | chr4.3:33146193-33146212 | None:intergenic | 10.0% |
| !!! | TGTTTTCAATAAAAAAAAAT+GGG | + | chr4.3:33146193-33146212 | MS.gene003523:intron | 10.0% |
| !!! | TTATAAATAGAAATATTTTC+GGG | + | chr4.3:33144712-33144731 | MS.gene003523:intron | 10.0% |
| !!! | TTGTTTTCAATAAAAAAAAA+TGG | + | chr4.3:33146192-33146211 | MS.gene003523:intron | 10.0% |
| !! | AAATAATAATTAGACAAGTT+AGG | + | chr4.3:33143313-33143332 | MS.gene003523:intron | 15.0% |
| !! | ACGTTTATTTATATAGTTTA+AGG | + | chr4.3:33146022-33146041 | MS.gene003523:intron | 15.0% |
| !! | CATAATATAAAATGTCATAA+TGG | - | chr4.3:33146083-33146102 | None:intergenic | 15.0% |
| !! | TTTAATCAAAGATAAATAGA+AGG | - | chr4.3:33145631-33145650 | None:intergenic | 15.0% |
| !!! | ATTTCTCCTAATTTTTTATA+GGG | + | chr4.3:33144179-33144198 | MS.gene003523:intron | 15.0% |
| !!! | TTATGAAAACTTACTTATTT+TGG | + | chr4.3:33144316-33144335 | MS.gene003523:intron | 15.0% |
| !! | AAAGTTATGTAATCATTACT+TGG | - | chr4.3:33144295-33144314 | None:intergenic | 20.0% |
| !! | TAAAAAATTAGGAGAAATGA+AGG | - | chr4.3:33144177-33144196 | None:intergenic | 20.0% |
| !! | TAATATGAATATCAATGGAT+TGG | + | chr4.3:33143486-33143505 | MS.gene003523:intron | 20.0% |
| !! | TAGAATTTGGGAATTAAATA+TGG | - | chr4.3:33145104-33145123 | None:intergenic | 20.0% |
| !! | TATCATTATGTTCAATTTAG+TGG | + | chr4.3:33145810-33145829 | MS.gene003523:intron | 20.0% |
| !! | TATTTATTTCAATGTAGTTC+TGG | + | chr4.3:33146414-33146433 | MS.gene003523:intron | 20.0% |
| !!! | AAACAATTAGAAAGTACAAA+GGG | - | chr4.3:33145664-33145683 | None:intergenic | 20.0% |
| !!! | AATAAACAAAGTTTTGTCAA+AGG | - | chr4.3:33143787-33143806 | None:intergenic | 20.0% |
| !!! | AGTAAACTTTTACAACAAAT+TGG | - | chr4.3:33146160-33146179 | None:intergenic | 20.0% |
| !!! | ATATAAAATGTCATAATGGA+CGG | - | chr4.3:33146079-33146098 | None:intergenic | 20.0% |
| !!! | ATTATGGTATAACATTTTAG+TGG | - | chr4.3:33145035-33145054 | None:intergenic | 20.0% |
| !!! | CAGTTTTTAATACTTAGTTA+GGG | + | chr4.3:33144100-33144119 | MS.gene003523:intron | 20.0% |
| !!! | CATTTCTCCTAATTTTTTAT+AGG | + | chr4.3:33144178-33144197 | MS.gene003523:intron | 20.0% |
| !!! | TGTGTTTTTTATATTGTTGT+TGG | - | chr4.3:33144053-33144072 | None:intergenic | 20.0% |
| !!! | TTAGCATTCACTTTTTTATA+AGG | + | chr4.3:33144371-33144390 | MS.gene003523:intron | 20.0% |
| ! | AAATCAATGTAATGAGTGTA+AGG | - | chr4.3:33146546-33146565 | None:intergenic | 25.0% |
| ! | AAATTAAGTGTACAAGTCTA+AGG | - | chr4.3:33145199-33145218 | None:intergenic | 25.0% |
| ! | AATAGAAGGATATACCAAAA+AGG | - | chr4.3:33145617-33145636 | None:intergenic | 25.0% |
| ! | AATTAAGTGTACAAGTCTAA+GGG | - | chr4.3:33145198-33145217 | None:intergenic | 25.0% |
| ! | AATTACTTGAAGCTGAAAAA+AGG | + | chr4.3:33143577-33143596 | MS.gene003523:CDS | 25.0% |
| ! | AATTGTTCGATTAAGATGTA+TGG | - | chr4.3:33145765-33145784 | None:intergenic | 25.0% |
| ! | AATTTATTGCATGTGTTTGT+AGG | + | chr4.3:33145397-33145416 | MS.gene003523:intron | 25.0% |
| ! | ATTTATTGCATGTGTTTGTA+GGG | + | chr4.3:33145398-33145417 | MS.gene003523:intron | 25.0% |
| ! | CATCAAAGAAATAATTGTTC+AGG | + | chr4.3:33143953-33143972 | MS.gene003523:CDS | 25.0% |
| ! | GATAAGAATAAAGAGATAGA+GGG | - | chr4.3:33145254-33145273 | None:intergenic | 25.0% |
| ! | TACCTTAATTGTTAGTGAAA+AGG | + | chr4.3:33146585-33146604 | MS.gene003523:intron | 25.0% |
| ! | TATCAATTAAAAATCAACGC+TGG | - | chr4.3:33143419-33143438 | None:intergenic | 25.0% |
| ! | TATCTGATTGGTATATGTAA+AGG | - | chr4.3:33144947-33144966 | None:intergenic | 25.0% |
| ! | TATGAAAGATGATGCTAAAA+AGG | + | chr4.3:33143887-33143906 | MS.gene003523:CDS | 25.0% |
| ! | TCTCTACTATTAAGAAGTAA+GGG | + | chr4.3:33145891-33145910 | MS.gene003523:intron | 25.0% |
| ! | TGATAAGAATAAAGAGATAG+AGG | - | chr4.3:33145255-33145274 | None:intergenic | 25.0% |
| ! | TTAATTGGATACTGTTTGTT+TGG | - | chr4.3:33145155-33145174 | None:intergenic | 25.0% |
| !! | AAAAGCAATAGAAAGTACAA+AGG | - | chr4.3:33145722-33145741 | None:intergenic | 25.0% |
| !! | AAAGCAATAGAAAGTACAAA+GGG | - | chr4.3:33145721-33145740 | None:intergenic | 25.0% |
| !! | AACCTTTTCACTAACAATTA+AGG | - | chr4.3:33146590-33146609 | None:intergenic | 25.0% |
| !! | AGTTAGGGTTAATTAATTTG+TGG | + | chr4.3:33144115-33144134 | MS.gene003523:intron | 25.0% |
| !! | ATATACTTTACGGACTAAAT+TGG | + | chr4.3:33145939-33145958 | MS.gene003523:intron | 25.0% |
| !! | CAAACAATTAGAAAGTACAA+AGG | - | chr4.3:33145665-33145684 | None:intergenic | 25.0% |
| !! | CAATTGTTGTGATTCATTTT+AGG | + | chr4.3:33143533-33143552 | MS.gene003523:intron | 25.0% |
| !! | GAATTAAATATGGTGATGTT+GGG | - | chr4.3:33145094-33145113 | None:intergenic | 25.0% |
| !! | GCAGTTTTTAATACTTAGTT+AGG | + | chr4.3:33144099-33144118 | MS.gene003523:intron | 25.0% |
| !!! | ATATTTTCTAGTAGCATTGA+AGG | - | chr4.3:33146304-33146323 | None:intergenic | 25.0% |
| !!! | ATTCAAATTCTGGTTCTTAT+GGG | + | chr4.3:33143366-33143385 | MS.gene003523:intron | 25.0% |
| !!! | GAAATTGATGGATTTTGTAT+AGG | - | chr4.3:33145869-33145888 | None:intergenic | 25.0% |
| !!! | GGTTTTTGAAAGGTATTTAT+GGG | + | chr4.3:33144509-33144528 | MS.gene003523:intron | 25.0% |
| !!! | TGTTCAACTCAGTTTTAAAT+TGG | - | chr4.3:33144560-33144579 | None:intergenic | 25.0% |
| ACAAATTGGCATGATAAACA+AGG | - | chr4.3:33146146-33146165 | None:intergenic | 30.0% | |
| AGGATCTATGTATACTACAT+CGG | - | chr4.3:33144462-33144481 | None:intergenic | 30.0% | |
| ATAAAGAGATAGAGGGAAAA+TGG | - | chr4.3:33145247-33145266 | None:intergenic | 30.0% | |
| ATAGTAGAGACTGAAATTGA+TGG | - | chr4.3:33145881-33145900 | None:intergenic | 30.0% | |
| ATGTCGATCAAAAGAGATTA+TGG | - | chr4.3:33145051-33145070 | None:intergenic | 30.0% | |
| CAGCTAGCATTATTAACAAT+TGG | - | chr4.3:33145367-33145386 | None:intergenic | 30.0% | |
| GCAAGACCCTATAAAAAATT+AGG | - | chr4.3:33144188-33144207 | None:intergenic | 30.0% | |
| GGTGAAATTTACATAGCTTA+GGG | + | chr4.3:33145960-33145979 | MS.gene003523:intron | 30.0% | |
| GTCTCTACTATTAAGAAGTA+AGG | + | chr4.3:33145890-33145909 | MS.gene003523:intron | 30.0% | |
| GTGAAATTTACATAGCTTAG+GGG | + | chr4.3:33145961-33145980 | MS.gene003523:intron | 30.0% | |
| TAATTAGACAAGTTAGGTCT+TGG | + | chr4.3:33143319-33143338 | MS.gene003523:intron | 30.0% | |
| TAGCTTAAAGTTGAACAAGA+CGG | + | chr4.3:33146663-33146682 | MS.gene003523:CDS | 30.0% | |
| TGGTGAAATTTACATAGCTT+AGG | + | chr4.3:33145959-33145978 | MS.gene003523:intron | 30.0% | |
| ! | AGGGAAAATGGAGTATTAAA+AGG | - | chr4.3:33145235-33145254 | None:intergenic | 30.0% |
| ! | CACATGGAATCAACATTTTT+GGG | - | chr4.3:33144739-33144758 | None:intergenic | 30.0% |
| ! | GGAATTAAATATGGTGATGT+TGG | - | chr4.3:33145095-33145114 | None:intergenic | 30.0% |
| ! | TATATGTAAAGGTGTAAGGT+TGG | - | chr4.3:33144936-33144955 | None:intergenic | 30.0% |
| ! | TGAGTTGAATCCTTATCAAT+CGG | + | chr4.3:33143392-33143411 | MS.gene003523:intron | 30.0% |
| ! | TTGGTATATGTAAAGGTGTA+AGG | - | chr4.3:33144940-33144959 | None:intergenic | 30.0% |
| ! | TTTTATATTGCCACATCTTG+TGG | + | chr4.3:33146697-33146716 | MS.gene003523:CDS | 30.0% |
| !! | GAAAGGTATTTATGGGTAAT+GGG | + | chr4.3:33144516-33144535 | MS.gene003523:intron | 30.0% |
| !! | GATGGATTTTGTATAGGTTA+AGG | - | chr4.3:33145863-33145882 | None:intergenic | 30.0% |
| !! | GATTCAAATTCTGGTTCTTA+TGG | + | chr4.3:33143365-33143384 | MS.gene003523:intron | 30.0% |
| !! | TGAAAGGTATTTATGGGTAA+TGG | + | chr4.3:33144515-33144534 | MS.gene003523:intron | 30.0% |
| !! | TTATTTCAATGTAGTTCTGG+AGG | + | chr4.3:33146417-33146436 | MS.gene003523:intron | 30.0% |
| !!! | GGGTTTTTGAAAGGTATTTA+TGG | + | chr4.3:33144508-33144527 | MS.gene003523:intron | 30.0% |
| AAAGGAAGGTGATCGTAATA+GGG | - | chr4.3:33145002-33145021 | None:intergenic | 35.0% | |
| AACGAATTACAATGCTCTAG+TGG | - | chr4.3:33144613-33144632 | None:intergenic | 35.0% | |
| AATGCTAACCAATGTCCAAA+GGG | - | chr4.3:33144359-33144378 | None:intergenic | 35.0% | |
| ATCTATGTATACTACATCGG+AGG | - | chr4.3:33144459-33144478 | None:intergenic | 35.0% | |
| CAAAAACCAATCTACCACTA+GGG | - | chr4.3:33145326-33145345 | None:intergenic | 35.0% | |
| CTTTCAAAAACCCCACTATT+AGG | - | chr4.3:33144501-33144520 | None:intergenic | 35.0% | |
| GAGATAAACACGATCATCAA+GGG | - | chr4.3:33145555-33145574 | None:intergenic | 35.0% | |
| GCTGAATACATCTCGTATAA+AGG | + | chr4.3:33143833-33143852 | MS.gene003523:CDS | 35.0% | |
| GGATACTGTTTGTTTGGATA+AGG | - | chr4.3:33145149-33145168 | None:intergenic | 35.0% | |
| GTTTGTTTGGATAAGGAGAA+TGG | - | chr4.3:33145142-33145161 | None:intergenic | 35.0% | |
| TAATAATGCTAGCTGAGACA+GGG | + | chr4.3:33145372-33145391 | MS.gene003523:intron | 35.0% | |
| TACATAGATCCTTGCATTCT+TGG | + | chr4.3:33144470-33144489 | MS.gene003523:intron | 35.0% | |
| TCAACCAAAAAATGACGATG+TGG | + | chr4.3:33145580-33145599 | MS.gene003523:CDS | 35.0% | |
| TCTTGGAATGTCCTAATAGT+GGG | + | chr4.3:33144487-33144506 | MS.gene003523:intron | 35.0% | |
| TGTATAGGTTAAGGACTACT+TGG | - | chr4.3:33145854-33145873 | None:intergenic | 35.0% | |
| TTAATAATGCTAGCTGAGAC+AGG | + | chr4.3:33145371-33145390 | MS.gene003523:intron | 35.0% | |
| TTCTTGGAATGTCCTAATAG+TGG | + | chr4.3:33144486-33144505 | MS.gene003523:intron | 35.0% | |
| ! | ACACAATTTCGTGGGTTAAT+TGG | - | chr4.3:33145170-33145189 | None:intergenic | 35.0% |
| ! | ATATGGTGATGTTGGGTAAA+TGG | - | chr4.3:33145087-33145106 | None:intergenic | 35.0% |
| ! | GCACATGGAATCAACATTTT+TGG | - | chr4.3:33144740-33144759 | None:intergenic | 35.0% |
| ! | TAGAAAGTACAAAGGGTTCA+TGG | - | chr4.3:33145657-33145676 | None:intergenic | 35.0% |
| !! | AACATTTTAGTGGCAAGGTA+TGG | - | chr4.3:33145025-33145044 | None:intergenic | 35.0% |
| !! | ACTTGGTAGAAGTATCTGAT+TGG | - | chr4.3:33144959-33144978 | None:intergenic | 35.0% |
| !! | CAGTTGGCTTGAAAACAATT+TGG | - | chr4.3:33144906-33144925 | None:intergenic | 35.0% |
| !! | CTAATAGTGGGGTTTTTGAA+AGG | + | chr4.3:33144499-33144518 | MS.gene003523:intron | 35.0% |
| !! | GGTATAACATTTTAGTGGCA+AGG | - | chr4.3:33145030-33145049 | None:intergenic | 35.0% |
| !!! | ACATCGTCATTTTTTGGTTG+AGG | - | chr4.3:33145581-33145600 | None:intergenic | 35.0% |
| !!! | CTAGTGGTAGATTGGTTTTT+GGG | + | chr4.3:33145325-33145344 | MS.gene003523:intron | 35.0% |
| !!! | GTATCCACATCGTCATTTTT+TGG | - | chr4.3:33145587-33145606 | None:intergenic | 35.0% |
| AATTTACATAGCTTAGGGGC+TGG | + | chr4.3:33145965-33145984 | MS.gene003523:intron | 40.0% | |
| AGAGGATGGAAAGATAGTGT+TGG | + | chr4.3:33146455-33146474 | MS.gene003523:CDS | 40.0% | |
| AGCAAATCCAGCAGATGATT+AGG | + | chr4.3:33143203-33143222 | MS.gene003523:CDS | 40.0% | |
| ATATGCCCTGAGGATACTAA+TGG | - | chr4.3:33144214-33144233 | None:intergenic | 40.0% | |
| ATCATCAAGGGCAATCTTAG+GGG | - | chr4.3:33145543-33145562 | None:intergenic | 40.0% | |
| CCAAAAACCAATCTACCACT+AGG | - | chr4.3:33145327-33145346 | None:intergenic | 40.0% | |
| CCACTAGGGAGAAAAAGAAA+AGG | - | chr4.3:33145312-33145331 | None:intergenic | 40.0% | |
| CGGCAACAAGATTCAAATTC+TGG | + | chr4.3:33143356-33143375 | MS.gene003523:intron | 40.0% | |
| CTTGGAATGTCCTAATAGTG+GGG | + | chr4.3:33144488-33144507 | MS.gene003523:intron | 40.0% | |
| GAAAGGAAGGTGATCGTAAT+AGG | - | chr4.3:33145003-33145022 | None:intergenic | 40.0% | |
| GAATGCTAACCAATGTCCAA+AGG | - | chr4.3:33144360-33144379 | None:intergenic | 40.0% | |
| GATCATCAAGGGCAATCTTA+GGG | - | chr4.3:33145544-33145563 | None:intergenic | 40.0% | |
| GCTAACCATTAGTATCCTCA+GGG | + | chr4.3:33144206-33144225 | MS.gene003523:intron | 40.0% | |
| GCTTGAAAACAATTTGGTCC+GGG | - | chr4.3:33144900-33144919 | None:intergenic | 40.0% | |
| GGAGATAAACACGATCATCA+AGG | - | chr4.3:33145556-33145575 | None:intergenic | 40.0% | |
| GGCTTGAAAACAATTTGGTC+CGG | - | chr4.3:33144901-33144920 | None:intergenic | 40.0% | |
| GTAAGGTAATGAACATGCCT+CGG | - | chr4.3:33146529-33146548 | None:intergenic | 40.0% | |
| GTCGAGGGTTCATAGAATTT+GGG | - | chr4.3:33145116-33145135 | None:intergenic | 40.0% | |
| GTTTAACGTCCAATACCCTT+TGG | + | chr4.3:33144341-33144360 | MS.gene003523:intron | 40.0% | |
| GTTTGGATAAGGAGAATGGA+GGG | - | chr4.3:33145138-33145157 | None:intergenic | 40.0% | |
| TAAGGTAATGAACATGCCTC+GGG | - | chr4.3:33146528-33146547 | None:intergenic | 40.0% | |
| TAGGACATTCCAAGAATGCA+AGG | - | chr4.3:33144482-33144501 | None:intergenic | 40.0% | |
| TCGACGAACATCAATCTGTT+TGG | - | chr4.3:33143631-33143650 | None:intergenic | 40.0% | |
| TGAAATATCTGTTGCTGCAG+AGG | + | chr4.3:33143258-33143277 | MS.gene003523:CDS | 40.0% | |
| TGATGTTGGGTAAATGGTGT+TGG | - | chr4.3:33145081-33145100 | None:intergenic | 40.0% | |
| TGCTAACCATTAGTATCCTC+AGG | + | chr4.3:33144205-33144224 | MS.gene003523:intron | 40.0% | |
| TGTTTGGATAAGGAGAATGG+AGG | - | chr4.3:33145139-33145158 | None:intergenic | 40.0% | |
| TTAGTATCCTCAGGGCATAT+TGG | + | chr4.3:33144214-33144233 | MS.gene003523:intron | 40.0% | |
| TTTAGTGGCAAGGTATGGAA+AGG | - | chr4.3:33145020-33145039 | None:intergenic | 40.0% | |
| ! | AAAGGTGTAAGGTTGGCATT+GGG | - | chr4.3:33144929-33144948 | None:intergenic | 40.0% |
| ! | AACCAATGTCCAAAGGGTAT+TGG | - | chr4.3:33144353-33144372 | None:intergenic | 40.0% |
| ! | ATGGACTGTTAGGATCAACT+TGG | - | chr4.3:33144976-33144995 | None:intergenic | 40.0% |
| ! | CCTTTTCTTTTTCTCCCTAG+TGG | + | chr4.3:33145309-33145328 | MS.gene003523:intron | 40.0% |
| ! | TAAAGGTGTAAGGTTGGCAT+TGG | - | chr4.3:33144930-33144949 | None:intergenic | 40.0% |
| ! | TGGATACGCATGAACCTTTT+TGG | + | chr4.3:33145600-33145619 | MS.gene003523:CDS | 40.0% |
| ! | TTTTCTCCCTAGTGGTAGAT+TGG | + | chr4.3:33145317-33145336 | MS.gene003523:intron | 40.0% |
| !! | AATAGGGAAGATGGACTGTT+AGG | - | chr4.3:33144986-33145005 | None:intergenic | 40.0% |
| !! | CAATTATGCGAAGCTTTGAG+AGG | - | chr4.3:33144810-33144829 | None:intergenic | 40.0% |
| !! | TAGTTCTGGAGGAGTAGTAT+TGG | + | chr4.3:33146428-33146447 | MS.gene003523:intron | 40.0% |
| !! | TATAAAGGTACTCCAAGCAC+AGG | + | chr4.3:33143848-33143867 | MS.gene003523:CDS | 40.0% |
| !!! | CCTAGTGGTAGATTGGTTTT+TGG | + | chr4.3:33145324-33145343 | MS.gene003523:intron | 40.0% |
| !!! | CGTCATTTTTTGGTTGAGGT+GGG | - | chr4.3:33145577-33145596 | None:intergenic | 40.0% |
| !!! | TCGTCATTTTTTGGTTGAGG+TGG | - | chr4.3:33145578-33145597 | None:intergenic | 40.0% |
| ATGAAGGTGACGATCAGACA+AGG | - | chr4.3:33144161-33144180 | None:intergenic | 45.0% | |
| CACTATCTTTCCATCCTCTG+AGG | - | chr4.3:33146454-33146473 | None:intergenic | 45.0% | |
| CGATCATCAAGGGCAATCTT+AGG | - | chr4.3:33145545-33145564 | None:intergenic | 45.0% | |
| CTACATCGTAGTAGCACAGA+TGG | - | chr4.3:33145443-33145462 | None:intergenic | 45.0% | |
| GCATCAACCCATAACCATTG+AGG | - | chr4.3:33144773-33144792 | None:intergenic | 45.0% | |
| GGATGAACCTAATCATCTGC+TGG | - | chr4.3:33143213-33143232 | None:intergenic | 45.0% | |
| GGGCACTTACACAATTTCGT+GGG | - | chr4.3:33145178-33145197 | None:intergenic | 45.0% | |
| GGTCGAGGGTTCATAGAATT+TGG | - | chr4.3:33145117-33145136 | None:intergenic | 45.0% | |
| GGTGATCGTAATAGGGAAGA+TGG | - | chr4.3:33144995-33145014 | None:intergenic | 45.0% | |
| GTCCAATACCCTTTGGACAT+TGG | + | chr4.3:33144348-33144367 | MS.gene003523:intron | 45.0% | |
| TAGCTTTCTCCTCAGCTTCT+TGG | - | chr4.3:33143237-33143256 | None:intergenic | 45.0% | |
| TCATCAAGGGCAATCTTAGG+GGG | - | chr4.3:33145542-33145561 | None:intergenic | 45.0% | |
| TCCTTAACCAATATGCCCTG+AGG | - | chr4.3:33144224-33144243 | None:intergenic | 45.0% | |
| TCTTGGTCAGAGACATGCAT+CGG | + | chr4.3:33143336-33143355 | MS.gene003523:intron | 45.0% | |
| TGAAAACAATTTGGTCCGGG+TGG | - | chr4.3:33144897-33144916 | None:intergenic | 45.0% | |
| TGGCAAGACAGACTACACAT+GGG | - | chr4.3:33144593-33144612 | None:intergenic | 45.0% | |
| ! | AGGGCACTTACACAATTTCG+TGG | - | chr4.3:33145179-33145198 | None:intergenic | 45.0% |
| ! | GTGCTACTACGATGTAGAGA+GGG | + | chr4.3:33145446-33145465 | MS.gene003523:CDS | 45.0% |
| ! | TCCTCAGGGCATATTGGTTA+AGG | + | chr4.3:33144220-33144239 | MS.gene003523:intron | 45.0% |
| ! | TGTGCTACTACGATGTAGAG+AGG | + | chr4.3:33145445-33145464 | MS.gene003523:CDS | 45.0% |
| ! | TGTTGGGTAAATGGTGTTGG+AGG | - | chr4.3:33145078-33145097 | None:intergenic | 45.0% |
| ! | TTTTCGACAAAAGTTGCCCG+AGG | + | chr4.3:33146509-33146528 | MS.gene003523:CDS | 45.0% |
| !!! | ATATTTCTATTTATAATATA+AGG | - | chr4.3:33144708-33144727 | None:intergenic | 5.0% |
| !!! | ATTATAAATAGAAATATTTT+CGG | + | chr4.3:33144711-33144730 | MS.gene003523:intron | 5.0% |
| !!! | TACAAATAAAAATTTTATTT+TGG | + | chr4.3:33144247-33144266 | MS.gene003523:intron | 5.0% |
| !!! | TTTAATTTTAATATACTTTA+CGG | + | chr4.3:33145929-33145948 | MS.gene003523:intron | 5.0% |
| !!! | TTTATATAGTTTTTTTTTTT+TGG | + | chr4.3:33145996-33146015 | MS.gene003523:intron | 5.0% |
| AACAATTTGGTCCGGGTGGT+TGG | - | chr4.3:33144893-33144912 | None:intergenic | 50.0% | |
| AACCCATAACCATTGAGGCC+GGG | - | chr4.3:33144768-33144787 | None:intergenic | 50.0% | |
| ATAAGGAGAATGGAGGGTCG+AGG | - | chr4.3:33145132-33145151 | None:intergenic | 50.0% | |
| CAACCCATAACCATTGAGGC+CGG | - | chr4.3:33144769-33144788 | None:intergenic | 50.0% | |
| CAACGCTGGTCCGATTGATA+AGG | - | chr4.3:33143405-33143424 | None:intergenic | 50.0% | |
| CTTTCTCCTCAGCTTCTTGG+CGG | - | chr4.3:33143234-33143253 | None:intergenic | 50.0% | |
| GTAGGGTTTACTACGCCTGA+GGG | + | chr4.3:33145415-33145434 | MS.gene003523:intron | 50.0% | |
| GTGGCAAGACAGACTACACA+TGG | - | chr4.3:33144594-33144613 | None:intergenic | 50.0% | |
| GTGGCAAGGTATGGAAAGGA+AGG | - | chr4.3:33145016-33145035 | None:intergenic | 50.0% | |
| TAAGGAGAATGGAGGGTCGA+GGG | - | chr4.3:33145131-33145150 | None:intergenic | 50.0% | |
| TGATTCCATGTGCCATAGCC+CGG | + | chr4.3:33144747-33144766 | MS.gene003523:intron | 50.0% | |
| TGTAGGGTTTACTACGCCTG+AGG | + | chr4.3:33145414-33145433 | MS.gene003523:intron | 50.0% | |
| ! | CAGACAAGAGTACGAGCGAA+AGG | + | chr4.3:33143605-33143624 | MS.gene003523:CDS | 50.0% |
| ! | GCTTGTTGAGTCGTTGCTAG+AGG | + | chr4.3:33145478-33145497 | MS.gene003523:CDS | 50.0% |
| ! | TAAGGTTGGCATTGGGCAGT+TGG | - | chr4.3:33144922-33144941 | None:intergenic | 50.0% |
| !! | AGGAGTAGTATTGGCCTCAG+AGG | + | chr4.3:33146437-33146456 | MS.gene003523:CDS | 50.0% |
| !! | GTAGTATTGGCCTCAGAGGA+TGG | + | chr4.3:33146441-33146460 | MS.gene003523:CDS | 50.0% |
| ACTCCAAGCACAGGATGAGG+TGG | + | chr4.3:33143857-33143876 | MS.gene003523:CDS | 55.0% | |
| AGCCCGGCCTCAATGGTTAT+GGG | + | chr4.3:33144763-33144782 | MS.gene003523:intron | 55.0% | |
| GGTACTCCAAGCACAGGATG+AGG | + | chr4.3:33143854-33143873 | MS.gene003523:CDS | 55.0% | |
| GTAGCACAGATGGTTCCCTC+AGG | - | chr4.3:33145433-33145452 | None:intergenic | 55.0% | |
| GTTCATCCGCCAAGAAGCTG+AGG | + | chr4.3:33143225-33143244 | MS.gene003523:CDS | 55.0% | |
| TAACCATTGAGGCCGGGCTA+TGG | - | chr4.3:33144762-33144781 | None:intergenic | 55.0% | |
| TAGCCCGGCCTCAATGGTTA+TGG | + | chr4.3:33144762-33144781 | MS.gene003523:intron | 55.0% | |
| TCACCACCTCATCCTGTGCT+TGG | - | chr4.3:33143863-33143882 | None:intergenic | 55.0% | |
| GTGCCATAGCCCGGCCTCAA+TGG | + | chr4.3:33144756-33144775 | MS.gene003523:intron | 65.0% | |
| TCGCTCCATCGCCAACCACC+CGG | + | chr4.3:33144879-33144898 | MS.gene003523:intron | 65.0% | |
| TGAGGCCGGGCTATGGCACA+TGG | - | chr4.3:33144755-33144774 | None:intergenic | 65.0% | |
| TTGGTCCGGGTGGTTGGCGA+TGG | - | chr4.3:33144887-33144906 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 33143181 | 33146726 | 33143181 | ID=MS.gene003523 |
| chr4.3 | mRNA | 33143181 | 33146726 | 33143181 | ID=MS.gene003523.t1;Parent=MS.gene003523 |
| chr4.3 | exon | 33143181 | 33143282 | 33143181 | ID=MS.gene003523.t1.exon1;Parent=MS.gene003523.t1 |
| chr4.3 | CDS | 33143181 | 33143282 | 33143181 | ID=cds.MS.gene003523.t1;Parent=MS.gene003523.t1 |
| chr4.3 | exon | 33143555 | 33143655 | 33143555 | ID=MS.gene003523.t1.exon2;Parent=MS.gene003523.t1 |
| chr4.3 | CDS | 33143555 | 33143655 | 33143555 | ID=cds.MS.gene003523.t1;Parent=MS.gene003523.t1 |
| chr4.3 | exon | 33143818 | 33143974 | 33143818 | ID=MS.gene003523.t1.exon3;Parent=MS.gene003523.t1 |
| chr4.3 | CDS | 33143818 | 33143974 | 33143818 | ID=cds.MS.gene003523.t1;Parent=MS.gene003523.t1 |
| chr4.3 | exon | 33145419 | 33145621 | 33145419 | ID=MS.gene003523.t1.exon4;Parent=MS.gene003523.t1 |
| chr4.3 | CDS | 33145419 | 33145621 | 33145419 | ID=cds.MS.gene003523.t1;Parent=MS.gene003523.t1 |
| chr4.3 | exon | 33146431 | 33146534 | 33146431 | ID=MS.gene003523.t1.exon5;Parent=MS.gene003523.t1 |
| chr4.3 | CDS | 33146431 | 33146534 | 33146431 | ID=cds.MS.gene003523.t1;Parent=MS.gene003523.t1 |
| chr4.3 | exon | 33146647 | 33146726 | 33146647 | ID=MS.gene003523.t1.exon6;Parent=MS.gene003523.t1 |
| chr4.3 | CDS | 33146647 | 33146726 | 33146647 | ID=cds.MS.gene003523.t1;Parent=MS.gene003523.t1 |
| Gene Sequence |
| Protein sequence |
