Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048900.t1 | XP_013447151.1 | 96.2 | 239 | 9 | 0 | 1 | 239 | 1 | 239 | 5.90E-120 | 440.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048900.t1 | Q9SWE7 | 77.0 | 239 | 45 | 1 | 1 | 239 | 1 | 229 | 8.9e-93 | 341.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048900.t1 | A0A072TWB9 | 96.2 | 239 | 9 | 0 | 1 | 239 | 1 | 239 | 4.2e-120 | 440.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene048900 | MS.gene90980 | PPI |
| MS.gene048900 | MS.gene072752 | PPI |
| MS.gene048900 | MS.gene21642 | PPI |
| MS.gene048900 | MS.gene44998 | PPI |
| MS.gene048900 | MS.gene057707 | PPI |
| MS.gene048900 | MS.gene024661 | PPI |
| MS.gene048900 | MS.gene06042 | PPI |
| MS.gene048900 | MS.gene22330 | PPI |
| MS.gene048900 | MS.gene91075 | PPI |
| MS.gene048900 | MS.gene87386 | PPI |
| MS.gene048900 | MS.gene55771 | PPI |
| MS.gene048900 | MS.gene003523 | PPI |
| MS.gene048900 | MS.gene52076 | PPI |
| MS.gene048900 | MS.gene28505 | PPI |
| MS.gene048900 | MS.gene011917 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048900.t1 | MTR_8g099190 | 96.234 | 239 | 9 | 0 | 1 | 239 | 1 | 239 | 4.29e-169 | 466 |
| MS.gene048900.t1 | MTR_8g099190 | 91.633 | 251 | 9 | 1 | 1 | 239 | 1 | 251 | 4.79e-165 | 456 |
| MS.gene048900.t1 | MTR_8g099190 | 90.377 | 239 | 8 | 1 | 1 | 239 | 1 | 224 | 5.50e-154 | 427 |
| MS.gene048900.t1 | MTR_5g009720 | 79.167 | 240 | 40 | 1 | 1 | 240 | 1 | 230 | 4.58e-135 | 379 |
| MS.gene048900.t1 | MTR_8g099190 | 95.408 | 196 | 9 | 0 | 1 | 196 | 1 | 196 | 7.08e-135 | 378 |
| MS.gene048900.t1 | MTR_4g073800 | 69.264 | 231 | 59 | 2 | 1 | 229 | 1 | 221 | 2.83e-110 | 318 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048900.t1 | AT4G11150 | 73.418 | 237 | 53 | 1 | 1 | 237 | 1 | 227 | 1.18e-122 | 348 |
| MS.gene048900.t1 | AT1G64200 | 71.548 | 239 | 64 | 1 | 1 | 239 | 1 | 235 | 7.38e-121 | 343 |
| MS.gene048900.t1 | AT1G64200 | 71.429 | 231 | 62 | 1 | 1 | 231 | 1 | 227 | 2.43e-116 | 332 |
| MS.gene048900.t1 | AT3G08560 | 63.866 | 238 | 74 | 2 | 1 | 236 | 1 | 228 | 2.21e-102 | 297 |
| MS.gene048900.t1 | AT1G64200 | 70.312 | 192 | 53 | 1 | 1 | 192 | 1 | 188 | 2.30e-91 | 267 |
Find 38 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAAAAGATCTCATTGTTC+AGG | 0.350211 | 4.2:+4950768 | MS.gene048900:CDS |
| CAGATCCGAAAGCAGCTCTT+TGG | 0.391740 | 4.2:+4953098 | MS.gene048900:intron |
| TTCGTGAGTGTTGTGATGCT+TGG | 0.393565 | 4.2:-4951353 | None:intergenic |
| CAGCTCTGGTGGGGTGGTGT+TGG | 0.395029 | 4.2:+4951785 | MS.gene048900:intron |
| CAATGCAGCTGAATGCTTCT+CGG | 0.400725 | 4.2:+4950611 | MS.gene048900:CDS |
| GGCGGATAAATCTCACCATC+TGG | 0.473875 | 4.2:-4949637 | None:intergenic |
| TCGTGAGTGTTGTGATGCTT+GGG | 0.478089 | 4.2:-4951352 | None:intergenic |
| GCTCACATTCAAAAGTTCCT+TGG | 0.486133 | 4.2:-4950689 | None:intergenic |
| GTGTTGTGATGCTTGGGTGC+AGG | 0.495348 | 4.2:-4951346 | None:intergenic |
| CTTGTCCAAAGAGCTGCTTT+CGG | 0.496240 | 4.2:-4953103 | None:intergenic |
| GTGGTGTTGGCTTCTCGTGA+TGG | 0.512785 | 4.2:+4951798 | MS.gene048900:CDS |
| AATGAAAGAAGTTGCAGCCA+AGG | 0.517165 | 4.2:+4950672 | MS.gene048900:CDS |
| AAATACTCTTGATGCACGGC+TGG | 0.517377 | 4.2:+4951836 | MS.gene048900:CDS |
| CAATATCGAGAAGCTTCAGT+TGG | 0.524663 | 4.2:+4949833 | MS.gene048900:CDS |
| TGGAAAATTCAGCTCTGGTG+GGG | 0.526027 | 4.2:+4951776 | MS.gene048900:intron |
| ACAACACTCACGAACCCTAC+TGG | 0.526388 | 4.2:+4951362 | MS.gene048900:CDS |
| CTTCTGTCTTGTTGAGATGT+CGG | 0.530658 | 4.2:+4951209 | MS.gene048900:CDS |
| TGTGGAAAATTCAGCTCTGG+TGG | 0.539041 | 4.2:+4951774 | MS.gene048900:intron |
| TTGTGGTCAACAATGATCTC+TGG | 0.546406 | 4.2:-4951310 | None:intergenic |
| TGTGCTGGATGCAGCTGCAC+AGG | 0.546828 | 4.2:+4951258 | MS.gene048900:CDS |
| GAACATGAACTTTACCAGTA+GGG | 0.549069 | 4.2:-4951376 | None:intergenic |
| AAAATTCAGCTCTGGTGGGG+TGG | 0.550856 | 4.2:+4951779 | MS.gene048900:intron |
| TATCTTCAACACGGTGATGA+CGG | 0.556951 | 4.2:-4950711 | None:intergenic |
| GATCTCTCTCTCTGCTGAAG+AGG | 0.568633 | 4.2:+4949685 | MS.gene048900:CDS |
| TCGGAAACATGACGTGCACT+TGG | 0.572529 | 4.2:+4951228 | MS.gene048900:CDS |
| TTGTGATGCTTGGGTGCAGG+TGG | 0.576383 | 4.2:-4951343 | None:intergenic |
| CGACATCTCAACAAGACAGA+AGG | 0.583156 | 4.2:-4951208 | None:intergenic |
| GTGGAAAATTCAGCTCTGGT+GGG | 0.597030 | 4.2:+4951775 | MS.gene048900:intron |
| GCACTTGGTAGAACATGTGC+TGG | 0.602448 | 4.2:+4951243 | MS.gene048900:CDS |
| CTCTAAGCAAATCCACCAGA+TGG | 0.604393 | 4.2:+4949622 | MS.gene048900:CDS |
| TGGTCAACAATGATCTCTGG+TGG | 0.640783 | 4.2:-4951307 | None:intergenic |
| AGATCAGACAAGAATATGAG+CGG | 0.642819 | 4.2:+4949874 | MS.gene048900:CDS |
| GGATAAATCTCACCATCTGG+TGG | 0.662922 | 4.2:-4949634 | None:intergenic |
| AGCAGAGAGAGAGATCTCGC+CGG | 0.677723 | 4.2:-4949678 | None:intergenic |
| CATGTAAAATATCTTCAACA+CGG | 0.686965 | 4.2:-4950720 | None:intergenic |
| GTGAAAATACTCTTGATGCA+CGG | 0.687449 | 4.2:+4951832 | MS.gene048900:CDS |
| CAGGTGGAAGATAGACATTG+TGG | 0.702848 | 4.2:-4951327 | None:intergenic |
| TCTTCTCCGAAAATGAACGA+TGG | 0.714255 | 4.2:+4949593 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAAAAAAAAAAAAAC+AGG | - | chr4.2:4949797-4949816 | None:intergenic | 10.0% |
| !! | ATCTACAAATAATATAAAAT+TGG | - | chr4.2:4950920-4950939 | None:intergenic | 10.0% |
| !! | TTTGAAAAAAATTAAGTAAT+TGG | - | chr4.2:4950343-4950362 | None:intergenic | 10.0% |
| !!! | TTTTTTCAAAAAAAAAAATC+CGG | + | chr4.2:4950353-4950372 | MS.gene048900:intron | 10.0% |
| !! | AGACTTCTATTTAAATATTA+AGG | + | chr4.2:4951400-4951419 | MS.gene048900:intron | 15.0% |
| !! | ATTTCAGATATTGAATATAT+TGG | + | chr4.2:4950074-4950093 | MS.gene048900:intron | 15.0% |
| !! | GTACCAAAAAAAAAAAAAAA+AGG | + | chr4.2:4952002-4952021 | MS.gene048900:intron | 15.0% |
| !! | TTCAAATGATAATTATATAC+TGG | + | chr4.2:4951065-4951084 | MS.gene048900:intron | 15.0% |
| !!! | ATTCTAAACTTTTGAATTTT+TGG | + | chr4.2:4952325-4952344 | MS.gene048900:intron | 15.0% |
| !!! | ATTTTATGTATTTGGTTTAT+TGG | + | chr4.2:4952868-4952887 | MS.gene048900:intron | 15.0% |
| !! | ATTGTATAGAATGAAAACTT+TGG | + | chr4.2:4952801-4952820 | MS.gene048900:intron | 20.0% |
| !! | CTAGTATATTCATGAAAAAT+TGG | + | chr4.2:4951002-4951021 | MS.gene048900:intron | 20.0% |
| !! | TGAAATATTGTACGTATTAA+GGG | + | chr4.2:4952123-4952142 | MS.gene048900:intron | 20.0% |
| !! | TGAACAGAATATAATTTGAT+GGG | - | chr4.2:4952477-4952496 | None:intergenic | 20.0% |
| !! | TTAAATATTAAGGAACTGTA+TGG | + | chr4.2:4951410-4951429 | MS.gene048900:intron | 20.0% |
| !! | TTGAAATATTGTACGTATTA+AGG | + | chr4.2:4952122-4952141 | MS.gene048900:intron | 20.0% |
| !! | TTGATATATTCTAATTTCTG+TGG | + | chr4.2:4950562-4950581 | MS.gene048900:intron | 20.0% |
| !!! | AGATTATATTTTGTTGACTT+TGG | + | chr4.2:4952776-4952795 | MS.gene048900:intron | 20.0% |
| !!! | ATGAAAACTTTGGTATTTTT+TGG | + | chr4.2:4952811-4952830 | MS.gene048900:intron | 20.0% |
| !!! | CATATTATTTTCAACTAGAA+AGG | + | chr4.2:4951967-4951986 | MS.gene048900:intron | 20.0% |
| !!! | CTGCCTTTTTTTTTTTTTTT+TGG | - | chr4.2:4952008-4952027 | None:intergenic | 20.0% |
| !!! | TTTTGTTTCTTCTGTTTTAT+GGG | + | chr4.2:4953015-4953034 | MS.gene048900:intron | 20.0% |
| !!! | TTTTTGTTTCTTCTGTTTTA+TGG | + | chr4.2:4953014-4953033 | MS.gene048900:intron | 20.0% |
| ! | AAAGAGAATGATTAGAGAAA+TGG | - | chr4.2:4949716-4949735 | None:intergenic | 25.0% |
| ! | AAATTATATTCTGTTCACCT+TGG | + | chr4.2:4952480-4952499 | MS.gene048900:intron | 25.0% |
| ! | AAGAAAATACACATTGAGTA+AGG | - | chr4.2:4952276-4952295 | None:intergenic | 25.0% |
| ! | AAGTAATTGGATGTAATCAA+AGG | - | chr4.2:4950330-4950349 | None:intergenic | 25.0% |
| ! | AATATAATTTGATGGGAAGT+GGG | - | chr4.2:4952470-4952489 | None:intergenic | 25.0% |
| ! | AATTGGTTGAAATTGAATTC+TGG | + | chr4.2:4950019-4950038 | MS.gene048900:intron | 25.0% |
| ! | AGAAGAAACAAAAAAGAATG+TGG | - | chr4.2:4953008-4953027 | None:intergenic | 25.0% |
| ! | CAAAAAACACAATGAAGATA+CGG | - | chr4.2:4950253-4950272 | None:intergenic | 25.0% |
| ! | CATGTAAAATATCTTCAACA+CGG | - | chr4.2:4950723-4950742 | None:intergenic | 25.0% |
| ! | CTACAAATGATAAAGATACT+TGG | - | chr4.2:4950847-4950866 | None:intergenic | 25.0% |
| ! | CTGATATCTAATATTAAAGC+AGG | - | chr4.2:4951732-4951751 | None:intergenic | 25.0% |
| ! | GTGAACAGAATATAATTTGA+TGG | - | chr4.2:4952478-4952497 | None:intergenic | 25.0% |
| ! | TAATTGAAGTTACAAGTATG+TGG | + | chr4.2:4951125-4951144 | MS.gene048900:intron | 25.0% |
| ! | TACATGTCAGATTAAACTTA+AGG | + | chr4.2:4950418-4950437 | MS.gene048900:intron | 25.0% |
| ! | TATAACATTGAGATTGTGAT+CGG | - | chr4.2:4950054-4950073 | None:intergenic | 25.0% |
| ! | TATTTCCAAAATATGATGTG+TGG | + | chr4.2:4950446-4950465 | MS.gene048900:intron | 25.0% |
| ! | TGATAATTATATACTGGCAT+AGG | + | chr4.2:4951071-4951090 | MS.gene048900:intron | 25.0% |
| !! | AATTGGTGAAAATGATCTTT+TGG | - | chr4.2:4952414-4952433 | None:intergenic | 25.0% |
| !! | AGATTCTTGTTTACACTTAT+CGG | + | chr4.2:4950865-4950884 | MS.gene048900:intron | 25.0% |
| !! | CATGCTAACTTCAATTATTT+TGG | - | chr4.2:4951103-4951122 | None:intergenic | 25.0% |
| !! | GTTGAAGATATTTTACATGT+GGG | + | chr4.2:4950724-4950743 | MS.gene048900:CDS | 25.0% |
| !! | GTTGTCTCATTTTATGTATT+TGG | + | chr4.2:4952860-4952879 | MS.gene048900:intron | 25.0% |
| !! | TATTGTTTCTTCTGTTATGT+GGG | + | chr4.2:4952705-4952724 | MS.gene048900:intron | 25.0% |
| !! | TGTTGAAGATATTTTACATG+TGG | + | chr4.2:4950723-4950742 | MS.gene048900:CDS | 25.0% |
| !! | TTACTCAATGTGTATTTTCT+TGG | + | chr4.2:4952275-4952294 | MS.gene048900:intron | 25.0% |
| !! | TTATTGTTTCTTCTGTTATG+TGG | + | chr4.2:4952704-4952723 | MS.gene048900:intron | 25.0% |
| !! | TTGATTAGTTACACATATTC+TGG | + | chr4.2:4951479-4951498 | MS.gene048900:intron | 25.0% |
| !! | TTTAGTTGGTTTATTAGTCT+TGG | + | chr4.2:4952575-4952594 | MS.gene048900:intron | 25.0% |
| !! | TTTGAAACAATCAATGAGAA+TGG | - | chr4.2:4951051-4951070 | None:intergenic | 25.0% |
| !! | TTTTCTTTCGAATTTCAACT+TGG | - | chr4.2:4949908-4949927 | None:intergenic | 25.0% |
| !!! | AGGAAAACTTTGGTATTTTT+TGG | + | chr4.2:4952512-4952531 | MS.gene048900:intron | 25.0% |
| !!! | GTTGTCTCATTTTATTTAGT+TGG | + | chr4.2:4952561-4952580 | MS.gene048900:intron | 25.0% |
| !!! | TTAGTTGGTTTATTAGTCTT+GGG | + | chr4.2:4952576-4952595 | MS.gene048900:intron | 25.0% |
| !!! | TTTTTTTTGTTTCTTCGTGT+AGG | + | chr4.2:4949806-4949825 | MS.gene048900:intron | 25.0% |
| AAAAAACTACCACATATGTG+TGG | + | chr4.2:4952617-4952636 | MS.gene048900:intron | 30.0% | |
| AAAATAAACTGGTTAGCATC+TGG | + | chr4.2:4953046-4953065 | MS.gene048900:intron | 30.0% | |
| AAATGTTAGAAGTTATCAGG+GGG | - | chr4.2:4952241-4952260 | None:intergenic | 30.0% | |
| AAGGTTATTAGTATGCAACA+AGG | + | chr4.2:4952175-4952194 | MS.gene048900:intron | 30.0% | |
| AAGTTGTATTAGTGTGTGTT+TGG | + | chr4.2:4951568-4951587 | MS.gene048900:intron | 30.0% | |
| AGCATAGCTGATTATATTTG+TGG | + | chr4.2:4951756-4951775 | MS.gene048900:intron | 30.0% | |
| AGTTGTATTAGTGTGTGTTT+GGG | + | chr4.2:4951569-4951588 | MS.gene048900:intron | 30.0% | |
| ATATAATTTGATGGGAAGTG+GGG | - | chr4.2:4952469-4952488 | None:intergenic | 30.0% | |
| ATCTATAGCCAAATCTTCAT+TGG | - | chr4.2:4952960-4952979 | None:intergenic | 30.0% | |
| ATGAAAAATTGGAGTGATCA+GGG | + | chr4.2:4951013-4951032 | MS.gene048900:intron | 30.0% | |
| ATTACTTTGACATTTGTCTG+TGG | + | chr4.2:4949996-4950015 | MS.gene048900:intron | 30.0% | |
| CAAATGTTAGAAGTTATCAG+GGG | - | chr4.2:4952242-4952261 | None:intergenic | 30.0% | |
| CAACTAATCACATGTTTAGA+TGG | - | chr4.2:4951705-4951724 | None:intergenic | 30.0% | |
| GAAGAAACAATAAAACGATG+TGG | - | chr4.2:4952697-4952716 | None:intergenic | 30.0% | |
| GAATATAATTTGATGGGAAG+TGG | - | chr4.2:4952471-4952490 | None:intergenic | 30.0% | |
| GCAAATGTTAGAAGTTATCA+GGG | - | chr4.2:4952243-4952262 | None:intergenic | 30.0% | |
| TCAATGAGAATGGTTCATTA+AGG | - | chr4.2:4951041-4951060 | None:intergenic | 30.0% | |
| TCTAAAAGATCTCATTGTTC+AGG | + | chr4.2:4950768-4950787 | MS.gene048900:CDS | 30.0% | |
| TGCAAATGTTAGAAGTTATC+AGG | - | chr4.2:4952244-4952263 | None:intergenic | 30.0% | |
| TGCAAGATCAAACGATAATT+AGG | - | chr4.2:4950819-4950838 | None:intergenic | 30.0% | |
| TGCACAAAAAAAATTACCTC+CGG | - | chr4.2:4951885-4951904 | None:intergenic | 30.0% | |
| ! | AAGTTCCACACATCATATTT+TGG | - | chr4.2:4950454-4950473 | None:intergenic | 30.0% |
| ! | GAACAATGAGATCTTTTAGA+AGG | - | chr4.2:4950768-4950787 | None:intergenic | 30.0% |
| !! | ATAACGGATTGATGAGAATA+TGG | - | chr4.2:4952444-4952463 | None:intergenic | 30.0% |
| !! | TAACGGATTGATGAGAATAT+GGG | - | chr4.2:4952443-4952462 | None:intergenic | 30.0% |
| !!! | AATTTTTGGCTTGAAAACCA+GGG | + | chr4.2:4952339-4952358 | MS.gene048900:intron | 30.0% |
| AAGTTACAAGTATGTGGACT+AGG | + | chr4.2:4951131-4951150 | MS.gene048900:intron | 35.0% | |
| AATGACCAGAAATCAAGCTT+TGG | - | chr4.2:4950167-4950186 | None:intergenic | 35.0% | |
| ACTGTATGGATCTGTTAATC+AGG | + | chr4.2:4951424-4951443 | MS.gene048900:intron | 35.0% | |
| AGAACATGAACTTTACCAGT+AGG | - | chr4.2:4951380-4951399 | None:intergenic | 35.0% | |
| AGATCAGACAAGAATATGAG+CGG | + | chr4.2:4949874-4949893 | MS.gene048900:CDS | 35.0% | |
| ATGGAAGACGTGTTATATGT+CGG | + | chr4.2:4950293-4950312 | MS.gene048900:intron | 35.0% | |
| ATTTGCCAAAGCTTGATTTC+TGG | + | chr4.2:4950159-4950178 | MS.gene048900:intron | 35.0% | |
| ATTTGTGGAAAATTCAGCTC+TGG | + | chr4.2:4951771-4951790 | MS.gene048900:intron | 35.0% | |
| CATGAAAAATTGGAGTGATC+AGG | + | chr4.2:4951012-4951031 | MS.gene048900:intron | 35.0% | |
| CTGTATGGATCTGTTAATCA+GGG | + | chr4.2:4951425-4951444 | MS.gene048900:intron | 35.0% | |
| GAACATGAACTTTACCAGTA+GGG | - | chr4.2:4951379-4951398 | None:intergenic | 35.0% | |
| GAGAATATGGGAGGAATAAT+TGG | - | chr4.2:4952431-4952450 | None:intergenic | 35.0% | |
| GAGCAGTATAGCAAATACAA+AGG | - | chr4.2:4952392-4952411 | None:intergenic | 35.0% | |
| GCATTGAAATTTGATCCTCT+CGG | + | chr4.2:4949759-4949778 | MS.gene048900:intron | 35.0% | |
| GTATTAAGGGTAAGATAGCT+GGG | + | chr4.2:4952136-4952155 | MS.gene048900:intron | 35.0% | |
| GTGAAAATACTCTTGATGCA+CGG | + | chr4.2:4951832-4951851 | MS.gene048900:CDS | 35.0% | |
| TAAATCACGACAGTACCATA+TGG | + | chr4.2:4951600-4951619 | MS.gene048900:intron | 35.0% | |
| TATTAAGGGTAAGATAGCTG+GGG | + | chr4.2:4952137-4952156 | MS.gene048900:intron | 35.0% | |
| TCCTGTTTACGAGAATATGT+GGG | + | chr4.2:4952539-4952558 | MS.gene048900:intron | 35.0% | |
| TGAAAAATTGGAGTGATCAG+GGG | + | chr4.2:4951014-4951033 | MS.gene048900:intron | 35.0% | |
| TGACAATCAAAGTTGGCAAT+AGG | + | chr4.2:4952670-4952689 | MS.gene048900:intron | 35.0% | |
| TGCTCAGTCAACTAAAAACA+TGG | - | chr4.2:4951539-4951558 | None:intergenic | 35.0% | |
| TGGATCATTATCGTGATGTT+CGG | + | chr4.2:4950193-4950212 | MS.gene048900:intron | 35.0% | |
| TTGACATTTGTCTGTGGAAT+TGG | + | chr4.2:4950002-4950021 | MS.gene048900:intron | 35.0% | |
| ! | CAAAGGATGATTTGGCAAAT+AGG | + | chr4.2:4952642-4952661 | MS.gene048900:intron | 35.0% |
| !! | GGGAAGTGTTGAAAATAAAC+TGG | + | chr4.2:4953035-4953054 | MS.gene048900:intron | 35.0% |
| !!! | GAATTTTTGGCTTGAAAACC+AGG | + | chr4.2:4952338-4952357 | MS.gene048900:intron | 35.0% |
| !!! | TTTTTTGGAGTGTCCTATGT+AGG | + | chr4.2:4952826-4952845 | MS.gene048900:intron | 35.0% |
| AATGAAAGAAGTTGCAGCCA+AGG | + | chr4.2:4950672-4950691 | MS.gene048900:CDS | 40.0% | |
| ACCCACATATTCTCGTAAAC+AGG | - | chr4.2:4952543-4952562 | None:intergenic | 40.0% | |
| ACTCACTGCCACAAACAATT+GGG | - | chr4.2:4950588-4950607 | None:intergenic | 40.0% | |
| AGTGTTCCGTAAAAAGCTTC+CGG | + | chr4.2:4951863-4951882 | MS.gene048900:CDS | 40.0% | |
| CAAGAAGCTGAAGAAAAAGC+CGG | + | chr4.2:4949659-4949678 | MS.gene048900:CDS | 40.0% | |
| CAATATCGAGAAGCTTCAGT+TGG | + | chr4.2:4949833-4949852 | MS.gene048900:CDS | 40.0% | |
| CACATGAGTGCAAACATATG+TGG | - | chr4.2:4952932-4952951 | None:intergenic | 40.0% | |
| CATATGTTTGCACTCATGTG+TGG | + | chr4.2:4952932-4952951 | MS.gene048900:intron | 40.0% | |
| CGTATTAAGGGTAAGATAGC+TGG | + | chr4.2:4952135-4952154 | MS.gene048900:intron | 40.0% | |
| GATATCTGGGAGGAAAACTT+TGG | + | chr4.2:4952502-4952521 | MS.gene048900:intron | 40.0% | |
| GCTCACATTCAAAAGTTCCT+TGG | - | chr4.2:4950692-4950711 | None:intergenic | 40.0% | |
| GGATGTAATCAAAGGCAAGT+TGG | - | chr4.2:4950322-4950341 | None:intergenic | 40.0% | |
| GGTCACATGACAATCAAAGT+TGG | + | chr4.2:4952663-4952682 | MS.gene048900:intron | 40.0% | |
| GTCCTGTTTACGAGAATATG+TGG | + | chr4.2:4952538-4952557 | MS.gene048900:intron | 40.0% | |
| TACTCACTGCCACAAACAAT+TGG | - | chr4.2:4950589-4950608 | None:intergenic | 40.0% | |
| TATCTTCAACACGGTGATGA+CGG | - | chr4.2:4950714-4950733 | None:intergenic | 40.0% | |
| TCCTATGTAGGAGAATACGA+GGG | + | chr4.2:4952838-4952857 | MS.gene048900:intron | 40.0% | |
| TCTGTTCACCTTGGATATCT+GGG | + | chr4.2:4952489-4952508 | MS.gene048900:intron | 40.0% | |
| TGGGTGATGTTGAAAATGAC+TGG | + | chr4.2:4952724-4952743 | MS.gene048900:intron | 40.0% | |
| TGTAGAACTGACACTTCTGA+TGG | + | chr4.2:4950274-4950293 | MS.gene048900:intron | 40.0% | |
| TGTAGAGTCGTTTGACCATA+TGG | - | chr4.2:4951618-4951637 | None:intergenic | 40.0% | |
| TTCTGTTCACCTTGGATATC+TGG | + | chr4.2:4952488-4952507 | MS.gene048900:intron | 40.0% | |
| TTGTGGTCAACAATGATCTC+TGG | - | chr4.2:4951313-4951332 | None:intergenic | 40.0% | |
| ! | AAAGGTGCAAACAGAGAGAA+GGG | - | chr4.2:4952374-4952393 | None:intergenic | 40.0% |
| ! | CTTCTGTCTTGTTGAGATGT+CGG | + | chr4.2:4951209-4951228 | MS.gene048900:CDS | 40.0% |
| ! | CTTTTTCTTCAGCTTCTTGG+CGG | - | chr4.2:4949658-4949677 | None:intergenic | 40.0% |
| ! | GAAAATGACTGGTTAGCATC+TGG | + | chr4.2:4952735-4952754 | MS.gene048900:intron | 40.0% |
| ! | TTACCTCCGGAAGCTTTTTA+CGG | - | chr4.2:4951872-4951891 | None:intergenic | 40.0% |
| ! | TTGTGTCACTATCACATGCA+AGG | - | chr4.2:4950121-4950140 | None:intergenic | 40.0% |
| !! | CAGGAGTATTCTGAAAAAGC+AGG | + | chr4.2:4951277-4951296 | MS.gene048900:CDS | 40.0% |
| !! | GATTTCTGGTCATTGTCTAG+TGG | + | chr4.2:4950173-4950192 | MS.gene048900:intron | 40.0% |
| !!! | GGTCTTCTGCTATTTTGTCT+TGG | + | chr4.2:4952889-4952908 | MS.gene048900:intron | 40.0% |
| AAATACTCTTGATGCACGGC+TGG | + | chr4.2:4951836-4951855 | MS.gene048900:CDS | 45.0% | |
| AAGGTGCAAACAGAGAGAAG+GGG | - | chr4.2:4952373-4952392 | None:intergenic | 45.0% | |
| ACCACATATGTGTGGCTCAA+AGG | + | chr4.2:4952625-4952644 | MS.gene048900:intron | 45.0% | |
| ACCCTCGTATTCTCCTACAT+AGG | - | chr4.2:4952842-4952861 | None:intergenic | 45.0% | |
| AGGAGAATTACATTGCCGAG+AGG | - | chr4.2:4949777-4949796 | None:intergenic | 45.0% | |
| CAATGCAGCTGAATGCTTCT+CGG | + | chr4.2:4950611-4950630 | MS.gene048900:CDS | 45.0% | |
| CAGGTGGAAGATAGACATTG+TGG | - | chr4.2:4951330-4951349 | None:intergenic | 45.0% | |
| CGACATCTCAACAAGACAGA+AGG | - | chr4.2:4951211-4951230 | None:intergenic | 45.0% | |
| CGGATTGATGAGAATATGGG+AGG | - | chr4.2:4952440-4952459 | None:intergenic | 45.0% | |
| CGTAAGAAAGCCTTCTCTGA+TGG | + | chr4.2:4951679-4951698 | MS.gene048900:intron | 45.0% | |
| CTCTAAGCAAATCCACCAGA+TGG | + | chr4.2:4949622-4949641 | MS.gene048900:CDS | 45.0% | |
| GGATAAATCTCACCATCTGG+TGG | - | chr4.2:4949637-4949656 | None:intergenic | 45.0% | |
| GTCCTATGTAGGAGAATACG+AGG | + | chr4.2:4952837-4952856 | MS.gene048900:intron | 45.0% | |
| GTGTGGCTCAAAGGATGATT+TGG | + | chr4.2:4952634-4952653 | MS.gene048900:intron | 45.0% | |
| GTGTGGCTCCAATGAAGATT+TGG | + | chr4.2:4952949-4952968 | MS.gene048900:intron | 45.0% | |
| GTTTAGATGGCCATCAGAGA+AGG | - | chr4.2:4951692-4951711 | None:intergenic | 45.0% | |
| TCCTTTGAGCCACACATATG+TGG | - | chr4.2:4952629-4952648 | None:intergenic | 45.0% | |
| TGGTCAACAATGATCTCTGG+TGG | - | chr4.2:4951310-4951329 | None:intergenic | 45.0% | |
| TTCTGTGGCCCAATTGTTTG+TGG | + | chr4.2:4950577-4950596 | MS.gene048900:intron | 45.0% | |
| ! | CAAAGGTGCAAACAGAGAGA+AGG | - | chr4.2:4952375-4952394 | None:intergenic | 45.0% |
| ! | CTTGTCCAAAGAGCTGCTTT+CGG | - | chr4.2:4953106-4953125 | None:intergenic | 45.0% |
| ! | GTGGAAAATTCAGCTCTGGT+GGG | + | chr4.2:4951775-4951794 | MS.gene048900:intron | 45.0% |
| ! | GTTTTCCTCCCAGATATCCA+AGG | - | chr4.2:4952500-4952519 | None:intergenic | 45.0% |
| ! | TCGTGAGTGTTGTGATGCTT+GGG | - | chr4.2:4951355-4951374 | None:intergenic | 45.0% |
| ! | TGGAAAATTCAGCTCTGGTG+GGG | + | chr4.2:4951776-4951795 | MS.gene048900:intron | 45.0% |
| ! | TGTGGAAAATTCAGCTCTGG+TGG | + | chr4.2:4951774-4951793 | MS.gene048900:intron | 45.0% |
| ! | TTCGTGAGTGTTGTGATGCT+TGG | - | chr4.2:4951356-4951375 | None:intergenic | 45.0% |
| !! | CGGCTTTTTCTTCAGCTTCT+TGG | - | chr4.2:4949661-4949680 | None:intergenic | 45.0% |
| AAGGGTAAGATAGCTGGGGA+GGG | + | chr4.2:4952141-4952160 | MS.gene048900:intron | 50.0% | |
| ACAACACTCACGAACCCTAC+TGG | + | chr4.2:4951362-4951381 | MS.gene048900:CDS | 50.0% | |
| CAGATCCGAAAGCAGCTCTT+TGG | + | chr4.2:4953098-4953117 | MS.gene048900:intron | 50.0% | |
| GAGAAGGGGAAAAATCTCCC+TGG | - | chr4.2:4952359-4952378 | None:intergenic | 50.0% | |
| GATCTCTCTCTCTGCTGAAG+AGG | + | chr4.2:4949685-4949704 | MS.gene048900:CDS | 50.0% | |
| GATGGGAAGTGGGGTGATAA+CGG | - | chr4.2:4952460-4952479 | None:intergenic | 50.0% | |
| GCACTTGGTAGAACATGTGC+TGG | + | chr4.2:4951243-4951262 | MS.gene048900:CDS | 50.0% | |
| GGCGGATAAATCTCACCATC+TGG | - | chr4.2:4949640-4949659 | None:intergenic | 50.0% | |
| GTTCACCTTGGATATCTGGG+AGG | + | chr4.2:4952492-4952511 | MS.gene048900:intron | 50.0% | |
| GTTCCGTAAAAAGCTTCCGG+AGG | + | chr4.2:4951866-4951885 | MS.gene048900:CDS | 50.0% | |
| TAAGGGTAAGATAGCTGGGG+AGG | + | chr4.2:4952140-4952159 | MS.gene048900:intron | 50.0% | |
| TCGGAAACATGACGTGCACT+TGG | + | chr4.2:4951228-4951247 | MS.gene048900:CDS | 50.0% | |
| ! | AAAATTCAGCTCTGGTGGGG+TGG | + | chr4.2:4951779-4951798 | MS.gene048900:intron | 50.0% |
| ! | AAGAGCTGCTTTCGGATCTG+TGG | - | chr4.2:4953098-4953117 | None:intergenic | 50.0% |
| !! | ATGAAGCACCGAGAGAGACA+CGG | - | chr4.2:4950399-4950418 | None:intergenic | 50.0% |
| AGCAGAGAGAGAGATCTCGC+CGG | - | chr4.2:4949681-4949700 | None:intergenic | 55.0% | |
| ATAGCTGGGGAGGGACTTCA+GGG | + | chr4.2:4952150-4952169 | MS.gene048900:intron | 55.0% | |
| CACCAGACACACGTTGACAC+CGG | - | chr4.2:4950375-4950394 | None:intergenic | 55.0% | |
| GTGTTGTGATGCTTGGGTGC+AGG | - | chr4.2:4951349-4951368 | None:intergenic | 55.0% | |
| TCTGGTGTCCGTGTCTCTCT+CGG | + | chr4.2:4950388-4950407 | MS.gene048900:intron | 55.0% | |
| TTGTGATGCTTGGGTGCAGG+TGG | - | chr4.2:4951346-4951365 | None:intergenic | 55.0% | |
| ! | ATCCGGTGTCAACGTGTGTC+TGG | + | chr4.2:4950370-4950389 | MS.gene048900:intron | 55.0% |
| !! | GTGGTGTTGGCTTCTCGTGA+TGG | + | chr4.2:4951798-4951817 | MS.gene048900:CDS | 55.0% |
| GATAGCTGGGGAGGGACTTC+AGG | + | chr4.2:4952149-4952168 | MS.gene048900:intron | 60.0% | |
| TGTGCTGGATGCAGCTGCAC+AGG | + | chr4.2:4951258-4951277 | MS.gene048900:CDS | 60.0% | |
| GGGGAGGGACTTCAGGGCTA+AGG | + | chr4.2:4952156-4952175 | MS.gene048900:intron | 65.0% | |
| ! | CAGCTCTGGTGGGGTGGTGT+TGG | + | chr4.2:4951785-4951804 | MS.gene048900:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 4949605 | 4953136 | 4949605 | ID=MS.gene048900 |
| chr4.2 | mRNA | 4949605 | 4953136 | 4949605 | ID=MS.gene048900.t1;Parent=MS.gene048900 |
| chr4.2 | exon | 4949605 | 4949706 | 4949605 | ID=MS.gene048900.t1.exon1;Parent=MS.gene048900.t1 |
| chr4.2 | CDS | 4949605 | 4949706 | 4949605 | ID=cds.MS.gene048900.t1;Parent=MS.gene048900.t1 |
| chr4.2 | exon | 4949828 | 4949928 | 4949828 | ID=MS.gene048900.t1.exon2;Parent=MS.gene048900.t1 |
| chr4.2 | CDS | 4949828 | 4949928 | 4949828 | ID=cds.MS.gene048900.t1;Parent=MS.gene048900.t1 |
| chr4.2 | exon | 4950603 | 4950789 | 4950603 | ID=MS.gene048900.t1.exon3;Parent=MS.gene048900.t1 |
| chr4.2 | CDS | 4950603 | 4950789 | 4950603 | ID=cds.MS.gene048900.t1;Parent=MS.gene048900.t1 |
| chr4.2 | exon | 4951187 | 4951383 | 4951187 | ID=MS.gene048900.t1.exon4;Parent=MS.gene048900.t1 |
| chr4.2 | CDS | 4951187 | 4951383 | 4951187 | ID=cds.MS.gene048900.t1;Parent=MS.gene048900.t1 |
| chr4.2 | exon | 4951788 | 4951887 | 4951788 | ID=MS.gene048900.t1.exon5;Parent=MS.gene048900.t1 |
| chr4.2 | CDS | 4951788 | 4951887 | 4951788 | ID=cds.MS.gene048900.t1;Parent=MS.gene048900.t1 |
| chr4.2 | exon | 4953101 | 4953136 | 4953101 | ID=MS.gene048900.t1.exon6;Parent=MS.gene048900.t1 |
| chr4.2 | CDS | 4953101 | 4953136 | 4953101 | ID=cds.MS.gene048900.t1;Parent=MS.gene048900.t1 |
| Gene Sequence |
| Protein sequence |
