Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91075.t1 | XP_013447151.1 | 96.2 | 239 | 9 | 0 | 1 | 239 | 1 | 239 | 5.90E-120 | 440.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91075.t1 | Q9SWE7 | 77.0 | 239 | 45 | 1 | 1 | 239 | 1 | 229 | 8.9e-93 | 341.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91075.t1 | A0A072TWB9 | 96.2 | 239 | 9 | 0 | 1 | 239 | 1 | 239 | 4.2e-120 | 440.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene91075 | -0.803396 | 3.56E-49 | -1.69E-46 |
| MS.gene050323 | MS.gene91075 | -0.801192 | 1.01E-48 | -1.69E-46 |
| MS.gene050904 | MS.gene91075 | -0.820553 | 6.45E-53 | -1.69E-46 |
| MS.gene051025 | MS.gene91075 | 0.801485 | 8.81E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene91075 | -0.800636 | 1.31E-48 | -1.69E-46 |
| MS.gene052494 | MS.gene91075 | 0.81827 | 2.14E-52 | -1.69E-46 |
| MS.gene053108 | MS.gene91075 | 0.843256 | 1.57E-58 | -1.69E-46 |
| MS.gene053421 | MS.gene91075 | 0.800255 | 1.57E-48 | -1.69E-46 |
| MS.gene054851 | MS.gene91075 | 0.806278 | 8.89E-50 | -1.69E-46 |
| MS.gene055616 | MS.gene91075 | 0.817613 | 3.01E-52 | -1.69E-46 |
| MS.gene05589 | MS.gene91075 | -0.807072 | 6.04E-50 | -1.69E-46 |
| MS.gene056387 | MS.gene91075 | -0.817372 | 3.41E-52 | -1.69E-46 |
| MS.gene056618 | MS.gene91075 | 0.846594 | 1.97E-59 | -1.69E-46 |
| MS.gene057367 | MS.gene91075 | 0.811957 | 5.40E-51 | -1.69E-46 |
| MS.gene05960 | MS.gene91075 | 0.825442 | 4.68E-54 | -1.69E-46 |
| MS.gene05995 | MS.gene91075 | -0.837787 | 4.23E-57 | -1.69E-46 |
| MS.gene05996 | MS.gene91075 | -0.85574 | 5.15E-62 | -1.69E-46 |
| MS.gene06000 | MS.gene91075 | -0.803389 | 3.57E-49 | -1.69E-46 |
| MS.gene06042 | MS.gene91075 | 0.942922 | 3.04E-102 | -1.69E-46 |
| MS.gene06080 | MS.gene91075 | 0.81021 | 1.29E-50 | -1.69E-46 |
| MS.gene061044 | MS.gene91075 | 0.813724 | 2.21E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene91075 | MS.gene057707 | PPI |
| MS.gene91075 | MS.gene44998 | PPI |
| MS.gene91075 | MS.gene22330 | PPI |
| MS.gene55771 | MS.gene91075 | PPI |
| MS.gene91075 | MS.gene90980 | PPI |
| MS.gene072752 | MS.gene91075 | PPI |
| MS.gene91075 | MS.gene87386 | PPI |
| MS.gene91075 | MS.gene06042 | PPI |
| MS.gene048900 | MS.gene91075 | PPI |
| MS.gene90980 | MS.gene91075 | PPI |
| MS.gene91075 | MS.gene55771 | PPI |
| MS.gene91075 | MS.gene072752 | PPI |
| MS.gene91075 | MS.gene21642 | PPI |
| MS.gene91075 | MS.gene003523 | PPI |
| MS.gene91075 | MS.gene52076 | PPI |
| MS.gene024661 | MS.gene91075 | PPI |
| MS.gene91075 | MS.gene28505 | PPI |
| MS.gene91075 | MS.gene011917 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91075.t1 | MTR_8g099190 | 96.234 | 239 | 9 | 0 | 1 | 239 | 1 | 239 | 4.29e-169 | 466 |
| MS.gene91075.t1 | MTR_8g099190 | 91.633 | 251 | 9 | 1 | 1 | 239 | 1 | 251 | 4.79e-165 | 456 |
| MS.gene91075.t1 | MTR_8g099190 | 90.377 | 239 | 8 | 1 | 1 | 239 | 1 | 224 | 5.50e-154 | 427 |
| MS.gene91075.t1 | MTR_5g009720 | 79.167 | 240 | 40 | 1 | 1 | 240 | 1 | 230 | 4.58e-135 | 379 |
| MS.gene91075.t1 | MTR_8g099190 | 95.408 | 196 | 9 | 0 | 1 | 196 | 1 | 196 | 7.08e-135 | 378 |
| MS.gene91075.t1 | MTR_4g073800 | 69.264 | 231 | 59 | 2 | 1 | 229 | 1 | 221 | 2.83e-110 | 318 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91075.t1 | AT4G11150 | 73.418 | 237 | 53 | 1 | 1 | 237 | 1 | 227 | 1.18e-122 | 348 |
| MS.gene91075.t1 | AT1G64200 | 71.548 | 239 | 64 | 1 | 1 | 239 | 1 | 235 | 7.38e-121 | 343 |
| MS.gene91075.t1 | AT1G64200 | 71.429 | 231 | 62 | 1 | 1 | 231 | 1 | 227 | 2.43e-116 | 332 |
| MS.gene91075.t1 | AT3G08560 | 63.866 | 238 | 74 | 2 | 1 | 236 | 1 | 228 | 2.21e-102 | 297 |
| MS.gene91075.t1 | AT1G64200 | 70.312 | 192 | 53 | 1 | 1 | 192 | 1 | 188 | 2.30e-91 | 267 |
Find 38 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAAAAGATCTCATTGTTC+AGG | 0.350211 | 4.2:+4979189 | MS.gene91075:CDS |
| CAGATCCGAAAGCAGCTCTT+TGG | 0.391740 | 4.2:+4981519 | MS.gene91075:intron |
| TTCGTGAGTGTTGTGATGCT+TGG | 0.393565 | 4.2:-4979774 | None:intergenic |
| CAGCTCTGGTGGGGTGGTGT+TGG | 0.395029 | 4.2:+4980206 | MS.gene91075:intron |
| CAATGCAGCTGAATGCTTCT+CGG | 0.400725 | 4.2:+4979032 | MS.gene91075:CDS |
| GGCGGATAAATCTCACCATC+TGG | 0.473875 | 4.2:-4978058 | None:intergenic |
| TCGTGAGTGTTGTGATGCTT+GGG | 0.478089 | 4.2:-4979773 | None:intergenic |
| GCTCACATTCAAAAGTTCCT+TGG | 0.486133 | 4.2:-4979110 | None:intergenic |
| GTGTTGTGATGCTTGGGTGC+AGG | 0.495348 | 4.2:-4979767 | None:intergenic |
| CTTGTCCAAAGAGCTGCTTT+CGG | 0.496240 | 4.2:-4981524 | None:intergenic |
| GTGGTGTTGGCTTCTCGTGA+TGG | 0.512785 | 4.2:+4980219 | MS.gene91075:CDS |
| AATGAAAGAAGTTGCAGCCA+AGG | 0.517165 | 4.2:+4979093 | MS.gene91075:CDS |
| AAATACTCTTGATGCACGGC+TGG | 0.517377 | 4.2:+4980257 | MS.gene91075:CDS |
| CAATATCGAGAAGCTTCAGT+TGG | 0.524663 | 4.2:+4978254 | MS.gene91075:CDS |
| TGGAAAATTCAGCTCTGGTG+GGG | 0.526027 | 4.2:+4980197 | MS.gene91075:intron |
| ACAACACTCACGAACCCTAC+TGG | 0.526388 | 4.2:+4979783 | MS.gene91075:CDS |
| CTTCTGTCTTGTTGAGATGT+CGG | 0.530658 | 4.2:+4979630 | MS.gene91075:CDS |
| TGTGGAAAATTCAGCTCTGG+TGG | 0.539041 | 4.2:+4980195 | MS.gene91075:intron |
| TTGTGGTCAACAATGATCTC+TGG | 0.546406 | 4.2:-4979731 | None:intergenic |
| TGTGCTGGATGCAGCTGCAC+AGG | 0.546828 | 4.2:+4979679 | MS.gene91075:CDS |
| GAACATGAACTTTACCAGTA+GGG | 0.549069 | 4.2:-4979797 | None:intergenic |
| AAAATTCAGCTCTGGTGGGG+TGG | 0.550856 | 4.2:+4980200 | MS.gene91075:intron |
| TATCTTCAACACGGTGATGA+CGG | 0.556951 | 4.2:-4979132 | None:intergenic |
| GATCTCTCTCTCTGCTGAAG+AGG | 0.568633 | 4.2:+4978106 | MS.gene91075:CDS |
| TCGGAAACATGACGTGCACT+TGG | 0.572529 | 4.2:+4979649 | MS.gene91075:CDS |
| TTGTGATGCTTGGGTGCAGG+TGG | 0.576383 | 4.2:-4979764 | None:intergenic |
| CGACATCTCAACAAGACAGA+AGG | 0.583156 | 4.2:-4979629 | None:intergenic |
| GTGGAAAATTCAGCTCTGGT+GGG | 0.597030 | 4.2:+4980196 | MS.gene91075:intron |
| GCACTTGGTAGAACATGTGC+TGG | 0.602448 | 4.2:+4979664 | MS.gene91075:CDS |
| CTCTAAGCAAATCCACCAGA+TGG | 0.604393 | 4.2:+4978043 | MS.gene91075:CDS |
| TGGTCAACAATGATCTCTGG+TGG | 0.640783 | 4.2:-4979728 | None:intergenic |
| AGATCAGACAAGAATATGAG+CGG | 0.642819 | 4.2:+4978295 | MS.gene91075:CDS |
| GGATAAATCTCACCATCTGG+TGG | 0.662922 | 4.2:-4978055 | None:intergenic |
| AGCAGAGAGAGAGATCTCGC+CGG | 0.677723 | 4.2:-4978099 | None:intergenic |
| CATGTAAAATATCTTCAACA+CGG | 0.686965 | 4.2:-4979141 | None:intergenic |
| GTGAAAATACTCTTGATGCA+CGG | 0.687449 | 4.2:+4980253 | MS.gene91075:CDS |
| CAGGTGGAAGATAGACATTG+TGG | 0.702848 | 4.2:-4979748 | None:intergenic |
| TCTTCTCCGAAAATGAACGA+TGG | 0.714255 | 4.2:+4978014 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAAAAAAAAAAAAAC+AGG | - | chr4.2:4978218-4978237 | None:intergenic | 10.0% |
| !! | ATCTACAAATAATATAAAAT+TGG | - | chr4.2:4979341-4979360 | None:intergenic | 10.0% |
| !! | TTTGAAAAAAATTAAGTAAT+TGG | - | chr4.2:4978764-4978783 | None:intergenic | 10.0% |
| !!! | TTTTTTCAAAAAAAAAAATC+CGG | + | chr4.2:4978774-4978793 | MS.gene91075:intron | 10.0% |
| !! | AGACTTCTATTTAAATATTA+AGG | + | chr4.2:4979821-4979840 | MS.gene91075:intron | 15.0% |
| !! | ATTTCAGATATTGAATATAT+TGG | + | chr4.2:4978495-4978514 | MS.gene91075:intron | 15.0% |
| !! | GTACCAAAAAAAAAAAAAAA+AGG | + | chr4.2:4980423-4980442 | MS.gene91075:intron | 15.0% |
| !! | TTCAAATGATAATTATATAC+TGG | + | chr4.2:4979486-4979505 | MS.gene91075:intron | 15.0% |
| !!! | ATTCTAAACTTTTGAATTTT+TGG | + | chr4.2:4980746-4980765 | MS.gene91075:intron | 15.0% |
| !!! | ATTTTATGTATTTGGTTTAT+TGG | + | chr4.2:4981289-4981308 | MS.gene91075:intron | 15.0% |
| !! | ATTGTATAGAATGAAAACTT+TGG | + | chr4.2:4981222-4981241 | MS.gene91075:intron | 20.0% |
| !! | CTAGTATATTCATGAAAAAT+TGG | + | chr4.2:4979423-4979442 | MS.gene91075:intron | 20.0% |
| !! | TGAAATATTGTACGTATTAA+GGG | + | chr4.2:4980544-4980563 | MS.gene91075:intron | 20.0% |
| !! | TGAACAGAATATAATTTGAT+GGG | - | chr4.2:4980898-4980917 | None:intergenic | 20.0% |
| !! | TTAAATATTAAGGAACTGTA+TGG | + | chr4.2:4979831-4979850 | MS.gene91075:intron | 20.0% |
| !! | TTGAAATATTGTACGTATTA+AGG | + | chr4.2:4980543-4980562 | MS.gene91075:intron | 20.0% |
| !! | TTGATATATTCTAATTTCTG+TGG | + | chr4.2:4978983-4979002 | MS.gene91075:intron | 20.0% |
| !!! | AGATTATATTTTGTTGACTT+TGG | + | chr4.2:4981197-4981216 | MS.gene91075:intron | 20.0% |
| !!! | ATGAAAACTTTGGTATTTTT+TGG | + | chr4.2:4981232-4981251 | MS.gene91075:intron | 20.0% |
| !!! | CATATTATTTTCAACTAGAA+AGG | + | chr4.2:4980388-4980407 | MS.gene91075:intron | 20.0% |
| !!! | CTGCCTTTTTTTTTTTTTTT+TGG | - | chr4.2:4980429-4980448 | None:intergenic | 20.0% |
| !!! | TTTTGTTTCTTCTGTTTTAT+GGG | + | chr4.2:4981436-4981455 | MS.gene91075:intron | 20.0% |
| !!! | TTTTTGTTTCTTCTGTTTTA+TGG | + | chr4.2:4981435-4981454 | MS.gene91075:intron | 20.0% |
| ! | AAAGAGAATGATTAGAGAAA+TGG | - | chr4.2:4978137-4978156 | None:intergenic | 25.0% |
| ! | AAATTATATTCTGTTCACCT+TGG | + | chr4.2:4980901-4980920 | MS.gene91075:intron | 25.0% |
| ! | AAGAAAATACACATTGAGTA+AGG | - | chr4.2:4980697-4980716 | None:intergenic | 25.0% |
| ! | AAGTAATTGGATGTAATCAA+AGG | - | chr4.2:4978751-4978770 | None:intergenic | 25.0% |
| ! | AATATAATTTGATGGGAAGT+GGG | - | chr4.2:4980891-4980910 | None:intergenic | 25.0% |
| ! | AATTGGTTGAAATTGAATTC+TGG | + | chr4.2:4978440-4978459 | MS.gene91075:intron | 25.0% |
| ! | AGAAGAAACAAAAAAGAATG+TGG | - | chr4.2:4981429-4981448 | None:intergenic | 25.0% |
| ! | CAAAAAACACAATGAAGATA+CGG | - | chr4.2:4978674-4978693 | None:intergenic | 25.0% |
| ! | CATGTAAAATATCTTCAACA+CGG | - | chr4.2:4979144-4979163 | None:intergenic | 25.0% |
| ! | CTACAAATGATAAAGATACT+TGG | - | chr4.2:4979268-4979287 | None:intergenic | 25.0% |
| ! | CTGATATCTAATATTAAAGC+AGG | - | chr4.2:4980153-4980172 | None:intergenic | 25.0% |
| ! | GTGAACAGAATATAATTTGA+TGG | - | chr4.2:4980899-4980918 | None:intergenic | 25.0% |
| ! | TAATTGAAGTTACAAGTATG+TGG | + | chr4.2:4979546-4979565 | MS.gene91075:intron | 25.0% |
| ! | TACATGTCAGATTAAACTTA+AGG | + | chr4.2:4978839-4978858 | MS.gene91075:intron | 25.0% |
| ! | TATAACATTGAGATTGTGAT+CGG | - | chr4.2:4978475-4978494 | None:intergenic | 25.0% |
| ! | TATTTCCAAAATATGATGTG+TGG | + | chr4.2:4978867-4978886 | MS.gene91075:intron | 25.0% |
| ! | TGATAATTATATACTGGCAT+AGG | + | chr4.2:4979492-4979511 | MS.gene91075:intron | 25.0% |
| !! | AATTGGTGAAAATGATCTTT+TGG | - | chr4.2:4980835-4980854 | None:intergenic | 25.0% |
| !! | AGATTCTTGTTTACACTTAT+CGG | + | chr4.2:4979286-4979305 | MS.gene91075:intron | 25.0% |
| !! | CATGCTAACTTCAATTATTT+TGG | - | chr4.2:4979524-4979543 | None:intergenic | 25.0% |
| !! | GTTGAAGATATTTTACATGT+GGG | + | chr4.2:4979145-4979164 | MS.gene91075:CDS | 25.0% |
| !! | GTTGTCTCATTTTATGTATT+TGG | + | chr4.2:4981281-4981300 | MS.gene91075:intron | 25.0% |
| !! | TATTGTTTCTTCTGTTATGT+GGG | + | chr4.2:4981126-4981145 | MS.gene91075:intron | 25.0% |
| !! | TGTTGAAGATATTTTACATG+TGG | + | chr4.2:4979144-4979163 | MS.gene91075:CDS | 25.0% |
| !! | TTACTCAATGTGTATTTTCT+TGG | + | chr4.2:4980696-4980715 | MS.gene91075:intron | 25.0% |
| !! | TTATTGTTTCTTCTGTTATG+TGG | + | chr4.2:4981125-4981144 | MS.gene91075:intron | 25.0% |
| !! | TTGATTAGTTACACATATTC+TGG | + | chr4.2:4979900-4979919 | MS.gene91075:intron | 25.0% |
| !! | TTTAGTTGGTTTATTAGTCT+TGG | + | chr4.2:4980996-4981015 | MS.gene91075:intron | 25.0% |
| !! | TTTGAAACAATCAATGAGAA+TGG | - | chr4.2:4979472-4979491 | None:intergenic | 25.0% |
| !! | TTTTCTTTCGAATTTCAACT+TGG | - | chr4.2:4978329-4978348 | None:intergenic | 25.0% |
| !!! | AGGAAAACTTTGGTATTTTT+TGG | + | chr4.2:4980933-4980952 | MS.gene91075:intron | 25.0% |
| !!! | GTTGTCTCATTTTATTTAGT+TGG | + | chr4.2:4980982-4981001 | MS.gene91075:intron | 25.0% |
| !!! | TTAGTTGGTTTATTAGTCTT+GGG | + | chr4.2:4980997-4981016 | MS.gene91075:intron | 25.0% |
| !!! | TTTTTTTTGTTTCTTCGTGT+AGG | + | chr4.2:4978227-4978246 | MS.gene91075:intron | 25.0% |
| AAAAAACTACCACATATGTG+TGG | + | chr4.2:4981038-4981057 | MS.gene91075:intron | 30.0% | |
| AAAATAAACTGGTTAGCATC+TGG | + | chr4.2:4981467-4981486 | MS.gene91075:intron | 30.0% | |
| AAATGTTAGAAGTTATCAGG+GGG | - | chr4.2:4980662-4980681 | None:intergenic | 30.0% | |
| AAGGTTATTAGTATGCAACA+AGG | + | chr4.2:4980596-4980615 | MS.gene91075:intron | 30.0% | |
| AAGTTGTATTAGTGTGTGTT+TGG | + | chr4.2:4979989-4980008 | MS.gene91075:intron | 30.0% | |
| AGCATAGCTGATTATATTTG+TGG | + | chr4.2:4980177-4980196 | MS.gene91075:intron | 30.0% | |
| AGTTGTATTAGTGTGTGTTT+GGG | + | chr4.2:4979990-4980009 | MS.gene91075:intron | 30.0% | |
| ATATAATTTGATGGGAAGTG+GGG | - | chr4.2:4980890-4980909 | None:intergenic | 30.0% | |
| ATCTATAGCCAAATCTTCAT+TGG | - | chr4.2:4981381-4981400 | None:intergenic | 30.0% | |
| ATGAAAAATTGGAGTGATCA+GGG | + | chr4.2:4979434-4979453 | MS.gene91075:intron | 30.0% | |
| ATTACTTTGACATTTGTCTG+TGG | + | chr4.2:4978417-4978436 | MS.gene91075:intron | 30.0% | |
| CAAATGTTAGAAGTTATCAG+GGG | - | chr4.2:4980663-4980682 | None:intergenic | 30.0% | |
| CAACTAATCACATGTTTAGA+TGG | - | chr4.2:4980126-4980145 | None:intergenic | 30.0% | |
| GAAGAAACAATAAAACGATG+TGG | - | chr4.2:4981118-4981137 | None:intergenic | 30.0% | |
| GAATATAATTTGATGGGAAG+TGG | - | chr4.2:4980892-4980911 | None:intergenic | 30.0% | |
| GCAAATGTTAGAAGTTATCA+GGG | - | chr4.2:4980664-4980683 | None:intergenic | 30.0% | |
| TCAATGAGAATGGTTCATTA+AGG | - | chr4.2:4979462-4979481 | None:intergenic | 30.0% | |
| TCTAAAAGATCTCATTGTTC+AGG | + | chr4.2:4979189-4979208 | MS.gene91075:CDS | 30.0% | |
| TGCAAATGTTAGAAGTTATC+AGG | - | chr4.2:4980665-4980684 | None:intergenic | 30.0% | |
| TGCAAGATCAAACGATAATT+AGG | - | chr4.2:4979240-4979259 | None:intergenic | 30.0% | |
| TGCACAAAAAAAATTACCTC+CGG | - | chr4.2:4980306-4980325 | None:intergenic | 30.0% | |
| ! | AAGTTCCACACATCATATTT+TGG | - | chr4.2:4978875-4978894 | None:intergenic | 30.0% |
| ! | GAACAATGAGATCTTTTAGA+AGG | - | chr4.2:4979189-4979208 | None:intergenic | 30.0% |
| !! | ATAACGGATTGATGAGAATA+TGG | - | chr4.2:4980865-4980884 | None:intergenic | 30.0% |
| !! | TAACGGATTGATGAGAATAT+GGG | - | chr4.2:4980864-4980883 | None:intergenic | 30.0% |
| !!! | AATTTTTGGCTTGAAAACCA+GGG | + | chr4.2:4980760-4980779 | MS.gene91075:intron | 30.0% |
| AAGTTACAAGTATGTGGACT+AGG | + | chr4.2:4979552-4979571 | MS.gene91075:intron | 35.0% | |
| AATGACCAGAAATCAAGCTT+TGG | - | chr4.2:4978588-4978607 | None:intergenic | 35.0% | |
| ACTGTATGGATCTGTTAATC+AGG | + | chr4.2:4979845-4979864 | MS.gene91075:intron | 35.0% | |
| AGAACATGAACTTTACCAGT+AGG | - | chr4.2:4979801-4979820 | None:intergenic | 35.0% | |
| AGATCAGACAAGAATATGAG+CGG | + | chr4.2:4978295-4978314 | MS.gene91075:CDS | 35.0% | |
| ATGGAAGACGTGTTATATGT+CGG | + | chr4.2:4978714-4978733 | MS.gene91075:intron | 35.0% | |
| ATTTGCCAAAGCTTGATTTC+TGG | + | chr4.2:4978580-4978599 | MS.gene91075:intron | 35.0% | |
| ATTTGTGGAAAATTCAGCTC+TGG | + | chr4.2:4980192-4980211 | MS.gene91075:intron | 35.0% | |
| CATGAAAAATTGGAGTGATC+AGG | + | chr4.2:4979433-4979452 | MS.gene91075:intron | 35.0% | |
| CTGTATGGATCTGTTAATCA+GGG | + | chr4.2:4979846-4979865 | MS.gene91075:intron | 35.0% | |
| GAACATGAACTTTACCAGTA+GGG | - | chr4.2:4979800-4979819 | None:intergenic | 35.0% | |
| GAGAATATGGGAGGAATAAT+TGG | - | chr4.2:4980852-4980871 | None:intergenic | 35.0% | |
| GAGCAGTATAGCAAATACAA+AGG | - | chr4.2:4980813-4980832 | None:intergenic | 35.0% | |
| GCATTGAAATTTGATCCTCT+CGG | + | chr4.2:4978180-4978199 | MS.gene91075:intron | 35.0% | |
| GTATTAAGGGTAAGATAGCT+GGG | + | chr4.2:4980557-4980576 | MS.gene91075:intron | 35.0% | |
| GTGAAAATACTCTTGATGCA+CGG | + | chr4.2:4980253-4980272 | MS.gene91075:CDS | 35.0% | |
| TAAATCACGACAGTACCATA+TGG | + | chr4.2:4980021-4980040 | MS.gene91075:intron | 35.0% | |
| TATTAAGGGTAAGATAGCTG+GGG | + | chr4.2:4980558-4980577 | MS.gene91075:intron | 35.0% | |
| TCCTGTTTACGAGAATATGT+GGG | + | chr4.2:4980960-4980979 | MS.gene91075:intron | 35.0% | |
| TGAAAAATTGGAGTGATCAG+GGG | + | chr4.2:4979435-4979454 | MS.gene91075:intron | 35.0% | |
| TGACAATCAAAGTTGGCAAT+AGG | + | chr4.2:4981091-4981110 | MS.gene91075:intron | 35.0% | |
| TGCTCAGTCAACTAAAAACA+TGG | - | chr4.2:4979960-4979979 | None:intergenic | 35.0% | |
| TGGATCATTATCGTGATGTT+CGG | + | chr4.2:4978614-4978633 | MS.gene91075:intron | 35.0% | |
| TTGACATTTGTCTGTGGAAT+TGG | + | chr4.2:4978423-4978442 | MS.gene91075:intron | 35.0% | |
| ! | CAAAGGATGATTTGGCAAAT+AGG | + | chr4.2:4981063-4981082 | MS.gene91075:intron | 35.0% |
| !! | GGGAAGTGTTGAAAATAAAC+TGG | + | chr4.2:4981456-4981475 | MS.gene91075:intron | 35.0% |
| !!! | GAATTTTTGGCTTGAAAACC+AGG | + | chr4.2:4980759-4980778 | MS.gene91075:intron | 35.0% |
| !!! | TTTTTTGGAGTGTCCTATGT+AGG | + | chr4.2:4981247-4981266 | MS.gene91075:intron | 35.0% |
| AATGAAAGAAGTTGCAGCCA+AGG | + | chr4.2:4979093-4979112 | MS.gene91075:CDS | 40.0% | |
| ACCCACATATTCTCGTAAAC+AGG | - | chr4.2:4980964-4980983 | None:intergenic | 40.0% | |
| ACTCACTGCCACAAACAATT+GGG | - | chr4.2:4979009-4979028 | None:intergenic | 40.0% | |
| AGTGTTCCGTAAAAAGCTTC+CGG | + | chr4.2:4980284-4980303 | MS.gene91075:CDS | 40.0% | |
| CAAGAAGCTGAAGAAAAAGC+CGG | + | chr4.2:4978080-4978099 | MS.gene91075:CDS | 40.0% | |
| CAATATCGAGAAGCTTCAGT+TGG | + | chr4.2:4978254-4978273 | MS.gene91075:CDS | 40.0% | |
| CACATGAGTGCAAACATATG+TGG | - | chr4.2:4981353-4981372 | None:intergenic | 40.0% | |
| CATATGTTTGCACTCATGTG+TGG | + | chr4.2:4981353-4981372 | MS.gene91075:intron | 40.0% | |
| CGTATTAAGGGTAAGATAGC+TGG | + | chr4.2:4980556-4980575 | MS.gene91075:intron | 40.0% | |
| GATATCTGGGAGGAAAACTT+TGG | + | chr4.2:4980923-4980942 | MS.gene91075:intron | 40.0% | |
| GCTCACATTCAAAAGTTCCT+TGG | - | chr4.2:4979113-4979132 | None:intergenic | 40.0% | |
| GGATGTAATCAAAGGCAAGT+TGG | - | chr4.2:4978743-4978762 | None:intergenic | 40.0% | |
| GGTCACATGACAATCAAAGT+TGG | + | chr4.2:4981084-4981103 | MS.gene91075:intron | 40.0% | |
| GTCCTGTTTACGAGAATATG+TGG | + | chr4.2:4980959-4980978 | MS.gene91075:intron | 40.0% | |
| TACTCACTGCCACAAACAAT+TGG | - | chr4.2:4979010-4979029 | None:intergenic | 40.0% | |
| TATCTTCAACACGGTGATGA+CGG | - | chr4.2:4979135-4979154 | None:intergenic | 40.0% | |
| TCCTATGTAGGAGAATACGA+GGG | + | chr4.2:4981259-4981278 | MS.gene91075:intron | 40.0% | |
| TCTGTTCACCTTGGATATCT+GGG | + | chr4.2:4980910-4980929 | MS.gene91075:intron | 40.0% | |
| TGGGTGATGTTGAAAATGAC+TGG | + | chr4.2:4981145-4981164 | MS.gene91075:intron | 40.0% | |
| TGTAGAACTGACACTTCTGA+TGG | + | chr4.2:4978695-4978714 | MS.gene91075:intron | 40.0% | |
| TGTAGAGTCGTTTGACCATA+TGG | - | chr4.2:4980039-4980058 | None:intergenic | 40.0% | |
| TTCTGTTCACCTTGGATATC+TGG | + | chr4.2:4980909-4980928 | MS.gene91075:intron | 40.0% | |
| TTGTGGTCAACAATGATCTC+TGG | - | chr4.2:4979734-4979753 | None:intergenic | 40.0% | |
| ! | AAAGGTGCAAACAGAGAGAA+GGG | - | chr4.2:4980795-4980814 | None:intergenic | 40.0% |
| ! | CTTCTGTCTTGTTGAGATGT+CGG | + | chr4.2:4979630-4979649 | MS.gene91075:CDS | 40.0% |
| ! | CTTTTTCTTCAGCTTCTTGG+CGG | - | chr4.2:4978079-4978098 | None:intergenic | 40.0% |
| ! | GAAAATGACTGGTTAGCATC+TGG | + | chr4.2:4981156-4981175 | MS.gene91075:intron | 40.0% |
| ! | TTACCTCCGGAAGCTTTTTA+CGG | - | chr4.2:4980293-4980312 | None:intergenic | 40.0% |
| ! | TTGTGTCACTATCACATGCA+AGG | - | chr4.2:4978542-4978561 | None:intergenic | 40.0% |
| !! | CAGGAGTATTCTGAAAAAGC+AGG | + | chr4.2:4979698-4979717 | MS.gene91075:CDS | 40.0% |
| !! | GATTTCTGGTCATTGTCTAG+TGG | + | chr4.2:4978594-4978613 | MS.gene91075:intron | 40.0% |
| !!! | GGTCTTCTGCTATTTTGTCT+TGG | + | chr4.2:4981310-4981329 | MS.gene91075:intron | 40.0% |
| AAATACTCTTGATGCACGGC+TGG | + | chr4.2:4980257-4980276 | MS.gene91075:CDS | 45.0% | |
| AAGGTGCAAACAGAGAGAAG+GGG | - | chr4.2:4980794-4980813 | None:intergenic | 45.0% | |
| ACCACATATGTGTGGCTCAA+AGG | + | chr4.2:4981046-4981065 | MS.gene91075:intron | 45.0% | |
| ACCCTCGTATTCTCCTACAT+AGG | - | chr4.2:4981263-4981282 | None:intergenic | 45.0% | |
| AGGAGAATTACATTGCCGAG+AGG | - | chr4.2:4978198-4978217 | None:intergenic | 45.0% | |
| CAATGCAGCTGAATGCTTCT+CGG | + | chr4.2:4979032-4979051 | MS.gene91075:CDS | 45.0% | |
| CAGGTGGAAGATAGACATTG+TGG | - | chr4.2:4979751-4979770 | None:intergenic | 45.0% | |
| CGACATCTCAACAAGACAGA+AGG | - | chr4.2:4979632-4979651 | None:intergenic | 45.0% | |
| CGGATTGATGAGAATATGGG+AGG | - | chr4.2:4980861-4980880 | None:intergenic | 45.0% | |
| CGTAAGAAAGCCTTCTCTGA+TGG | + | chr4.2:4980100-4980119 | MS.gene91075:intron | 45.0% | |
| CTCTAAGCAAATCCACCAGA+TGG | + | chr4.2:4978043-4978062 | MS.gene91075:CDS | 45.0% | |
| GGATAAATCTCACCATCTGG+TGG | - | chr4.2:4978058-4978077 | None:intergenic | 45.0% | |
| GTCCTATGTAGGAGAATACG+AGG | + | chr4.2:4981258-4981277 | MS.gene91075:intron | 45.0% | |
| GTGTGGCTCAAAGGATGATT+TGG | + | chr4.2:4981055-4981074 | MS.gene91075:intron | 45.0% | |
| GTGTGGCTCCAATGAAGATT+TGG | + | chr4.2:4981370-4981389 | MS.gene91075:intron | 45.0% | |
| GTTTAGATGGCCATCAGAGA+AGG | - | chr4.2:4980113-4980132 | None:intergenic | 45.0% | |
| TCCTTTGAGCCACACATATG+TGG | - | chr4.2:4981050-4981069 | None:intergenic | 45.0% | |
| TGGTCAACAATGATCTCTGG+TGG | - | chr4.2:4979731-4979750 | None:intergenic | 45.0% | |
| TTCTGTGGCCCAATTGTTTG+TGG | + | chr4.2:4978998-4979017 | MS.gene91075:intron | 45.0% | |
| ! | CAAAGGTGCAAACAGAGAGA+AGG | - | chr4.2:4980796-4980815 | None:intergenic | 45.0% |
| ! | CTTGTCCAAAGAGCTGCTTT+CGG | - | chr4.2:4981527-4981546 | None:intergenic | 45.0% |
| ! | GTGGAAAATTCAGCTCTGGT+GGG | + | chr4.2:4980196-4980215 | MS.gene91075:intron | 45.0% |
| ! | GTTTTCCTCCCAGATATCCA+AGG | - | chr4.2:4980921-4980940 | None:intergenic | 45.0% |
| ! | TCGTGAGTGTTGTGATGCTT+GGG | - | chr4.2:4979776-4979795 | None:intergenic | 45.0% |
| ! | TGGAAAATTCAGCTCTGGTG+GGG | + | chr4.2:4980197-4980216 | MS.gene91075:intron | 45.0% |
| ! | TGTGGAAAATTCAGCTCTGG+TGG | + | chr4.2:4980195-4980214 | MS.gene91075:intron | 45.0% |
| ! | TTCGTGAGTGTTGTGATGCT+TGG | - | chr4.2:4979777-4979796 | None:intergenic | 45.0% |
| !! | CGGCTTTTTCTTCAGCTTCT+TGG | - | chr4.2:4978082-4978101 | None:intergenic | 45.0% |
| AAGGGTAAGATAGCTGGGGA+GGG | + | chr4.2:4980562-4980581 | MS.gene91075:intron | 50.0% | |
| ACAACACTCACGAACCCTAC+TGG | + | chr4.2:4979783-4979802 | MS.gene91075:CDS | 50.0% | |
| CAGATCCGAAAGCAGCTCTT+TGG | + | chr4.2:4981519-4981538 | MS.gene91075:intron | 50.0% | |
| GAGAAGGGGAAAAATCTCCC+TGG | - | chr4.2:4980780-4980799 | None:intergenic | 50.0% | |
| GATCTCTCTCTCTGCTGAAG+AGG | + | chr4.2:4978106-4978125 | MS.gene91075:CDS | 50.0% | |
| GATGGGAAGTGGGGTGATAA+CGG | - | chr4.2:4980881-4980900 | None:intergenic | 50.0% | |
| GCACTTGGTAGAACATGTGC+TGG | + | chr4.2:4979664-4979683 | MS.gene91075:CDS | 50.0% | |
| GGCGGATAAATCTCACCATC+TGG | - | chr4.2:4978061-4978080 | None:intergenic | 50.0% | |
| GTTCACCTTGGATATCTGGG+AGG | + | chr4.2:4980913-4980932 | MS.gene91075:intron | 50.0% | |
| GTTCCGTAAAAAGCTTCCGG+AGG | + | chr4.2:4980287-4980306 | MS.gene91075:CDS | 50.0% | |
| TAAGGGTAAGATAGCTGGGG+AGG | + | chr4.2:4980561-4980580 | MS.gene91075:intron | 50.0% | |
| TCGGAAACATGACGTGCACT+TGG | + | chr4.2:4979649-4979668 | MS.gene91075:CDS | 50.0% | |
| ! | AAAATTCAGCTCTGGTGGGG+TGG | + | chr4.2:4980200-4980219 | MS.gene91075:intron | 50.0% |
| ! | AAGAGCTGCTTTCGGATCTG+TGG | - | chr4.2:4981519-4981538 | None:intergenic | 50.0% |
| !! | ATGAAGCACCGAGAGAGACA+CGG | - | chr4.2:4978820-4978839 | None:intergenic | 50.0% |
| AGCAGAGAGAGAGATCTCGC+CGG | - | chr4.2:4978102-4978121 | None:intergenic | 55.0% | |
| ATAGCTGGGGAGGGACTTCA+GGG | + | chr4.2:4980571-4980590 | MS.gene91075:intron | 55.0% | |
| CACCAGACACACGTTGACAC+CGG | - | chr4.2:4978796-4978815 | None:intergenic | 55.0% | |
| GTGTTGTGATGCTTGGGTGC+AGG | - | chr4.2:4979770-4979789 | None:intergenic | 55.0% | |
| TCTGGTGTCCGTGTCTCTCT+CGG | + | chr4.2:4978809-4978828 | MS.gene91075:intron | 55.0% | |
| TTGTGATGCTTGGGTGCAGG+TGG | - | chr4.2:4979767-4979786 | None:intergenic | 55.0% | |
| ! | ATCCGGTGTCAACGTGTGTC+TGG | + | chr4.2:4978791-4978810 | MS.gene91075:intron | 55.0% |
| !! | GTGGTGTTGGCTTCTCGTGA+TGG | + | chr4.2:4980219-4980238 | MS.gene91075:CDS | 55.0% |
| GATAGCTGGGGAGGGACTTC+AGG | + | chr4.2:4980570-4980589 | MS.gene91075:intron | 60.0% | |
| TGTGCTGGATGCAGCTGCAC+AGG | + | chr4.2:4979679-4979698 | MS.gene91075:CDS | 60.0% | |
| GGGGAGGGACTTCAGGGCTA+AGG | + | chr4.2:4980577-4980596 | MS.gene91075:intron | 65.0% | |
| ! | CAGCTCTGGTGGGGTGGTGT+TGG | + | chr4.2:4980206-4980225 | MS.gene91075:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 4978026 | 4981557 | 4978026 | ID=MS.gene91075 |
| chr4.2 | mRNA | 4978026 | 4981557 | 4978026 | ID=MS.gene91075.t1;Parent=MS.gene91075 |
| chr4.2 | exon | 4978026 | 4978127 | 4978026 | ID=MS.gene91075.t1.exon1;Parent=MS.gene91075.t1 |
| chr4.2 | CDS | 4978026 | 4978127 | 4978026 | ID=cds.MS.gene91075.t1;Parent=MS.gene91075.t1 |
| chr4.2 | exon | 4978249 | 4978349 | 4978249 | ID=MS.gene91075.t1.exon2;Parent=MS.gene91075.t1 |
| chr4.2 | CDS | 4978249 | 4978349 | 4978249 | ID=cds.MS.gene91075.t1;Parent=MS.gene91075.t1 |
| chr4.2 | exon | 4979024 | 4979210 | 4979024 | ID=MS.gene91075.t1.exon3;Parent=MS.gene91075.t1 |
| chr4.2 | CDS | 4979024 | 4979210 | 4979024 | ID=cds.MS.gene91075.t1;Parent=MS.gene91075.t1 |
| chr4.2 | exon | 4979608 | 4979804 | 4979608 | ID=MS.gene91075.t1.exon4;Parent=MS.gene91075.t1 |
| chr4.2 | CDS | 4979608 | 4979804 | 4979608 | ID=cds.MS.gene91075.t1;Parent=MS.gene91075.t1 |
| chr4.2 | exon | 4980209 | 4980308 | 4980209 | ID=MS.gene91075.t1.exon5;Parent=MS.gene91075.t1 |
| chr4.2 | CDS | 4980209 | 4980308 | 4980209 | ID=cds.MS.gene91075.t1;Parent=MS.gene91075.t1 |
| chr4.2 | exon | 4981522 | 4981557 | 4981522 | ID=MS.gene91075.t1.exon6;Parent=MS.gene91075.t1 |
| chr4.2 | CDS | 4981522 | 4981557 | 4981522 | ID=cds.MS.gene91075.t1;Parent=MS.gene91075.t1 |
| Gene Sequence |
| Protein sequence |
