Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22330.t1 | XP_003611036.1 | 97.8 | 230 | 5 | 0 | 1 | 230 | 1 | 230 | 1.90E-115 | 425.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22330.t1 | Q41396 | 80.3 | 229 | 44 | 1 | 1 | 229 | 1 | 228 | 2.3e-93 | 343.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22330.t1 | B7FMK2 | 97.8 | 230 | 5 | 0 | 1 | 230 | 1 | 230 | 1.4e-115 | 425.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene22330 | MS.gene87386 | PPI |
MS.gene22330 | MS.gene06042 | PPI |
MS.gene072752 | MS.gene22330 | PPI |
MS.gene22330 | MS.gene011917 | PPI |
MS.gene91075 | MS.gene22330 | PPI |
MS.gene22330 | MS.gene21642 | PPI |
MS.gene22330 | MS.gene003523 | PPI |
MS.gene22330 | MS.gene52076 | PPI |
MS.gene90980 | MS.gene22330 | PPI |
MS.gene28505 | MS.gene22330 | PPI |
MS.gene22330 | MS.gene057707 | PPI |
MS.gene44998 | MS.gene22330 | PPI |
MS.gene048900 | MS.gene22330 | PPI |
MS.gene024661 | MS.gene22330 | PPI |
MS.gene21642 | MS.gene22330 | PPI |
MS.gene55771 | MS.gene22330 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22330.t1 | MTR_5g009720 | 97.826 | 230 | 5 | 0 | 1 | 230 | 1 | 230 | 8.41e-164 | 451 |
MS.gene22330.t1 | MTR_8g099190 | 77.824 | 239 | 43 | 1 | 1 | 229 | 1 | 239 | 1.61e-132 | 373 |
MS.gene22330.t1 | MTR_8g099190 | 74.104 | 251 | 43 | 2 | 1 | 229 | 1 | 251 | 9.97e-129 | 363 |
MS.gene22330.t1 | MTR_8g099190 | 72.385 | 239 | 41 | 2 | 1 | 229 | 1 | 224 | 5.43e-118 | 335 |
MS.gene22330.t1 | MTR_4g073800 | 71.364 | 220 | 61 | 1 | 1 | 218 | 1 | 220 | 1.61e-110 | 318 |
MS.gene22330.t1 | MTR_8g099190 | 75.510 | 196 | 38 | 1 | 1 | 186 | 1 | 196 | 4.59e-103 | 297 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22330.t1 | AT4G11150 | 79.476 | 229 | 47 | 0 | 1 | 229 | 1 | 229 | 4.18e-132 | 371 |
MS.gene22330.t1 | AT1G64200 | 76.596 | 235 | 49 | 1 | 1 | 229 | 1 | 235 | 4.67e-128 | 361 |
MS.gene22330.t1 | AT1G64200 | 76.211 | 227 | 48 | 1 | 1 | 221 | 1 | 227 | 2.27e-122 | 347 |
MS.gene22330.t1 | AT3G08560 | 69.737 | 228 | 67 | 1 | 1 | 226 | 1 | 228 | 2.48e-108 | 311 |
MS.gene22330.t1 | AT1G64200 | 76.316 | 190 | 39 | 1 | 1 | 184 | 1 | 190 | 9.61e-99 | 285 |
Find 49 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGCTTTCTCTTCGGCTTCT+TGG | 0.240421 | 5.4:-4258195 | None:intergenic |
TCTAAAAGATCTCGTTATTC+AGG | 0.260442 | 5.4:+4259392 | MS.gene22330:CDS |
GCACTTGGTAGAGGAAGTTT+TGG | 0.315846 | 5.4:+4260185 | MS.gene22330:CDS |
CAGCTCTGGAGGTGTGGTAT+TGG | 0.325702 | 5.4:+4260603 | MS.gene22330:intron |
ATCATGGGGATTGTGATGGC+TGG | 0.343640 | 5.4:-4260295 | None:intergenic |
CAGATCCGCAAGCAGCTCTT+TGG | 0.350673 | 5.4:+4261820 | MS.gene22330:intron |
CTTTGCGCTCATACTCTTGA+CGG | 0.390529 | 5.4:-4258434 | None:intergenic |
AAATACACTTGATGCTCGTT+TGG | 0.406888 | 5.4:+4260654 | MS.gene22330:CDS |
TTTATTAACCACATCATCTT+GGG | 0.412688 | 5.4:-4259304 | None:intergenic |
CCTCTTTCCGACACCTCAAT+AGG | 0.416620 | 5.4:-4260158 | None:intergenic |
TCCTTATCAACAACGATCTC+TGG | 0.422603 | 5.4:-4260252 | None:intergenic |
GATCTCGTTGGCTTTCTCTT+CGG | 0.426517 | 5.4:-4258203 | None:intergenic |
CACCATCTGCTGGATTTGCT+TGG | 0.437939 | 5.4:-4258161 | None:intergenic |
GTTGAATGCTTCACGGTTGA+AGG | 0.443148 | 5.4:+4259272 | MS.gene22330:CDS |
ACCAGAGATCGTTGTTGATA+AGG | 0.446783 | 5.4:+4260251 | MS.gene22330:CDS |
TGCTCAGGAGTATGCTGAAA+AGG | 0.449579 | 5.4:+4260215 | MS.gene22330:CDS |
CTTTCTCTTCGGCTTCTTGG+CGG | 0.452151 | 5.4:-4258192 | None:intergenic |
GGATGAACCGCACCATCTGC+TGG | 0.455942 | 5.4:-4258171 | None:intergenic |
CTATGCAGTTGAATGCTTCA+CGG | 0.456350 | 5.4:+4259265 | MS.gene22330:CDS |
TCATGGGGATTGTGATGGCT+GGG | 0.459295 | 5.4:-4260294 | None:intergenic |
TTACATGTGGGAGTTTGTTA+CGG | 0.463593 | 5.4:-4260687 | None:intergenic |
CGAGAAGTTGCAGTTGGTTG+AGG | 0.469869 | 5.4:+4258395 | MS.gene22330:CDS |
AACATTACCAGTGGAGATCA+TGG | 0.476950 | 5.4:-4260311 | None:intergenic |
ATGGGGATTGTGATGGCTGG+GGG | 0.508306 | 5.4:-4260292 | None:intergenic |
CCTATTGAGGTGTCGGAAAG+AGG | 0.513705 | 5.4:+4260158 | MS.gene22330:CDS |
TTGTTATTCTTCAGCTCTGG+AGG | 0.520387 | 5.4:+4260592 | MS.gene22330:intron |
AGAGGACCTGCACTTGGTAG+AGG | 0.521773 | 5.4:+4260176 | MS.gene22330:CDS |
CAATATCGAGAAGTTGCAGT+TGG | 0.528790 | 5.4:+4258389 | MS.gene22330:CDS |
GCTCACATTCAAGAGTTCCT+TGG | 0.530777 | 5.4:-4259343 | None:intergenic |
CATGGGGATTGTGATGGCTG+GGG | 0.531144 | 5.4:-4260293 | None:intergenic |
CACATTCAAGAGTTCCTTGG+CGG | 0.533307 | 5.4:-4259340 | None:intergenic |
ATTCTTCAGCTCTGGAGGTG+TGG | 0.541669 | 5.4:+4260597 | MS.gene22330:intron |
ACATTACCAGTGGAGATCAT+GGG | 0.551646 | 5.4:-4260310 | None:intergenic |
CTTCTGTCCTATTGAGGTGT+CGG | 0.557410 | 5.4:+4260151 | MS.gene22330:CDS |
AAGAACCTTCTGTCCTATTG+AGG | 0.558216 | 5.4:+4260145 | MS.gene22330:CDS |
GTGGTATTGGCTTCTCATGA+TGG | 0.567055 | 5.4:+4260616 | MS.gene22330:CDS |
AAACTTCCTCTACCAAGTGC+AGG | 0.570638 | 5.4:-4260182 | None:intergenic |
AATGAAAGAGTCTGCCGCCA+AGG | 0.574070 | 5.4:+4259326 | MS.gene22330:CDS |
CGACACCTCAATAGGACAGA+AGG | 0.579267 | 5.4:-4260150 | None:intergenic |
ACAATCCCCATGATCTCCAC+TGG | 0.579484 | 5.4:+4260304 | MS.gene22330:CDS |
TCGGAAAGAGGACCTGCACT+TGG | 0.588677 | 5.4:+4260170 | MS.gene22330:CDS |
AGCGGAAACAGAGATCTCGT+TGG | 0.593299 | 5.4:-4258215 | None:intergenic |
CTCCAAGCAAATCCAGCAGA+TGG | 0.599092 | 5.4:+4258159 | MS.gene22330:CDS |
TCTTCAAGCCCAAGATGATG+TGG | 0.617482 | 5.4:+4259296 | MS.gene22330:CDS |
CATTACCAGTGGAGATCATG+GGG | 0.626749 | 5.4:-4260309 | None:intergenic |
AGCAAATCCAGCAGATGGTG+CGG | 0.627594 | 5.4:+4258164 | MS.gene22330:CDS |
GGAGATCATGGGGATTGTGA+TGG | 0.645556 | 5.4:-4260299 | None:intergenic |
GAAGTGATGTACTTCTTCAG+CGG | 0.656747 | 5.4:-4258233 | None:intergenic |
CTTGTCCAAAGAGCTGCTTG+CGG | 0.716823 | 5.4:-4261825 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAGATATAAATAATAAGAA+AGG | - | chr5.4:4259779-4259798 | None:intergenic | 10.0% |
!! | ATACTAAATTCAAATATATT+CGG | - | chr5.4:4258863-4258882 | None:intergenic | 10.0% |
!!! | TTATTTTCTCAAATTATTAT+CGG | - | chr5.4:4259611-4259630 | None:intergenic | 10.0% |
!!! | TTTTTAGTAAAAAAACTATT+TGG | + | chr5.4:4261677-4261696 | MS.gene22330:intron | 10.0% |
!! | AAAAAATTAACAAACAAAAG+AGG | - | chr5.4:4261286-4261305 | None:intergenic | 15.0% |
!! | AAAAATTAACAAACAAAAGA+GGG | - | chr5.4:4261285-4261304 | None:intergenic | 15.0% |
!! | AAAATATAATTGGAAAAATC+AGG | - | chr5.4:4259456-4259475 | None:intergenic | 15.0% |
!! | AAACAAATATCTAACATAAA+TGG | - | chr5.4:4260786-4260805 | None:intergenic | 15.0% |
!! | ATAACAAATAATACAATATC+AGG | - | chr5.4:4260579-4260598 | None:intergenic | 15.0% |
!! | TGAAAAATGAAATTAAGAAA+TGG | - | chr5.4:4258267-4258286 | None:intergenic | 15.0% |
!!! | AAATAACGTAAAATTTTGTT+AGG | - | chr5.4:4260013-4260032 | None:intergenic | 15.0% |
!!! | CATATAGTTTTAGATTTATT+TGG | + | chr5.4:4258627-4258646 | MS.gene22330:intron | 15.0% |
!!! | GTTGTGATATTATATTTTTT+AGG | + | chr5.4:4260476-4260495 | MS.gene22330:intron | 15.0% |
!!! | TTTCCAATTATATTTTCAAT+AGG | + | chr5.4:4259460-4259479 | MS.gene22330:intron | 15.0% |
!! | AAAGTACAAGTTATAATCAA+CGG | - | chr5.4:4261205-4261224 | None:intergenic | 20.0% |
!! | AATGAAATTAAGAAATGGAT+CGG | - | chr5.4:4258262-4258281 | None:intergenic | 20.0% |
!! | AATTGATCACAAAACTTATA+TGG | + | chr5.4:4258523-4258542 | MS.gene22330:intron | 20.0% |
!! | ATCCAACTATTATAATTGAA+TGG | - | chr5.4:4258691-4258710 | None:intergenic | 20.0% |
!! | ATTAAAACAATCCATTATAC+CGG | + | chr5.4:4260368-4260387 | MS.gene22330:intron | 20.0% |
!! | CTTTCAATATTTGCAATATA+AGG | + | chr5.4:4261166-4261185 | MS.gene22330:intron | 20.0% |
!! | GAAACTTGGAATTAAATATA+AGG | + | chr5.4:4260092-4260111 | MS.gene22330:intron | 20.0% |
!! | GACTATTTATTTACATAATC+TGG | + | chr5.4:4261309-4261328 | MS.gene22330:intron | 20.0% |
!! | GATCCTATTGAAAATATAAT+TGG | - | chr5.4:4259466-4259485 | None:intergenic | 20.0% |
!! | GCATATTCTTATAAAATTCT+AGG | - | chr5.4:4259488-4259507 | None:intergenic | 20.0% |
!! | TACTAAAAATCACATTTGAA+GGG | - | chr5.4:4261666-4261685 | None:intergenic | 20.0% |
!! | TATAACAAAAACTTACATGT+GGG | - | chr5.4:4260702-4260721 | None:intergenic | 20.0% |
!! | TCAATTATAATAGTTGGATT+TGG | + | chr5.4:4258692-4258711 | MS.gene22330:intron | 20.0% |
!! | TTAATCAAGAACAGTTATTT+AGG | - | chr5.4:4260353-4260372 | None:intergenic | 20.0% |
!! | TTACTAAAAATCACATTTGA+AGG | - | chr5.4:4261667-4261686 | None:intergenic | 20.0% |
!! | TTATAACAAAAACTTACATG+TGG | - | chr5.4:4260703-4260722 | None:intergenic | 20.0% |
!!! | AAAATTTTGTTAGGTTTCTT+TGG | - | chr5.4:4260004-4260023 | None:intergenic | 20.0% |
!!! | AAATTTTGTTAGGTTTCTTT+GGG | - | chr5.4:4260003-4260022 | None:intergenic | 20.0% |
!!! | CTACTTGGAATATAATTTTA+GGG | + | chr5.4:4259934-4259953 | MS.gene22330:intron | 20.0% |
!!! | GGTCAGTTAAAATTTTAATA+TGG | + | chr5.4:4259413-4259432 | MS.gene22330:intron | 20.0% |
!!! | TAAAACGTAGTTTTTATACT+AGG | + | chr5.4:4261751-4261770 | MS.gene22330:intron | 20.0% |
!!! | TATCGTTGATTAATAGAATT+TGG | + | chr5.4:4259055-4259074 | MS.gene22330:intron | 20.0% |
!!! | TCTACTTGGAATATAATTTT+AGG | + | chr5.4:4259933-4259952 | MS.gene22330:intron | 20.0% |
!!! | TCTTTTTCTAACTTGAAAAA+TGG | + | chr5.4:4259190-4259209 | MS.gene22330:intron | 20.0% |
!!! | TTAACTTTTTTTTTTCCCTT+GGG | + | chr5.4:4261110-4261129 | MS.gene22330:intron | 20.0% |
!!! | TTGTTATTTACATATGTGAA+TGG | + | chr5.4:4258547-4258566 | MS.gene22330:intron | 20.0% |
! | AAACACACTATATAAATACC+GGG | - | chr5.4:4261606-4261625 | None:intergenic | 25.0% |
! | AATAATAAGAAAGGATGAGA+AGG | - | chr5.4:4259770-4259789 | None:intergenic | 25.0% |
! | ACGATCTATTAAACAAAACA+TGG | - | chr5.4:4258331-4258350 | None:intergenic | 25.0% |
! | ATAAATTAGTTGCATTGTAC+AGG | - | chr5.4:4261527-4261546 | None:intergenic | 25.0% |
! | ATTTAATCAGTCATCATACT+TGG | - | chr5.4:4259087-4259106 | None:intergenic | 25.0% |
! | CAAACACACTATATAAATAC+CGG | - | chr5.4:4261607-4261626 | None:intergenic | 25.0% |
! | GGTATTTATATAGTGTGTTT+GGG | + | chr5.4:4261606-4261625 | MS.gene22330:intron | 25.0% |
! | TAAATTAGTTGCATTGTACA+GGG | - | chr5.4:4261526-4261545 | None:intergenic | 25.0% |
! | TAATATTGAGAAATGAAGTG+CGG | - | chr5.4:4261142-4261161 | None:intergenic | 25.0% |
! | TCAATTGTATAAGATCATCA+AGG | + | chr5.4:4258600-4258619 | MS.gene22330:intron | 25.0% |
! | TGCCATTCAATTATAATAGT+TGG | + | chr5.4:4258686-4258705 | MS.gene22330:intron | 25.0% |
! | TTTAAATGTAACATTACCAG+TGG | - | chr5.4:4260323-4260342 | None:intergenic | 25.0% |
! | TTTAGTGTAATCATATGTGT+TGG | + | chr5.4:4259636-4259655 | MS.gene22330:intron | 25.0% |
! | TTTATTAACCACATCATCTT+GGG | - | chr5.4:4259307-4259326 | None:intergenic | 25.0% |
!! | AATTTTGTTAGGTTTCTTTG+GGG | - | chr5.4:4260002-4260021 | None:intergenic | 25.0% |
!! | ATAGTTAGTTAACAGAGTTT+TGG | - | chr5.4:4261042-4261061 | None:intergenic | 25.0% |
!! | ATGTTTAAGATTTGAAACTC+AGG | - | chr5.4:4260516-4260535 | None:intergenic | 25.0% |
!! | TGTTTAAGATTTGAAACTCA+GGG | - | chr5.4:4260515-4260534 | None:intergenic | 25.0% |
!! | TTTTATTAACCACATCATCT+TGG | - | chr5.4:4259308-4259327 | None:intergenic | 25.0% |
!! | TTTTCTAACTTGAAAAATGG+TGG | + | chr5.4:4259193-4259212 | MS.gene22330:intron | 25.0% |
!!! | ACTGTTTCTATAGTTGATTA+AGG | + | chr5.4:4260547-4260566 | MS.gene22330:intron | 25.0% |
!!! | ATTAAGGTTTTGTGTTGAAT+AGG | + | chr5.4:4260994-4261013 | MS.gene22330:intron | 25.0% |
!!! | CTTAACTTTTTTTTTTCCCT+TGG | + | chr5.4:4261109-4261128 | MS.gene22330:intron | 25.0% |
!!! | GCATAGTGTTTTTTTTGTTT+GGG | + | chr5.4:4260750-4260769 | MS.gene22330:intron | 25.0% |
!!! | TGCATAGTGTTTTTTTTGTT+TGG | + | chr5.4:4260749-4260768 | MS.gene22330:intron | 25.0% |
!!! | TTAAGGTTTTGTGTTGAATA+GGG | + | chr5.4:4260995-4261014 | MS.gene22330:intron | 25.0% |
AAAAGTTAAGAATGAAACGC+AGG | - | chr5.4:4261099-4261118 | None:intergenic | 30.0% | |
AAAATCAGGTAAACAACTAC+AGG | - | chr5.4:4259442-4259461 | None:intergenic | 30.0% | |
AATATTGAGAAATGAAGTGC+GGG | - | chr5.4:4261141-4261160 | None:intergenic | 30.0% | |
AATGAAATACTTGAGAGTTG+AGG | + | chr5.4:4260892-4260911 | MS.gene22330:intron | 30.0% | |
AGGAAAAGACATGGATTTAT+GGG | + | chr5.4:4261496-4261515 | MS.gene22330:intron | 30.0% | |
AGGAATTAGGAACTGTATAA+AGG | + | chr5.4:4260953-4260972 | MS.gene22330:intron | 30.0% | |
ATCAATTTCTGCATATGTGA+TGG | + | chr5.4:4261437-4261456 | MS.gene22330:intron | 30.0% | |
CGGTATTTATATAGTGTGTT+TGG | + | chr5.4:4261605-4261624 | MS.gene22330:intron | 30.0% | |
CTTACACAAATACTAAAACC+CGG | + | chr5.4:4261585-4261604 | MS.gene22330:intron | 30.0% | |
GAATTAGGAACTGTATAAAG+GGG | + | chr5.4:4260955-4260974 | MS.gene22330:intron | 30.0% | |
GATCCAACTATTGTAATTGA+AGG | - | chr5.4:4258839-4258858 | None:intergenic | 30.0% | |
GCAATCTATTCTGTAATTGA+AGG | - | chr5.4:4259522-4259541 | None:intergenic | 30.0% | |
GGAATTAGGAACTGTATAAA+GGG | + | chr5.4:4260954-4260973 | MS.gene22330:intron | 30.0% | |
TAGGAAAAGACATGGATTTA+TGG | + | chr5.4:4261495-4261514 | MS.gene22330:intron | 30.0% | |
TATGACTTCTAATCAAACCA+AGG | - | chr5.4:4261733-4261752 | None:intergenic | 30.0% | |
TATTCCAAGTAGACTTAAGA+AGG | - | chr5.4:4259926-4259945 | None:intergenic | 30.0% | |
TCAATTACAGAATAGATTGC+AGG | + | chr5.4:4259522-4259541 | MS.gene22330:intron | 30.0% | |
TCTAAAAGATCTCGTTATTC+AGG | + | chr5.4:4259392-4259411 | MS.gene22330:CDS | 30.0% | |
TGTCCTTCAATTACAATAGT+TGG | + | chr5.4:4258833-4258852 | MS.gene22330:intron | 30.0% | |
TTAACAAACAAAAGAGGGAA+AGG | - | chr5.4:4261280-4261299 | None:intergenic | 30.0% | |
TTACTTTGTGTATGGAAACT+TGG | + | chr5.4:4260078-4260097 | MS.gene22330:intron | 30.0% | |
TTTGTGTTGAATAGGGTAAA+GGG | + | chr5.4:4261002-4261021 | MS.gene22330:intron | 30.0% | |
! | ATAAATTTTCCTCCAAACCT+TGG | + | chr5.4:4261713-4261732 | MS.gene22330:intron | 30.0% |
! | ATTTTGTTAGGTTTCTTTGG+GGG | - | chr5.4:4260001-4260020 | None:intergenic | 30.0% |
! | GAATAACGAGATCTTTTAGA+AGG | - | chr5.4:4259392-4259411 | None:intergenic | 30.0% |
! | GATCTTTTCTCATAGATCAT+TGG | + | chr5.4:4258998-4259017 | MS.gene22330:intron | 30.0% |
! | TACAATTGGTAGCAATTGAT+TGG | + | chr5.4:4258913-4258932 | MS.gene22330:intron | 30.0% |
! | TCTAGATGATTTTTGATCGT+CGG | + | chr5.4:4261395-4261414 | MS.gene22330:intron | 30.0% |
! | TTTTGTACACATGATGATCA+CGG | - | chr5.4:4259368-4259387 | None:intergenic | 30.0% |
! | TTTTGTGTTGAATAGGGTAA+AGG | + | chr5.4:4261001-4261020 | MS.gene22330:intron | 30.0% |
!! | TATTTGTTATTCTTCAGCTC+TGG | + | chr5.4:4260589-4260608 | MS.gene22330:intron | 30.0% |
!!! | GTATTTTACAGAGTTTGTTG+AGG | + | chr5.4:4260118-4260137 | MS.gene22330:intron | 30.0% |
AAATACACTTGATGCTCGTT+TGG | + | chr5.4:4260654-4260673 | MS.gene22330:CDS | 35.0% | |
ACTGATGTGTCTAATGTCAT+GGG | + | chr5.4:4259850-4259869 | MS.gene22330:intron | 35.0% | |
ATCCATTATACCGGATTTCT+AGG | + | chr5.4:4260377-4260396 | MS.gene22330:intron | 35.0% | |
CAACGATATGTGATTAGTAC+TGG | - | chr5.4:4259043-4259062 | None:intergenic | 35.0% | |
CATCCAAAACGAGTTTACTT+TGG | - | chr5.4:4258786-4258805 | None:intergenic | 35.0% | |
CTTCTAATCAAACCAAGGTT+TGG | - | chr5.4:4261728-4261747 | None:intergenic | 35.0% | |
GGAAAAGACATGGATTTATG+GGG | + | chr5.4:4261497-4261516 | MS.gene22330:intron | 35.0% | |
TACCTAGAAATCCGGTATAA+TGG | - | chr5.4:4260382-4260401 | None:intergenic | 35.0% | |
TGAGAGTTTAGGAAAAGACA+TGG | + | chr5.4:4261487-4261506 | MS.gene22330:intron | 35.0% | |
! | ATTATACCGGATTTCTAGGT+AGG | + | chr5.4:4260381-4260400 | MS.gene22330:intron | 35.0% |
! | CATCCAAAGTAAACTCGTTT+TGG | + | chr5.4:4258780-4258799 | MS.gene22330:intron | 35.0% |
! | CATGCACTTCGAATATTTTC+AGG | - | chr5.4:4261561-4261580 | None:intergenic | 35.0% |
! | TTATACCGGATTTCTAGGTA+GGG | + | chr5.4:4260382-4260401 | MS.gene22330:intron | 35.0% |
!! | GAATTACGCTGTTTTGTTGT+AGG | + | chr5.4:4258362-4258381 | MS.gene22330:intron | 35.0% |
!! | TGTGCTACTTACTTTGTGTA+TGG | + | chr5.4:4260070-4260089 | MS.gene22330:intron | 35.0% |
!! | TTACATGTGGGAGTTTGTTA+CGG | - | chr5.4:4260690-4260709 | None:intergenic | 35.0% |
AACATTACCAGTGGAGATCA+TGG | - | chr5.4:4260314-4260333 | None:intergenic | 40.0% | |
AACTGTATAAAGGGGCAGAA+CGG | + | chr5.4:4260963-4260982 | MS.gene22330:intron | 40.0% | |
AAGAACCTTCTGTCCTATTG+AGG | + | chr5.4:4260145-4260164 | MS.gene22330:CDS | 40.0% | |
AAGGCCTTCTTAAGTCTACT+TGG | + | chr5.4:4259919-4259938 | MS.gene22330:intron | 40.0% | |
ACAAAAGAGGGAAAGGAAGT+TGG | - | chr5.4:4261273-4261292 | None:intergenic | 40.0% | |
ACATTACCAGTGGAGATCAT+GGG | - | chr5.4:4260313-4260332 | None:intergenic | 40.0% | |
ACCAGAGATCGTTGTTGATA+AGG | + | chr5.4:4260251-4260270 | MS.gene22330:CDS | 40.0% | |
AGGTCAATTATGCACTGTGA+GGG | + | chr5.4:4260912-4260931 | MS.gene22330:intron | 40.0% | |
CAAAAGAGGGAAAGGAAGTT+GGG | - | chr5.4:4261272-4261291 | None:intergenic | 40.0% | |
CAATATCGAGAAGTTGCAGT+TGG | + | chr5.4:4258389-4258408 | MS.gene22330:CDS | 40.0% | |
CAATTCCCTACCTAGAAATC+CGG | - | chr5.4:4260390-4260409 | None:intergenic | 40.0% | |
CACAGTCTCACAGATACAAT+TGG | + | chr5.4:4258899-4258918 | MS.gene22330:intron | 40.0% | |
CACTGATGTGTCTAATGTCA+TGG | + | chr5.4:4259849-4259868 | MS.gene22330:intron | 40.0% | |
CATGACATTAGACACATCAG+TGG | - | chr5.4:4259851-4259870 | None:intergenic | 40.0% | |
CCTTGTTGACCAGTAAAAAG+GGG | - | chr5.4:4259903-4259922 | None:intergenic | 40.0% | |
CTAATCAAACCAAGGTTTGG+AGG | - | chr5.4:4261725-4261744 | None:intergenic | 40.0% | |
CTATGCAGTTGAATGCTTCA+CGG | + | chr5.4:4259265-4259284 | MS.gene22330:CDS | 40.0% | |
GAAGTGATGTACTTCTTCAG+CGG | - | chr5.4:4258236-4258255 | None:intergenic | 40.0% | |
GCTTCTTGAAGCAATACCAT+TGG | - | chr5.4:4259824-4259843 | None:intergenic | 40.0% | |
GGCTGTGGTATTTAGGTATA+GGG | + | chr5.4:4259557-4259576 | MS.gene22330:intron | 40.0% | |
TCCTTATCAACAACGATCTC+TGG | - | chr5.4:4260255-4260274 | None:intergenic | 40.0% | |
TTGGGCATGTAACAGGAATT+AGG | + | chr5.4:4260940-4260959 | MS.gene22330:intron | 40.0% | |
! | ACTGTCTTGTCGTTTGAGAA+AGG | - | chr5.4:4259745-4259764 | None:intergenic | 40.0% |
! | AGATTGCAGGACTTTGAGAA+AGG | + | chr5.4:4259535-4259554 | MS.gene22330:intron | 40.0% |
! | CAGAACGGACTTAAGGATTA+AGG | + | chr5.4:4260978-4260997 | MS.gene22330:intron | 40.0% |
! | CGATATGTGATTAGTACTGG+CGG | - | chr5.4:4259040-4259059 | None:intergenic | 40.0% |
! | CTGTCTTGTCGTTTGAGAAA+GGG | - | chr5.4:4259744-4259763 | None:intergenic | 40.0% |
! | GATTGCAGGACTTTGAGAAA+GGG | + | chr5.4:4259536-4259555 | MS.gene22330:intron | 40.0% |
! | GCCTTGTTGACCAGTAAAAA+GGG | - | chr5.4:4259904-4259923 | None:intergenic | 40.0% |
! | TGTGTTTGGGTTCACAATAG+AGG | + | chr5.4:4261619-4261638 | MS.gene22330:intron | 40.0% |
! | TTGTTATTCTTCAGCTCTGG+AGG | + | chr5.4:4260592-4260611 | MS.gene22330:intron | 40.0% |
!! | GATATGTGATTAGTACTGGC+GGG | - | chr5.4:4259039-4259058 | None:intergenic | 40.0% |
!! | TGTCTAGCTCTGTTAGTCAA+GGG | + | chr5.4:4260419-4260438 | MS.gene22330:intron | 40.0% |
AAACTTCCTCTACCAAGTGC+AGG | - | chr5.4:4260185-4260204 | None:intergenic | 45.0% | |
ACCATTGGTGTGTCAGTTAG+TGG | - | chr5.4:4259809-4259828 | None:intergenic | 45.0% | |
AGGTATAGGGCTATGAAGCA+CGG | + | chr5.4:4259570-4259589 | MS.gene22330:intron | 45.0% | |
ATGCATTGTGCAAGTGGTTC+GGG | + | chr5.4:4261460-4261479 | MS.gene22330:intron | 45.0% | |
CACATTCAAGAGTTCCTTGG+CGG | - | chr5.4:4259343-4259362 | None:intergenic | 45.0% | |
CATTACCAGTGGAGATCATG+GGG | - | chr5.4:4260312-4260331 | None:intergenic | 45.0% | |
CTTCTGTCCTATTGAGGTGT+CGG | + | chr5.4:4260151-4260170 | MS.gene22330:CDS | 45.0% | |
CTTTGCGCTCATACTCTTGA+CGG | - | chr5.4:4258437-4258456 | None:intergenic | 45.0% | |
GAAGTTGGGCAGTAATGCTA+AGG | - | chr5.4:4261258-4261277 | None:intergenic | 45.0% | |
GAGAAAGGGCTGTGGTATTT+AGG | + | chr5.4:4259550-4259569 | MS.gene22330:intron | 45.0% | |
GAGGTCAATTATGCACTGTG+AGG | + | chr5.4:4260911-4260930 | MS.gene22330:intron | 45.0% | |
GATGCATTGTGCAAGTGGTT+CGG | + | chr5.4:4261459-4261478 | MS.gene22330:intron | 45.0% | |
GCTAGAAGCAATCTGAGCAA+TGG | - | chr5.4:4261068-4261087 | None:intergenic | 45.0% | |
GCTCACATTCAAGAGTTCCT+TGG | - | chr5.4:4259346-4259365 | None:intergenic | 45.0% | |
GGAAGAGAAGCAGGATGATA+GGG | - | chr5.4:4259882-4259901 | None:intergenic | 45.0% | |
GGGCTGTGGTATTTAGGTAT+AGG | + | chr5.4:4259556-4259575 | MS.gene22330:intron | 45.0% | |
GTAAAAAGGGGAAGAGAAGC+AGG | - | chr5.4:4259891-4259910 | None:intergenic | 45.0% | |
GTTGAATGCTTCACGGTTGA+AGG | + | chr5.4:4259272-4259291 | MS.gene22330:CDS | 45.0% | |
TCCACTAACTGACACACCAA+TGG | + | chr5.4:4259805-4259824 | MS.gene22330:intron | 45.0% | |
TCTCTCGGGTCTAACTTGAT+TGG | + | chr5.4:4260454-4260473 | MS.gene22330:intron | 45.0% | |
TCTTCAAGCCCAAGATGATG+TGG | + | chr5.4:4259296-4259315 | MS.gene22330:CDS | 45.0% | |
TGAGAAAGGGCTGTGGTATA+GGG | - | chr5.4:4259731-4259750 | None:intergenic | 45.0% | |
TGGTATAGGGCTATGAAGCA+CGG | - | chr5.4:4259718-4259737 | None:intergenic | 45.0% | |
TTGAGAAAGGGCTGTGGTAT+AGG | - | chr5.4:4259567-4259548 | None:intergenic | 45.0% | |
TTGGGCAGTAATGCTAAGGT+GGG | - | chr5.4:4261254-4261273 | None:intergenic | 45.0% | |
! | CCCCTTTTTACTGGTCAACA+AGG | + | chr5.4:4259900-4259919 | MS.gene22330:intron | 45.0% |
! | GCACTTGGTAGAGGAAGTTT+TGG | + | chr5.4:4260185-4260204 | MS.gene22330:CDS | 45.0% |
! | GCTTCTCTTCCCCTTTTTAC+TGG | + | chr5.4:4259891-4259910 | MS.gene22330:intron | 45.0% |
! | GTTAGGTTTCTTTGGGGGAA+GGG | - | chr5.4:4259996-4260015 | None:intergenic | 45.0% |
! | TGATGGATGCATTGTGCAAG+TGG | + | chr5.4:4261454-4261473 | MS.gene22330:intron | 45.0% |
! | TGCTCAGGAGTATGCTGAAA+AGG | + | chr5.4:4260215-4260234 | MS.gene22330:CDS | 45.0% |
! | TGTTAGGTTTCTTTGGGGGA+AGG | - | chr5.4:4259997-4260016 | None:intergenic | 45.0% |
! | TTAGGTTTCTTTGGGGGAAG+GGG | - | chr5.4:4259995-4260014 | None:intergenic | 45.0% |
!! | AGGTGGGGGAGTATCTATTT+AGG | - | chr5.4:4261238-4261257 | None:intergenic | 45.0% |
!! | CGACAGATGACGCTCTAAAA+AGG | - | chr5.4:4261337-4261356 | None:intergenic | 45.0% |
!! | GATCTCGTTGGCTTTCTCTT+CGG | - | chr5.4:4258206-4258225 | None:intergenic | 45.0% |
!! | GGCCTTGTTGACCAGTAAAA+AGG | - | chr5.4:4259905-4259924 | None:intergenic | 45.0% |
!! | GGGGGAGTATCTATTTAGGA+AGG | - | chr5.4:4261234-4261253 | None:intergenic | 45.0% |
!! | GTGGTATTGGCTTCTCATGA+TGG | + | chr5.4:4260616-4260635 | MS.gene22330:CDS | 45.0% |
!! | GTGTCTAGCTCTGTTAGTCA+AGG | + | chr5.4:4260418-4260437 | MS.gene22330:intron | 45.0% |
!!! | AGTTTTGGATTCAGCTGCTC+AGG | + | chr5.4:4260200-4260219 | MS.gene22330:CDS | 45.0% |
!!! | TTTTAGAGCGTCATCTGTCG+CGG | + | chr5.4:4261337-4261356 | MS.gene22330:intron | 45.0% |
!! | AAAAAAAAAAAATATGTAAA+AGG | - | chr5.4:4258494-4258513 | None:intergenic | 5.0% |
AATGAAAGAGTCTGCCGCCA+AGG | + | chr5.4:4259326-4259345 | MS.gene22330:CDS | 50.0% | |
ACAATCCCCATGATCTCCAC+TGG | + | chr5.4:4260304-4260323 | MS.gene22330:CDS | 50.0% | |
AGCAAATCCAGCAGATGGTG+CGG | + | chr5.4:4258164-4258183 | MS.gene22330:CDS | 50.0% | |
AGCGGAAACAGAGATCTCGT+TGG | - | chr5.4:4258218-4258237 | None:intergenic | 50.0% | |
ATCATGGGGATTGTGATGGC+TGG | - | chr5.4:4260298-4260317 | None:intergenic | 50.0% | |
ATGAAGCACGGGCAAAGACA+CGG | + | chr5.4:4259582-4259601 | MS.gene22330:intron | 50.0% | |
ATGCACTGTGAGGGACAACT+TGG | + | chr5.4:4260921-4260940 | MS.gene22330:intron | 50.0% | |
CCTCTTTCCGACACCTCAAT+AGG | - | chr5.4:4260161-4260180 | None:intergenic | 50.0% | |
CGACACCTCAATAGGACAGA+AGG | - | chr5.4:4260153-4260172 | None:intergenic | 50.0% | |
CGAGAAGTTGCAGTTGGTTG+AGG | + | chr5.4:4258395-4258414 | MS.gene22330:CDS | 50.0% | |
CTCCAAGCAAATCCAGCAGA+TGG | + | chr5.4:4258159-4258178 | MS.gene22330:CDS | 50.0% | |
CTTGTCCAAAGAGCTGCTTG+CGG | - | chr5.4:4261828-4261847 | None:intergenic | 50.0% | |
CTTTCTCTTCGGCTTCTTGG+CGG | - | chr5.4:4258195-4258214 | None:intergenic | 50.0% | |
GCTCAGATTGCTTCTAGCAC+TGG | + | chr5.4:4261070-4261089 | MS.gene22330:intron | 50.0% | |
GGACAACTTGGGCATGTAAC+AGG | + | chr5.4:4260933-4260952 | MS.gene22330:intron | 50.0% | |
GGAGATCATGGGGATTGTGA+TGG | - | chr5.4:4260302-4260321 | None:intergenic | 50.0% | |
GGGAAGAGAAGCAGGATGAT+AGG | - | chr5.4:4259883-4259902 | None:intergenic | 50.0% | |
GGTATAGGGCTATGAAGCAC+GGG | + | chr5.4:4259571-4259590 | MS.gene22330:intron | 50.0% | |
GTTGGGCAGTAATGCTAAGG+TGG | - | chr5.4:4261255-4261274 | None:intergenic | 50.0% | |
TATGAAGCACGGACACTCCT+CGG | - | chr5.4:4259707-4259726 | None:intergenic | 50.0% | |
TCATGGGGATTGTGATGGCT+GGG | - | chr5.4:4260297-4260316 | None:intergenic | 50.0% | |
TGCACTGTGAGGGACAACTT+GGG | + | chr5.4:4260922-4260941 | MS.gene22330:intron | 50.0% | |
TGGCTTTCTCTTCGGCTTCT+TGG | - | chr5.4:4258198-4258217 | None:intergenic | 50.0% | |
TGGGCAGTAATGCTAAGGTG+GGG | - | chr5.4:4261253-4261272 | None:intergenic | 50.0% | |
! | AAAGGGGCAGAACGGACTTA+AGG | + | chr5.4:4260971-4260990 | MS.gene22330:intron | 50.0% |
! | AGGACTTTGAGAAAGGGCTG+TGG | + | chr5.4:4259542-4259561 | MS.gene22330:intron | 50.0% |
! | ATTGTGCAAGTGGTTCGGGT+GGG | + | chr5.4:4261464-4261483 | MS.gene22330:intron | 50.0% |
! | CACCATCTGCTGGATTTGCT+TGG | - | chr5.4:4258164-4258183 | None:intergenic | 50.0% |
! | TAGGTTTCTTTGGGGGAAGG+GGG | - | chr5.4:4259994-4260013 | None:intergenic | 50.0% |
! | TGTCGTTTGAGAAAGGGCTG+TGG | - | chr5.4:4259738-4259757 | None:intergenic | 50.0% |
!! | ATTCTTCAGCTCTGGAGGTG+TGG | + | chr5.4:4260597-4260616 | MS.gene22330:intron | 50.0% |
!! | CCTATTGAGGTGTCGGAAAG+AGG | + | chr5.4:4260158-4260177 | MS.gene22330:CDS | 50.0% |
!! | GGCTTGCATCTAGTTCTCTC+GGG | + | chr5.4:4260440-4260459 | MS.gene22330:intron | 50.0% |
!! | GGGCTTGCATCTAGTTCTCT+CGG | + | chr5.4:4260439-4260458 | MS.gene22330:intron | 50.0% |
AGAGGACCTGCACTTGGTAG+AGG | + | chr5.4:4260176-4260195 | MS.gene22330:CDS | 55.0% | |
ATGGGGATTGTGATGGCTGG+GGG | - | chr5.4:4260295-4260314 | None:intergenic | 55.0% | |
CAGATCCGCAAGCAGCTCTT+TGG | + | chr5.4:4261820-4261839 | MS.gene22330:intron | 55.0% | |
CATGGGGATTGTGATGGCTG+GGG | - | chr5.4:4260296-4260315 | None:intergenic | 55.0% | |
GAAGTGCGGGTACTACCCAA+GGG | - | chr5.4:4261128-4261147 | None:intergenic | 55.0% | |
GGGCAGTAATGCTAAGGTGG+GGG | - | chr5.4:4261252-4261271 | None:intergenic | 55.0% | |
GTTCGGGTGGGTGAGAGTTT+AGG | + | chr5.4:4261476-4261495 | MS.gene22330:intron | 55.0% | |
TCGGAAAGAGGACCTGCACT+TGG | + | chr5.4:4260170-4260189 | MS.gene22330:CDS | 55.0% | |
TGAAGCACGGGCAAAGACAC+GGG | + | chr5.4:4259583-4259602 | MS.gene22330:intron | 55.0% | |
TGAAGTGCGGGTACTACCCA+AGG | - | chr5.4:4261129-4261148 | None:intergenic | 55.0% | |
! | AGGTTTCTTTGGGGGAAGGG+GGG | - | chr5.4:4259993-4260012 | None:intergenic | 55.0% |
! | CATTGTGCAAGTGGTTCGGG+TGG | + | chr5.4:4261463-4261482 | MS.gene22330:intron | 55.0% |
! | TCGGATTAGGTGGTGTGTCC+CGG | - | chr5.4:4259688-4259707 | None:intergenic | 55.0% |
!! | CAGCTCTGGAGGTGTGGTAT+TGG | + | chr5.4:4260603-4260622 | MS.gene22330:intron | 55.0% |
GCACGGACACTCCTCGGATT+AGG | - | chr5.4:4259701-4259720 | None:intergenic | 60.0% | |
GGATGAACCGCACCATCTGC+TGG | - | chr5.4:4258174-4258193 | None:intergenic | 60.0% | |
GGGACACACCACCTAATCCG+AGG | + | chr5.4:4259687-4259706 | MS.gene22330:intron | 60.0% | |
! | CGGACACTCCTCGGATTAGG+TGG | - | chr5.4:4259698-4259717 | None:intergenic | 60.0% |
! | TAGAGCGTCATCTGTCGCGG+TGG | + | chr5.4:4261340-4261359 | MS.gene22330:intron | 60.0% |
! | TTTCTTTGGGGGAAGGGGGG+TGG | - | chr5.4:4259990-4260009 | None:intergenic | 60.0% |
ACCGACGCGTGTCTGACACC+GGG | + | chr5.4:4259667-4259686 | MS.gene22330:intron | 65.0% | |
CACCGACGCGTGTCTGACAC+CGG | + | chr5.4:4259666-4259685 | MS.gene22330:intron | 65.0% | |
GGATTGTGATGGCTGGGGGC+AGG | - | chr5.4:4260291-4260310 | None:intergenic | 65.0% | |
TTGTGATGGCTGGGGGCAGG+TGG | - | chr5.4:4260288-4260307 | None:intergenic | 65.0% | |
! | TCCCGGTGTCAGACACGCGT+CGG | - | chr5.4:4259671-4259690 | None:intergenic | 65.0% |
!! | AGGGGGGTGGACTGTGGAGG+CGG | - | chr5.4:4259977-4259996 | None:intergenic | 70.0% |
!! | GGAAGGGGGGTGGACTGTGG+AGG | - | chr5.4:4259980-4259999 | None:intergenic | 70.0% |
!! | GGGGGAAGGGGGGTGGACTG+TGG | - | chr5.4:4259983-4260002 | None:intergenic | 75.0% |
!! | GGGGGGTGGACTGTGGAGGC+GGG | - | chr5.4:4259976-4259995 | None:intergenic | 75.0% |
!! | GGGGGTGGACTGTGGAGGCG+GGG | - | chr5.4:4259975-4259994 | None:intergenic | 75.0% |
!! | GGGGTGGACTGTGGAGGCGG+GGG | - | chr5.4:4259974-4259993 | None:intergenic | 75.0% |
!! | GGGTGGACTGTGGAGGCGGG+GGG | - | chr5.4:4259973-4259992 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 4258142 | 4261858 | 4258142 | ID=MS.gene22330 |
chr5.4 | mRNA | 4258142 | 4261858 | 4258142 | ID=MS.gene22330.t1;Parent=MS.gene22330 |
chr5.4 | exon | 4258142 | 4258243 | 4258142 | ID=MS.gene22330.t1.exon1;Parent=MS.gene22330.t1 |
chr5.4 | CDS | 4258142 | 4258243 | 4258142 | ID=cds.MS.gene22330.t1;Parent=MS.gene22330.t1 |
chr5.4 | exon | 4258384 | 4258484 | 4258384 | ID=MS.gene22330.t1.exon2;Parent=MS.gene22330.t1 |
chr5.4 | CDS | 4258384 | 4258484 | 4258384 | ID=cds.MS.gene22330.t1;Parent=MS.gene22330.t1 |
chr5.4 | exon | 4259257 | 4259413 | 4259257 | ID=MS.gene22330.t1.exon3;Parent=MS.gene22330.t1 |
chr5.4 | CDS | 4259257 | 4259413 | 4259257 | ID=cds.MS.gene22330.t1;Parent=MS.gene22330.t1 |
chr5.4 | exon | 4260129 | 4260325 | 4260129 | ID=MS.gene22330.t1.exon4;Parent=MS.gene22330.t1 |
chr5.4 | CDS | 4260129 | 4260325 | 4260129 | ID=cds.MS.gene22330.t1;Parent=MS.gene22330.t1 |
chr5.4 | exon | 4260606 | 4260705 | 4260606 | ID=MS.gene22330.t1.exon5;Parent=MS.gene22330.t1 |
chr5.4 | CDS | 4260606 | 4260705 | 4260606 | ID=cds.MS.gene22330.t1;Parent=MS.gene22330.t1 |
chr5.4 | exon | 4261823 | 4261858 | 4261823 | ID=MS.gene22330.t1.exon6;Parent=MS.gene22330.t1 |
chr5.4 | CDS | 4261823 | 4261858 | 4261823 | ID=cds.MS.gene22330.t1;Parent=MS.gene22330.t1 |
Gene Sequence |
Protein sequence |