AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene22330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22330.t1 MTR_5g009720 97.826 230 5 0 1 230 1 230 8.41e-164 451
MS.gene22330.t1 MTR_8g099190 77.824 239 43 1 1 229 1 239 1.61e-132 373
MS.gene22330.t1 MTR_8g099190 74.104 251 43 2 1 229 1 251 9.97e-129 363
MS.gene22330.t1 MTR_8g099190 72.385 239 41 2 1 229 1 224 5.43e-118 335
MS.gene22330.t1 MTR_4g073800 71.364 220 61 1 1 218 1 220 1.61e-110 318
MS.gene22330.t1 MTR_8g099190 75.510 196 38 1 1 186 1 196 4.59e-103 297
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22330.t1 AT4G11150 79.476 229 47 0 1 229 1 229 4.18e-132 371
MS.gene22330.t1 AT1G64200 76.596 235 49 1 1 229 1 235 4.67e-128 361
MS.gene22330.t1 AT1G64200 76.211 227 48 1 1 221 1 227 2.27e-122 347
MS.gene22330.t1 AT3G08560 69.737 228 67 1 1 226 1 228 2.48e-108 311
MS.gene22330.t1 AT1G64200 76.316 190 39 1 1 184 1 190 9.61e-99 285

Find 49 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCTTTCTCTTCGGCTTCT+TGG 0.240421 5.4:-4258195 None:intergenic
TCTAAAAGATCTCGTTATTC+AGG 0.260442 5.4:+4259392 MS.gene22330:CDS
GCACTTGGTAGAGGAAGTTT+TGG 0.315846 5.4:+4260185 MS.gene22330:CDS
CAGCTCTGGAGGTGTGGTAT+TGG 0.325702 5.4:+4260603 MS.gene22330:intron
ATCATGGGGATTGTGATGGC+TGG 0.343640 5.4:-4260295 None:intergenic
CAGATCCGCAAGCAGCTCTT+TGG 0.350673 5.4:+4261820 MS.gene22330:intron
CTTTGCGCTCATACTCTTGA+CGG 0.390529 5.4:-4258434 None:intergenic
AAATACACTTGATGCTCGTT+TGG 0.406888 5.4:+4260654 MS.gene22330:CDS
TTTATTAACCACATCATCTT+GGG 0.412688 5.4:-4259304 None:intergenic
CCTCTTTCCGACACCTCAAT+AGG 0.416620 5.4:-4260158 None:intergenic
TCCTTATCAACAACGATCTC+TGG 0.422603 5.4:-4260252 None:intergenic
GATCTCGTTGGCTTTCTCTT+CGG 0.426517 5.4:-4258203 None:intergenic
CACCATCTGCTGGATTTGCT+TGG 0.437939 5.4:-4258161 None:intergenic
GTTGAATGCTTCACGGTTGA+AGG 0.443148 5.4:+4259272 MS.gene22330:CDS
ACCAGAGATCGTTGTTGATA+AGG 0.446783 5.4:+4260251 MS.gene22330:CDS
TGCTCAGGAGTATGCTGAAA+AGG 0.449579 5.4:+4260215 MS.gene22330:CDS
CTTTCTCTTCGGCTTCTTGG+CGG 0.452151 5.4:-4258192 None:intergenic
GGATGAACCGCACCATCTGC+TGG 0.455942 5.4:-4258171 None:intergenic
CTATGCAGTTGAATGCTTCA+CGG 0.456350 5.4:+4259265 MS.gene22330:CDS
TCATGGGGATTGTGATGGCT+GGG 0.459295 5.4:-4260294 None:intergenic
TTACATGTGGGAGTTTGTTA+CGG 0.463593 5.4:-4260687 None:intergenic
CGAGAAGTTGCAGTTGGTTG+AGG 0.469869 5.4:+4258395 MS.gene22330:CDS
AACATTACCAGTGGAGATCA+TGG 0.476950 5.4:-4260311 None:intergenic
ATGGGGATTGTGATGGCTGG+GGG 0.508306 5.4:-4260292 None:intergenic
CCTATTGAGGTGTCGGAAAG+AGG 0.513705 5.4:+4260158 MS.gene22330:CDS
TTGTTATTCTTCAGCTCTGG+AGG 0.520387 5.4:+4260592 MS.gene22330:intron
AGAGGACCTGCACTTGGTAG+AGG 0.521773 5.4:+4260176 MS.gene22330:CDS
CAATATCGAGAAGTTGCAGT+TGG 0.528790 5.4:+4258389 MS.gene22330:CDS
GCTCACATTCAAGAGTTCCT+TGG 0.530777 5.4:-4259343 None:intergenic
CATGGGGATTGTGATGGCTG+GGG 0.531144 5.4:-4260293 None:intergenic
CACATTCAAGAGTTCCTTGG+CGG 0.533307 5.4:-4259340 None:intergenic
ATTCTTCAGCTCTGGAGGTG+TGG 0.541669 5.4:+4260597 MS.gene22330:intron
ACATTACCAGTGGAGATCAT+GGG 0.551646 5.4:-4260310 None:intergenic
CTTCTGTCCTATTGAGGTGT+CGG 0.557410 5.4:+4260151 MS.gene22330:CDS
AAGAACCTTCTGTCCTATTG+AGG 0.558216 5.4:+4260145 MS.gene22330:CDS
GTGGTATTGGCTTCTCATGA+TGG 0.567055 5.4:+4260616 MS.gene22330:CDS
AAACTTCCTCTACCAAGTGC+AGG 0.570638 5.4:-4260182 None:intergenic
AATGAAAGAGTCTGCCGCCA+AGG 0.574070 5.4:+4259326 MS.gene22330:CDS
CGACACCTCAATAGGACAGA+AGG 0.579267 5.4:-4260150 None:intergenic
ACAATCCCCATGATCTCCAC+TGG 0.579484 5.4:+4260304 MS.gene22330:CDS
TCGGAAAGAGGACCTGCACT+TGG 0.588677 5.4:+4260170 MS.gene22330:CDS
AGCGGAAACAGAGATCTCGT+TGG 0.593299 5.4:-4258215 None:intergenic
CTCCAAGCAAATCCAGCAGA+TGG 0.599092 5.4:+4258159 MS.gene22330:CDS
TCTTCAAGCCCAAGATGATG+TGG 0.617482 5.4:+4259296 MS.gene22330:CDS
CATTACCAGTGGAGATCATG+GGG 0.626749 5.4:-4260309 None:intergenic
AGCAAATCCAGCAGATGGTG+CGG 0.627594 5.4:+4258164 MS.gene22330:CDS
GGAGATCATGGGGATTGTGA+TGG 0.645556 5.4:-4260299 None:intergenic
GAAGTGATGTACTTCTTCAG+CGG 0.656747 5.4:-4258233 None:intergenic
CTTGTCCAAAGAGCTGCTTG+CGG 0.716823 5.4:-4261825 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGATATAAATAATAAGAA+AGG - chr5.4:4259779-4259798 None:intergenic 10.0%
!! ATACTAAATTCAAATATATT+CGG - chr5.4:4258863-4258882 None:intergenic 10.0%
!!! TTATTTTCTCAAATTATTAT+CGG - chr5.4:4259611-4259630 None:intergenic 10.0%
!!! TTTTTAGTAAAAAAACTATT+TGG + chr5.4:4261677-4261696 MS.gene22330:intron 10.0%
!! AAAAAATTAACAAACAAAAG+AGG - chr5.4:4261286-4261305 None:intergenic 15.0%
!! AAAAATTAACAAACAAAAGA+GGG - chr5.4:4261285-4261304 None:intergenic 15.0%
!! AAAATATAATTGGAAAAATC+AGG - chr5.4:4259456-4259475 None:intergenic 15.0%
!! AAACAAATATCTAACATAAA+TGG - chr5.4:4260786-4260805 None:intergenic 15.0%
!! ATAACAAATAATACAATATC+AGG - chr5.4:4260579-4260598 None:intergenic 15.0%
!! TGAAAAATGAAATTAAGAAA+TGG - chr5.4:4258267-4258286 None:intergenic 15.0%
!!! AAATAACGTAAAATTTTGTT+AGG - chr5.4:4260013-4260032 None:intergenic 15.0%
!!! CATATAGTTTTAGATTTATT+TGG + chr5.4:4258627-4258646 MS.gene22330:intron 15.0%
!!! GTTGTGATATTATATTTTTT+AGG + chr5.4:4260476-4260495 MS.gene22330:intron 15.0%
!!! TTTCCAATTATATTTTCAAT+AGG + chr5.4:4259460-4259479 MS.gene22330:intron 15.0%
!! AAAGTACAAGTTATAATCAA+CGG - chr5.4:4261205-4261224 None:intergenic 20.0%
!! AATGAAATTAAGAAATGGAT+CGG - chr5.4:4258262-4258281 None:intergenic 20.0%
!! AATTGATCACAAAACTTATA+TGG + chr5.4:4258523-4258542 MS.gene22330:intron 20.0%
!! ATCCAACTATTATAATTGAA+TGG - chr5.4:4258691-4258710 None:intergenic 20.0%
!! ATTAAAACAATCCATTATAC+CGG + chr5.4:4260368-4260387 MS.gene22330:intron 20.0%
!! CTTTCAATATTTGCAATATA+AGG + chr5.4:4261166-4261185 MS.gene22330:intron 20.0%
!! GAAACTTGGAATTAAATATA+AGG + chr5.4:4260092-4260111 MS.gene22330:intron 20.0%
!! GACTATTTATTTACATAATC+TGG + chr5.4:4261309-4261328 MS.gene22330:intron 20.0%
!! GATCCTATTGAAAATATAAT+TGG - chr5.4:4259466-4259485 None:intergenic 20.0%
!! GCATATTCTTATAAAATTCT+AGG - chr5.4:4259488-4259507 None:intergenic 20.0%
!! TACTAAAAATCACATTTGAA+GGG - chr5.4:4261666-4261685 None:intergenic 20.0%
!! TATAACAAAAACTTACATGT+GGG - chr5.4:4260702-4260721 None:intergenic 20.0%
!! TCAATTATAATAGTTGGATT+TGG + chr5.4:4258692-4258711 MS.gene22330:intron 20.0%
!! TTAATCAAGAACAGTTATTT+AGG - chr5.4:4260353-4260372 None:intergenic 20.0%
!! TTACTAAAAATCACATTTGA+AGG - chr5.4:4261667-4261686 None:intergenic 20.0%
!! TTATAACAAAAACTTACATG+TGG - chr5.4:4260703-4260722 None:intergenic 20.0%
!!! AAAATTTTGTTAGGTTTCTT+TGG - chr5.4:4260004-4260023 None:intergenic 20.0%
!!! AAATTTTGTTAGGTTTCTTT+GGG - chr5.4:4260003-4260022 None:intergenic 20.0%
!!! CTACTTGGAATATAATTTTA+GGG + chr5.4:4259934-4259953 MS.gene22330:intron 20.0%
!!! GGTCAGTTAAAATTTTAATA+TGG + chr5.4:4259413-4259432 MS.gene22330:intron 20.0%
!!! TAAAACGTAGTTTTTATACT+AGG + chr5.4:4261751-4261770 MS.gene22330:intron 20.0%
!!! TATCGTTGATTAATAGAATT+TGG + chr5.4:4259055-4259074 MS.gene22330:intron 20.0%
!!! TCTACTTGGAATATAATTTT+AGG + chr5.4:4259933-4259952 MS.gene22330:intron 20.0%
!!! TCTTTTTCTAACTTGAAAAA+TGG + chr5.4:4259190-4259209 MS.gene22330:intron 20.0%
!!! TTAACTTTTTTTTTTCCCTT+GGG + chr5.4:4261110-4261129 MS.gene22330:intron 20.0%
!!! TTGTTATTTACATATGTGAA+TGG + chr5.4:4258547-4258566 MS.gene22330:intron 20.0%
! AAACACACTATATAAATACC+GGG - chr5.4:4261606-4261625 None:intergenic 25.0%
! AATAATAAGAAAGGATGAGA+AGG - chr5.4:4259770-4259789 None:intergenic 25.0%
! ACGATCTATTAAACAAAACA+TGG - chr5.4:4258331-4258350 None:intergenic 25.0%
! ATAAATTAGTTGCATTGTAC+AGG - chr5.4:4261527-4261546 None:intergenic 25.0%
! ATTTAATCAGTCATCATACT+TGG - chr5.4:4259087-4259106 None:intergenic 25.0%
! CAAACACACTATATAAATAC+CGG - chr5.4:4261607-4261626 None:intergenic 25.0%
! GGTATTTATATAGTGTGTTT+GGG + chr5.4:4261606-4261625 MS.gene22330:intron 25.0%
! TAAATTAGTTGCATTGTACA+GGG - chr5.4:4261526-4261545 None:intergenic 25.0%
! TAATATTGAGAAATGAAGTG+CGG - chr5.4:4261142-4261161 None:intergenic 25.0%
! TCAATTGTATAAGATCATCA+AGG + chr5.4:4258600-4258619 MS.gene22330:intron 25.0%
! TGCCATTCAATTATAATAGT+TGG + chr5.4:4258686-4258705 MS.gene22330:intron 25.0%
! TTTAAATGTAACATTACCAG+TGG - chr5.4:4260323-4260342 None:intergenic 25.0%
! TTTAGTGTAATCATATGTGT+TGG + chr5.4:4259636-4259655 MS.gene22330:intron 25.0%
! TTTATTAACCACATCATCTT+GGG - chr5.4:4259307-4259326 None:intergenic 25.0%
!! AATTTTGTTAGGTTTCTTTG+GGG - chr5.4:4260002-4260021 None:intergenic 25.0%
!! ATAGTTAGTTAACAGAGTTT+TGG - chr5.4:4261042-4261061 None:intergenic 25.0%
!! ATGTTTAAGATTTGAAACTC+AGG - chr5.4:4260516-4260535 None:intergenic 25.0%
!! TGTTTAAGATTTGAAACTCA+GGG - chr5.4:4260515-4260534 None:intergenic 25.0%
!! TTTTATTAACCACATCATCT+TGG - chr5.4:4259308-4259327 None:intergenic 25.0%
!! TTTTCTAACTTGAAAAATGG+TGG + chr5.4:4259193-4259212 MS.gene22330:intron 25.0%
!!! ACTGTTTCTATAGTTGATTA+AGG + chr5.4:4260547-4260566 MS.gene22330:intron 25.0%
!!! ATTAAGGTTTTGTGTTGAAT+AGG + chr5.4:4260994-4261013 MS.gene22330:intron 25.0%
!!! CTTAACTTTTTTTTTTCCCT+TGG + chr5.4:4261109-4261128 MS.gene22330:intron 25.0%
!!! GCATAGTGTTTTTTTTGTTT+GGG + chr5.4:4260750-4260769 MS.gene22330:intron 25.0%
!!! TGCATAGTGTTTTTTTTGTT+TGG + chr5.4:4260749-4260768 MS.gene22330:intron 25.0%
!!! TTAAGGTTTTGTGTTGAATA+GGG + chr5.4:4260995-4261014 MS.gene22330:intron 25.0%
AAAAGTTAAGAATGAAACGC+AGG - chr5.4:4261099-4261118 None:intergenic 30.0%
AAAATCAGGTAAACAACTAC+AGG - chr5.4:4259442-4259461 None:intergenic 30.0%
AATATTGAGAAATGAAGTGC+GGG - chr5.4:4261141-4261160 None:intergenic 30.0%
AATGAAATACTTGAGAGTTG+AGG + chr5.4:4260892-4260911 MS.gene22330:intron 30.0%
AGGAAAAGACATGGATTTAT+GGG + chr5.4:4261496-4261515 MS.gene22330:intron 30.0%
AGGAATTAGGAACTGTATAA+AGG + chr5.4:4260953-4260972 MS.gene22330:intron 30.0%
ATCAATTTCTGCATATGTGA+TGG + chr5.4:4261437-4261456 MS.gene22330:intron 30.0%
CGGTATTTATATAGTGTGTT+TGG + chr5.4:4261605-4261624 MS.gene22330:intron 30.0%
CTTACACAAATACTAAAACC+CGG + chr5.4:4261585-4261604 MS.gene22330:intron 30.0%
GAATTAGGAACTGTATAAAG+GGG + chr5.4:4260955-4260974 MS.gene22330:intron 30.0%
GATCCAACTATTGTAATTGA+AGG - chr5.4:4258839-4258858 None:intergenic 30.0%
GCAATCTATTCTGTAATTGA+AGG - chr5.4:4259522-4259541 None:intergenic 30.0%
GGAATTAGGAACTGTATAAA+GGG + chr5.4:4260954-4260973 MS.gene22330:intron 30.0%
TAGGAAAAGACATGGATTTA+TGG + chr5.4:4261495-4261514 MS.gene22330:intron 30.0%
TATGACTTCTAATCAAACCA+AGG - chr5.4:4261733-4261752 None:intergenic 30.0%
TATTCCAAGTAGACTTAAGA+AGG - chr5.4:4259926-4259945 None:intergenic 30.0%
TCAATTACAGAATAGATTGC+AGG + chr5.4:4259522-4259541 MS.gene22330:intron 30.0%
TCTAAAAGATCTCGTTATTC+AGG + chr5.4:4259392-4259411 MS.gene22330:CDS 30.0%
TGTCCTTCAATTACAATAGT+TGG + chr5.4:4258833-4258852 MS.gene22330:intron 30.0%
TTAACAAACAAAAGAGGGAA+AGG - chr5.4:4261280-4261299 None:intergenic 30.0%
TTACTTTGTGTATGGAAACT+TGG + chr5.4:4260078-4260097 MS.gene22330:intron 30.0%
TTTGTGTTGAATAGGGTAAA+GGG + chr5.4:4261002-4261021 MS.gene22330:intron 30.0%
! ATAAATTTTCCTCCAAACCT+TGG + chr5.4:4261713-4261732 MS.gene22330:intron 30.0%
! ATTTTGTTAGGTTTCTTTGG+GGG - chr5.4:4260001-4260020 None:intergenic 30.0%
! GAATAACGAGATCTTTTAGA+AGG - chr5.4:4259392-4259411 None:intergenic 30.0%
! GATCTTTTCTCATAGATCAT+TGG + chr5.4:4258998-4259017 MS.gene22330:intron 30.0%
! TACAATTGGTAGCAATTGAT+TGG + chr5.4:4258913-4258932 MS.gene22330:intron 30.0%
! TCTAGATGATTTTTGATCGT+CGG + chr5.4:4261395-4261414 MS.gene22330:intron 30.0%
! TTTTGTACACATGATGATCA+CGG - chr5.4:4259368-4259387 None:intergenic 30.0%
! TTTTGTGTTGAATAGGGTAA+AGG + chr5.4:4261001-4261020 MS.gene22330:intron 30.0%
!! TATTTGTTATTCTTCAGCTC+TGG + chr5.4:4260589-4260608 MS.gene22330:intron 30.0%
!!! GTATTTTACAGAGTTTGTTG+AGG + chr5.4:4260118-4260137 MS.gene22330:intron 30.0%
AAATACACTTGATGCTCGTT+TGG + chr5.4:4260654-4260673 MS.gene22330:CDS 35.0%
ACTGATGTGTCTAATGTCAT+GGG + chr5.4:4259850-4259869 MS.gene22330:intron 35.0%
ATCCATTATACCGGATTTCT+AGG + chr5.4:4260377-4260396 MS.gene22330:intron 35.0%
CAACGATATGTGATTAGTAC+TGG - chr5.4:4259043-4259062 None:intergenic 35.0%
CATCCAAAACGAGTTTACTT+TGG - chr5.4:4258786-4258805 None:intergenic 35.0%
CTTCTAATCAAACCAAGGTT+TGG - chr5.4:4261728-4261747 None:intergenic 35.0%
GGAAAAGACATGGATTTATG+GGG + chr5.4:4261497-4261516 MS.gene22330:intron 35.0%
TACCTAGAAATCCGGTATAA+TGG - chr5.4:4260382-4260401 None:intergenic 35.0%
TGAGAGTTTAGGAAAAGACA+TGG + chr5.4:4261487-4261506 MS.gene22330:intron 35.0%
! ATTATACCGGATTTCTAGGT+AGG + chr5.4:4260381-4260400 MS.gene22330:intron 35.0%
! CATCCAAAGTAAACTCGTTT+TGG + chr5.4:4258780-4258799 MS.gene22330:intron 35.0%
! CATGCACTTCGAATATTTTC+AGG - chr5.4:4261561-4261580 None:intergenic 35.0%
! TTATACCGGATTTCTAGGTA+GGG + chr5.4:4260382-4260401 MS.gene22330:intron 35.0%
!! GAATTACGCTGTTTTGTTGT+AGG + chr5.4:4258362-4258381 MS.gene22330:intron 35.0%
!! TGTGCTACTTACTTTGTGTA+TGG + chr5.4:4260070-4260089 MS.gene22330:intron 35.0%
!! TTACATGTGGGAGTTTGTTA+CGG - chr5.4:4260690-4260709 None:intergenic 35.0%
AACATTACCAGTGGAGATCA+TGG - chr5.4:4260314-4260333 None:intergenic 40.0%
AACTGTATAAAGGGGCAGAA+CGG + chr5.4:4260963-4260982 MS.gene22330:intron 40.0%
AAGAACCTTCTGTCCTATTG+AGG + chr5.4:4260145-4260164 MS.gene22330:CDS 40.0%
AAGGCCTTCTTAAGTCTACT+TGG + chr5.4:4259919-4259938 MS.gene22330:intron 40.0%
ACAAAAGAGGGAAAGGAAGT+TGG - chr5.4:4261273-4261292 None:intergenic 40.0%
ACATTACCAGTGGAGATCAT+GGG - chr5.4:4260313-4260332 None:intergenic 40.0%
ACCAGAGATCGTTGTTGATA+AGG + chr5.4:4260251-4260270 MS.gene22330:CDS 40.0%
AGGTCAATTATGCACTGTGA+GGG + chr5.4:4260912-4260931 MS.gene22330:intron 40.0%
CAAAAGAGGGAAAGGAAGTT+GGG - chr5.4:4261272-4261291 None:intergenic 40.0%
CAATATCGAGAAGTTGCAGT+TGG + chr5.4:4258389-4258408 MS.gene22330:CDS 40.0%
CAATTCCCTACCTAGAAATC+CGG - chr5.4:4260390-4260409 None:intergenic 40.0%
CACAGTCTCACAGATACAAT+TGG + chr5.4:4258899-4258918 MS.gene22330:intron 40.0%
CACTGATGTGTCTAATGTCA+TGG + chr5.4:4259849-4259868 MS.gene22330:intron 40.0%
CATGACATTAGACACATCAG+TGG - chr5.4:4259851-4259870 None:intergenic 40.0%
CCTTGTTGACCAGTAAAAAG+GGG - chr5.4:4259903-4259922 None:intergenic 40.0%
CTAATCAAACCAAGGTTTGG+AGG - chr5.4:4261725-4261744 None:intergenic 40.0%
CTATGCAGTTGAATGCTTCA+CGG + chr5.4:4259265-4259284 MS.gene22330:CDS 40.0%
GAAGTGATGTACTTCTTCAG+CGG - chr5.4:4258236-4258255 None:intergenic 40.0%
GCTTCTTGAAGCAATACCAT+TGG - chr5.4:4259824-4259843 None:intergenic 40.0%
GGCTGTGGTATTTAGGTATA+GGG + chr5.4:4259557-4259576 MS.gene22330:intron 40.0%
TCCTTATCAACAACGATCTC+TGG - chr5.4:4260255-4260274 None:intergenic 40.0%
TTGGGCATGTAACAGGAATT+AGG + chr5.4:4260940-4260959 MS.gene22330:intron 40.0%
! ACTGTCTTGTCGTTTGAGAA+AGG - chr5.4:4259745-4259764 None:intergenic 40.0%
! AGATTGCAGGACTTTGAGAA+AGG + chr5.4:4259535-4259554 MS.gene22330:intron 40.0%
! CAGAACGGACTTAAGGATTA+AGG + chr5.4:4260978-4260997 MS.gene22330:intron 40.0%
! CGATATGTGATTAGTACTGG+CGG - chr5.4:4259040-4259059 None:intergenic 40.0%
! CTGTCTTGTCGTTTGAGAAA+GGG - chr5.4:4259744-4259763 None:intergenic 40.0%
! GATTGCAGGACTTTGAGAAA+GGG + chr5.4:4259536-4259555 MS.gene22330:intron 40.0%
! GCCTTGTTGACCAGTAAAAA+GGG - chr5.4:4259904-4259923 None:intergenic 40.0%
! TGTGTTTGGGTTCACAATAG+AGG + chr5.4:4261619-4261638 MS.gene22330:intron 40.0%
! TTGTTATTCTTCAGCTCTGG+AGG + chr5.4:4260592-4260611 MS.gene22330:intron 40.0%
!! GATATGTGATTAGTACTGGC+GGG - chr5.4:4259039-4259058 None:intergenic 40.0%
!! TGTCTAGCTCTGTTAGTCAA+GGG + chr5.4:4260419-4260438 MS.gene22330:intron 40.0%
AAACTTCCTCTACCAAGTGC+AGG - chr5.4:4260185-4260204 None:intergenic 45.0%
ACCATTGGTGTGTCAGTTAG+TGG - chr5.4:4259809-4259828 None:intergenic 45.0%
AGGTATAGGGCTATGAAGCA+CGG + chr5.4:4259570-4259589 MS.gene22330:intron 45.0%
ATGCATTGTGCAAGTGGTTC+GGG + chr5.4:4261460-4261479 MS.gene22330:intron 45.0%
CACATTCAAGAGTTCCTTGG+CGG - chr5.4:4259343-4259362 None:intergenic 45.0%
CATTACCAGTGGAGATCATG+GGG - chr5.4:4260312-4260331 None:intergenic 45.0%
CTTCTGTCCTATTGAGGTGT+CGG + chr5.4:4260151-4260170 MS.gene22330:CDS 45.0%
CTTTGCGCTCATACTCTTGA+CGG - chr5.4:4258437-4258456 None:intergenic 45.0%
GAAGTTGGGCAGTAATGCTA+AGG - chr5.4:4261258-4261277 None:intergenic 45.0%
GAGAAAGGGCTGTGGTATTT+AGG + chr5.4:4259550-4259569 MS.gene22330:intron 45.0%
GAGGTCAATTATGCACTGTG+AGG + chr5.4:4260911-4260930 MS.gene22330:intron 45.0%
GATGCATTGTGCAAGTGGTT+CGG + chr5.4:4261459-4261478 MS.gene22330:intron 45.0%
GCTAGAAGCAATCTGAGCAA+TGG - chr5.4:4261068-4261087 None:intergenic 45.0%
GCTCACATTCAAGAGTTCCT+TGG - chr5.4:4259346-4259365 None:intergenic 45.0%
GGAAGAGAAGCAGGATGATA+GGG - chr5.4:4259882-4259901 None:intergenic 45.0%
GGGCTGTGGTATTTAGGTAT+AGG + chr5.4:4259556-4259575 MS.gene22330:intron 45.0%
GTAAAAAGGGGAAGAGAAGC+AGG - chr5.4:4259891-4259910 None:intergenic 45.0%
GTTGAATGCTTCACGGTTGA+AGG + chr5.4:4259272-4259291 MS.gene22330:CDS 45.0%
TCCACTAACTGACACACCAA+TGG + chr5.4:4259805-4259824 MS.gene22330:intron 45.0%
TCTCTCGGGTCTAACTTGAT+TGG + chr5.4:4260454-4260473 MS.gene22330:intron 45.0%
TCTTCAAGCCCAAGATGATG+TGG + chr5.4:4259296-4259315 MS.gene22330:CDS 45.0%
TGAGAAAGGGCTGTGGTATA+GGG - chr5.4:4259731-4259750 None:intergenic 45.0%
TGGTATAGGGCTATGAAGCA+CGG - chr5.4:4259718-4259737 None:intergenic 45.0%
TTGAGAAAGGGCTGTGGTAT+AGG - chr5.4:4259567-4259548 None:intergenic 45.0%
TTGGGCAGTAATGCTAAGGT+GGG - chr5.4:4261254-4261273 None:intergenic 45.0%
! CCCCTTTTTACTGGTCAACA+AGG + chr5.4:4259900-4259919 MS.gene22330:intron 45.0%
! GCACTTGGTAGAGGAAGTTT+TGG + chr5.4:4260185-4260204 MS.gene22330:CDS 45.0%
! GCTTCTCTTCCCCTTTTTAC+TGG + chr5.4:4259891-4259910 MS.gene22330:intron 45.0%
! GTTAGGTTTCTTTGGGGGAA+GGG - chr5.4:4259996-4260015 None:intergenic 45.0%
! TGATGGATGCATTGTGCAAG+TGG + chr5.4:4261454-4261473 MS.gene22330:intron 45.0%
! TGCTCAGGAGTATGCTGAAA+AGG + chr5.4:4260215-4260234 MS.gene22330:CDS 45.0%
! TGTTAGGTTTCTTTGGGGGA+AGG - chr5.4:4259997-4260016 None:intergenic 45.0%
! TTAGGTTTCTTTGGGGGAAG+GGG - chr5.4:4259995-4260014 None:intergenic 45.0%
!! AGGTGGGGGAGTATCTATTT+AGG - chr5.4:4261238-4261257 None:intergenic 45.0%
!! CGACAGATGACGCTCTAAAA+AGG - chr5.4:4261337-4261356 None:intergenic 45.0%
!! GATCTCGTTGGCTTTCTCTT+CGG - chr5.4:4258206-4258225 None:intergenic 45.0%
!! GGCCTTGTTGACCAGTAAAA+AGG - chr5.4:4259905-4259924 None:intergenic 45.0%
!! GGGGGAGTATCTATTTAGGA+AGG - chr5.4:4261234-4261253 None:intergenic 45.0%
!! GTGGTATTGGCTTCTCATGA+TGG + chr5.4:4260616-4260635 MS.gene22330:CDS 45.0%
!! GTGTCTAGCTCTGTTAGTCA+AGG + chr5.4:4260418-4260437 MS.gene22330:intron 45.0%
!!! AGTTTTGGATTCAGCTGCTC+AGG + chr5.4:4260200-4260219 MS.gene22330:CDS 45.0%
!!! TTTTAGAGCGTCATCTGTCG+CGG + chr5.4:4261337-4261356 MS.gene22330:intron 45.0%
!! AAAAAAAAAAAATATGTAAA+AGG - chr5.4:4258494-4258513 None:intergenic 5.0%
AATGAAAGAGTCTGCCGCCA+AGG + chr5.4:4259326-4259345 MS.gene22330:CDS 50.0%
ACAATCCCCATGATCTCCAC+TGG + chr5.4:4260304-4260323 MS.gene22330:CDS 50.0%
AGCAAATCCAGCAGATGGTG+CGG + chr5.4:4258164-4258183 MS.gene22330:CDS 50.0%
AGCGGAAACAGAGATCTCGT+TGG - chr5.4:4258218-4258237 None:intergenic 50.0%
ATCATGGGGATTGTGATGGC+TGG - chr5.4:4260298-4260317 None:intergenic 50.0%
ATGAAGCACGGGCAAAGACA+CGG + chr5.4:4259582-4259601 MS.gene22330:intron 50.0%
ATGCACTGTGAGGGACAACT+TGG + chr5.4:4260921-4260940 MS.gene22330:intron 50.0%
CCTCTTTCCGACACCTCAAT+AGG - chr5.4:4260161-4260180 None:intergenic 50.0%
CGACACCTCAATAGGACAGA+AGG - chr5.4:4260153-4260172 None:intergenic 50.0%
CGAGAAGTTGCAGTTGGTTG+AGG + chr5.4:4258395-4258414 MS.gene22330:CDS 50.0%
CTCCAAGCAAATCCAGCAGA+TGG + chr5.4:4258159-4258178 MS.gene22330:CDS 50.0%
CTTGTCCAAAGAGCTGCTTG+CGG - chr5.4:4261828-4261847 None:intergenic 50.0%
CTTTCTCTTCGGCTTCTTGG+CGG - chr5.4:4258195-4258214 None:intergenic 50.0%
GCTCAGATTGCTTCTAGCAC+TGG + chr5.4:4261070-4261089 MS.gene22330:intron 50.0%
GGACAACTTGGGCATGTAAC+AGG + chr5.4:4260933-4260952 MS.gene22330:intron 50.0%
GGAGATCATGGGGATTGTGA+TGG - chr5.4:4260302-4260321 None:intergenic 50.0%
GGGAAGAGAAGCAGGATGAT+AGG - chr5.4:4259883-4259902 None:intergenic 50.0%
GGTATAGGGCTATGAAGCAC+GGG + chr5.4:4259571-4259590 MS.gene22330:intron 50.0%
GTTGGGCAGTAATGCTAAGG+TGG - chr5.4:4261255-4261274 None:intergenic 50.0%
TATGAAGCACGGACACTCCT+CGG - chr5.4:4259707-4259726 None:intergenic 50.0%
TCATGGGGATTGTGATGGCT+GGG - chr5.4:4260297-4260316 None:intergenic 50.0%
TGCACTGTGAGGGACAACTT+GGG + chr5.4:4260922-4260941 MS.gene22330:intron 50.0%
TGGCTTTCTCTTCGGCTTCT+TGG - chr5.4:4258198-4258217 None:intergenic 50.0%
TGGGCAGTAATGCTAAGGTG+GGG - chr5.4:4261253-4261272 None:intergenic 50.0%
! AAAGGGGCAGAACGGACTTA+AGG + chr5.4:4260971-4260990 MS.gene22330:intron 50.0%
! AGGACTTTGAGAAAGGGCTG+TGG + chr5.4:4259542-4259561 MS.gene22330:intron 50.0%
! ATTGTGCAAGTGGTTCGGGT+GGG + chr5.4:4261464-4261483 MS.gene22330:intron 50.0%
! CACCATCTGCTGGATTTGCT+TGG - chr5.4:4258164-4258183 None:intergenic 50.0%
! TAGGTTTCTTTGGGGGAAGG+GGG - chr5.4:4259994-4260013 None:intergenic 50.0%
! TGTCGTTTGAGAAAGGGCTG+TGG - chr5.4:4259738-4259757 None:intergenic 50.0%
!! ATTCTTCAGCTCTGGAGGTG+TGG + chr5.4:4260597-4260616 MS.gene22330:intron 50.0%
!! CCTATTGAGGTGTCGGAAAG+AGG + chr5.4:4260158-4260177 MS.gene22330:CDS 50.0%
!! GGCTTGCATCTAGTTCTCTC+GGG + chr5.4:4260440-4260459 MS.gene22330:intron 50.0%
!! GGGCTTGCATCTAGTTCTCT+CGG + chr5.4:4260439-4260458 MS.gene22330:intron 50.0%
AGAGGACCTGCACTTGGTAG+AGG + chr5.4:4260176-4260195 MS.gene22330:CDS 55.0%
ATGGGGATTGTGATGGCTGG+GGG - chr5.4:4260295-4260314 None:intergenic 55.0%
CAGATCCGCAAGCAGCTCTT+TGG + chr5.4:4261820-4261839 MS.gene22330:intron 55.0%
CATGGGGATTGTGATGGCTG+GGG - chr5.4:4260296-4260315 None:intergenic 55.0%
GAAGTGCGGGTACTACCCAA+GGG - chr5.4:4261128-4261147 None:intergenic 55.0%
GGGCAGTAATGCTAAGGTGG+GGG - chr5.4:4261252-4261271 None:intergenic 55.0%
GTTCGGGTGGGTGAGAGTTT+AGG + chr5.4:4261476-4261495 MS.gene22330:intron 55.0%
TCGGAAAGAGGACCTGCACT+TGG + chr5.4:4260170-4260189 MS.gene22330:CDS 55.0%
TGAAGCACGGGCAAAGACAC+GGG + chr5.4:4259583-4259602 MS.gene22330:intron 55.0%
TGAAGTGCGGGTACTACCCA+AGG - chr5.4:4261129-4261148 None:intergenic 55.0%
! AGGTTTCTTTGGGGGAAGGG+GGG - chr5.4:4259993-4260012 None:intergenic 55.0%
! CATTGTGCAAGTGGTTCGGG+TGG + chr5.4:4261463-4261482 MS.gene22330:intron 55.0%
! TCGGATTAGGTGGTGTGTCC+CGG - chr5.4:4259688-4259707 None:intergenic 55.0%
!! CAGCTCTGGAGGTGTGGTAT+TGG + chr5.4:4260603-4260622 MS.gene22330:intron 55.0%
GCACGGACACTCCTCGGATT+AGG - chr5.4:4259701-4259720 None:intergenic 60.0%
GGATGAACCGCACCATCTGC+TGG - chr5.4:4258174-4258193 None:intergenic 60.0%
GGGACACACCACCTAATCCG+AGG + chr5.4:4259687-4259706 MS.gene22330:intron 60.0%
! CGGACACTCCTCGGATTAGG+TGG - chr5.4:4259698-4259717 None:intergenic 60.0%
! TAGAGCGTCATCTGTCGCGG+TGG + chr5.4:4261340-4261359 MS.gene22330:intron 60.0%
! TTTCTTTGGGGGAAGGGGGG+TGG - chr5.4:4259990-4260009 None:intergenic 60.0%
ACCGACGCGTGTCTGACACC+GGG + chr5.4:4259667-4259686 MS.gene22330:intron 65.0%
CACCGACGCGTGTCTGACAC+CGG + chr5.4:4259666-4259685 MS.gene22330:intron 65.0%
GGATTGTGATGGCTGGGGGC+AGG - chr5.4:4260291-4260310 None:intergenic 65.0%
TTGTGATGGCTGGGGGCAGG+TGG - chr5.4:4260288-4260307 None:intergenic 65.0%
! TCCCGGTGTCAGACACGCGT+CGG - chr5.4:4259671-4259690 None:intergenic 65.0%
!! AGGGGGGTGGACTGTGGAGG+CGG - chr5.4:4259977-4259996 None:intergenic 70.0%
!! GGAAGGGGGGTGGACTGTGG+AGG - chr5.4:4259980-4259999 None:intergenic 70.0%
!! GGGGGAAGGGGGGTGGACTG+TGG - chr5.4:4259983-4260002 None:intergenic 75.0%
!! GGGGGGTGGACTGTGGAGGC+GGG - chr5.4:4259976-4259995 None:intergenic 75.0%
!! GGGGGTGGACTGTGGAGGCG+GGG - chr5.4:4259975-4259994 None:intergenic 75.0%
!! GGGGTGGACTGTGGAGGCGG+GGG - chr5.4:4259974-4259993 None:intergenic 75.0%
!! GGGTGGACTGTGGAGGCGGG+GGG - chr5.4:4259973-4259992 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 4258142 4261858 4258142 ID=MS.gene22330
chr5.4 mRNA 4258142 4261858 4258142 ID=MS.gene22330.t1;Parent=MS.gene22330
chr5.4 exon 4258142 4258243 4258142 ID=MS.gene22330.t1.exon1;Parent=MS.gene22330.t1
chr5.4 CDS 4258142 4258243 4258142 ID=cds.MS.gene22330.t1;Parent=MS.gene22330.t1
chr5.4 exon 4258384 4258484 4258384 ID=MS.gene22330.t1.exon2;Parent=MS.gene22330.t1
chr5.4 CDS 4258384 4258484 4258384 ID=cds.MS.gene22330.t1;Parent=MS.gene22330.t1
chr5.4 exon 4259257 4259413 4259257 ID=MS.gene22330.t1.exon3;Parent=MS.gene22330.t1
chr5.4 CDS 4259257 4259413 4259257 ID=cds.MS.gene22330.t1;Parent=MS.gene22330.t1
chr5.4 exon 4260129 4260325 4260129 ID=MS.gene22330.t1.exon4;Parent=MS.gene22330.t1
chr5.4 CDS 4260129 4260325 4260129 ID=cds.MS.gene22330.t1;Parent=MS.gene22330.t1
chr5.4 exon 4260606 4260705 4260606 ID=MS.gene22330.t1.exon5;Parent=MS.gene22330.t1
chr5.4 CDS 4260606 4260705 4260606 ID=cds.MS.gene22330.t1;Parent=MS.gene22330.t1
chr5.4 exon 4261823 4261858 4261823 ID=MS.gene22330.t1.exon6;Parent=MS.gene22330.t1
chr5.4 CDS 4261823 4261858 4261823 ID=cds.MS.gene22330.t1;Parent=MS.gene22330.t1
Gene Sequence

>MS.gene22330

ATGAACGACGCAGATGTCTCCAAGCAAATCCAGCAGATGGTGCGGTTCATCCGCCAAGAAGCCGAAGAGAAAGCCAACGAGATCTCTGTTTCCGCTGAAGAAGTACATCACTTCATTCCGATCCATTTCTTAATTTCATTTTTCATCACTCTTTTACTTTAGATCGTTAATTTCTTACTTATTGATCCATGTTTTGTTTAATAGATCGTTAATTTGATGAGAATTACGCTGTTTTGTTGTAGGAATTCAATATCGAGAAGTTGCAGTTGGTTGAGGCTGATAAGAAGAAGATCCGTCAAGAGTATGAGCGCAAAGAGAAGCAAGTTGATGTTCGTAAGAAGATGTAATGCCTTTTACATATTTTTTTTTTTTTCATCTATAAATTGATCACAAAACTTATATGGATTGTTATTTACATATGTGAATGGTTTATAAGTTATGAATTCTCACTTTAATTCTCAATTGTATAAGATCATCAAGGTTTTCATATAGTTTTAGATTTATTTGGCATGTTTGAATCACTGAATATAAGCTTTTCTTACGCTGCCATTCAATTATAATAGTTGGATTTGGTATTAACTATTTAAAACTCACAGATACAATTGATTGACAATGTAAAATACTTTACACTGACATTGCATCCAAAGTAAACTCGTTTTGGATGCTTTGTCTGTGTAAAGATTCTGTATACTGTCCTTCAATTACAATAGTTGGATCACCGAATATATTTGAATTTAGTATTAACTATTTTAAAAGTCACAGTCTCACAGATACAATTGGTAGCAATTGATTGGCAGTGTAAAAAGTTTTACACTGAACTGTACATCAAAATTAAACTCTAGATTATAATGACTGTGATCTTTTCTCATAGATCATTGGTAAAGTCGAACAGATCCCGCCAGTACTAATCACATATCGTTGATTAATAGAATTTGGTATTTTCCAAGTATGATGACTGATTAAATTTCTTTCTTATAAGTGAGATTTAGAGTTTAATTTTGTACTTTTGTTGAGTTTTTTTTTTTCTTAATCAAATGCTTTGTATTTTTCTTTTTCTAACTTGAAAAATGGTGGTAGTTGAGATAATTTAAATTTCACACATTTGTTTGTTGCAGTGAGTACTCTATGCAGTTGAATGCTTCACGGTTGAAGGTTCTTCAAGCCCAAGATGATGTGGTTAATAAAATGAAAGAGTCTGCCGCCAAGGAACTCTTGAATGTGAGCCGTGATCATCATGTGTACAAAAACCTTCTAAAAGATCTCGTTATTCAGGTCAGTTAAAATTTTAATATGGCAGCCTGTAGTTGTTTACCTGATTTTTCCAATTATATTTTCAATAGGATCCTAGAATTTTATAAGAATATGCAACAAAGAGTTCCTTCAATTACAGAATAGATTGCAGGACTTTGAGAAAGGGCTGTGGTATTTAGGTATAGGGCTATGAAGCACGGGCAAAGACACGGGCACCGATAATAATTTGAGAAAATAACAAAATTTAGTGTAATCATATGTGTTGGTGTCAGACACCGACGCGTGTCTGACACCGGGACACACCACCTAATCCGAGGAGTGTCCGTGCTTCATAGCCCTATACCACAGCCCTTTCTCAAACGACAAGACAGTCTCCTTCTCATCCTTTCTTATTATTTATATCTTTACTTATTCCACTAACTGACACACCAATGGTATTGCTTCAAGAAGCAATACCACTGATGTGTCTAATGTCATGGGTTCTGTCCCTATCATCCTGCTTCTCTTCCCCTTTTTACTGGTCAACAAGGCCTTCTTAAGTCTACTTGGAATATAATTTTAGGGTTGTAATTGACAGCCCCCCGCCTCCACAGTCCACCCCCCTTCCCCCAAAGAAACCTAACAAAATTTTACGTTATTTTGCTTCTTCAAAAAAATAAAAAATTTATGTTATTTTATGTGCTACTTACTTTGTGTATGGAAACTTGGAATTAAATATAAGGATTGTATTTTACAGAGTTTGTTGAGGCTGAAAGAACCTTCTGTCCTATTGAGGTGTCGGAAAGAGGACCTGCACTTGGTAGAGGAAGTTTTGGATTCAGCTGCTCAGGAGTATGCTGAAAAGGCAAATGTTCATGAACCAGAGATCGTTGTTGATAAGGATATCTATCTTCCACCTGCCCCCAGCCATCACAATCCCCATGATCTCCACTGGTAATGTTACATTTAAAACTAAATCCTAAATAACTGTTCTTGATTAAAACAATCCATTATACCGGATTTCTAGGTAGGGAATTGTTATGTAAGTGTCTAGCTCTGTTAGTCAAGGGCTTGCATCTAGTTCTCTCGGGTCTAACTTGATTGGTTGTGATATTATATTTTTTAGGTTTAAAAAGAGAACCCTGAGTTTCAAATCTTAAACATTACTAGTTTTTACTGTTTCTATAGTTGATTAAGGACGTTTCCTGATATTGTATTATTTGTTATTCTTCAGCTCTGGAGGTGTGGTATTGGCTTCTCATGATGGAAAGATTGTGTTTGAAAATACACTTGATGCTCGTTTGGATGTAGTATTCCGTAACAAACTCCCACATGTAAGTTTTTGTTATAAAATAGACTTTTTGCTCAATAGCATTTTGCATAGTGTTTTTTTTGTTTGGGTAGTTTTGTTCCATTTATGTTAGATATTTGTTTCTTAATTGTCTGTCATTTTGATTCAACTAGAAAGCTAGTTTCAAGAAGATCATTGTTCTTCTATAATCTTCAATGTTGCAAAACGAAATGAAATACTTGAGAGTTGAGGTCAATTATGCACTGTGAGGGACAACTTGGGCATGTAACAGGAATTAGGAACTGTATAAAGGGGCAGAACGGACTTAAGGATTAAGGTTTTGTGTTGAATAGGGTAAAGGGATGCAATTTTTCAACCAAAACTCTGTTAACTAACTATCAACCATTGCTCAGATTGCTTCTAGCACTGGCGACCTGCGTTTCATTCTTAACTTTTTTTTTTCCCTTGGGTAGTACCCGCACTTCATTTCTCAATATTACACACTTTCAATATTTGCAATATAAGGTAAAATGTTACTGCCGTTGATTATAACTTGTACTTTATTTCTCCTTCCTAAATAGATACTCCCCCACCTTAGCATTACTGCCCAACTTCCTTTCCCTCTTTTGTTTGTTAATTTTTTTCAGACTATTTATTTACATAATCTGGTACCTTTTTAGAGCGTCATCTGTCGCGGTGGATTTTTGAACTGTGAATAGCTGTGTAATTTTATCTAGATGATTTTTGATCGTCGGCAATTTTGTCTCAACGTTGATCAATTTCTGCATATGTGATGGATGCATTGTGCAAGTGGTTCGGGTGGGTGAGAGTTTAGGAAAAGACATGGATTTATGGGGTAGCCCTGTACAATGCAACTAATTTATAGTGTCTTGTTCCTGAAAATATTCGAAGTGCATGTACTCTTACACAAATACTAAAACCCGGTATTTATATAGTGTGTTTGGGTTCACAATAGAGGTTGTCAAACATGATTCTTTCTCCCTTCAAATGTGATTTTTAGTAAAAAAACTATTTGGTTATTTTCAATCAATAAATTTTCCTCCAAACCTTGGTTTGATTAGAAGTCATAAAACGTAGTTTTTATACTAGGTAGTTTCACATCAATTTATTGAAAATTTGTTATTTGTTTCTTGCTACAGATCCGCAAGCAGCTCTTTGGACAAGTTGCTGTTTGA

Protein sequence

>MS.gene22330.t1

MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEADKKKIRQEYERKEKQVDVRKKIEYSMQLNASRLKVLQAQDDVVNKMKESAAKELLNVSRDHHVYKNLLKDLVIQSLLRLKEPSVLLRCRKEDLHLVEEVLDSAAQEYAEKANVHEPEIVVDKDIYLPPAPSHHNPHDLHCSGGVVLASHDGKIVFENTLDARLDVVFRNKLPHIRKQLFGQVAV