Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21642.t1 | XP_003611036.1 | 97.8 | 230 | 5 | 0 | 1 | 230 | 1 | 230 | 1.90E-115 | 425.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21642.t1 | Q41396 | 80.3 | 229 | 44 | 1 | 1 | 229 | 1 | 228 | 2.3e-93 | 343.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21642.t1 | B7FMK2 | 97.8 | 230 | 5 | 0 | 1 | 230 | 1 | 230 | 1.4e-115 | 425.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene44998 | MS.gene21642 | PPI |
MS.gene21642 | MS.gene87386 | PPI |
MS.gene048900 | MS.gene21642 | PPI |
MS.gene024661 | MS.gene21642 | PPI |
MS.gene21642 | MS.gene003523 | PPI |
MS.gene21642 | MS.gene52076 | PPI |
MS.gene21642 | MS.gene011917 | PPI |
MS.gene22330 | MS.gene21642 | PPI |
MS.gene55771 | MS.gene21642 | PPI |
MS.gene21642 | MS.gene057707 | PPI |
MS.gene072752 | MS.gene21642 | PPI |
MS.gene21642 | MS.gene06042 | PPI |
MS.gene91075 | MS.gene21642 | PPI |
MS.gene21642 | MS.gene22330 | PPI |
MS.gene90980 | MS.gene21642 | PPI |
MS.gene28505 | MS.gene21642 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21642.t1 | MTR_5g009720 | 97.826 | 230 | 5 | 0 | 1 | 230 | 1 | 230 | 8.41e-164 | 451 |
MS.gene21642.t1 | MTR_8g099190 | 77.824 | 239 | 43 | 1 | 1 | 229 | 1 | 239 | 1.61e-132 | 373 |
MS.gene21642.t1 | MTR_8g099190 | 74.104 | 251 | 43 | 2 | 1 | 229 | 1 | 251 | 9.97e-129 | 363 |
MS.gene21642.t1 | MTR_8g099190 | 72.385 | 239 | 41 | 2 | 1 | 229 | 1 | 224 | 5.43e-118 | 335 |
MS.gene21642.t1 | MTR_4g073800 | 71.364 | 220 | 61 | 1 | 1 | 218 | 1 | 220 | 1.61e-110 | 318 |
MS.gene21642.t1 | MTR_8g099190 | 75.510 | 196 | 38 | 1 | 1 | 186 | 1 | 196 | 4.59e-103 | 297 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21642.t1 | AT4G11150 | 79.476 | 229 | 47 | 0 | 1 | 229 | 1 | 229 | 4.18e-132 | 371 |
MS.gene21642.t1 | AT1G64200 | 76.596 | 235 | 49 | 1 | 1 | 229 | 1 | 235 | 4.67e-128 | 361 |
MS.gene21642.t1 | AT1G64200 | 76.211 | 227 | 48 | 1 | 1 | 221 | 1 | 227 | 2.27e-122 | 347 |
MS.gene21642.t1 | AT3G08560 | 69.737 | 228 | 67 | 1 | 1 | 226 | 1 | 228 | 2.48e-108 | 311 |
MS.gene21642.t1 | AT1G64200 | 76.316 | 190 | 39 | 1 | 1 | 184 | 1 | 190 | 9.61e-99 | 285 |
Find 49 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGCTTTCTCTTCGGCTTCT+TGG | 0.240421 | 5.2:-3289919 | None:intergenic |
TCTAAAAGATCTCGTTATTC+AGG | 0.260442 | 5.2:+3291111 | MS.gene21642:CDS |
GCACTTGGTAGAGGAAGTTT+TGG | 0.315846 | 5.2:+3291919 | MS.gene21642:CDS |
CAGCTCTGGAGGTGTGGTAT+TGG | 0.325702 | 5.2:+3292337 | MS.gene21642:intron |
ATCATGGGGATTGTGATGGC+TGG | 0.343640 | 5.2:-3292029 | None:intergenic |
CAGATCCGCAAGCAGCTCTT+TGG | 0.350673 | 5.2:+3293557 | MS.gene21642:intron |
CTTTGCGCTCATACTCTTGA+CGG | 0.390529 | 5.2:-3290159 | None:intergenic |
AAATACACTTGATGCTCGTT+TGG | 0.406888 | 5.2:+3292388 | MS.gene21642:CDS |
TTTATTAACCACATCATCTT+GGG | 0.412688 | 5.2:-3291023 | None:intergenic |
CCTCTTTCCGACACCTCAAT+AGG | 0.416620 | 5.2:-3291892 | None:intergenic |
TCCTTATCAACAACGATCTC+TGG | 0.422603 | 5.2:-3291986 | None:intergenic |
GATCTCGTTGGCTTTCTCTT+CGG | 0.426517 | 5.2:-3289927 | None:intergenic |
CACCATCTGCTGGATTTGCT+TGG | 0.437939 | 5.2:-3289885 | None:intergenic |
GTTGAATGCTTCACGGTTGA+AGG | 0.443148 | 5.2:+3290991 | MS.gene21642:CDS |
ACCAGAGATCGTTGTTGATA+AGG | 0.446783 | 5.2:+3291985 | MS.gene21642:CDS |
TGCTCAGGAGTATGCTGAAA+AGG | 0.449579 | 5.2:+3291949 | MS.gene21642:CDS |
CTTTCTCTTCGGCTTCTTGG+CGG | 0.452151 | 5.2:-3289916 | None:intergenic |
GGATGAACCGCACCATCTGC+TGG | 0.455942 | 5.2:-3289895 | None:intergenic |
CTATGCAGTTGAATGCTTCA+CGG | 0.456350 | 5.2:+3290984 | MS.gene21642:CDS |
TCATGGGGATTGTGATGGCT+GGG | 0.459295 | 5.2:-3292028 | None:intergenic |
TTACATGTGGGAGTTTGTTA+CGG | 0.463593 | 5.2:-3292421 | None:intergenic |
CGAGAAGTTGCAGTTGGTTG+AGG | 0.469869 | 5.2:+3290120 | MS.gene21642:CDS |
AACATTACCAGTGGAGATCA+TGG | 0.476950 | 5.2:-3292045 | None:intergenic |
ATGGGGATTGTGATGGCTGG+GGG | 0.508306 | 5.2:-3292026 | None:intergenic |
CCTATTGAGGTGTCGGAAAG+AGG | 0.513705 | 5.2:+3291892 | MS.gene21642:CDS |
TTGTTATTCTTCAGCTCTGG+AGG | 0.520387 | 5.2:+3292326 | MS.gene21642:intron |
AGAGGACCTGCACTTGGTAG+AGG | 0.521773 | 5.2:+3291910 | MS.gene21642:CDS |
CAATATCGAGAAGTTGCAGT+TGG | 0.528790 | 5.2:+3290114 | MS.gene21642:CDS |
GCTCACATTCAAGAGTTCCT+TGG | 0.530777 | 5.2:-3291062 | None:intergenic |
CATGGGGATTGTGATGGCTG+GGG | 0.531144 | 5.2:-3292027 | None:intergenic |
CACATTCAAGAGTTCCTTGG+CGG | 0.533307 | 5.2:-3291059 | None:intergenic |
ATTCTTCAGCTCTGGAGGTG+TGG | 0.541669 | 5.2:+3292331 | MS.gene21642:intron |
ACATTACCAGTGGAGATCAT+GGG | 0.551646 | 5.2:-3292044 | None:intergenic |
CTTCTGTCCTATTGAGGTGT+CGG | 0.557410 | 5.2:+3291885 | MS.gene21642:CDS |
AAGAACCTTCTGTCCTATTG+AGG | 0.558216 | 5.2:+3291879 | MS.gene21642:CDS |
AAACTTCCTCTACCAAGTGC+AGG | 0.570638 | 5.2:-3291916 | None:intergenic |
AATGAAAGAGTCTGCCGCCA+AGG | 0.574070 | 5.2:+3291045 | MS.gene21642:CDS |
CGACACCTCAATAGGACAGA+AGG | 0.579267 | 5.2:-3291884 | None:intergenic |
ACAATCCCCATGATCTCCAC+TGG | 0.579484 | 5.2:+3292038 | MS.gene21642:CDS |
TCGGAAAGAGGACCTGCACT+TGG | 0.588677 | 5.2:+3291904 | MS.gene21642:CDS |
AGCGGAAACAGAGATCTCGT+TGG | 0.593299 | 5.2:-3289939 | None:intergenic |
CTCCAAGCAAATCCAGCAGA+TGG | 0.599092 | 5.2:+3289883 | MS.gene21642:CDS |
TCTTCAAGCCCAAGATGATG+TGG | 0.617482 | 5.2:+3291015 | MS.gene21642:CDS |
CATTACCAGTGGAGATCATG+GGG | 0.626749 | 5.2:-3292043 | None:intergenic |
AGCAAATCCAGCAGATGGTG+CGG | 0.627594 | 5.2:+3289888 | MS.gene21642:CDS |
GTGGTATTGGCTTCTCACGA+TGG | 0.629147 | 5.2:+3292350 | MS.gene21642:CDS |
GGAGATCATGGGGATTGTGA+TGG | 0.645556 | 5.2:-3292033 | None:intergenic |
GAAGTGATGTACTTCTTCAG+CGG | 0.656747 | 5.2:-3289957 | None:intergenic |
CTTGTCCAAAGAGCTGCTTG+CGG | 0.716823 | 5.2:-3293562 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAGATATAAATAATAAGAA+AGG | - | chr5.2:3291498-3291517 | None:intergenic | 10.0% |
!! | ATACTAAATTCAAATATATT+CGG | - | chr5.2:3290584-3290603 | None:intergenic | 10.0% |
!! | ATGAAAAAAAAATATGTAAA+AGG | - | chr5.2:3290219-3290238 | None:intergenic | 10.0% |
!!! | ATAGTGTTTTTTTTTTTTTT+TGG | + | chr5.2:3292486-3292505 | MS.gene21642:intron | 10.0% |
!!! | TAGTGTTTTTTTTTTTTTTT+GGG | + | chr5.2:3292487-3292506 | MS.gene21642:intron | 10.0% |
!!! | TTATTTTCTCAAATTATTAT+CGG | - | chr5.2:3291330-3291349 | None:intergenic | 10.0% |
!!! | TTTTAGTAAAAAAAACTATT+TGG | + | chr5.2:3293414-3293433 | MS.gene21642:intron | 10.0% |
!! | AAAAAATTAACAAACAAAAG+AGG | - | chr5.2:3293022-3293041 | None:intergenic | 15.0% |
!! | AAAAATTAACAAACAAAAGA+GGG | - | chr5.2:3293021-3293040 | None:intergenic | 15.0% |
!! | AAAATATAATTGGAAAAATC+AGG | - | chr5.2:3291175-3291194 | None:intergenic | 15.0% |
!! | AAACAAATATCTAACATAAA+TGG | - | chr5.2:3292523-3292542 | None:intergenic | 15.0% |
!! | ATAACAAATAATACAATATC+AGG | - | chr5.2:3292313-3292332 | None:intergenic | 15.0% |
!!! | AAATAACGTAAAATTTTGTT+AGG | - | chr5.2:3291747-3291766 | None:intergenic | 15.0% |
!!! | CATATAGTTTTAGATTTATT+TGG | + | chr5.2:3290348-3290367 | MS.gene21642:intron | 15.0% |
!!! | GTTGTGATATTATATTTTTT+AGG | + | chr5.2:3292210-3292229 | MS.gene21642:intron | 15.0% |
!!! | TTTCCAATTATATTTTCAAT+AGG | + | chr5.2:3291179-3291198 | MS.gene21642:intron | 15.0% |
!! | AAAGTACAAGTTATAATCAA+CGG | - | chr5.2:3292941-3292960 | None:intergenic | 20.0% |
!! | AATTGATCAGAAAACTTATA+TGG | + | chr5.2:3290244-3290263 | MS.gene21642:intron | 20.0% |
!! | ATCCAACTATTATAATTGAA+TGG | - | chr5.2:3290412-3290431 | None:intergenic | 20.0% |
!! | ATTAAAACAATCCATTATAC+CGG | + | chr5.2:3292102-3292121 | MS.gene21642:intron | 20.0% |
!! | CTTTCAATATTTGCAATATA+AGG | + | chr5.2:3292902-3292921 | MS.gene21642:intron | 20.0% |
!! | GAAAAAGTGAAATTAAGAAA+TGG | - | chr5.2:3289991-3290010 | None:intergenic | 20.0% |
!! | GAAACTTGGAATTAAATATA+AGG | + | chr5.2:3291826-3291845 | MS.gene21642:intron | 20.0% |
!! | GACTATTTATTTACATAATC+TGG | + | chr5.2:3293045-3293064 | MS.gene21642:intron | 20.0% |
!! | GATCCTATTGAAAATATAAT+TGG | - | chr5.2:3291185-3291204 | None:intergenic | 20.0% |
!! | GCATATTCTTATAAAATTCT+AGG | - | chr5.2:3291207-3291226 | None:intergenic | 20.0% |
!! | TACTAAAAATCACATTTGAA+GGG | - | chr5.2:3293402-3293421 | None:intergenic | 20.0% |
!! | TATAACAAAAACTTACATGT+GGG | - | chr5.2:3292436-3292455 | None:intergenic | 20.0% |
!! | TCAATTATAATAGTTGGATT+TGG | + | chr5.2:3290413-3290432 | MS.gene21642:intron | 20.0% |
!! | TTAATCAAGAACAGTTATTT+AGG | - | chr5.2:3292087-3292106 | None:intergenic | 20.0% |
!! | TTACTAAAAATCACATTTGA+AGG | - | chr5.2:3293403-3293422 | None:intergenic | 20.0% |
!! | TTATAACAAAAACTTACATG+TGG | - | chr5.2:3292437-3292456 | None:intergenic | 20.0% |
!!! | AAAATTTTGTTAGGTTTCTT+TGG | - | chr5.2:3291738-3291757 | None:intergenic | 20.0% |
!!! | AAATTTTGTTAGGTTTCTTT+GGG | - | chr5.2:3291737-3291756 | None:intergenic | 20.0% |
!!! | CTACTTGGAATATAATTTTA+GGG | + | chr5.2:3291668-3291687 | MS.gene21642:intron | 20.0% |
!!! | GGTCAGTTAAAATTTTAATA+TGG | + | chr5.2:3291132-3291151 | MS.gene21642:intron | 20.0% |
!!! | TAAAACGTAGTTTTTATACT+AGG | + | chr5.2:3293488-3293507 | MS.gene21642:intron | 20.0% |
!!! | TATCGTTGATTAATAGAATT+TGG | + | chr5.2:3290776-3290795 | MS.gene21642:intron | 20.0% |
!!! | TCTACTTGGAATATAATTTT+AGG | + | chr5.2:3291667-3291686 | MS.gene21642:intron | 20.0% |
!!! | TCTTTTTCTAACTTGAAAAA+TGG | + | chr5.2:3290909-3290928 | MS.gene21642:intron | 20.0% |
!!! | TTGTTATTTACATATGTGAA+TGG | + | chr5.2:3290268-3290287 | MS.gene21642:intron | 20.0% |
! | AAACACACTATATAAATACC+GGG | - | chr5.2:3293342-3293361 | None:intergenic | 25.0% |
! | AATAATAAGAAAGGATGAGA+AGG | - | chr5.2:3291489-3291508 | None:intergenic | 25.0% |
! | ACGATCTAATAAACAAAACA+TGG | - | chr5.2:3290056-3290075 | None:intergenic | 25.0% |
! | AGTGAAATTAAGAAATGGAT+CGG | - | chr5.2:3289986-3290005 | None:intergenic | 25.0% |
! | ATTTAATCAGTCATCATACT+TGG | - | chr5.2:3290808-3290827 | None:intergenic | 25.0% |
! | CAAACACACTATATAAATAC+CGG | - | chr5.2:3293343-3293362 | None:intergenic | 25.0% |
! | GGTATTTATATAGTGTGTTT+GGG | + | chr5.2:3293342-3293361 | MS.gene21642:intron | 25.0% |
! | TCAATTGTATAAGATCATCA+AGG | + | chr5.2:3290321-3290340 | MS.gene21642:intron | 25.0% |
! | TGCCATTCAATTATAATAGT+TGG | + | chr5.2:3290407-3290426 | MS.gene21642:intron | 25.0% |
! | TTTAAATGTAACATTACCAG+TGG | - | chr5.2:3292057-3292076 | None:intergenic | 25.0% |
! | TTTAGTGTAATCATATGTGT+TGG | + | chr5.2:3291355-3291374 | MS.gene21642:intron | 25.0% |
! | TTTATTAACCACATCATCTT+GGG | - | chr5.2:3291026-3291045 | None:intergenic | 25.0% |
!! | AATTTTGTTAGGTTTCTTTG+GGG | - | chr5.2:3291736-3291755 | None:intergenic | 25.0% |
!! | ATAGTTAGTTAACAGAGTTT+TGG | - | chr5.2:3292779-3292798 | None:intergenic | 25.0% |
!! | ATGTTTAAGATTTGAAACTC+AGG | - | chr5.2:3292250-3292269 | None:intergenic | 25.0% |
!! | TGTTTAAGATTTGAAACTCA+GGG | - | chr5.2:3292249-3292268 | None:intergenic | 25.0% |
!! | TTTTATTAACCACATCATCT+TGG | - | chr5.2:3291027-3291046 | None:intergenic | 25.0% |
!! | TTTTCTAACTTGAAAAATGG+TGG | + | chr5.2:3290912-3290931 | MS.gene21642:intron | 25.0% |
!!! | ACTGTTTCTATAGTTGATTA+AGG | + | chr5.2:3292281-3292300 | MS.gene21642:intron | 25.0% |
!!! | ATTAAGGTTTTGTGTTGAAT+AGG | + | chr5.2:3292731-3292750 | MS.gene21642:intron | 25.0% |
!!! | CTTAACTTTTTTTTTCCCTT+GGG | + | chr5.2:3292846-3292865 | MS.gene21642:intron | 25.0% |
!!! | TCTTAACTTTTTTTTTCCCT+TGG | + | chr5.2:3292845-3292864 | MS.gene21642:intron | 25.0% |
!!! | TTAAGGTTTTGTGTTGAATA+GGG | + | chr5.2:3292732-3292751 | MS.gene21642:intron | 25.0% |
AAAAGTTAAGAATGAAACGC+AGG | - | chr5.2:3292836-3292855 | None:intergenic | 30.0% | |
AAAATCAGGTAAACAACTAC+AGG | - | chr5.2:3291161-3291180 | None:intergenic | 30.0% | |
AATGAAATACTTGAGAGTTG+AGG | + | chr5.2:3292629-3292648 | MS.gene21642:intron | 30.0% | |
AGGAAAAGACATGGATTTAT+GGG | + | chr5.2:3293232-3293251 | MS.gene21642:intron | 30.0% | |
AGGAATTAGGAACTGTATAA+AGG | + | chr5.2:3292690-3292709 | MS.gene21642:intron | 30.0% | |
ATAAATTAGCTGCATTGTAC+AGG | - | chr5.2:3293263-3293282 | None:intergenic | 30.0% | |
ATCAATTTCTGCATATGTGA+TGG | + | chr5.2:3293173-3293192 | MS.gene21642:intron | 30.0% | |
CGGTATTTATATAGTGTGTT+TGG | + | chr5.2:3293341-3293360 | MS.gene21642:intron | 30.0% | |
CTTACACAAATACTAAAACC+CGG | + | chr5.2:3293321-3293340 | MS.gene21642:intron | 30.0% | |
GAATTAGGAACTGTATAAAG+GGG | + | chr5.2:3292692-3292711 | MS.gene21642:intron | 30.0% | |
GATCCAACTATTGTAATTGA+AGG | - | chr5.2:3290560-3290579 | None:intergenic | 30.0% | |
GGAATTAGGAACTGTATAAA+GGG | + | chr5.2:3292691-3292710 | MS.gene21642:intron | 30.0% | |
TAAATTAGCTGCATTGTACA+GGG | - | chr5.2:3293262-3293281 | None:intergenic | 30.0% | |
TAATATTGAGAAATGAAGCG+CGG | - | chr5.2:3292878-3292897 | None:intergenic | 30.0% | |
TAGGAAAAGACATGGATTTA+TGG | + | chr5.2:3293231-3293250 | MS.gene21642:intron | 30.0% | |
TATGACTTCTAATCAAACCA+AGG | - | chr5.2:3293470-3293489 | None:intergenic | 30.0% | |
TATTCCAAGTAGACTTAAGA+AGG | - | chr5.2:3291660-3291679 | None:intergenic | 30.0% | |
TCTAAAAGATCTCGTTATTC+AGG | + | chr5.2:3291111-3291130 | MS.gene21642:CDS | 30.0% | |
TGTCCTTCAATTACAATAGT+TGG | + | chr5.2:3290554-3290573 | MS.gene21642:intron | 30.0% | |
TTAACAAACAAAAGAGGGAA+AGG | - | chr5.2:3293016-3293035 | None:intergenic | 30.0% | |
TTACTTTGTGTATGGAAACT+TGG | + | chr5.2:3291812-3291831 | MS.gene21642:intron | 30.0% | |
TTTGTGTTGAATAGGGTAAA+GGG | + | chr5.2:3292739-3292758 | MS.gene21642:intron | 30.0% | |
! | ATAAATTTTCCTCCAAACCT+TGG | + | chr5.2:3293450-3293469 | MS.gene21642:intron | 30.0% |
! | ATTTTGTTAGGTTTCTTTGG+GGG | - | chr5.2:3291735-3291754 | None:intergenic | 30.0% |
! | GAATAACGAGATCTTTTAGA+AGG | - | chr5.2:3291111-3291130 | None:intergenic | 30.0% |
! | GATCTTTTCTCATAGATCAT+TGG | + | chr5.2:3290719-3290738 | MS.gene21642:intron | 30.0% |
! | TACAATTGGTAGCAATTGAT+TGG | + | chr5.2:3290634-3290653 | MS.gene21642:intron | 30.0% |
! | TCTAGATGATTTTTGATCGT+CGG | + | chr5.2:3293131-3293150 | MS.gene21642:intron | 30.0% |
! | TTTTGTACACATGATGATCA+CGG | - | chr5.2:3291087-3291106 | None:intergenic | 30.0% |
! | TTTTGTGTTGAATAGGGTAA+AGG | + | chr5.2:3292738-3292757 | MS.gene21642:intron | 30.0% |
!! | TATTTGTTATTCTTCAGCTC+TGG | + | chr5.2:3292323-3292342 | MS.gene21642:intron | 30.0% |
!!! | GTATTTTACAGAGTTTGTTG+AGG | + | chr5.2:3291852-3291871 | MS.gene21642:intron | 30.0% |
AAATACACTTGATGCTCGTT+TGG | + | chr5.2:3292388-3292407 | MS.gene21642:CDS | 35.0% | |
AATATTGAGAAATGAAGCGC+GGG | - | chr5.2:3292877-3292896 | None:intergenic | 35.0% | |
ACTGATGTGTCTAATGTCAT+GGG | + | chr5.2:3291584-3291603 | MS.gene21642:intron | 35.0% | |
ATCCATTATACCGGATTTCT+AGG | + | chr5.2:3292111-3292130 | MS.gene21642:intron | 35.0% | |
CAACGATATGTGATTAGTAC+TGG | - | chr5.2:3290764-3290783 | None:intergenic | 35.0% | |
CATCCAAAACGAGTTTACTT+TGG | - | chr5.2:3290507-3290526 | None:intergenic | 35.0% | |
CTTCTAATCAAACCAAGGTT+TGG | - | chr5.2:3293465-3293484 | None:intergenic | 35.0% | |
GCAATCTATTCTGTAATCGA+AGG | - | chr5.2:3291241-3291260 | None:intergenic | 35.0% | |
GGAAAAGACATGGATTTATG+GGG | + | chr5.2:3293233-3293252 | MS.gene21642:intron | 35.0% | |
TACCTAGAAATCCGGTATAA+TGG | - | chr5.2:3292116-3292135 | None:intergenic | 35.0% | |
TCGATTACAGAATAGATTGC+AGG | + | chr5.2:3291241-3291260 | MS.gene21642:intron | 35.0% | |
TGAGAGTTTAGGAAAAGACA+TGG | + | chr5.2:3293223-3293242 | MS.gene21642:intron | 35.0% | |
! | ATTATACCGGATTTCTAGGT+AGG | + | chr5.2:3292115-3292134 | MS.gene21642:intron | 35.0% |
! | CATCCAAAGTAAACTCGTTT+TGG | + | chr5.2:3290501-3290520 | MS.gene21642:intron | 35.0% |
! | CATGCACTTCGAATATTTTC+AGG | - | chr5.2:3293297-3293316 | None:intergenic | 35.0% |
! | TTATACCGGATTTCTAGGTA+GGG | + | chr5.2:3292116-3292135 | MS.gene21642:intron | 35.0% |
!! | GAATTACGCTGTTTTGTTGT+AGG | + | chr5.2:3290087-3290106 | MS.gene21642:intron | 35.0% |
!! | TGTGCTACTTACTTTGTGTA+TGG | + | chr5.2:3291804-3291823 | MS.gene21642:intron | 35.0% |
!! | TTACATGTGGGAGTTTGTTA+CGG | - | chr5.2:3292424-3292443 | None:intergenic | 35.0% |
AACATTACCAGTGGAGATCA+TGG | - | chr5.2:3292048-3292067 | None:intergenic | 40.0% | |
AACTGTATAAAGGGGCAGAA+CGG | + | chr5.2:3292700-3292719 | MS.gene21642:intron | 40.0% | |
AAGAACCTTCTGTCCTATTG+AGG | + | chr5.2:3291879-3291898 | MS.gene21642:CDS | 40.0% | |
AAGGCCTTCTTAAGTCTACT+TGG | + | chr5.2:3291653-3291672 | MS.gene21642:intron | 40.0% | |
ACAAAAGAGGGAAAGGAAGT+TGG | - | chr5.2:3293009-3293028 | None:intergenic | 40.0% | |
ACATTACCAGTGGAGATCAT+GGG | - | chr5.2:3292047-3292066 | None:intergenic | 40.0% | |
ACCAGAGATCGTTGTTGATA+AGG | + | chr5.2:3291985-3292004 | MS.gene21642:CDS | 40.0% | |
ACCATTGGTGTGTCAGTTAA+GGG | - | chr5.2:3291543-3291562 | None:intergenic | 40.0% | |
AGGTCAATTATGCACTGTGA+GGG | + | chr5.2:3292649-3292668 | MS.gene21642:intron | 40.0% | |
CAAAAGAGGGAAAGGAAGTT+GGG | - | chr5.2:3293008-3293027 | None:intergenic | 40.0% | |
CAATATCGAGAAGTTGCAGT+TGG | + | chr5.2:3290114-3290133 | MS.gene21642:CDS | 40.0% | |
CAATTCCCTACCTAGAAATC+CGG | - | chr5.2:3292124-3292143 | None:intergenic | 40.0% | |
CACAGTCTCACAGATACAAT+TGG | + | chr5.2:3290620-3290639 | MS.gene21642:intron | 40.0% | |
CACTGATGTGTCTAATGTCA+TGG | + | chr5.2:3291583-3291602 | MS.gene21642:intron | 40.0% | |
CATGACATTAGACACATCAG+TGG | - | chr5.2:3291585-3291604 | None:intergenic | 40.0% | |
CCTTGTTGACCAGTAAAAAG+GGG | - | chr5.2:3291637-3291656 | None:intergenic | 40.0% | |
CTAATCAAACCAAGGTTTGG+AGG | - | chr5.2:3293462-3293481 | None:intergenic | 40.0% | |
CTATGCAGTTGAATGCTTCA+CGG | + | chr5.2:3290984-3291003 | MS.gene21642:CDS | 40.0% | |
GAAGTGATGTACTTCTTCAG+CGG | - | chr5.2:3289960-3289979 | None:intergenic | 40.0% | |
GCTTCTTGAAGCAATACCAT+TGG | - | chr5.2:3291558-3291577 | None:intergenic | 40.0% | |
GGCTGTGGTATTTAGGTATA+GGG | + | chr5.2:3291276-3291295 | MS.gene21642:intron | 40.0% | |
GTTAAGGGGTTTGTAGTTAG+TGG | - | chr5.2:3291528-3291547 | None:intergenic | 40.0% | |
TACCATTGGTGTGTCAGTTA+AGG | - | chr5.2:3291544-3291563 | None:intergenic | 40.0% | |
TCCTTATCAACAACGATCTC+TGG | - | chr5.2:3291989-3292008 | None:intergenic | 40.0% | |
TTGGGCATGTAACAGGAATT+AGG | + | chr5.2:3292677-3292696 | MS.gene21642:intron | 40.0% | |
! | ACTGTCTTGTCGTTTGAGAA+AGG | - | chr5.2:3291464-3291483 | None:intergenic | 40.0% |
! | AGATTGCAGGACTTTGAGAA+AGG | + | chr5.2:3291254-3291273 | MS.gene21642:intron | 40.0% |
! | CAGAACGGACTTAAGGATTA+AGG | + | chr5.2:3292715-3292734 | MS.gene21642:intron | 40.0% |
! | CGATATGTGATTAGTACTGG+CGG | - | chr5.2:3290761-3290780 | None:intergenic | 40.0% |
! | CTGTCTTGTCGTTTGAGAAA+GGG | - | chr5.2:3291463-3291482 | None:intergenic | 40.0% |
! | GATTGCAGGACTTTGAGAAA+GGG | + | chr5.2:3291255-3291274 | MS.gene21642:intron | 40.0% |
! | GCCTTGTTGACCAGTAAAAA+GGG | - | chr5.2:3291638-3291657 | None:intergenic | 40.0% |
! | TGTGTTTGGGTTCACAATAG+AGG | + | chr5.2:3293355-3293374 | MS.gene21642:intron | 40.0% |
! | TTGTTATTCTTCAGCTCTGG+AGG | + | chr5.2:3292326-3292345 | MS.gene21642:intron | 40.0% |
!! | GATATGTGATTAGTACTGGC+GGG | - | chr5.2:3290760-3290779 | None:intergenic | 40.0% |
!! | TGTCTAGCTCTGTTAGTCAA+GGG | + | chr5.2:3292153-3292172 | MS.gene21642:intron | 40.0% |
AAACTTCCTCTACCAAGTGC+AGG | - | chr5.2:3291919-3291938 | None:intergenic | 45.0% | |
AGGTATAGGGCTATGAAGCA+CGG | + | chr5.2:3291289-3291308 | MS.gene21642:intron | 45.0% | |
ATGCATTGTGCAAGTGGTTC+GGG | + | chr5.2:3293196-3293215 | MS.gene21642:intron | 45.0% | |
CACATTCAAGAGTTCCTTGG+CGG | - | chr5.2:3291062-3291081 | None:intergenic | 45.0% | |
CATTACCAGTGGAGATCATG+GGG | - | chr5.2:3292046-3292065 | None:intergenic | 45.0% | |
CCATTGGTGTGTCAGTTAAG+GGG | - | chr5.2:3291542-3291561 | None:intergenic | 45.0% | |
CTTCTGTCCTATTGAGGTGT+CGG | + | chr5.2:3291885-3291904 | MS.gene21642:CDS | 45.0% | |
CTTTGCGCTCATACTCTTGA+CGG | - | chr5.2:3290162-3290181 | None:intergenic | 45.0% | |
GAAGTTGGGCAGTAATGCTA+AGG | - | chr5.2:3292994-3293013 | None:intergenic | 45.0% | |
GAGAAAGGGCTGTGGTATTT+AGG | + | chr5.2:3291269-3291288 | MS.gene21642:intron | 45.0% | |
GAGGTCAATTATGCACTGTG+AGG | + | chr5.2:3292648-3292667 | MS.gene21642:intron | 45.0% | |
GATGCATTGTGCAAGTGGTT+CGG | + | chr5.2:3293195-3293214 | MS.gene21642:intron | 45.0% | |
GCTAGAAGCAATCTGAGCAA+TGG | - | chr5.2:3292805-3292824 | None:intergenic | 45.0% | |
GCTCACATTCAAGAGTTCCT+TGG | - | chr5.2:3291065-3291084 | None:intergenic | 45.0% | |
GGAAGAGAAGCAGGATGATA+GGG | - | chr5.2:3291616-3291635 | None:intergenic | 45.0% | |
GGGCTGTGGTATTTAGGTAT+AGG | + | chr5.2:3291275-3291294 | MS.gene21642:intron | 45.0% | |
GTAAAAAGGGGAAGAGAAGC+AGG | - | chr5.2:3291625-3291644 | None:intergenic | 45.0% | |
GTTGAATGCTTCACGGTTGA+AGG | + | chr5.2:3290991-3291010 | MS.gene21642:CDS | 45.0% | |
TCTCTCGGGTCTAACTTGAT+TGG | + | chr5.2:3292188-3292207 | MS.gene21642:intron | 45.0% | |
TCTTCAAGCCCAAGATGATG+TGG | + | chr5.2:3291015-3291034 | MS.gene21642:CDS | 45.0% | |
TGAGAAAGGGCTGTGGTATA+GGG | - | chr5.2:3291450-3291469 | None:intergenic | 45.0% | |
TGGTATAGGGCTATGAAGCA+CGG | - | chr5.2:3291437-3291456 | None:intergenic | 45.0% | |
TTGAGAAAGGGCTGTGGTAT+AGG | - | chr5.2:3291286-3291267 | None:intergenic | 45.0% | |
TTGGGCAGTAATGCTAAGGT+GGG | - | chr5.2:3292990-3293009 | None:intergenic | 45.0% | |
! | CCCCTTTTTACTGGTCAACA+AGG | + | chr5.2:3291634-3291653 | MS.gene21642:intron | 45.0% |
! | GCACTTGGTAGAGGAAGTTT+TGG | + | chr5.2:3291919-3291938 | MS.gene21642:CDS | 45.0% |
! | GCTTCTCTTCCCCTTTTTAC+TGG | + | chr5.2:3291625-3291644 | MS.gene21642:intron | 45.0% |
! | GTTAGGTTTCTTTGGGGGAA+GGG | - | chr5.2:3291730-3291749 | None:intergenic | 45.0% |
! | TGATGGATGCATTGTGCAAG+TGG | + | chr5.2:3293190-3293209 | MS.gene21642:intron | 45.0% |
! | TGCTCAGGAGTATGCTGAAA+AGG | + | chr5.2:3291949-3291968 | MS.gene21642:CDS | 45.0% |
! | TGTTAGGTTTCTTTGGGGGA+AGG | - | chr5.2:3291731-3291750 | None:intergenic | 45.0% |
! | TTAGGTTTCTTTGGGGGAAG+GGG | - | chr5.2:3291729-3291748 | None:intergenic | 45.0% |
!! | AGGTGGGGGAGTATCTATTT+AGG | - | chr5.2:3292974-3292993 | None:intergenic | 45.0% |
!! | CGACAGATGACGCTCTAAAA+AGG | - | chr5.2:3293073-3293092 | None:intergenic | 45.0% |
!! | GATCTCGTTGGCTTTCTCTT+CGG | - | chr5.2:3289930-3289949 | None:intergenic | 45.0% |
!! | GGCCTTGTTGACCAGTAAAA+AGG | - | chr5.2:3291639-3291658 | None:intergenic | 45.0% |
!! | GGGGGAGTATCTATTTAGGA+AGG | - | chr5.2:3292970-3292989 | None:intergenic | 45.0% |
!! | GTGTCTAGCTCTGTTAGTCA+AGG | + | chr5.2:3292152-3292171 | MS.gene21642:intron | 45.0% |
!!! | AGTTTTGGATTCAGCTGCTC+AGG | + | chr5.2:3291934-3291953 | MS.gene21642:CDS | 45.0% |
!!! | TTTTAGAGCGTCATCTGTCG+CGG | + | chr5.2:3293073-3293092 | MS.gene21642:intron | 45.0% |
AATGAAAGAGTCTGCCGCCA+AGG | + | chr5.2:3291045-3291064 | MS.gene21642:CDS | 50.0% | |
ACAATCCCCATGATCTCCAC+TGG | + | chr5.2:3292038-3292057 | MS.gene21642:CDS | 50.0% | |
AGCAAATCCAGCAGATGGTG+CGG | + | chr5.2:3289888-3289907 | MS.gene21642:CDS | 50.0% | |
AGCGGAAACAGAGATCTCGT+TGG | - | chr5.2:3289942-3289961 | None:intergenic | 50.0% | |
ATCATGGGGATTGTGATGGC+TGG | - | chr5.2:3292032-3292051 | None:intergenic | 50.0% | |
ATGCACTGTGAGGGACAACT+TGG | + | chr5.2:3292658-3292677 | MS.gene21642:intron | 50.0% | |
CCCCTTAACTGACACACCAA+TGG | + | chr5.2:3291539-3291558 | MS.gene21642:intron | 50.0% | |
CCTCTTTCCGACACCTCAAT+AGG | - | chr5.2:3291895-3291914 | None:intergenic | 50.0% | |
CGACACCTCAATAGGACAGA+AGG | - | chr5.2:3291887-3291906 | None:intergenic | 50.0% | |
CGAGAAGTTGCAGTTGGTTG+AGG | + | chr5.2:3290120-3290139 | MS.gene21642:CDS | 50.0% | |
CTCCAAGCAAATCCAGCAGA+TGG | + | chr5.2:3289883-3289902 | MS.gene21642:CDS | 50.0% | |
CTTGTCCAAAGAGCTGCTTG+CGG | - | chr5.2:3293565-3293584 | None:intergenic | 50.0% | |
CTTTCTCTTCGGCTTCTTGG+CGG | - | chr5.2:3289919-3289938 | None:intergenic | 50.0% | |
GCTCAGATTGCTTCTAGCAC+TGG | + | chr5.2:3292807-3292826 | MS.gene21642:intron | 50.0% | |
GGACAACTTGGGCATGTAAC+AGG | + | chr5.2:3292670-3292689 | MS.gene21642:intron | 50.0% | |
GGAGATCATGGGGATTGTGA+TGG | - | chr5.2:3292036-3292055 | None:intergenic | 50.0% | |
GGGAAGAGAAGCAGGATGAT+AGG | - | chr5.2:3291617-3291636 | None:intergenic | 50.0% | |
GGTATAGGGCTATGAAGCAC+GGG | + | chr5.2:3291290-3291309 | MS.gene21642:intron | 50.0% | |
GTTGGGCAGTAATGCTAAGG+TGG | - | chr5.2:3292991-3293010 | None:intergenic | 50.0% | |
TATGAAGCACGGACACTCCT+CGG | - | chr5.2:3291426-3291445 | None:intergenic | 50.0% | |
TCATGGGGATTGTGATGGCT+GGG | - | chr5.2:3292031-3292050 | None:intergenic | 50.0% | |
TGCACTGTGAGGGACAACTT+GGG | + | chr5.2:3292659-3292678 | MS.gene21642:intron | 50.0% | |
TGGCTTTCTCTTCGGCTTCT+TGG | - | chr5.2:3289922-3289941 | None:intergenic | 50.0% | |
TGGGCAGTAATGCTAAGGTG+GGG | - | chr5.2:3292989-3293008 | None:intergenic | 50.0% | |
! | AAAGGGGCAGAACGGACTTA+AGG | + | chr5.2:3292708-3292727 | MS.gene21642:intron | 50.0% |
! | AGGACTTTGAGAAAGGGCTG+TGG | + | chr5.2:3291261-3291280 | MS.gene21642:intron | 50.0% |
! | ATTGTGCAAGTGGTTCGGGT+GGG | + | chr5.2:3293200-3293219 | MS.gene21642:intron | 50.0% |
! | CACCATCTGCTGGATTTGCT+TGG | - | chr5.2:3289888-3289907 | None:intergenic | 50.0% |
! | TAGGTTTCTTTGGGGGAAGG+GGG | - | chr5.2:3291728-3291747 | None:intergenic | 50.0% |
! | TGTCGTTTGAGAAAGGGCTG+TGG | - | chr5.2:3291457-3291476 | None:intergenic | 50.0% |
!! | ATTCTTCAGCTCTGGAGGTG+TGG | + | chr5.2:3292331-3292350 | MS.gene21642:intron | 50.0% |
!! | CCTATTGAGGTGTCGGAAAG+AGG | + | chr5.2:3291892-3291911 | MS.gene21642:CDS | 50.0% |
!! | GGCTTGCATCTAGTTCTCTC+GGG | + | chr5.2:3292174-3292193 | MS.gene21642:intron | 50.0% |
!! | GGGCTTGCATCTAGTTCTCT+CGG | + | chr5.2:3292173-3292192 | MS.gene21642:intron | 50.0% |
!! | GTGGTATTGGCTTCTCACGA+TGG | + | chr5.2:3292350-3292369 | MS.gene21642:CDS | 50.0% |
AGAGGACCTGCACTTGGTAG+AGG | + | chr5.2:3291910-3291929 | MS.gene21642:CDS | 55.0% | |
ATGGGGATTGTGATGGCTGG+GGG | - | chr5.2:3292029-3292048 | None:intergenic | 55.0% | |
CAGATCCGCAAGCAGCTCTT+TGG | + | chr5.2:3293557-3293576 | MS.gene21642:intron | 55.0% | |
CATGGGGATTGTGATGGCTG+GGG | - | chr5.2:3292030-3292049 | None:intergenic | 55.0% | |
GGGCAGTAATGCTAAGGTGG+GGG | - | chr5.2:3292988-3293007 | None:intergenic | 55.0% | |
GTTCGGGTGGGTGAGAGTTT+AGG | + | chr5.2:3293212-3293231 | MS.gene21642:intron | 55.0% | |
TCGGAAAGAGGACCTGCACT+TGG | + | chr5.2:3291904-3291923 | MS.gene21642:CDS | 55.0% | |
! | AGGTTTCTTTGGGGGAAGGG+GGG | - | chr5.2:3291727-3291746 | None:intergenic | 55.0% |
! | CATTGTGCAAGTGGTTCGGG+TGG | + | chr5.2:3293199-3293218 | MS.gene21642:intron | 55.0% |
! | TCGGATTAGGTGGTGTGTCC+CGG | - | chr5.2:3291407-3291426 | None:intergenic | 55.0% |
!! | CAGCTCTGGAGGTGTGGTAT+TGG | + | chr5.2:3292337-3292356 | MS.gene21642:intron | 55.0% |
GAAGCGCGGGTACTACCCAA+GGG | - | chr5.2:3292864-3292883 | None:intergenic | 60.0% | |
GCACGGACACTCCTCGGATT+AGG | - | chr5.2:3291420-3291439 | None:intergenic | 60.0% | |
GGATGAACCGCACCATCTGC+TGG | - | chr5.2:3289898-3289917 | None:intergenic | 60.0% | |
GGGACACACCACCTAATCCG+AGG | + | chr5.2:3291406-3291425 | MS.gene21642:intron | 60.0% | |
TGAAGCGCGGGTACTACCCA+AGG | - | chr5.2:3292865-3292884 | None:intergenic | 60.0% | |
! | CGGACACTCCTCGGATTAGG+TGG | - | chr5.2:3291417-3291436 | None:intergenic | 60.0% |
! | TAGAGCGTCATCTGTCGCGG+TGG | + | chr5.2:3293076-3293095 | MS.gene21642:intron | 60.0% |
! | TTTCTTTGGGGGAAGGGGGG+TGG | - | chr5.2:3291724-3291743 | None:intergenic | 60.0% |
ACCGACGCGTGTCTGACACC+GGG | + | chr5.2:3291386-3291405 | MS.gene21642:intron | 65.0% | |
CACCGACGCGTGTCTGACAC+CGG | + | chr5.2:3291385-3291404 | MS.gene21642:intron | 65.0% | |
GGATTGTGATGGCTGGGGGC+AGG | - | chr5.2:3292025-3292044 | None:intergenic | 65.0% | |
TTGTGATGGCTGGGGGCAGG+TGG | - | chr5.2:3292022-3292041 | None:intergenic | 65.0% | |
! | TCCCGGTGTCAGACACGCGT+CGG | - | chr5.2:3291390-3291409 | None:intergenic | 65.0% |
!! | AGGGGGGTGGACTGTGGAGG+CGG | - | chr5.2:3291711-3291730 | None:intergenic | 70.0% |
!! | GGAAGGGGGGTGGACTGTGG+AGG | - | chr5.2:3291714-3291733 | None:intergenic | 70.0% |
!! | GGGGGAAGGGGGGTGGACTG+TGG | - | chr5.2:3291717-3291736 | None:intergenic | 75.0% |
!! | GGGGGGTGGACTGTGGAGGC+GGG | - | chr5.2:3291710-3291729 | None:intergenic | 75.0% |
!! | GGGGGTGGACTGTGGAGGCG+GGG | - | chr5.2:3291709-3291728 | None:intergenic | 75.0% |
!! | GGGGTGGACTGTGGAGGCGG+GGG | - | chr5.2:3291708-3291727 | None:intergenic | 75.0% |
!! | GGGTGGACTGTGGAGGCGGG+GGG | - | chr5.2:3291707-3291726 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 3289866 | 3293595 | 3289866 | ID=MS.gene21642 |
chr5.2 | mRNA | 3289866 | 3293595 | 3289866 | ID=MS.gene21642.t1;Parent=MS.gene21642 |
chr5.2 | exon | 3289866 | 3289967 | 3289866 | ID=MS.gene21642.t1.exon1;Parent=MS.gene21642.t1 |
chr5.2 | CDS | 3289866 | 3289967 | 3289866 | ID=cds.MS.gene21642.t1;Parent=MS.gene21642.t1 |
chr5.2 | exon | 3290109 | 3290209 | 3290109 | ID=MS.gene21642.t1.exon2;Parent=MS.gene21642.t1 |
chr5.2 | CDS | 3290109 | 3290209 | 3290109 | ID=cds.MS.gene21642.t1;Parent=MS.gene21642.t1 |
chr5.2 | exon | 3290976 | 3291132 | 3290976 | ID=MS.gene21642.t1.exon3;Parent=MS.gene21642.t1 |
chr5.2 | CDS | 3290976 | 3291132 | 3290976 | ID=cds.MS.gene21642.t1;Parent=MS.gene21642.t1 |
chr5.2 | exon | 3291863 | 3292059 | 3291863 | ID=MS.gene21642.t1.exon4;Parent=MS.gene21642.t1 |
chr5.2 | CDS | 3291863 | 3292059 | 3291863 | ID=cds.MS.gene21642.t1;Parent=MS.gene21642.t1 |
chr5.2 | exon | 3292340 | 3292439 | 3292340 | ID=MS.gene21642.t1.exon5;Parent=MS.gene21642.t1 |
chr5.2 | CDS | 3292340 | 3292439 | 3292340 | ID=cds.MS.gene21642.t1;Parent=MS.gene21642.t1 |
chr5.2 | exon | 3293560 | 3293595 | 3293560 | ID=MS.gene21642.t1.exon6;Parent=MS.gene21642.t1 |
chr5.2 | CDS | 3293560 | 3293595 | 3293560 | ID=cds.MS.gene21642.t1;Parent=MS.gene21642.t1 |
Gene Sequence |
Protein sequence |