Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55771.t1 | XP_013447151.1 | 96.7 | 239 | 8 | 0 | 1 | 239 | 1 | 239 | 4.50E-120 | 440.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55771.t1 | Q9SWE7 | 77.0 | 239 | 45 | 1 | 1 | 239 | 1 | 229 | 1.5e-92 | 340.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55771.t1 | A0A072TWB9 | 96.7 | 239 | 8 | 0 | 1 | 239 | 1 | 239 | 3.2e-120 | 440.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene55771 | -0.809816 | 1.57E-50 | -1.69E-46 |
| MS.gene050553 | MS.gene55771 | -0.805314 | 1.42E-49 | -1.69E-46 |
| MS.gene050904 | MS.gene55771 | -0.808395 | 3.16E-50 | -1.69E-46 |
| MS.gene052494 | MS.gene55771 | 0.827925 | 1.19E-54 | -1.69E-46 |
| MS.gene052962 | MS.gene55771 | 0.80709 | 5.99E-50 | -1.69E-46 |
| MS.gene053097 | MS.gene55771 | 0.817213 | 3.71E-52 | -1.69E-46 |
| MS.gene053108 | MS.gene55771 | 0.813309 | 2.73E-51 | -1.69E-46 |
| MS.gene054851 | MS.gene55771 | 0.814294 | 1.66E-51 | -1.69E-46 |
| MS.gene055616 | MS.gene55771 | 0.823125 | 1.64E-53 | -1.69E-46 |
| MS.gene056618 | MS.gene55771 | 0.800911 | 1.15E-48 | -1.69E-46 |
| MS.gene057367 | MS.gene55771 | 0.810245 | 1.27E-50 | -1.69E-46 |
| MS.gene05960 | MS.gene55771 | 0.818911 | 1.53E-52 | -1.69E-46 |
| MS.gene05995 | MS.gene55771 | -0.847809 | 9.14E-60 | -1.69E-46 |
| MS.gene05996 | MS.gene55771 | -0.870861 | 1.06E-66 | -1.69E-46 |
| MS.gene06000 | MS.gene55771 | -0.805466 | 1.32E-49 | -1.69E-46 |
| MS.gene06042 | MS.gene55771 | 0.896627 | 3.08E-76 | -1.69E-46 |
| MS.gene06080 | MS.gene55771 | 0.834258 | 3.33E-56 | -1.69E-46 |
| MS.gene061044 | MS.gene55771 | 0.811308 | 7.47E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55771 | MS.gene87386 | PPI |
| MS.gene55771 | MS.gene06042 | PPI |
| MS.gene55771 | MS.gene91075 | PPI |
| MS.gene072752 | MS.gene55771 | PPI |
| MS.gene55771 | MS.gene011917 | PPI |
| MS.gene55771 | MS.gene90980 | PPI |
| MS.gene55771 | MS.gene072752 | PPI |
| MS.gene55771 | MS.gene21642 | PPI |
| MS.gene55771 | MS.gene003523 | PPI |
| MS.gene55771 | MS.gene52076 | PPI |
| MS.gene55771 | MS.gene28505 | PPI |
| MS.gene55771 | MS.gene057707 | PPI |
| MS.gene048900 | MS.gene55771 | PPI |
| MS.gene91075 | MS.gene55771 | PPI |
| MS.gene024661 | MS.gene55771 | PPI |
| MS.gene55771 | MS.gene44998 | PPI |
| MS.gene90980 | MS.gene55771 | PPI |
| MS.gene55771 | MS.gene22330 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55771.t1 | MTR_8g099190 | 96.653 | 239 | 8 | 0 | 1 | 239 | 1 | 239 | 7.33e-170 | 468 |
| MS.gene55771.t1 | MTR_8g099190 | 92.032 | 251 | 8 | 1 | 1 | 239 | 1 | 251 | 7.42e-166 | 458 |
| MS.gene55771.t1 | MTR_8g099190 | 90.795 | 239 | 7 | 1 | 1 | 239 | 1 | 224 | 3.95e-155 | 430 |
| MS.gene55771.t1 | MTR_8g099190 | 95.918 | 196 | 8 | 0 | 1 | 196 | 1 | 196 | 1.53e-135 | 380 |
| MS.gene55771.t1 | MTR_5g009720 | 79.167 | 240 | 40 | 1 | 1 | 240 | 1 | 230 | 3.97e-135 | 379 |
| MS.gene55771.t1 | MTR_4g073800 | 69.264 | 231 | 59 | 2 | 1 | 229 | 1 | 221 | 1.83e-110 | 318 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55771.t1 | AT4G11150 | 73.418 | 237 | 53 | 1 | 1 | 237 | 1 | 227 | 4.36e-123 | 349 |
| MS.gene55771.t1 | AT1G64200 | 71.548 | 239 | 64 | 1 | 1 | 239 | 1 | 235 | 5.67e-121 | 344 |
| MS.gene55771.t1 | AT1G64200 | 71.429 | 231 | 62 | 1 | 1 | 231 | 1 | 227 | 2.28e-116 | 332 |
| MS.gene55771.t1 | AT3G08560 | 63.866 | 238 | 74 | 2 | 1 | 236 | 1 | 228 | 1.80e-102 | 297 |
| MS.gene55771.t1 | AT1G64200 | 70.312 | 192 | 53 | 1 | 1 | 192 | 1 | 188 | 2.43e-91 | 267 |
Find 38 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAAAAGATCTCATTGTTC+AGG | 0.350211 | 4.3:+4912220 | MS.gene55771:CDS |
| CAGATCCGAAAGCAGCTCTT+TGG | 0.391740 | 4.3:+4914628 | MS.gene55771:intron |
| TTCGTGAGTGTTGTGATGCT+TGG | 0.393565 | 4.3:-4912882 | None:intergenic |
| CAGCTCTGGTGGGGTGGTGT+TGG | 0.395029 | 4.3:+4913314 | MS.gene55771:intron |
| CAATGCAGCTGAATGCTTCT+CGG | 0.400725 | 4.3:+4912063 | MS.gene55771:CDS |
| GGCGGATAAATCTCACCATC+TGG | 0.473875 | 4.3:-4911090 | None:intergenic |
| TCGTGAGTGTTGTGATGCTT+GGG | 0.478089 | 4.3:-4912881 | None:intergenic |
| GCTCACATTCAAAAGTTCCT+TGG | 0.486133 | 4.3:-4912141 | None:intergenic |
| GTGTTGTGATGCTTGGGTGC+AGG | 0.495348 | 4.3:-4912875 | None:intergenic |
| CTTGTCCAAAGAGCTGCTTT+CGG | 0.496240 | 4.3:-4914633 | None:intergenic |
| GTGGTGTTGGCTTCTCGTGA+TGG | 0.512785 | 4.3:+4913327 | MS.gene55771:CDS |
| AATGAAAGAAGTTGCAGCCA+AGG | 0.517165 | 4.3:+4912124 | MS.gene55771:CDS |
| AAATACTCTTGATGCACGGC+TGG | 0.517377 | 4.3:+4913365 | MS.gene55771:CDS |
| CAATATCGAGAAGCTTCAGT+TGG | 0.524663 | 4.3:+4911284 | MS.gene55771:CDS |
| TGGAAAATTCAGCTCTGGTG+GGG | 0.526027 | 4.3:+4913305 | MS.gene55771:intron |
| ACAACACTCACGAACCCTAC+TGG | 0.526388 | 4.3:+4912891 | MS.gene55771:CDS |
| CTTCTGTCTTGTTGAGATGT+CGG | 0.530658 | 4.3:+4912738 | MS.gene55771:CDS |
| TGTGGAAAATTCAGCTCTGG+TGG | 0.539041 | 4.3:+4913303 | MS.gene55771:intron |
| TTGTGGTCAACAATGATCTC+TGG | 0.546406 | 4.3:-4912839 | None:intergenic |
| TGTGCTGGATGCAGCTGCAC+AGG | 0.546828 | 4.3:+4912787 | MS.gene55771:CDS |
| GAACATGAACTTTACCAGTA+GGG | 0.549069 | 4.3:-4912905 | None:intergenic |
| AAAATTCAGCTCTGGTGGGG+TGG | 0.550856 | 4.3:+4913308 | MS.gene55771:intron |
| TATCTTCAACACGGTGATGA+CGG | 0.556951 | 4.3:-4912163 | None:intergenic |
| GATCTCTCTCTCTGCTGAAG+AGG | 0.568633 | 4.3:+4911138 | MS.gene55771:CDS |
| TCGGAAACATGACGTGCACT+TGG | 0.572529 | 4.3:+4912757 | MS.gene55771:CDS |
| TTGTGATGCTTGGGTGCAGG+TGG | 0.576383 | 4.3:-4912872 | None:intergenic |
| CGACATCTCAACAAGACAGA+AGG | 0.583156 | 4.3:-4912737 | None:intergenic |
| GTGGAAAATTCAGCTCTGGT+GGG | 0.597030 | 4.3:+4913304 | MS.gene55771:intron |
| GCACTTGGTAGAACATGTGC+TGG | 0.602448 | 4.3:+4912772 | MS.gene55771:CDS |
| CTCTAAGCAAATCCACCAGA+TGG | 0.604393 | 4.3:+4911075 | MS.gene55771:CDS |
| AGCAGAGAGAGAGATCTCGC+TGG | 0.607582 | 4.3:-4911131 | None:intergenic |
| TGGTCAACAATGATCTCTGG+TGG | 0.640783 | 4.3:-4912836 | None:intergenic |
| AGATCAGACAAGAATATGAG+CGG | 0.642819 | 4.3:+4911325 | MS.gene55771:CDS |
| GGATAAATCTCACCATCTGG+TGG | 0.662922 | 4.3:-4911087 | None:intergenic |
| CATGTAAAATATCTTCAACA+CGG | 0.686965 | 4.3:-4912172 | None:intergenic |
| GTGAAAATACTCTTGATGCA+CGG | 0.687449 | 4.3:+4913361 | MS.gene55771:CDS |
| CAGGTGGAAGATAGACATTG+TGG | 0.702848 | 4.3:-4912856 | None:intergenic |
| TCTTCTCCGAAAATGAACGA+TGG | 0.714255 | 4.3:+4911046 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTACAAATAATATAAAAT+TGG | - | chr4.3:4912372-4912391 | None:intergenic | 10.0% |
| !! | GAAACAAAAAAAAAAAAAAA+AGG | - | chr4.3:4911250-4911269 | None:intergenic | 10.0% |
| !!! | TTTTTTCAAAAAAAAAAATC+TGG | + | chr4.3:4911804-4911823 | MS.gene55771:intron | 10.0% |
| !! | AGACTTCTATTTAAATATTA+AGG | + | chr4.3:4912929-4912948 | MS.gene55771:intron | 15.0% |
| !! | ATTTCAGATATTGAATATAT+TGG | + | chr4.3:4911525-4911544 | MS.gene55771:intron | 15.0% |
| !! | TTCAAATGATAATTATATAC+TGG | + | chr4.3:4912517-4912536 | MS.gene55771:intron | 15.0% |
| !!! | ATTCTAAACTTTTGAATTTT+TGG | + | chr4.3:4913853-4913872 | MS.gene55771:intron | 15.0% |
| !!! | ATTTTATGTATTTGGTTTAT+TGG | + | chr4.3:4914396-4914415 | MS.gene55771:intron | 15.0% |
| !!! | TATTCTTCTGATATTATTTT+AGG | + | chr4.3:4912628-4912647 | MS.gene55771:intron | 15.0% |
| !! | AAGTAATTGAATGTAATCAA+AGG | - | chr4.3:4911781-4911800 | None:intergenic | 20.0% |
| !! | ATTGTATAGAATGAAAACTT+TGG | + | chr4.3:4914329-4914348 | MS.gene55771:intron | 20.0% |
| !! | CTAGTATATTCATGAAAAAT+TGG | + | chr4.3:4912454-4912473 | MS.gene55771:intron | 20.0% |
| !! | TGAAATATTGTACGTATTAA+GGG | + | chr4.3:4913651-4913670 | MS.gene55771:intron | 20.0% |
| !! | TGTACGAAAAAAAAAAAGAA+AGG | + | chr4.3:4913530-4913549 | MS.gene55771:intron | 20.0% |
| !! | TTAAATATTAAGGAACTGTA+TGG | + | chr4.3:4912939-4912958 | MS.gene55771:intron | 20.0% |
| !! | TTGAAATATTGTACGTATTA+AGG | + | chr4.3:4913650-4913669 | MS.gene55771:intron | 20.0% |
| !! | TTGATATATTCTAATTTCTG+TGG | + | chr4.3:4912014-4912033 | MS.gene55771:intron | 20.0% |
| !!! | AGATTATATTTTGTTGACTT+TGG | + | chr4.3:4914304-4914323 | MS.gene55771:intron | 20.0% |
| !!! | ATGAAAACTTTGGTATTTTT+TGG | + | chr4.3:4914339-4914358 | MS.gene55771:intron | 20.0% |
| !!! | CATATTATTTTCAACTAGAA+AGG | + | chr4.3:4913496-4913515 | MS.gene55771:intron | 20.0% |
| ! | AAAGAGAATGATTAGAGAAA+TGG | - | chr4.3:4911169-4911188 | None:intergenic | 25.0% |
| ! | AAGAAAATACACATTGAGTA+AGG | - | chr4.3:4913804-4913823 | None:intergenic | 25.0% |
| ! | AATCAAGAGTTTCAAACATA+AGG | + | chr4.3:4913039-4913058 | MS.gene55771:intron | 25.0% |
| ! | AATTGGTTGAAATTGAATTC+TGG | + | chr4.3:4911470-4911489 | MS.gene55771:intron | 25.0% |
| ! | AGAAGAAACAAAAAAGAATG+TGG | - | chr4.3:4914536-4914555 | None:intergenic | 25.0% |
| ! | CAAAAAACACAATGAAGATA+CGG | - | chr4.3:4911704-4911723 | None:intergenic | 25.0% |
| ! | CATGTAAAATATCTTCAACA+CGG | - | chr4.3:4912175-4912194 | None:intergenic | 25.0% |
| ! | CTACAAATGATAAAGATACT+TGG | - | chr4.3:4912299-4912318 | None:intergenic | 25.0% |
| ! | CTGATATCTAATATTAATGC+AGG | - | chr4.3:4913261-4913280 | None:intergenic | 25.0% |
| ! | TACATGTCAGATTAAACTTA+AGG | + | chr4.3:4911869-4911888 | MS.gene55771:intron | 25.0% |
| ! | TATAACATTGAGATTGTGAT+CGG | - | chr4.3:4911505-4911524 | None:intergenic | 25.0% |
| ! | TATTTCCAAAATATGATGTG+TGG | + | chr4.3:4911897-4911916 | MS.gene55771:intron | 25.0% |
| ! | TGAACAGAATACAATTTGAT+GGG | - | chr4.3:4914005-4914024 | None:intergenic | 25.0% |
| ! | TGATAATTATATACTGGCAT+AGG | + | chr4.3:4912523-4912542 | MS.gene55771:intron | 25.0% |
| !! | AATTGGTGAAAATGATCTTT+TGG | - | chr4.3:4913942-4913961 | None:intergenic | 25.0% |
| !! | AGATTCTTGTTTACACTTAT+CGG | + | chr4.3:4912317-4912336 | MS.gene55771:intron | 25.0% |
| !! | CATGCTAACTTCAATTATTT+TGG | - | chr4.3:4912555-4912574 | None:intergenic | 25.0% |
| !! | GTTGAAGATATTTTACATGT+GGG | + | chr4.3:4912176-4912195 | MS.gene55771:CDS | 25.0% |
| !! | GTTGTCTCATTTTATGTATT+TGG | + | chr4.3:4914388-4914407 | MS.gene55771:intron | 25.0% |
| !! | TATTGTTTCTTCTGTTATGT+GGG | + | chr4.3:4914233-4914252 | MS.gene55771:intron | 25.0% |
| !! | TGTTGAAGATATTTTACATG+TGG | + | chr4.3:4912175-4912194 | MS.gene55771:CDS | 25.0% |
| !! | TTACTCAATGTGTATTTTCT+TGG | + | chr4.3:4913803-4913822 | MS.gene55771:intron | 25.0% |
| !! | TTATTGTTTCTTCTGTTATG+TGG | + | chr4.3:4914232-4914251 | MS.gene55771:intron | 25.0% |
| !! | TTGATTAGTTACACATATTC+TGG | + | chr4.3:4913008-4913027 | MS.gene55771:intron | 25.0% |
| !! | TTTAGTTGGTTTATTAGTCT+TGG | + | chr4.3:4914103-4914122 | MS.gene55771:intron | 25.0% |
| !! | TTTGAAACAATCAATGAGAA+TGG | - | chr4.3:4912503-4912522 | None:intergenic | 25.0% |
| !! | TTTTCTTTCGAATTTCAACT+TGG | - | chr4.3:4911359-4911378 | None:intergenic | 25.0% |
| !!! | AGGAAAACTTTGGTATTTTT+TGG | + | chr4.3:4914040-4914059 | MS.gene55771:intron | 25.0% |
| !!! | AGTTAGCATGTTTAATTTTG+TGG | + | chr4.3:4912565-4912584 | MS.gene55771:intron | 25.0% |
| !!! | GTTGTCTCATTTTATTTAGT+TGG | + | chr4.3:4914089-4914108 | MS.gene55771:intron | 25.0% |
| !!! | TTAGTTGGTTTATTAGTCTT+GGG | + | chr4.3:4914104-4914123 | MS.gene55771:intron | 25.0% |
| !!! | TTGTTTCTTCTGTTTTATGT+GGG | + | chr4.3:4914545-4914564 | MS.gene55771:intron | 25.0% |
| !!! | TTTGTTTCTTCTGTTTTATG+TGG | + | chr4.3:4914544-4914563 | MS.gene55771:intron | 25.0% |
| !!! | TTTTTTTTGTTTCTTCGTGT+AGG | + | chr4.3:4911257-4911276 | MS.gene55771:intron | 25.0% |
| AAAAAACTACCACATATGTG+TGG | + | chr4.3:4914145-4914164 | MS.gene55771:intron | 30.0% | |
| AAAATAAACTGGTTAGCATC+TGG | + | chr4.3:4914576-4914595 | MS.gene55771:intron | 30.0% | |
| AAATGTTAGAAGTTATCAGG+GGG | - | chr4.3:4913769-4913788 | None:intergenic | 30.0% | |
| AAATTGTATTCTGTTCACCT+TGG | + | chr4.3:4914008-4914027 | MS.gene55771:intron | 30.0% | |
| AAGGATATTAGTATGCAACA+AGG | + | chr4.3:4913703-4913722 | MS.gene55771:intron | 30.0% | |
| AAGTTGTATTAGTGTGTGTT+TGG | + | chr4.3:4913097-4913116 | MS.gene55771:intron | 30.0% | |
| AATACAATTTGATGGGAAGT+GGG | - | chr4.3:4913998-4914017 | None:intergenic | 30.0% | |
| AGAAGAATAAGTTCATGTAG+AGG | - | chr4.3:4912617-4912636 | None:intergenic | 30.0% | |
| AGCATAGCTGATTATATTTG+TGG | + | chr4.3:4913285-4913304 | MS.gene55771:intron | 30.0% | |
| AGTTGTATTAGTGTGTGTTT+GGG | + | chr4.3:4913098-4913117 | MS.gene55771:intron | 30.0% | |
| ATCTATAGCCAAATCTTCAT+TGG | - | chr4.3:4914488-4914507 | None:intergenic | 30.0% | |
| ATGAAAAATTGGAGTGATCA+GGG | + | chr4.3:4912465-4912484 | MS.gene55771:intron | 30.0% | |
| ATTACTTTGACATTTGTCTG+TGG | + | chr4.3:4911447-4911466 | MS.gene55771:intron | 30.0% | |
| CAAATGTTAGAAGTTATCAG+GGG | - | chr4.3:4913770-4913789 | None:intergenic | 30.0% | |
| CAACTAATCACATGTTTAGA+TGG | - | chr4.3:4913234-4913253 | None:intergenic | 30.0% | |
| GAAGAAACAATAAAACGATG+TGG | - | chr4.3:4914225-4914244 | None:intergenic | 30.0% | |
| GAAGAATAAGTTCATGTAGA+GGG | - | chr4.3:4912616-4912635 | None:intergenic | 30.0% | |
| GCAAATGTTAGAAGTTATCA+GGG | - | chr4.3:4913771-4913790 | None:intergenic | 30.0% | |
| GTGAACAGAATACAATTTGA+TGG | - | chr4.3:4914006-4914025 | None:intergenic | 30.0% | |
| TCAATGAGAATGGTTCATTA+AGG | - | chr4.3:4912493-4912512 | None:intergenic | 30.0% | |
| TCTAAAAGATCTCATTGTTC+AGG | + | chr4.3:4912220-4912239 | MS.gene55771:CDS | 30.0% | |
| TGCAAGATCAAACGATAATT+AGG | - | chr4.3:4912271-4912290 | None:intergenic | 30.0% | |
| TGCACAAAAAAAATTACCTC+CGG | - | chr4.3:4913414-4913433 | None:intergenic | 30.0% | |
| ! | AAGTTCCACACATCATATTT+TGG | - | chr4.3:4911905-4911924 | None:intergenic | 30.0% |
| ! | GAACAATGAGATCTTTTAGA+AGG | - | chr4.3:4912220-4912239 | None:intergenic | 30.0% |
| !! | ATAACGGATTGATGAGAATA+TGG | - | chr4.3:4913972-4913991 | None:intergenic | 30.0% |
| !! | TAACGGATTGATGAGAATAT+GGG | - | chr4.3:4913971-4913990 | None:intergenic | 30.0% |
| !!! | AATTTTTGGCTTGAAAACCA+GGG | + | chr4.3:4913867-4913886 | MS.gene55771:intron | 30.0% |
| AATGACCAGAAATCAAGCTT+TGG | - | chr4.3:4911618-4911637 | None:intergenic | 35.0% | |
| ACTGTATGGATCTGTTAATC+AGG | + | chr4.3:4912953-4912972 | MS.gene55771:intron | 35.0% | |
| AGAACATGAACTTTACCAGT+AGG | - | chr4.3:4912909-4912928 | None:intergenic | 35.0% | |
| AGATCAGACAAGAATATGAG+CGG | + | chr4.3:4911325-4911344 | MS.gene55771:CDS | 35.0% | |
| ATACAATTTGATGGGAAGTG+GGG | - | chr4.3:4913997-4914016 | None:intergenic | 35.0% | |
| ATGGAAGACGTGTTATATGT+CGG | + | chr4.3:4911744-4911763 | MS.gene55771:intron | 35.0% | |
| ATTTGCCAAAGCTTGATTTC+TGG | + | chr4.3:4911610-4911629 | MS.gene55771:intron | 35.0% | |
| ATTTGTGGAAAATTCAGCTC+TGG | + | chr4.3:4913300-4913319 | MS.gene55771:intron | 35.0% | |
| CATGAAAAATTGGAGTGATC+AGG | + | chr4.3:4912464-4912483 | MS.gene55771:intron | 35.0% | |
| CGCAAATGTTAGAAGTTATC+AGG | - | chr4.3:4913772-4913791 | None:intergenic | 35.0% | |
| CTGTATGGATCTGTTAATCA+GGG | + | chr4.3:4912954-4912973 | MS.gene55771:intron | 35.0% | |
| GAACATGAACTTTACCAGTA+GGG | - | chr4.3:4912908-4912927 | None:intergenic | 35.0% | |
| GAATACAATTTGATGGGAAG+TGG | - | chr4.3:4913999-4914018 | None:intergenic | 35.0% | |
| GAATGTAATCAAAGGCAAGT+TGG | - | chr4.3:4911773-4911792 | None:intergenic | 35.0% | |
| GAGAATATGGGAGGAATAAT+TGG | - | chr4.3:4913959-4913978 | None:intergenic | 35.0% | |
| GAGCAGTATAGCAAATACAA+AGG | - | chr4.3:4913920-4913939 | None:intergenic | 35.0% | |
| GCATTGAAATTTGATCCTCT+CGG | + | chr4.3:4911212-4911231 | MS.gene55771:intron | 35.0% | |
| GGTCATATGACAATCAAAGT+TGG | + | chr4.3:4914191-4914210 | MS.gene55771:intron | 35.0% | |
| GTATTAAGGGTAAGATAGCT+GGG | + | chr4.3:4913664-4913683 | MS.gene55771:intron | 35.0% | |
| GTGAAAATACTCTTGATGCA+CGG | + | chr4.3:4913361-4913380 | MS.gene55771:CDS | 35.0% | |
| TAAATCACGACAGTACCATA+TGG | + | chr4.3:4913129-4913148 | MS.gene55771:intron | 35.0% | |
| TATTAAGGGTAAGATAGCTG+GGG | + | chr4.3:4913665-4913684 | MS.gene55771:intron | 35.0% | |
| TCCTGTTTACGAGAATATGT+GGG | + | chr4.3:4914067-4914086 | MS.gene55771:intron | 35.0% | |
| TGAAAAATTGGAGTGATCAG+GGG | + | chr4.3:4912466-4912485 | MS.gene55771:intron | 35.0% | |
| TGACAATCAAAGTTGGCAAT+AGG | + | chr4.3:4914198-4914217 | MS.gene55771:intron | 35.0% | |
| TGCTCAGTCAACTAAAAACA+CGG | - | chr4.3:4913068-4913087 | None:intergenic | 35.0% | |
| TTGACATTTGTCTGTGGAAT+TGG | + | chr4.3:4911453-4911472 | MS.gene55771:intron | 35.0% | |
| ! | CAAAGGATGATTTGGCAAAT+AGG | + | chr4.3:4914170-4914189 | MS.gene55771:intron | 35.0% |
| !! | GGGAAGTGTTGAAAATAAAC+TGG | + | chr4.3:4914565-4914584 | MS.gene55771:intron | 35.0% |
| !!! | GAATTTTTGGCTTGAAAACC+AGG | + | chr4.3:4913866-4913885 | MS.gene55771:intron | 35.0% |
| !!! | TTTTTTGGAGTGTCCTATGT+AGG | + | chr4.3:4914354-4914373 | MS.gene55771:intron | 35.0% |
| AAGTTCATGTAGAGGGAAAG+AGG | - | chr4.3:4912609-4912628 | None:intergenic | 40.0% | |
| AATGAAAGAAGTTGCAGCCA+AGG | + | chr4.3:4912124-4912143 | MS.gene55771:CDS | 40.0% | |
| ACATACTTGTGCATAGAAGG+CGG | - | chr4.3:4912655-4912674 | None:intergenic | 40.0% | |
| ACCCACATATTCTCGTAAAC+AGG | - | chr4.3:4914071-4914090 | None:intergenic | 40.0% | |
| ACTCACTGCCACAAACAATT+GGG | - | chr4.3:4912040-4912059 | None:intergenic | 40.0% | |
| AGTGTTCCGTAAAAAGCTTC+CGG | + | chr4.3:4913392-4913411 | MS.gene55771:CDS | 40.0% | |
| AGTTCATGTAGAGGGAAAGA+GGG | - | chr4.3:4912608-4912627 | None:intergenic | 40.0% | |
| CAATATCGAGAAGCTTCAGT+TGG | + | chr4.3:4911284-4911303 | MS.gene55771:CDS | 40.0% | |
| CACATGAGTGCAAACATATG+TGG | - | chr4.3:4914460-4914479 | None:intergenic | 40.0% | |
| CATATGTTTGCACTCATGTG+TGG | + | chr4.3:4914460-4914479 | MS.gene55771:intron | 40.0% | |
| CGTATTAAGGGTAAGATAGC+TGG | + | chr4.3:4913663-4913682 | MS.gene55771:intron | 40.0% | |
| GATATCTGGGAGGAAAACTT+TGG | + | chr4.3:4914030-4914049 | MS.gene55771:intron | 40.0% | |
| GCTCACATTCAAAAGTTCCT+TGG | - | chr4.3:4912144-4912163 | None:intergenic | 40.0% | |
| GTCCTGTTTACGAGAATATG+TGG | + | chr4.3:4914066-4914085 | MS.gene55771:intron | 40.0% | |
| TACTCACTGCCACAAACAAT+TGG | - | chr4.3:4912041-4912060 | None:intergenic | 40.0% | |
| TATCTTCAACACGGTGATGA+CGG | - | chr4.3:4912166-4912185 | None:intergenic | 40.0% | |
| TATGCACAAGTATGTGGACT+AGG | + | chr4.3:4912660-4912679 | MS.gene55771:intron | 40.0% | |
| TCCACATACTTGTGCATAGA+AGG | - | chr4.3:4912658-4912677 | None:intergenic | 40.0% | |
| TCCTATGTAGGAGAATACGA+GGG | + | chr4.3:4914366-4914385 | MS.gene55771:intron | 40.0% | |
| TCTGTTCACCTTGGATATCT+GGG | + | chr4.3:4914017-4914036 | MS.gene55771:intron | 40.0% | |
| TGGGTGATGTTGAAAATGAC+TGG | + | chr4.3:4914252-4914271 | MS.gene55771:intron | 40.0% | |
| TGTAGAACTGACACTTCTGA+TGG | + | chr4.3:4911725-4911744 | MS.gene55771:intron | 40.0% | |
| TGTAGAGTCGTTTGACCATA+TGG | - | chr4.3:4913147-4913166 | None:intergenic | 40.0% | |
| TTCTGTTCACCTTGGATATC+TGG | + | chr4.3:4914016-4914035 | MS.gene55771:intron | 40.0% | |
| TTGTGGTCAACAATGATCTC+TGG | - | chr4.3:4912842-4912861 | None:intergenic | 40.0% | |
| ! | AAAGGTGCAAACAGAGAGAA+GGG | - | chr4.3:4913902-4913921 | None:intergenic | 40.0% |
| ! | CTTCTGTCTTGTTGAGATGT+CGG | + | chr4.3:4912738-4912757 | MS.gene55771:CDS | 40.0% |
| ! | CTTTTTCTTCAGCTTCTTGG+CGG | - | chr4.3:4911111-4911130 | None:intergenic | 40.0% |
| ! | GAAAATGACTGGTTAGCATC+TGG | + | chr4.3:4914263-4914282 | MS.gene55771:intron | 40.0% |
| ! | TTACCTCCGGAAGCTTTTTA+CGG | - | chr4.3:4913401-4913420 | None:intergenic | 40.0% |
| ! | TTGTGTCACTATCACATGCA+AGG | - | chr4.3:4911572-4911591 | None:intergenic | 40.0% |
| !! | CAGGAGTATTCTGAAAAAGC+AGG | + | chr4.3:4912806-4912825 | MS.gene55771:CDS | 40.0% |
| !! | GATTTCTGGTCATTGTCTAG+TGG | + | chr4.3:4911624-4911643 | MS.gene55771:intron | 40.0% |
| !! | TGGCTTTTTCTTCAGCTTCT+TGG | - | chr4.3:4911114-4911133 | None:intergenic | 40.0% |
| !!! | GGTCTTCTGCTATTTTGTCT+TGG | + | chr4.3:4914417-4914436 | MS.gene55771:intron | 40.0% |
| AAATACTCTTGATGCACGGC+TGG | + | chr4.3:4913365-4913384 | MS.gene55771:CDS | 45.0% | |
| AAGGTGCAAACAGAGAGAAG+GGG | - | chr4.3:4913901-4913920 | None:intergenic | 45.0% | |
| ACCACATATGTGTGGCTCAA+AGG | + | chr4.3:4914153-4914172 | MS.gene55771:intron | 45.0% | |
| ACCCTCGTATTCTCCTACAT+AGG | - | chr4.3:4914370-4914389 | None:intergenic | 45.0% | |
| AGGAGAATTACATTGCCGAG+AGG | - | chr4.3:4911230-4911249 | None:intergenic | 45.0% | |
| ATGTAGAGGGAAAGAGGGAA+GGG | - | chr4.3:4912603-4912622 | None:intergenic | 45.0% | |
| CAATGCAGCTGAATGCTTCT+CGG | + | chr4.3:4912063-4912082 | MS.gene55771:CDS | 45.0% | |
| CAGGTGGAAGATAGACATTG+TGG | - | chr4.3:4912859-4912878 | None:intergenic | 45.0% | |
| CGACATCTCAACAAGACAGA+AGG | - | chr4.3:4912740-4912759 | None:intergenic | 45.0% | |
| CGGATTGATGAGAATATGGG+AGG | - | chr4.3:4913968-4913987 | None:intergenic | 45.0% | |
| CGTAAGAAAGCCTTCTCTGA+TGG | + | chr4.3:4913208-4913227 | MS.gene55771:intron | 45.0% | |
| CTCTAAGCAAATCCACCAGA+TGG | + | chr4.3:4911075-4911094 | MS.gene55771:CDS | 45.0% | |
| GCCTTCTATGCACAAGTATG+TGG | + | chr4.3:4912654-4912673 | MS.gene55771:intron | 45.0% | |
| GGATAAATCTCACCATCTGG+TGG | - | chr4.3:4911090-4911109 | None:intergenic | 45.0% | |
| GTCCTATGTAGGAGAATACG+AGG | + | chr4.3:4914365-4914384 | MS.gene55771:intron | 45.0% | |
| GTGTGGCTCAAAGGATGATT+TGG | + | chr4.3:4914162-4914181 | MS.gene55771:intron | 45.0% | |
| GTGTGGCTCCAATGAAGATT+TGG | + | chr4.3:4914477-4914496 | MS.gene55771:intron | 45.0% | |
| GTTTAGATGGCCATCAGAGA+AGG | - | chr4.3:4913221-4913240 | None:intergenic | 45.0% | |
| TCCTTTGAGCCACACATATG+TGG | - | chr4.3:4914157-4914176 | None:intergenic | 45.0% | |
| TGGTCAACAATGATCTCTGG+TGG | - | chr4.3:4912839-4912858 | None:intergenic | 45.0% | |
| TTCTGTGGCCCAATTGTTTG+TGG | + | chr4.3:4912029-4912048 | MS.gene55771:intron | 45.0% | |
| ! | CAAAGGTGCAAACAGAGAGA+AGG | - | chr4.3:4913903-4913922 | None:intergenic | 45.0% |
| ! | CTTGTCCAAAGAGCTGCTTT+CGG | - | chr4.3:4914636-4914655 | None:intergenic | 45.0% |
| ! | GTGGAAAATTCAGCTCTGGT+GGG | + | chr4.3:4913304-4913323 | MS.gene55771:intron | 45.0% |
| ! | GTTTTCCTCCCAGATATCCA+AGG | - | chr4.3:4914028-4914047 | None:intergenic | 45.0% |
| ! | TCGTGAGTGTTGTGATGCTT+GGG | - | chr4.3:4912884-4912903 | None:intergenic | 45.0% |
| ! | TGGAAAATTCAGCTCTGGTG+GGG | + | chr4.3:4913305-4913324 | MS.gene55771:intron | 45.0% |
| ! | TGTGGAAAATTCAGCTCTGG+TGG | + | chr4.3:4913303-4913322 | MS.gene55771:intron | 45.0% |
| ! | TTCGTGAGTGTTGTGATGCT+TGG | - | chr4.3:4912885-4912904 | None:intergenic | 45.0% |
| !! | ATGAAGCACTGAGAGAGACA+CGG | - | chr4.3:4911850-4911869 | None:intergenic | 45.0% |
| AAGGGTAAGATAGCTGGGGA+GGG | + | chr4.3:4913669-4913688 | MS.gene55771:intron | 50.0% | |
| ACAACACTCACGAACCCTAC+TGG | + | chr4.3:4912891-4912910 | MS.gene55771:CDS | 50.0% | |
| CAGATCCGAAAGCAGCTCTT+TGG | + | chr4.3:4914628-4914647 | MS.gene55771:intron | 50.0% | |
| CATGTAGAGGGAAAGAGGGA+AGG | - | chr4.3:4912604-4912623 | None:intergenic | 50.0% | |
| GAGAAGGGGAAAAATCTCCC+TGG | - | chr4.3:4913887-4913906 | None:intergenic | 50.0% | |
| GATCTCTCTCTCTGCTGAAG+AGG | + | chr4.3:4911138-4911157 | MS.gene55771:CDS | 50.0% | |
| GATGGGAAGTGGGGTGATAA+CGG | - | chr4.3:4913988-4914007 | None:intergenic | 50.0% | |
| GCACTTGGTAGAACATGTGC+TGG | + | chr4.3:4912772-4912791 | MS.gene55771:CDS | 50.0% | |
| GGCGGATAAATCTCACCATC+TGG | - | chr4.3:4911093-4911112 | None:intergenic | 50.0% | |
| GTTCACCTTGGATATCTGGG+AGG | + | chr4.3:4914020-4914039 | MS.gene55771:intron | 50.0% | |
| GTTCCGTAAAAAGCTTCCGG+AGG | + | chr4.3:4913395-4913414 | MS.gene55771:CDS | 50.0% | |
| TAAGGGTAAGATAGCTGGGG+AGG | + | chr4.3:4913668-4913687 | MS.gene55771:intron | 50.0% | |
| TCGGAAACATGACGTGCACT+TGG | + | chr4.3:4912757-4912776 | MS.gene55771:CDS | 50.0% | |
| ! | AAAATTCAGCTCTGGTGGGG+TGG | + | chr4.3:4913308-4913327 | MS.gene55771:intron | 50.0% |
| ! | AAGAGCTGCTTTCGGATCTG+TGG | - | chr4.3:4914628-4914647 | None:intergenic | 50.0% |
| ! | ATCTGGTGTCAACGTGTGTC+TGG | + | chr4.3:4911821-4911840 | MS.gene55771:intron | 50.0% |
| AGCAGAGAGAGAGATCTCGC+TGG | - | chr4.3:4911134-4911153 | None:intergenic | 55.0% | |
| ATAGCTGGGGAGGGACTTCA+GGG | + | chr4.3:4913678-4913697 | MS.gene55771:intron | 55.0% | |
| GTGTTGTGATGCTTGGGTGC+AGG | - | chr4.3:4912878-4912897 | None:intergenic | 55.0% | |
| TTGTGATGCTTGGGTGCAGG+TGG | - | chr4.3:4912875-4912894 | None:intergenic | 55.0% | |
| !! | GTGGTGTTGGCTTCTCGTGA+TGG | + | chr4.3:4913327-4913346 | MS.gene55771:CDS | 55.0% |
| AGAGGGAAAGAGGGAAGGGC+AGG | - | chr4.3:4912599-4912618 | None:intergenic | 60.0% | |
| GAGGGAAAGAGGGAAGGGCA+GGG | - | chr4.3:4912598-4912617 | None:intergenic | 60.0% | |
| GATAGCTGGGGAGGGACTTC+AGG | + | chr4.3:4913677-4913696 | MS.gene55771:intron | 60.0% | |
| TGTGCTGGATGCAGCTGCAC+AGG | + | chr4.3:4912787-4912806 | MS.gene55771:CDS | 60.0% | |
| GGGGAGGGACTTCAGGGCTA+AGG | + | chr4.3:4913684-4913703 | MS.gene55771:intron | 65.0% | |
| ! | CAGCTCTGGTGGGGTGGTGT+TGG | + | chr4.3:4913314-4913333 | MS.gene55771:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 4911058 | 4914666 | 4911058 | ID=MS.gene55771 |
| chr4.3 | mRNA | 4911058 | 4914666 | 4911058 | ID=MS.gene55771.t1;Parent=MS.gene55771 |
| chr4.3 | exon | 4911058 | 4911159 | 4911058 | ID=MS.gene55771.t1.exon1;Parent=MS.gene55771.t1 |
| chr4.3 | CDS | 4911058 | 4911159 | 4911058 | ID=cds.MS.gene55771.t1;Parent=MS.gene55771.t1 |
| chr4.3 | exon | 4911279 | 4911379 | 4911279 | ID=MS.gene55771.t1.exon2;Parent=MS.gene55771.t1 |
| chr4.3 | CDS | 4911279 | 4911379 | 4911279 | ID=cds.MS.gene55771.t1;Parent=MS.gene55771.t1 |
| chr4.3 | exon | 4912055 | 4912241 | 4912055 | ID=MS.gene55771.t1.exon3;Parent=MS.gene55771.t1 |
| chr4.3 | CDS | 4912055 | 4912241 | 4912055 | ID=cds.MS.gene55771.t1;Parent=MS.gene55771.t1 |
| chr4.3 | exon | 4912716 | 4912912 | 4912716 | ID=MS.gene55771.t1.exon4;Parent=MS.gene55771.t1 |
| chr4.3 | CDS | 4912716 | 4912912 | 4912716 | ID=cds.MS.gene55771.t1;Parent=MS.gene55771.t1 |
| chr4.3 | exon | 4913317 | 4913416 | 4913317 | ID=MS.gene55771.t1.exon5;Parent=MS.gene55771.t1 |
| chr4.3 | CDS | 4913317 | 4913416 | 4913317 | ID=cds.MS.gene55771.t1;Parent=MS.gene55771.t1 |
| chr4.3 | exon | 4914631 | 4914666 | 4914631 | ID=MS.gene55771.t1.exon6;Parent=MS.gene55771.t1 |
| chr4.3 | CDS | 4914631 | 4914666 | 4914631 | ID=cds.MS.gene55771.t1;Parent=MS.gene55771.t1 |
| Gene Sequence |
| Protein sequence |
