AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005149

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005149.t1 MTR_1g022165 100.000 207 0 0 1 207 1 207 2.91e-152 420
MS.gene005149.t1 MTR_7g111590 97.585 207 5 0 1 207 1 207 9.26e-150 414
MS.gene005149.t1 MTR_5g026750 97.101 207 6 0 1 207 1 207 3.61e-149 412
MS.gene005149.t1 MTR_7g111590 97.101 207 4 1 1 207 1 205 3.09e-147 407
MS.gene005149.t1 MTR_8g071810 65.432 81 28 0 104 184 67 147 9.57e-28 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005149.t1 AT3G49010 87.435 191 24 0 2 192 1 191 5.59e-126 354
MS.gene005149.t1 AT3G49010 87.435 191 24 0 2 192 1 191 5.59e-126 354
MS.gene005149.t1 AT3G49010 87.435 191 24 0 2 192 1 191 5.59e-126 354
MS.gene005149.t1 AT3G49010 87.435 191 24 0 2 192 1 191 5.59e-126 354
MS.gene005149.t1 AT3G49010 87.435 191 24 0 2 192 1 191 5.59e-126 354
MS.gene005149.t1 AT3G49010 86.911 191 23 1 2 192 1 189 1.51e-123 348
MS.gene005149.t1 AT5G23900 84.946 186 28 0 2 187 1 186 1.14e-118 335
MS.gene005149.t1 AT3G48960 77.083 192 44 0 2 193 1 192 8.96e-109 310
MS.gene005149.t1 AT3G49010 62.304 191 19 1 2 192 1 138 3.69e-79 233

Find 67 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCTTCACTGCCTTCTTT+TGG 0.308723 1.1:-60362336 None:intergenic
TTGGTCTTGCGTGCGCGCCT+TGG 0.314350 1.1:-60363502 None:intergenic
TCGCCGCAAGAACCGTTCTT+TGG 0.319042 1.1:+60363420 MS.gene005149:CDS
TGCTTACGGAAGTGTTCATT+TGG 0.319315 1.1:-60361874 None:intergenic
ATGGTTGGAGCAAGCTTCTT+GGG 0.323930 1.1:-60363379 None:intergenic
GCGCACCAACAAGCGTCATT+TGG 0.336081 1.1:+60363808 MS.gene005149:CDS
GCCAACTGTTGAACTTGTTA+AGG 0.359245 1.1:+60363736 MS.gene005149:CDS
TGGTCTTGCGTGCGCGCCTT+GGG 0.368380 1.1:-60363501 None:intergenic
AATGGTTGGAGCAAGCTTCT+TGG 0.375579 1.1:-60363380 None:intergenic
CAAAGGTCCAGCGGTTGGCC+GGG 0.376507 1.1:-60362362 None:intergenic
CGCACCAACAAGCGTCATTT+GGG 0.378501 1.1:+60363809 MS.gene005149:CDS
TTCAAGAGAAAATCCTTTCC+CGG 0.387347 1.1:-60362434 None:intergenic
CGTCTCCTGGTCTTCCTAGC+TGG 0.389013 1.1:-60361931 None:intergenic
GCAGTTTGACCGTGAACAAT+TGG 0.409288 1.1:-60362388 None:intergenic
TCAAAGGTCCAGCGGTTGGC+CGG 0.411486 1.1:-60362363 None:intergenic
AAAGGTCCAGCGGTTGGCCG+GGG 0.418246 1.1:-60362361 None:intergenic
CATAGTTCTGCCAATGCTTA+CGG 0.420637 1.1:-60361888 None:intergenic
AGCAAGCTTCTTGGGGATAC+CGG 0.426394 1.1:-60363371 None:intergenic
GAGGGCTGCTGAGGCAGAAA+AGG 0.445694 1.1:+60363844 MS.gene005149:CDS
GCTTACGGAAGTGTTCATTT+GGG 0.453054 1.1:-60361873 None:intergenic
GGCCAACCGCTGGACCTTTG+AGG 0.459880 1.1:+60362365 MS.gene005149:CDS
CGCAAGAACCGTTCTTTGGA+GGG 0.473099 1.1:+60363424 MS.gene005149:CDS
AGCACCCAAATGACGCTTGT+TGG 0.478609 1.1:-60363813 None:intergenic
CCTTGGGAAAACAACCAACT+TGG 0.479943 1.1:-60363485 None:intergenic
TAGGAAGACCAGGAGACGCT+TGG 0.484150 1.1:+60361936 MS.gene005149:CDS
CCTTTGAGGCCAATTGTTCA+CGG 0.485229 1.1:+60362379 MS.gene005149:CDS
ACAAGCGTCATTTGGGTGCT+AGG 0.489744 1.1:+60363816 MS.gene005149:CDS
CCGCAAGAACCGTTCTTTGG+AGG 0.494965 1.1:+60363423 MS.gene005149:CDS
AGGAAGACCAGGAGACGCTT+GGG 0.497890 1.1:+60361937 MS.gene005149:CDS
GTAATTACCCAAGCGTCTCC+TGG 0.500114 1.1:-60361944 None:intergenic
GACGCTTGTTGGTGCGCTCA+AGG 0.500487 1.1:-60363802 None:intergenic
TAAGGTTACAGATGAAATGA+AGG 0.502882 1.1:+60363754 MS.gene005149:CDS
AAGAAGCTTGCTCCAACCAT+TGG 0.507390 1.1:+60363382 MS.gene005149:CDS
CAATCGGCAAGTATGATCCT+TGG 0.510540 1.1:-60363703 None:intergenic
GTTGGCTTCTCCCTCACAAT+CGG 0.511949 1.1:-60363719 None:intergenic
GTGGCATTAGCAAGTTCCTC+AGG 0.518954 1.1:-60363674 None:intergenic
AAGAACGGTTCTTGCGGCGA+TGG 0.520566 1.1:-60363417 None:intergenic
ATGAAACTTCGTGCCGGGAA+AGG 0.523982 1.1:+60362421 MS.gene005149:CDS
ACCTTAACAAGTTCAACAGT+TGG 0.524264 1.1:-60363737 None:intergenic
CCGTGAACAATTGGCCTCAA+AGG 0.527396 1.1:-60362379 None:intergenic
ATTTGGGTGCTAGGCTCAAG+AGG 0.544127 1.1:+60363825 MS.gene005149:CDS
ATCAACCAGCTAGGAAGACC+AGG 0.552070 1.1:+60361926 MS.gene005149:CDS
GGCCTCAAAGGTCCAGCGGT+TGG 0.553506 1.1:-60362367 None:intergenic
GATCATACTTGCCGATTGTG+AGG 0.555446 1.1:+60363708 MS.gene005149:CDS
ACAACATGAAACTTCGTGCC+GGG 0.563845 1.1:+60362416 MS.gene005149:CDS
TAGGCTCAAGAGGGCTGCTG+AGG 0.568695 1.1:+60363835 MS.gene005149:CDS
AAGGTCCAGCGGTTGGCCGG+GGG 0.569118 1.1:-60362360 None:intergenic
TACAACATGAAACTTCGTGC+CGG 0.570733 1.1:+60362415 MS.gene005149:CDS
GAAAACATACAAGGCCAAGT+TGG 0.571763 1.1:+60363471 MS.gene005149:CDS
ATGAACACTTCCGTAAGCAT+TGG 0.574424 1.1:+60361878 MS.gene005149:CDS
TCAACAGAAATGCCAATGGT+TGG 0.577031 1.1:-60363394 None:intergenic
CCTCCAAAGAACGGTTCTTG+CGG 0.586577 1.1:-60363423 None:intergenic
CATGGTTCAATCAACCAGCT+AGG 0.591929 1.1:+60361917 MS.gene005149:CDS
CTTGCAGACCCTCCAAAGAA+CGG 0.595271 1.1:-60363432 None:intergenic
AACATTGTTGTGCTTCACCA+TGG 0.595442 1.1:-60361848 None:intergenic
ATCATACTTGCCGATTGTGA+GGG 0.601270 1.1:+60363709 MS.gene005149:CDS
TGGTTGGAGCAAGCTTCTTG+GGG 0.611973 1.1:-60363378 None:intergenic
GCTAATGCCACACAAGTCCA+AGG 0.623000 1.1:+60363686 MS.gene005149:CDS
AAGGCGCGCACGCAAGACCA+AGG 0.626116 1.1:+60363504 MS.gene005149:CDS
GTCTGCAAGCTAATGTGCAG+AGG 0.628654 1.1:+60363446 MS.gene005149:CDS
TTTGGGTGCTAGGCTCAAGA+GGG 0.631845 1.1:+60363826 MS.gene005149:CDS
GGCAGAACTATGTCAAAACA+TGG 0.632555 1.1:+60361899 MS.gene005149:CDS
GGCTGGGGACTCTACACCTG+AGG 0.639995 1.1:+60363658 MS.gene005149:intron
GCAGAGGCTGAAAACATACA+AGG 0.656774 1.1:+60363462 MS.gene005149:CDS
ATGGTCAACAGAAATGCCAA+TGG 0.663073 1.1:-60363398 None:intergenic
AATTGGCCTCAAAGGTCCAG+CGG 0.684475 1.1:-60362371 None:intergenic
GTATGATCCTTGGACTTGTG+TGG 0.704331 1.1:-60363693 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTAAGTTGTAAAAATAT+AGG - chr1.1:60361969-60361988 None:intergenic 10.0%
!! AAGTTATAATATGTAGTTTA+TGG - chr1.1:60363316-60363335 None:intergenic 15.0%
!! ATAAACTAAAATCATCATTG+AGG - chr1.1:60363541-60363560 None:intergenic 20.0%
!! ATATGTTACTCTTAAATGAT+TGG - chr1.1:60362881-60362900 None:intergenic 20.0%
!! TAACATATAGTTCTTGTAAT+GGG + chr1.1:60362893-60362912 MS.gene005149:intron 20.0%
!!! AATTATTTTTATTTGTCTGC+AGG + chr1.1:60363637-60363656 MS.gene005149:intron 20.0%
!!! TAATAATGGGTTTATACATA+TGG + chr1.1:60363156-60363175 MS.gene005149:intron 20.0%
!!! TTGAAATAGGAAGTATTAAT+CGG + chr1.1:60363603-60363622 MS.gene005149:intron 20.0%
! ATATTAGATAGAACTAATGC+AGG - chr1.1:60362629-60362648 None:intergenic 25.0%
! ATCTAATATAATCATTGTCG+TGG + chr1.1:60362640-60362659 MS.gene005149:intron 25.0%
! GTAACATATAGTTCTTGTAA+TGG + chr1.1:60362892-60362911 MS.gene005149:intron 25.0%
! TACAGAATTGAAGACTATAT+AGG - chr1.1:60362826-60362845 None:intergenic 25.0%
! TATTAGATAGAACTAATGCA+GGG - chr1.1:60362628-60362647 None:intergenic 25.0%
!! CATATGACTAATTGATTTCT+GGG + chr1.1:60362725-60362744 MS.gene005149:intron 25.0%
!! CCTACAGTTTAATCTATTTT+CGG - chr1.1:60362790-60362809 None:intergenic 25.0%
!! CTACAGTTTAATCTATTTTC+GGG - chr1.1:60362789-60362808 None:intergenic 25.0%
!! TAATGATCGGTTTATACATA+TGG + chr1.1:60363103-60363122 MS.gene005149:intron 25.0%
!! TCATATGACTAATTGATTTC+TGG + chr1.1:60362724-60362743 MS.gene005149:intron 25.0%
!! TTTTACGCTAAAGACTAAAT+TGG + chr1.1:60362580-60362599 MS.gene005149:intron 25.0%
AATAGCCATATGCAAAAACT+TGG - chr1.1:60363189-60363208 None:intergenic 30.0%
CAAACAAACAATTTAAGCCA+CGG - chr1.1:60362133-60362152 None:intergenic 30.0%
CAAACATGTCAAAAAACATG+AGG - chr1.1:60362042-60362061 None:intergenic 30.0%
CCGAAAATAGATTAAACTGT+AGG + chr1.1:60362787-60362806 MS.gene005149:intron 30.0%
CCTGTCATAAAAACAAAAGT+AGG - chr1.1:60363348-60363367 None:intergenic 30.0%
GCATATGACACTTAAATGAT+GGG + chr1.1:60362970-60362989 MS.gene005149:intron 30.0%
TAAGGTTACAGATGAAATGA+AGG + chr1.1:60363754-60363773 MS.gene005149:CDS 30.0%
TACTCTCAAGTTACTAAACA+TGG - chr1.1:60362857-60362876 None:intergenic 30.0%
TAGTTGAAGACTATTAAGTC+TGG - chr1.1:60363288-60363307 None:intergenic 30.0%
TGCATATGACACTTAAATGA+TGG + chr1.1:60362969-60362988 MS.gene005149:intron 30.0%
TTGAGGTTCTTATATTACCT+TGG - chr1.1:60363524-60363543 None:intergenic 30.0%
! ATGGCTCTACACTTTAATAA+TGG + chr1.1:60363142-60363161 MS.gene005149:intron 30.0%
! ATTTTCTCTTGAAGAGTTGA+AGG + chr1.1:60362444-60362463 MS.gene005149:CDS 30.0%
! CTAGAGTTCAACTTTTATTC+AGG - chr1.1:60363258-60363277 None:intergenic 30.0%
! TGGCTCTACACTTTAATAAT+GGG + chr1.1:60363143-60363162 MS.gene005149:intron 30.0%
!! AAACGATGGGTTTTTACATA+TGG + chr1.1:60363037-60363056 MS.gene005149:intron 30.0%
!! AAATGATGGGTTTATACACA+TGG + chr1.1:60362983-60363002 MS.gene005149:intron 30.0%
!! CTGTGTAGATGTTACTTTAT+GGG + chr1.1:60362505-60362524 MS.gene005149:intron 30.0%
!! TCTGTGTAGATGTTACTTTA+TGG + chr1.1:60362504-60362523 MS.gene005149:intron 30.0%
!! TGGATGATGGTTTTTACATA+TGG + chr1.1:60363123-60363142 MS.gene005149:intron 30.0%
!!! CCTACTTTTGTTTTTATGAC+AGG + chr1.1:60363345-60363364 MS.gene005149:intron 30.0%
!!! CTCATGTTTTTTGACATGTT+TGG + chr1.1:60362040-60362059 MS.gene005149:intron 30.0%
AAAACCCATCGTTTAAGTGT+CGG - chr1.1:60363031-60363050 None:intergenic 35.0%
AAACTGTAGGAAAGATCGTA+CGG + chr1.1:60362800-60362819 MS.gene005149:intron 35.0%
ACCTTAACAAGTTCAACAGT+TGG - chr1.1:60363740-60363759 None:intergenic 35.0%
CAATGATGGTATCAAAGCTA+AGG - chr1.1:60363574-60363593 None:intergenic 35.0%
CGGTTTATACATATGGATGA+TGG + chr1.1:60363110-60363129 MS.gene005149:intron 35.0%
GGTTTATACACATGGATGAT+GGG + chr1.1:60362991-60363010 MS.gene005149:intron 35.0%
TCTGCAGTGTCTTGAATTAT+AGG + chr1.1:60362193-60362212 MS.gene005149:intron 35.0%
TGGCTAGACACTTTAATGAT+CGG + chr1.1:60363090-60363109 MS.gene005149:intron 35.0%
TTCAAGAGAAAATCCTTTCC+CGG - chr1.1:60362437-60362456 None:intergenic 35.0%
TTGAAGACTATTAAGTCTGG+AGG - chr1.1:60363285-60363304 None:intergenic 35.0%
! AAATCTTCACTGCCTTCTTT+TGG - chr1.1:60362339-60362358 None:intergenic 35.0%
! TGACACCAAGTTTTTGCATA+TGG + chr1.1:60363181-60363200 MS.gene005149:intron 35.0%
!! AGCTTGTTGAACTTTAACTG+TGG + chr1.1:60362473-60362492 MS.gene005149:intron 35.0%
!! ATTTTTATTTGTCTGCAGGC+TGG + chr1.1:60363641-60363660 MS.gene005149:intron 35.0%
!! TTTTTATTTGTCTGCAGGCT+GGG + chr1.1:60363642-60363661 MS.gene005149:intron 35.0%
!!! GGATGATGGGTTTTTACATA+TGG + chr1.1:60363004-60363023 MS.gene005149:intron 35.0%
!!! TTTTTTGACATGTTTGTCCG+TGG + chr1.1:60362113-60362132 MS.gene005149:intron 35.0%
AAACCCATCGTTTAAGTGTC+GGG - chr1.1:60363063-60363082 None:intergenic 40.0%
ATGAACACTTCCGTAAGCAT+TGG + chr1.1:60361878-60361897 MS.gene005149:CDS 40.0%
ATGGCTCAACACTTAAACGA+TGG + chr1.1:60363023-60363042 MS.gene005149:intron 40.0%
ATGGGCTTGTAGATTTGTGT+TGG + chr1.1:60362523-60362542 MS.gene005149:intron 40.0%
ATGGTCAACAGAAATGCCAA+TGG - chr1.1:60363401-60363420 None:intergenic 40.0%
ATTGCTGCTAGGGTTGAAAT+AGG + chr1.1:60363590-60363609 MS.gene005149:intron 40.0%
GAAAACATACAAGGCCAAGT+TGG + chr1.1:60363471-60363490 MS.gene005149:CDS 40.0%
GGCAGAACTATGTCAAAACA+TGG + chr1.1:60361899-60361918 MS.gene005149:CDS 40.0%
GGGTTTATACACATGGATGA+TGG + chr1.1:60362990-60363009 MS.gene005149:intron 40.0%
TACAACATGAAACTTCGTGC+CGG + chr1.1:60362415-60362434 MS.gene005149:CDS 40.0%
TCAACAGAAATGCCAATGGT+TGG - chr1.1:60363397-60363416 None:intergenic 40.0%
TGATACCATCATTGCTGCTA+GGG + chr1.1:60363580-60363599 MS.gene005149:intron 40.0%
TGGCTCAACACTTAAACGAT+GGG + chr1.1:60363024-60363043 MS.gene005149:intron 40.0%
TTGATACCATCATTGCTGCT+AGG + chr1.1:60363579-60363598 MS.gene005149:intron 40.0%
! ATCATACTTGCCGATTGTGA+GGG + chr1.1:60363709-60363728 MS.gene005149:CDS 40.0%
! CATAGTTCTGCCAATGCTTA+CGG - chr1.1:60361891-60361910 None:intergenic 40.0%
!! GCAGGGATGCTTATTTTCAT+AGG - chr1.1:60362611-60362630 None:intergenic 40.0%
!! GCCAACTGTTGAACTTGTTA+AGG + chr1.1:60363736-60363755 MS.gene005149:CDS 40.0%
!! GCTTACGGAAGTGTTCATTT+GGG - chr1.1:60361876-60361895 None:intergenic 40.0%
!! TGCTTACGGAAGTGTTCATT+TGG - chr1.1:60361877-60361896 None:intergenic 40.0%
!! TTTTATTTGTCTGCAGGCTG+GGG + chr1.1:60363643-60363662 MS.gene005149:intron 40.0%
!!! TTGTTTTTATGACAGGCTGC+CGG + chr1.1:60363352-60363371 MS.gene005149:intron 40.0%
AATGGTTGGAGCAAGCTTCT+TGG - chr1.1:60363383-60363402 None:intergenic 45.0%
ACAACATGAAACTTCGTGCC+GGG + chr1.1:60362416-60362435 MS.gene005149:CDS 45.0%
ATGACCCGACACTTAAACGA+TGG + chr1.1:60363056-60363075 MS.gene005149:intron 45.0%
ATGGTTGGAGCAAGCTTCTT+GGG - chr1.1:60363382-60363401 None:intergenic 45.0%
CAATCGGCAAGTATGATCCT+TGG - chr1.1:60363706-60363725 None:intergenic 45.0%
CATGGTTCAATCAACCAGCT+AGG + chr1.1:60361917-60361936 MS.gene005149:CDS 45.0%
CCTTGGGAAAACAACCAACT+TGG - chr1.1:60363488-60363507 None:intergenic 45.0%
GCAGAGGCTGAAAACATACA+AGG + chr1.1:60363462-60363481 MS.gene005149:CDS 45.0%
GCAGTTTGACCGTGAACAAT+TGG - chr1.1:60362391-60362410 None:intergenic 45.0%
GGGCTACAAAAATCACAGCA+CGG - chr1.1:60362315-60362334 None:intergenic 45.0%
GTATGATCCTTGGACTTGTG+TGG - chr1.1:60363696-60363715 None:intergenic 45.0%
TGACCCGACACTTAAACGAT+GGG + chr1.1:60363057-60363076 MS.gene005149:intron 45.0%
TTCAACCCTAGCAGCAATGA+TGG - chr1.1:60363588-60363607 None:intergenic 45.0%
! AAGAAGCTTGCTCCAACCAT+TGG + chr1.1:60363382-60363401 MS.gene005149:CDS 45.0%
! GATCATACTTGCCGATTGTG+AGG + chr1.1:60363708-60363727 MS.gene005149:CDS 45.0%
! TCTTCACTGCCTTCTTTTGG+CGG - chr1.1:60362336-60362355 None:intergenic 45.0%
! TTTTGTAGCCCGCCAAAAGA+AGG + chr1.1:60362324-60362343 MS.gene005149:intron 45.0%
!! CCTTTGAGGCCAATTGTTCA+CGG + chr1.1:60362379-60362398 MS.gene005149:CDS 45.0%
!!! CCAAGTTGGTTGTTTTCCCA+AGG + chr1.1:60363485-60363504 MS.gene005149:CDS 45.0%
ACAAGCGTCATTTGGGTGCT+AGG + chr1.1:60363816-60363835 MS.gene005149:CDS 50.0%
AGCAAGCTTCTTGGGGATAC+CGG - chr1.1:60363374-60363393 None:intergenic 50.0%
AGCACCCAAATGACGCTTGT+TGG - chr1.1:60363816-60363835 None:intergenic 50.0%
ATCAACCAGCTAGGAAGACC+AGG + chr1.1:60361926-60361945 MS.gene005149:CDS 50.0%
ATGAAACTTCGTGCCGGGAA+AGG + chr1.1:60362421-60362440 MS.gene005149:CDS 50.0%
ATTTGGGTGCTAGGCTCAAG+AGG + chr1.1:60363825-60363844 MS.gene005149:CDS 50.0%
CCTCCAAAGAACGGTTCTTG+CGG - chr1.1:60363426-60363445 None:intergenic 50.0%
CGCAAGAACCGTTCTTTGGA+GGG + chr1.1:60363424-60363443 MS.gene005149:CDS 50.0%
CGCACCAACAAGCGTCATTT+GGG + chr1.1:60363809-60363828 MS.gene005149:CDS 50.0%
CTTGCAGACCCTCCAAAGAA+CGG - chr1.1:60363435-60363454 None:intergenic 50.0%
GCTAATGCCACACAAGTCCA+AGG + chr1.1:60363686-60363705 MS.gene005149:CDS 50.0%
GTAATTACCCAAGCGTCTCC+TGG - chr1.1:60361947-60361966 None:intergenic 50.0%
GTCTGCAAGCTAATGTGCAG+AGG + chr1.1:60363446-60363465 MS.gene005149:CDS 50.0%
GTGGCATTAGCAAGTTCCTC+AGG - chr1.1:60363677-60363696 None:intergenic 50.0%
TGGTTGGAGCAAGCTTCTTG+GGG - chr1.1:60363381-60363400 None:intergenic 50.0%
TTTGGGTGCTAGGCTCAAGA+GGG + chr1.1:60363826-60363845 MS.gene005149:CDS 50.0%
! AATTGGCCTCAAAGGTCCAG+CGG - chr1.1:60362374-60362393 None:intergenic 50.0%
! AGGCAGTGAAGATTTTCCCC+CGG + chr1.1:60362344-60362363 MS.gene005149:CDS 50.0%
! CCGTGAACAATTGGCCTCAA+AGG - chr1.1:60362382-60362401 None:intergenic 50.0%
! CTTCACTGCCTTCTTTTGGC+GGG - chr1.1:60362335-60362354 None:intergenic 50.0%
! GTTGGCTTCTCCCTCACAAT+CGG - chr1.1:60363722-60363741 None:intergenic 50.0%
AAGAACGGTTCTTGCGGCGA+TGG - chr1.1:60363420-60363439 None:intergenic 55.0%
AGGAAGACCAGGAGACGCTT+GGG + chr1.1:60361937-60361956 MS.gene005149:CDS 55.0%
CCGCAAGAACCGTTCTTTGG+AGG + chr1.1:60363423-60363442 MS.gene005149:CDS 55.0%
GCGCACCAACAAGCGTCATT+TGG + chr1.1:60363808-60363827 MS.gene005149:CDS 55.0%
TAGGAAGACCAGGAGACGCT+TGG + chr1.1:60361936-60361955 MS.gene005149:CDS 55.0%
TCGCCGCAAGAACCGTTCTT+TGG + chr1.1:60363420-60363439 MS.gene005149:CDS 55.0%
GAGGGCTGCTGAGGCAGAAA+AGG + chr1.1:60363844-60363863 MS.gene005149:CDS 60.0%
TAGGCTCAAGAGGGCTGCTG+AGG + chr1.1:60363835-60363854 MS.gene005149:CDS 60.0%
TCAAAGGTCCAGCGGTTGGC+CGG - chr1.1:60362366-60362385 None:intergenic 60.0%
! CGTCTCCTGGTCTTCCTAGC+TGG - chr1.1:60361934-60361953 None:intergenic 60.0%
! GACGCTTGTTGGTGCGCTCA+AGG - chr1.1:60363805-60363824 None:intergenic 60.0%
AAGGCGCGCACGCAAGACCA+AGG + chr1.1:60363504-60363523 MS.gene005149:CDS 65.0%
GGCCAACCGCTGGACCTTTG+AGG + chr1.1:60362365-60362384 MS.gene005149:CDS 65.0%
GGCCTCAAAGGTCCAGCGGT+TGG - chr1.1:60362370-60362389 None:intergenic 65.0%
GGCTGGGGACTCTACACCTG+AGG + chr1.1:60363658-60363677 MS.gene005149:intron 65.0%
! AAAGGTCCAGCGGTTGGCCG+GGG - chr1.1:60362364-60362383 None:intergenic 65.0%
! ATTTTCCCCCGGCCAACCGC+TGG + chr1.1:60362355-60362374 MS.gene005149:CDS 65.0%
! CAAAGGTCCAGCGGTTGGCC+GGG - chr1.1:60362365-60362384 None:intergenic 65.0%
! TGGTCTTGCGTGCGCGCCTT+GGG - chr1.1:60363504-60363523 None:intergenic 65.0%
!! TTGGTCTTGCGTGCGCGCCT+TGG - chr1.1:60363505-60363524 None:intergenic 65.0%
! AAGGTCCAGCGGTTGGCCGG+GGG - chr1.1:60362363-60362382 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 60361850 60363880 60361850 ID=MS.gene005149
chr1.1 mRNA 60361850 60363880 60361850 ID=MS.gene005149.t1;Parent=MS.gene005149
chr1.1 exon 60361850 60361958 60361850 ID=MS.gene005149.t1.exon1;Parent=MS.gene005149.t1
chr1.1 CDS 60361850 60361958 60361850 ID=cds.MS.gene005149.t1;Parent=MS.gene005149.t1
chr1.1 exon 60362332 60362465 60362332 ID=MS.gene005149.t1.exon2;Parent=MS.gene005149.t1
chr1.1 CDS 60362332 60362465 60362332 ID=cds.MS.gene005149.t1;Parent=MS.gene005149.t1
chr1.1 exon 60363367 60363525 60363367 ID=MS.gene005149.t1.exon3;Parent=MS.gene005149.t1
chr1.1 CDS 60363367 60363525 60363367 ID=cds.MS.gene005149.t1;Parent=MS.gene005149.t1
chr1.1 exon 60363659 60363880 60363659 ID=MS.gene005149.t1.exon4;Parent=MS.gene005149.t1
chr1.1 CDS 60363659 60363880 60363659 ID=cds.MS.gene005149.t1;Parent=MS.gene005149.t1
Gene Sequence

>MS.gene005149

ATGGTGAAGCACAACAATGTTATCCCAAATGAACACTTCCGTAAGCATTGGCAGAACTATGTCAAAACATGGTTCAATCAACCAGCTAGGAAGACCAGGAGACGCTTGGGTAATTACCTATATTTTTACAACTTAATTATGCTAATTATTTTGCTTAATTTTAGTTTGAAATTTGTTCAAAAATAATTGCCTCATGTTTTTTGACATGTTTGGTCGTGTCTTAAATTGTTTGTTTGAATTAAAGTAGTGTTGTTGCTTCGTTTTTTTTTGACATGTTTGTCCGTGGCTTAAATTGTTTGTTTGAGTTATAGTAATGCTGTTTCGTTCATTTCTTTTGATATGTTCTGCAGTGTCTTGAATTATAGGTTTTCTGTTTGATTCATTTCTTTTGATGTGCTGTGTTGCGTCTTAAGTTGTTCGTTTGTATTATAGTATTATTATTTGCTTCATTTTTTTGAAATGCCGTGCTGTGATTTTTGTAGCCCGCCAAAAGAAGGCAGTGAAGATTTTCCCCCGGCCAACCGCTGGACCTTTGAGGCCAATTGTTCACGGTCAAACTGCTAAGTACAACATGAAACTTCGTGCCGGGAAAGGATTTTCTCTTGAAGAGTTGAAGGTAGTATAGCTTGTTGAACTTTAACTGTGGTCTTATGTTCTGTGTAGATGTTACTTTATGGGCTTGTAGATTTGTGTTGGTTATCTTGCTATAGATTCACTCTTCAATTATTGTTTTTACGCTAAAGACTAAATTGGAATATCCTATGAAAATAAGCATCCCTGCATTAGTTCTATCTAATATAATCATTGTCGTGGAAGAACTTATAATCTTTGTTTTCTTTGCTTTTACTTTGCTACACATGTTTATTTTTTTTTTTCATATGACTAATTGATTTCTGGGAATATTTTCACTTGTAAATTGTTTGATATTCAACTGTGCCCGAAAATAGATTAAACTGTAGGAAAGATCGTACGGCCTATATAGTCTTCAATTCTGTACTCTAAAACCATGTTTAGTAACTTGAGAGTAACCAATCATTTAAGAGTAACATATAGTTCTTGTAATGGGTAAACTCATTCTATGTCTTTATTATTCTGCTCGACACTTTTATGAGAAGTCTTTGCATATGACACTTAAATGATGGGTTTATACACATGGATGATGGGTTTTTACATATGGCTCAACACTTAAACGATGGGTTTTTACATATGACCCGACACTTAAACGATGGGTTTTTACATATGGCTAGACACTTTAATGATCGGTTTATACATATGGATGATGGTTTTTACATATGGCTCTACACTTTAATAATGGGTTTATACATATGGCTTGACACCAAGTTTTTGCATATGGCTATTTGATTTCTTAGAATATTTTCATATTATTAGTAACAATTCAATTGTGCCTGAATAAAAGTTGAACTCTAGAAAACCTCCAGACTTAATAGTCTTCAACTATATATCCATAAACTACATATTATAACTTGATTAGTGACCTACTTTTGTTTTTATGACAGGCTGCCGGTATCCCCAAGAAGCTTGCTCCAACCATTGGCATTTCTGTTGACCATCGCCGCAAGAACCGTTCTTTGGAGGGTCTGCAAGCTAATGTGCAGAGGCTGAAAACATACAAGGCCAAGTTGGTTGTTTTCCCAAGGCGCGCACGCAAGACCAAGGTAATATAAGAACCTCAATGATGATTTTAGTTTATGTATGCTTTTCCTTAGCTTTGATACCATCATTGCTGCTAGGGTTGAAATAGGAAGTATTAATCGGACAGTCAGTTGAATTATTTTTATTTGTCTGCAGGCTGGGGACTCTACACCTGAGGAACTTGCTAATGCCACACAAGTCCAAGGATCATACTTGCCGATTGTGAGGGAGAAGCCAACTGTTGAACTTGTTAAGGTTACAGATGAAATGAAGGCATTCAAAGCTTATTACAAGCTTCGCCTTGAGCGCACCAACAAGCGTCATTTGGGTGCTAGGCTCAAGAGGGCTGCTGAGGCAGAAAAGGAAGACAAGAAGTGA
Protein sequence

>MS.gene005149.t1

MVKHNNVIPNEHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTAKYNMKLRAGKGFSLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVVFPRRARKTKAGDSTPEELANATQVQGSYLPIVREKPTVELVKVTDEMKAFKAYYKLRLERTNKRHLGARLKRAAEAEKEDKK