AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84989

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84989.t1 MTR_7g111590 99.038 208 1 1 1 208 1 207 3.40e-150 415
MS.gene84989.t1 MTR_5g026750 98.558 208 2 1 1 208 1 207 1.23e-149 414
MS.gene84989.t1 MTR_7g111590 98.077 208 1 1 1 208 1 205 1.39e-148 411
MS.gene84989.t1 MTR_1g022165 97.596 208 4 1 1 208 1 207 3.02e-148 410
MS.gene84989.t1 MTR_8g071810 90.196 51 5 0 135 185 97 147 1.15e-26 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84989.t1 AT3G49010 86.979 192 24 1 2 193 1 191 1.80e-124 350
MS.gene84989.t1 AT3G49010 86.979 192 24 1 2 193 1 191 1.80e-124 350
MS.gene84989.t1 AT3G49010 86.979 192 24 1 2 193 1 191 1.80e-124 350
MS.gene84989.t1 AT3G49010 86.979 192 24 1 2 193 1 191 1.80e-124 350
MS.gene84989.t1 AT3G49010 86.979 192 24 1 2 193 1 191 1.80e-124 350
MS.gene84989.t1 AT3G49010 85.938 192 24 1 2 193 1 189 5.14e-123 346
MS.gene84989.t1 AT5G23900 85.027 187 27 1 2 188 1 186 9.41e-118 333
MS.gene84989.t1 AT3G48960 76.684 193 44 1 2 194 1 192 3.39e-107 306
MS.gene84989.t1 AT3G49010 60.938 192 21 2 2 193 1 138 1.11e-75 225

Find 59 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGTTTCATGTTGTATTTC+TGG 0.077465 5.2:+17734270 None:intergenic
AGATGAAATGAAGGCATTTA+AGG 0.173990 5.2:-17732613 MS.gene84989:CDS
CGTCTTCTTGTCTTTCTTGC+AGG 0.232556 5.2:+17734494 None:intergenic
AAGTTTCATGTTGTATTTCT+GGG 0.320845 5.2:+17734271 None:intergenic
ACCTTACGTCGTGCACGTCT+TGG 0.345863 5.2:+17732880 None:intergenic
GCGAACAAACAAACGCCATT+TGG 0.357834 5.2:-17732568 MS.gene84989:CDS
CGAACAAACAAACGCCATTT+GGG 0.361720 5.2:-17732567 MS.gene84989:CDS
CCTCTCAGGCCTATTGTTCA+TGG 0.384739 5.2:-17734299 MS.gene84989:CDS
CCTTACGTCGTGCACGTCTT+GGG 0.398368 5.2:+17732881 None:intergenic
TGGGTCTGTCCATGAACAAT+AGG 0.402566 5.2:+17734290 None:intergenic
GGCCTACAGCTGGTCCTCTC+AGG 0.405485 5.2:-17734313 MS.gene84989:CDS
AGAGGACCAGCTGTAGGCCT+TGG 0.408906 5.2:+17734317 None:intergenic
CTCGGCAGCCCTCTTCAGTC+TGG 0.408929 5.2:+17732542 None:intergenic
GAAATACAACATGAAACTTC+GGG 0.425475 5.2:-17734267 MS.gene84989:CDS
CTTCTCCCTTGAGGAGTTGA+AGG 0.436371 5.2:-17734234 MS.gene84989:intron
GTAGCATTTGCTAGTTCCTC+AGG 0.441712 5.2:+17732702 None:intergenic
TGCTTGCGGAAGTGTTCGTT+AGG 0.460343 5.2:+17734551 None:intergenic
TCTTCAGTCTGGCACCCAAA+TGG 0.461938 5.2:+17732553 None:intergenic
GATGGCTTCTCCCTCACAAT+TGG 0.470493 5.2:+17732657 None:intergenic
GAGGGCTGCCGAGGCAGAGA+AGG 0.474906 5.2:-17732532 MS.gene84989:CDS
CTTGTCTTCCTTCTCTGCCT+CGG 0.482926 5.2:+17732524 None:intergenic
ATGAAACTTCGGGCTGGTAA+AGG 0.485556 5.2:-17734257 MS.gene84989:CDS
TTCTTGTCTTTCTTGCAGGT+TGG 0.486579 5.2:+17734498 None:intergenic
TAAGATTACAGATGAAATGA+AGG 0.490511 5.2:-17732622 MS.gene84989:CDS
GAGGACCAGCTGTAGGCCTT+GGG 0.492897 5.2:+17734318 None:intergenic
AGAAATACAACATGAAACTT+CGG 0.496280 5.2:-17734268 MS.gene84989:CDS
CCCAAGACGTGCACGACGTA+AGG 0.500235 5.2:-17732881 MS.gene84989:CDS
GCAAATGCTACACAGGTTCA+AGG 0.515568 5.2:-17732690 MS.gene84989:CDS
TCGCCGCAAGAACAGATCCT+TGG 0.521821 5.2:-17732962 MS.gene84989:CDS
TCGACAGAAATGCCGATAGT+TGG 0.527583 5.2:+17732988 None:intergenic
AGAAAGACAAGAAGACGCTT+AGG 0.531399 5.2:-17734488 MS.gene84989:intron
TTCTTCAGCTCGTCAGAAGA+AGG 0.535500 5.2:-17734354 MS.gene84989:intron
TCTTGGGAAGACAACCAACT+TGG 0.536146 5.2:+17732897 None:intergenic
GTTGGCTTGCAGACCTTCCA+AGG 0.544997 5.2:+17732945 None:intergenic
ATCTTCCCAAGGCCTACAGC+TGG 0.552591 5.2:-17734323 MS.gene84989:CDS
ACGAACACTTCCGCAAGCAT+TGG 0.561260 5.2:-17734547 MS.gene84989:CDS
TACAACATGAAACTTCGGGC+TGG 0.571895 5.2:-17734263 MS.gene84989:CDS
TTCATACTTACCAATTGTGA+GGG 0.574179 5.2:-17732667 MS.gene84989:CDS
CAGACTGAAGAGGGCTGCCG+AGG 0.574750 5.2:-17732541 MS.gene84989:CDS
GCTTGCGGAAGTGTTCGTTA+GGG 0.583423 5.2:+17734552 None:intergenic
GTCTGCAAGCCAACGTGCAG+AGG 0.583501 5.2:-17732936 MS.gene84989:CDS
GAAGACATACAAGGCCAAGT+TGG 0.584845 5.2:-17732911 MS.gene84989:CDS
TGGTAAAGGCTTCTCCCTTG+AGG 0.585769 5.2:-17734243 MS.gene84989:CDS
GTTCATACTTACCAATTGTG+AGG 0.591073 5.2:-17732668 MS.gene84989:CDS
ATTTGGGTGCCAGACTGAAG+AGG 0.592370 5.2:-17732551 MS.gene84989:CDS
GGCTGGTGATTCCACTCCTG+AGG 0.595885 5.2:-17732718 MS.gene84989:CDS
GGCAAAACTATGTTAAGACA+TGG 0.603418 5.2:-17734526 MS.gene84989:CDS
ATCTTAACAAGCTCTACAGA+TGG 0.608105 5.2:+17732639 None:intergenic
TTTGGGTGCCAGACTGAAGA+GGG 0.608247 5.2:-17732550 MS.gene84989:CDS
ATTTGCTAGTTCCTCAGGAG+TGG 0.614969 5.2:+17732707 None:intergenic
CGCAAGAACAGATCCTTGGA+AGG 0.621747 5.2:-17732958 MS.gene84989:CDS
TGTCTTCAGCCTCTGCACGT+TGG 0.625495 5.2:+17732927 None:intergenic
GGAACTAGCAAATGCTACAC+AGG 0.641783 5.2:-17732697 MS.gene84989:CDS
ACGTGCACGACGTAAGGTCA+AGG 0.645040 5.2:-17732875 MS.gene84989:intron
AGGCTGTGAAGATCTTCCCA+AGG 0.645347 5.2:-17734334 MS.gene84989:CDS
CTTCCAAGGATCTGTTCTTG+CGG 0.647989 5.2:+17732959 None:intergenic
CCATGAACAATAGGCCTGAG+AGG 0.660778 5.2:+17734299 None:intergenic
GGCCTGAGAGGACCAGCTGT+AGG 0.663399 5.2:+17734311 None:intergenic
GCAGAGGCTGAAGACATACA+AGG 0.685449 5.2:-17732920 MS.gene84989:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTATAATAATATCATC+AGG + chr5.2:17733268-17733287 None:intergenic 10.0%
!! TTTAAAGAATATGTAATAAA+TGG - chr5.2:17733175-17733194 MS.gene84989:intron 10.0%
!! AAAAACAAACTCAATTAAAT+TGG + chr5.2:17733586-17733605 None:intergenic 15.0%
!!! ATTGCTGATAAATTTTAAAA+TGG - chr5.2:17734302-17734321 MS.gene84989:CDS 15.0%
!!! TATAATATCATTAGTGTTTT+CGG + chr5.2:17733845-17733864 None:intergenic 15.0%
!!! TTAATTGAGTTTGTTTTTTA+AGG - chr5.2:17733588-17733607 MS.gene84989:intron 15.0%
!!! TTTGATTTATTTGACATAAT+GGG - chr5.2:17732708-17732727 MS.gene84989:CDS 15.0%
!!! TTTTGATTTATTTGACATAA+TGG - chr5.2:17732707-17732726 MS.gene84989:CDS 15.0%
!!! TTTTTTCTATTTTACAATGT+AGG - chr5.2:17734056-17734075 MS.gene84989:intron 15.0%
!! TTAAAATTTATCAGCAATGA+TGG + chr5.2:17734300-17734319 None:intergenic 20.0%
!!! AACTATCAATTGATTCTATA+AGG + chr5.2:17733409-17733428 None:intergenic 20.0%
!!! AGCTATATGCTTTTAATATA+TGG - chr5.2:17734254-17734273 MS.gene84989:CDS 20.0%
!!! ATTCTTTAAAAATGAGAACA+TGG + chr5.2:17733165-17733184 None:intergenic 20.0%
!!! TTATAGAATCAATTGATAGT+TGG - chr5.2:17733408-17733427 MS.gene84989:intron 20.0%
!!! TTTTGATATAATTCATTGAC+CGG - chr5.2:17732905-17732924 MS.gene84989:CDS 20.0%
!!! TTTTTACTTTATCTTTTCGA+TGG - chr5.2:17734022-17734041 MS.gene84989:intron 20.0%
! AAGTTTCATGTTGTATTTCT+GGG + chr5.2:17732825-17732844 None:intergenic 25.0%
! AGAAATACAACATGAAACTT+CGG - chr5.2:17732825-17732844 MS.gene84989:intron 25.0%
! CTATATCACTATATAGAAAC+TGG - chr5.2:17733358-17733377 MS.gene84989:intron 25.0%
! GGAATGAAACTAAAAACAAA+AGG + chr5.2:17733388-17733407 None:intergenic 25.0%
! TAAGATTACAGATGAAATGA+AGG - chr5.2:17734471-17734490 MS.gene84989:intron 25.0%
! TCATCATATAAAACTTGATG+CGG - chr5.2:17733305-17733324 MS.gene84989:intron 25.0%
!! AAGAAATCATGGATTATACA+AGG + chr5.2:17733807-17733826 None:intergenic 25.0%
!! TTTTGCGTTATCTAAAAAGT+GGG - chr5.2:17732928-17732947 MS.gene84989:CDS 25.0%
ATAGGTAAAAACACTCCATA+TGG + chr5.2:17733551-17733570 None:intergenic 30.0%
CTACAATCTACATCTATACA+TGG - chr5.2:17733463-17733482 MS.gene84989:intron 30.0%
GAAATACAACATGAAACTTC+GGG - chr5.2:17732826-17732845 MS.gene84989:intron 30.0%
GAAGTTTCATGTTGTATTTC+TGG + chr5.2:17732826-17732845 None:intergenic 30.0%
GAATTAAAAGCTCGTAAAAC+CGG + chr5.2:17733678-17733697 None:intergenic 30.0%
GTGTATTAGCAAAGAAATCA+TGG + chr5.2:17733818-17733837 None:intergenic 30.0%
TGAGAACATGGTAATAATCA+AGG + chr5.2:17733153-17733172 None:intergenic 30.0%
TGGTACCAAAGTTAAGAAAA+AGG + chr5.2:17734280-17734299 None:intergenic 30.0%
TTCATACTTACCAATTGTGA+GGG - chr5.2:17734426-17734445 MS.gene84989:intron 30.0%
! AAATCATGGATTATACAAGG+AGG + chr5.2:17733804-17733823 None:intergenic 30.0%
! AATATCATTAGTGTTTTCGG+TGG + chr5.2:17733842-17733861 None:intergenic 30.0%
! CTTTTTAGATAACGCAAAAC+CGG + chr5.2:17732927-17732946 None:intergenic 30.0%
! GTTTTGCGTTATCTAAAAAG+TGG - chr5.2:17732927-17732946 MS.gene84989:CDS 30.0%
! TATGGCCTTTTTCTTAACTT+TGG - chr5.2:17734272-17734291 MS.gene84989:CDS 30.0%
!! AGATGAAATGAAGGCATTTA+AGG - chr5.2:17734480-17734499 MS.gene84989:intron 30.0%
!! TATGGAGTGTTTTTACCTAT+AGG - chr5.2:17733551-17733570 MS.gene84989:intron 30.0%
!!! AGTTTGTTTTTTAAGGCCTA+TGG - chr5.2:17733595-17733614 MS.gene84989:intron 30.0%
!!! TTTCCCTGTTTTTTATTTGC+AGG - chr5.2:17734354-17734373 MS.gene84989:intron 30.0%
ATCTTAACAAGCTCTACAGA+TGG + chr5.2:17734457-17734476 None:intergenic 35.0%
CAGCCTGCAAATAAAAAACA+GGG + chr5.2:17734360-17734379 None:intergenic 35.0%
CCTAAACGGTATAAGAGTTA+AGG + chr5.2:17733625-17733644 None:intergenic 35.0%
CCTTAACTCTTATACCGTTT+AGG - chr5.2:17733622-17733641 MS.gene84989:intron 35.0%
GACAGAACTGAATATGTAAC+AGG + chr5.2:17733907-17733926 None:intergenic 35.0%
GGCAAAACTATGTTAAGACA+TGG - chr5.2:17732567-17732586 MS.gene84989:CDS 35.0%
GTTCATACTTACCAATTGTG+AGG - chr5.2:17734425-17734444 MS.gene84989:intron 35.0%
TAAAAACACTCCATATGGAC+AGG + chr5.2:17733546-17733565 None:intergenic 35.0%
TACTAGATGCACTCAAACTA+AGG + chr5.2:17733965-17733984 None:intergenic 35.0%
! AAAAAGCTTGCTCCAACTAT+CGG - chr5.2:17734093-17734112 MS.gene84989:intron 35.0%
! ATAGTTGGAGCAAGCTTTTT+GGG + chr5.2:17734093-17734112 None:intergenic 35.0%
! TATTTTACAATGTAGGCTGC+AGG - chr5.2:17734063-17734082 MS.gene84989:intron 35.0%
! TTTTACCTTCAACTCCTCAA+GGG + chr5.2:17732867-17732886 None:intergenic 35.0%
AGAAAGACAAGAAGACGCTT+AGG - chr5.2:17732605-17732624 MS.gene84989:CDS 40.0%
CCAGCCTGCAAATAAAAAAC+AGG + chr5.2:17734361-17734380 None:intergenic 40.0%
CGAACAAACAAACGCCATTT+GGG - chr5.2:17734526-17734545 MS.gene84989:CDS 40.0%
GACATAGACCTAAACCTTGA+TGG + chr5.2:17733656-17733675 None:intergenic 40.0%
TCAAGGTTTAGGTCTATGTC+CGG - chr5.2:17733656-17733675 MS.gene84989:intron 40.0%
TTCTTGTCTTTCTTGCAGGT+TGG + chr5.2:17732598-17732617 None:intergenic 40.0%
! GATAGTTGGAGCAAGCTTTT+TGG + chr5.2:17734094-17734113 None:intergenic 40.0%
! GTTTTACCTTCAACTCCTCA+AGG + chr5.2:17732868-17732887 None:intergenic 40.0%
!! CATAGTTTTGCCAATGCTTG+CGG + chr5.2:17732559-17732578 None:intergenic 40.0%
!!! CCTGTTTTTTATTTGCAGGC+TGG - chr5.2:17734358-17734377 MS.gene84989:intron 40.0%
!!! TGTTTTTTAAGGCCTATGGC+TGG - chr5.2:17733599-17733618 MS.gene84989:intron 40.0%
AAACTTGATGCGGTGTGTCT+CGG - chr5.2:17733315-17733334 MS.gene84989:intron 45.0%
AACACTCCATATGGACAGGT+TGG + chr5.2:17733542-17733561 None:intergenic 45.0%
AACCCTGACCATCAAGGTTT+AGG - chr5.2:17733645-17733664 MS.gene84989:intron 45.0%
AAGTGACCAACCTGTCCATA+TGG - chr5.2:17733533-17733552 MS.gene84989:intron 45.0%
AATTGGCTAGCGCATCCTAT+AGG + chr5.2:17733569-17733588 None:intergenic 45.0%
CACCAATCTCCAATGTACGT+AGG - chr5.2:17733774-17733793 MS.gene84989:intron 45.0%
CACCTACGTACATTGGAGAT+TGG + chr5.2:17733779-17733798 None:intergenic 45.0%
CGTCTTCTTGTCTTTCTTGC+AGG + chr5.2:17732602-17732621 None:intergenic 45.0%
CTTCCAAGGATCTGTTCTTG+CGG + chr5.2:17734137-17734156 None:intergenic 45.0%
GAAGACATACAAGGCCAAGT+TGG - chr5.2:17734182-17734201 MS.gene84989:intron 45.0%
GCAAATGCTACACAGGTTCA+AGG - chr5.2:17734403-17734422 MS.gene84989:intron 45.0%
GCGAACAAACAAACGCCATT+TGG - chr5.2:17734525-17734544 MS.gene84989:CDS 45.0%
GGAACTAGCAAATGCTACAC+AGG - chr5.2:17734396-17734415 MS.gene84989:intron 45.0%
TAAGAGTTAAGGCCAGCCAT+AGG + chr5.2:17733614-17733633 None:intergenic 45.0%
TACAACATGAAACTTCGGGC+TGG - chr5.2:17732830-17732849 MS.gene84989:intron 45.0%
TCGACAGAAATGCCGATAGT+TGG + chr5.2:17734108-17734127 None:intergenic 45.0%
TCTTGGGAAGACAACCAACT+TGG + chr5.2:17734199-17734218 None:intergenic 45.0%
TGATGGTCAGGGTTCCTAAA+CGG + chr5.2:17733639-17733658 None:intergenic 45.0%
TGGGTCTGTCCATGAACAAT+AGG + chr5.2:17732806-17732825 None:intergenic 45.0%
TTCTTCAGCTCGTCAGAAGA+AGG - chr5.2:17732739-17732758 MS.gene84989:intron 45.0%
TTTAGGAACCCTGACCATCA+AGG - chr5.2:17733639-17733658 MS.gene84989:intron 45.0%
! AGACCTAAACCTTGATGGTC+AGG + chr5.2:17733651-17733670 None:intergenic 45.0%
! ATTTGCTAGTTCCTCAGGAG+TGG + chr5.2:17734389-17734408 None:intergenic 45.0%
! GACCTAAACCTTGATGGTCA+GGG + chr5.2:17733650-17733669 None:intergenic 45.0%
! GTAGCATTTGCTAGTTCCTC+AGG + chr5.2:17734394-17734413 None:intergenic 45.0%
!! ACAGGTTGGTCACTTGACAA+CGG + chr5.2:17733528-17733547 None:intergenic 45.0%
!! ATGAAACTTCGGGCTGGTAA+AGG - chr5.2:17732836-17732855 MS.gene84989:intron 45.0%
!!! AAATTTTAGATATTTATTTT+TGG - chr5.2:17732963-17732982 MS.gene84989:CDS 5.0%
ACGAACACTTCCGCAAGCAT+TGG - chr5.2:17732546-17732565 MS.gene84989:CDS 50.0%
AGGCTGTGAAGATCTTCCCA+AGG - chr5.2:17732759-17732778 MS.gene84989:intron 50.0%
ATTTGGGTGCCAGACTGAAG+AGG - chr5.2:17734542-17734561 MS.gene84989:CDS 50.0%
CCATGAACAATAGGCCTGAG+AGG + chr5.2:17732797-17732816 None:intergenic 50.0%
CCTCTCAGGCCTATTGTTCA+TGG - chr5.2:17732794-17732813 MS.gene84989:intron 50.0%
CGCAAGAACAGATCCTTGGA+AGG - chr5.2:17734135-17734154 MS.gene84989:intron 50.0%
CTTCTCCCTTGAGGAGTTGA+AGG - chr5.2:17732859-17732878 MS.gene84989:intron 50.0%
CTTGTCTTCCTTCTCTGCCT+CGG + chr5.2:17734572-17734591 None:intergenic 50.0%
GATGGCTTCTCCCTCACAAT+TGG + chr5.2:17734439-17734458 None:intergenic 50.0%
GCAGAGGCTGAAGACATACA+AGG - chr5.2:17734173-17734192 MS.gene84989:intron 50.0%
GGAGGTTCACCTACGTACAT+TGG + chr5.2:17733786-17733805 None:intergenic 50.0%
GGTGTGTCTCGGCATTTACA+TGG - chr5.2:17733326-17733345 MS.gene84989:intron 50.0%
TCTTCAGTCTGGCACCCAAA+TGG + chr5.2:17734543-17734562 None:intergenic 50.0%
TGGTAAAGGCTTCTCCCTTG+AGG - chr5.2:17732850-17732869 MS.gene84989:intron 50.0%
TTTGGGTGCCAGACTGAAGA+GGG - chr5.2:17734543-17734562 MS.gene84989:CDS 50.0%
! ACTTGACAACGGGTTTGTGC+TGG + chr5.2:17733517-17733536 None:intergenic 50.0%
!! CAGGTTGGTCACTTGACAAC+GGG + chr5.2:17733527-17733546 None:intergenic 50.0%
!! GCTTGCGGAAGTGTTCGTTA+GGG + chr5.2:17732544-17732563 None:intergenic 50.0%
!! TGCTTGCGGAAGTGTTCGTT+AGG + chr5.2:17732545-17732564 None:intergenic 50.0%
ACCTTACGTCGTGCACGTCT+TGG + chr5.2:17734216-17734235 None:intergenic 55.0%
ACGTGCACGACGTAAGGTCA+AGG - chr5.2:17734218-17734237 MS.gene84989:intron 55.0%
ATCTTCCCAAGGCCTACAGC+TGG - chr5.2:17732770-17732789 MS.gene84989:intron 55.0%
CCTTACGTCGTGCACGTCTT+GGG + chr5.2:17734215-17734234 None:intergenic 55.0%
TCGCCGCAAGAACAGATCCT+TGG - chr5.2:17734131-17734150 MS.gene84989:intron 55.0%
TGTCTTCAGCCTCTGCACGT+TGG + chr5.2:17734169-17734188 None:intergenic 55.0%
!! GTTGGCTTGCAGACCTTCCA+AGG + chr5.2:17734151-17734170 None:intergenic 55.0%
AGAGGACCAGCTGTAGGCCT+TGG + chr5.2:17732779-17732798 None:intergenic 60.0%
CCCAAGACGTGCACGACGTA+AGG - chr5.2:17734212-17734231 MS.gene84989:intron 60.0%
GAGGACCAGCTGTAGGCCTT+GGG + chr5.2:17732778-17732797 None:intergenic 60.0%
GGCTGGTGATTCCACTCCTG+AGG - chr5.2:17734375-17734394 MS.gene84989:intron 60.0%
GTCTGCAAGCCAACGTGCAG+AGG - chr5.2:17734157-17734176 MS.gene84989:intron 60.0%
CAGACTGAAGAGGGCTGCCG+AGG - chr5.2:17734552-17734571 MS.gene84989:CDS 65.0%
CTCGGCAGCCCTCTTCAGTC+TGG + chr5.2:17734554-17734573 None:intergenic 65.0%
GGCCTACAGCTGGTCCTCTC+AGG - chr5.2:17732780-17732799 MS.gene84989:intron 65.0%
GGCCTGAGAGGACCAGCTGT+AGG + chr5.2:17732785-17732804 None:intergenic 65.0%
GAGGGCTGCCGAGGCAGAGA+AGG - chr5.2:17734561-17734580 MS.gene84989:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 17732518 17734597 17732518 ID=MS.gene84989
chr5.2 mRNA 17732518 17734597 17732518 ID=MS.gene84989.t1;Parent=MS.gene84989
chr5.2 exon 17734489 17734597 17734489 ID=MS.gene84989.t1.exon1;Parent=MS.gene84989.t1
chr5.2 CDS 17734489 17734597 17734489 ID=cds.MS.gene84989.t1;Parent=MS.gene84989.t1
chr5.2 exon 17734235 17734368 17734235 ID=MS.gene84989.t1.exon2;Parent=MS.gene84989.t1
chr5.2 CDS 17734235 17734368 17734235 ID=cds.MS.gene84989.t1;Parent=MS.gene84989.t1
chr5.2 exon 17732876 17733037 17732876 ID=MS.gene84989.t1.exon3;Parent=MS.gene84989.t1
chr5.2 CDS 17732876 17733037 17732876 ID=cds.MS.gene84989.t1;Parent=MS.gene84989.t1
chr5.2 exon 17732518 17732739 17732518 ID=MS.gene84989.t1.exon4;Parent=MS.gene84989.t1
chr5.2 CDS 17732518 17732739 17732518 ID=cds.MS.gene84989.t1;Parent=MS.gene84989.t1
Gene Sequence

>MS.gene84989

ATGGTGAAGCATAACAATGTTATCCCTAACGAACACTTCCGCAAGCATTGGCAAAACTATGTTAAGACATGGTTTAACCAACCTGCAAGAAAGACAAGAAGACGCTTAGGTAATAATTATCTCTATAATAGTACTATTTTTTTGACTGATTCAGTTTTATGTATTGAAAATTTAAAATAAAAATGTTAATTTTGATTTATTTGACATAATGGGTTGTTGTATTCTTCAGCTCGTCAGAAGAAGGCTGTGAAGATCTTCCCAAGGCCTACAGCTGGTCCTCTCAGGCCTATTGTTCATGGACAGACCCAGAAATACAACATGAAACTTCGGGCTGGTAAAGGCTTCTCCCTTGAGGAGTTGAAGGTAAAACATCTATGTGATTTTTCTTTTTGATATAATTCATTGACCGGTTTTGCGTTATCTAAAAAGTGGGTTTGATTCTCTAAAATTTTAGATATTTATTTTTGGATATTGAAGCTGTTGTGTTTGTTTACGAAATCGAAAGTCACTAAAAAACAGTTATTGAAAATGATTAAGCTACTCAAAACAGCTTCTCGTTTGACGAAATCGAAAGTCACTAAAAAACATTATTGAAAATGATTAAGCTACTCAAAACAGCTTCTCGTTTGAAGCCTTGATTATTACCATGTTCTCATTTTTAAAGAATATGTAATAAATGGATGAAAACTTTTGAAAGTGTTTTTTTACAAACAAGCTCTTTGTGAAATTACAGCAACTTTGTCACTACCTGATGATATTATTATAATTTTAAAGATATAATCTAATCTCATCATATAAAACTTGATGCGGTGTGTCTCGGCATTTACATGGTCTTAGTAGCTATATCACTATATAGAAACTGGTGTTCCTTTTGTTTTTAGTTTCATTCCTTATAGAATCAATTGATAGTTGGCATAGTATTTTCTGTTTGATGTACTTTTGTGTCTACAATCTACATCTATACATGGAATTGCATTTGCAAAATCTCTCTTAATTCCAGCACAAACCCGTTGTCAAGTGACCAACCTGTCCATATGGAGTGTTTTTACCTATAGGATGCGCTAGCCAATTTAATTGAGTTTGTTTTTTAAGGCCTATGGCTGGCCTTAACTCTTATACCGTTTAGGAACCCTGACCATCAAGGTTTAGGTCTATGTCCGGTTTTACGAGCTTTTAATTCTTATCTAGCATGACGATCAAAATCAACTTTAGTTGTTACAACAACTTACATACAGTACATTATACTTGTGATGTTACACCAATCTCCAATGTACGTAGGTGAACCTCCTTGTATAATCCATGATTTCTTTGCTAATACACTCCACCGAAAACACTAATGATATTATACAGTTTGAGATTGAGTTCTCTGAATATTCTCTGTTGTGACCTGTTACATATTCAGTTCTGTCTAATTTTAGCTTCAAGATGATGAAAGAGTAAAAGACCTTAGTTTGAGTGCATCTAGTATAGAATATAACTATGTATCGTACTTTGATGTTCTGCTTTTTTACTTTATCTTTTCGATGGTTTATTTTTTATTTTTTCTATTTTACAATGTAGGCTGCAGGTATTCCCAAAAAGCTTGCTCCAACTATCGGCATTTCTGTCGATCATCGCCGCAAGAACAGATCCTTGGAAGGTCTGCAAGCCAACGTGCAGAGGCTGAAGACATACAAGGCCAAGTTGGTTGTCTTCCCAAGACGTGCACGACGTAAGGTCAAGGTAATGCAAATTGCAGCTATATGCTTTTAATATATGGCCTTTTTCTTAACTTTGGTACCATCATTGCTGATAAATTTTAAAATGGAAAAGTCGTGCATTTTTCTTAATTTCTTATTTCCCTGTTTTTTATTTGCAGGCTGGTGATTCCACTCCTGAGGAACTAGCAAATGCTACACAGGTTCAAGGTTCATACTTACCAATTGTGAGGGAGAAGCCATCTGTAGAGCTTGTTAAGATTACAGATGAAATGAAGGCATTTAAGGCTTATTACAAGCTTCGTCTTGAGCGAACAAACAAACGCCATTTGGGTGCCAGACTGAAGAGGGCTGCCGAGGCAGAGAAGGAAGACAAGAAGTGA
Protein sequence

>MS.gene84989.t1

MVKHNNVIPNEHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTQKYNMKLRAGKGFSLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVVFPRRARRKVKAGDSTPEELANATQVQGSYLPIVREKPSVELVKITDEMKAFKAYYKLRLERTNKRHLGARLKRAAEAEKEDKK