Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92940.t1 | XP_003626150.1 | 99.5 | 207 | 1 | 0 | 1 | 207 | 1 | 207 | 6.90E-109 | 403.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92940.t1 | P41127 | 87.4 | 206 | 26 | 0 | 2 | 207 | 1 | 206 | 1.1e-99 | 364.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92940.t1 | G7KWF6 | 99.5 | 207 | 1 | 0 | 1 | 207 | 1 | 207 | 4.9e-109 | 403.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene72826 | MS.gene92940 | PPI |
MS.gene050791 | MS.gene92940 | PPI |
MS.gene92940 | MS.gene72826 | PPI |
MS.gene70808 | MS.gene92940 | PPI |
MS.gene22784 | MS.gene92940 | PPI |
MS.gene005149 | MS.gene92940 | PPI |
MS.gene69925 | MS.gene92940 | PPI |
MS.gene072591 | MS.gene92940 | PPI |
MS.gene92940 | MS.gene84989 | PPI |
MS.gene92940 | MS.gene44018 | PPI |
MS.gene072589 | MS.gene92940 | PPI |
MS.gene028085 | MS.gene92940 | PPI |
MS.gene84989 | MS.gene92940 | PPI |
MS.gene44018 | MS.gene92940 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92940.t1 | MTR_7g111590 | 99.517 | 207 | 1 | 0 | 1 | 207 | 1 | 207 | 4.33e-152 | 420 |
MS.gene92940.t1 | MTR_5g026750 | 99.034 | 207 | 2 | 0 | 1 | 207 | 1 | 207 | 2.15e-151 | 418 |
MS.gene92940.t1 | MTR_1g022165 | 98.068 | 207 | 4 | 0 | 1 | 207 | 1 | 207 | 4.29e-150 | 415 |
MS.gene92940.t1 | MTR_7g111590 | 98.551 | 207 | 1 | 1 | 1 | 207 | 1 | 205 | 1.17e-148 | 411 |
MS.gene92940.t1 | MTR_8g071810 | 65.432 | 81 | 28 | 0 | 104 | 184 | 67 | 147 | 7.39e-28 | 103 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92940.t1 | AT3G49010 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.80e-126 | 355 |
MS.gene92940.t1 | AT3G49010 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.80e-126 | 355 |
MS.gene92940.t1 | AT3G49010 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.80e-126 | 355 |
MS.gene92940.t1 | AT3G49010 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.80e-126 | 355 |
MS.gene92940.t1 | AT3G49010 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.80e-126 | 355 |
MS.gene92940.t1 | AT3G49010 | 86.387 | 191 | 24 | 1 | 2 | 192 | 1 | 189 | 4.72e-123 | 347 |
MS.gene92940.t1 | AT5G23900 | 85.484 | 186 | 27 | 0 | 2 | 187 | 1 | 186 | 1.67e-119 | 338 |
MS.gene92940.t1 | AT3G48960 | 77.083 | 192 | 44 | 0 | 2 | 193 | 1 | 192 | 5.47e-109 | 311 |
MS.gene92940.t1 | AT3G49010 | 61.257 | 191 | 21 | 1 | 2 | 192 | 1 | 138 | 4.02e-78 | 231 |
Find 59 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTAGTTTCATGTTGTATTTC+TGG | 0.038558 | 5.4:+17671482 | None:intergenic |
AGATGAAATGAAGGCATTTA+AGG | 0.173990 | 5.4:-17670155 | MS.gene92940:CDS |
CGTCTTCTTGTCTTTCTTGC+AGG | 0.232556 | 5.4:+17671711 | None:intergenic |
TAGTTTCATGTTGTATTTCT+GGG | 0.262590 | 5.4:+17671483 | None:intergenic |
TCGCCGCAAGAACCGATCTT+TGG | 0.321210 | 5.4:-17670502 | MS.gene92940:CDS |
TTGACCTTGCGTGCACGTCT+TGG | 0.342253 | 5.4:+17670420 | None:intergenic |
GCGAACAAACAAACGCCATT+TGG | 0.357834 | 5.4:-17670110 | MS.gene92940:CDS |
CGAACAAACAAACGCCATTT+GGG | 0.361720 | 5.4:-17670109 | MS.gene92940:CDS |
TGACCTTGCGTGCACGTCTT+GGG | 0.387927 | 5.4:+17670421 | None:intergenic |
TGGGTCTGTCCATGAACAAT+AGG | 0.402566 | 5.4:+17671502 | None:intergenic |
CCTCTCAGGCCTATTGTTCA+TGG | 0.403035 | 5.4:-17671511 | MS.gene92940:CDS |
CTCGGCAGCCCTCTTCAGTC+TGG | 0.408929 | 5.4:+17670084 | None:intergenic |
AGAGGTCCAGCTGTAGGCCT+TGG | 0.411701 | 5.4:+17671529 | None:intergenic |
AGAAATACAACATGAAACTA+AGG | 0.423714 | 5.4:-17671480 | MS.gene92940:CDS |
CTTCTCCCTTGAGGAGTTGA+AGG | 0.436371 | 5.4:-17671446 | MS.gene92940:intron |
GTAGCATTTGCTAGTTCCTC+AGG | 0.441712 | 5.4:+17670244 | None:intergenic |
TGCTTACGGAAGTGTTCGTT+AGG | 0.456415 | 5.4:+17671768 | None:intergenic |
TCTTCAGTCTGGCACCCAAA+TGG | 0.461938 | 5.4:+17670095 | None:intergenic |
GGCCTACAGCTGGACCTCTC+AGG | 0.464622 | 5.4:-17671525 | MS.gene92940:CDS |
GATGGCTTCTCCCTCACAAT+TGG | 0.470493 | 5.4:+17670199 | None:intergenic |
GAGGGCTGCCGAGGCAGAGA+AGG | 0.474906 | 5.4:-17670074 | MS.gene92940:CDS |
CTTGTCTTCCTTCTCTGCCT+CGG | 0.482926 | 5.4:+17670066 | None:intergenic |
TTCTTGTCTTTCTTGCAGGT+TGG | 0.486579 | 5.4:+17671715 | None:intergenic |
TAAGATTACAGATGAAATGA+AGG | 0.490511 | 5.4:-17670164 | MS.gene92940:CDS |
GAGGTCCAGCTGTAGGCCTT+GGG | 0.492897 | 5.4:+17671530 | None:intergenic |
CTTGCAGACCTTCCAAAGAT+CGG | 0.495670 | 5.4:+17670490 | None:intergenic |
TTATTTACAATGTAGGCTGC+AGG | 0.497862 | 5.4:-17670570 | MS.gene92940:intron |
GCAAATGCTACACAGGTTCA+AGG | 0.515568 | 5.4:-17670232 | MS.gene92940:CDS |
TCGACAGAAATGCCGATAGT+TGG | 0.527583 | 5.4:+17670528 | None:intergenic |
AGAAAGACAAGAAGACGCTT+AGG | 0.531399 | 5.4:-17671705 | MS.gene92940:intron |
TTCTTCAGCTCGTCAGAAGA+AGG | 0.532934 | 5.4:-17671566 | MS.gene92940:intron |
ATGAAACTAAGGGCTGGTAA+AGG | 0.560135 | 5.4:-17671469 | MS.gene92940:CDS |
AAGACGTGCACGCAAGGTCA+AGG | 0.565249 | 5.4:-17670418 | MS.gene92940:intron |
TACAACATGAAACTAAGGGC+TGG | 0.568361 | 5.4:-17671475 | MS.gene92940:CDS |
CTTCCCAAGACGTGCACGCA+AGG | 0.568390 | 5.4:-17670424 | MS.gene92940:CDS |
TTCATACTTACCAATTGTGA+GGG | 0.574179 | 5.4:-17670209 | MS.gene92940:CDS |
CAGACTGAAGAGGGCTGCCG+AGG | 0.574750 | 5.4:-17670083 | MS.gene92940:CDS |
CGCAAGAACCGATCTTTGGA+AGG | 0.577563 | 5.4:-17670498 | MS.gene92940:CDS |
GTCTGCAAGCCAACGTGCAG+AGG | 0.583501 | 5.4:-17670476 | MS.gene92940:CDS |
TGGTAAAGGCTTCTCCCTTG+AGG | 0.585769 | 5.4:-17671455 | MS.gene92940:CDS |
TCTTGGGAAGACTACCAACT+TGG | 0.587079 | 5.4:+17670437 | None:intergenic |
GAAGACATACAAGGCCAAGT+TGG | 0.587284 | 5.4:-17670451 | MS.gene92940:CDS |
CTTCCAAAGATCGGTTCTTG+CGG | 0.587526 | 5.4:+17670499 | None:intergenic |
GTTCATACTTACCAATTGTG+AGG | 0.591073 | 5.4:-17670210 | MS.gene92940:CDS |
ACGAACACTTCCGTAAGCAC+TGG | 0.592021 | 5.4:-17671764 | MS.gene92940:CDS |
ATTTGGGTGCCAGACTGAAG+AGG | 0.592370 | 5.4:-17670093 | MS.gene92940:CDS |
GGCTGGTGATTCCACTCCTG+AGG | 0.595885 | 5.4:-17670260 | MS.gene92940:CDS |
GAAATACAACATGAAACTAA+GGG | 0.596413 | 5.4:-17671479 | MS.gene92940:CDS |
ATCTTAACAAGCTCTACAGA+TGG | 0.608105 | 5.4:+17670181 | None:intergenic |
TTTGGGTGCCAGACTGAAGA+GGG | 0.608247 | 5.4:-17670092 | MS.gene92940:CDS |
ATTTGCTAGTTCCTCAGGAG+TGG | 0.614969 | 5.4:+17670249 | None:intergenic |
TGTCTTCAGCCTCTGCACGT+TGG | 0.625495 | 5.4:+17670467 | None:intergenic |
GCTTACGGAAGTGTTCGTTA+GGG | 0.630904 | 5.4:+17671769 | None:intergenic |
GGAACTAGCAAATGCTACAC+AGG | 0.641783 | 5.4:-17670239 | MS.gene92940:CDS |
GGCAAAACTATGTTAAGACA+TGG | 0.642371 | 5.4:-17671743 | MS.gene92940:CDS |
GGCCTGAGAGGTCCAGCTGT+AGG | 0.645171 | 5.4:+17671523 | None:intergenic |
CCATGAACAATAGGCCTGAG+AGG | 0.663723 | 5.4:+17671511 | None:intergenic |
GCAGAGGCTGAAGACATACA+AGG | 0.685449 | 5.4:-17670460 | MS.gene92940:CDS |
TTCAGCTCGTCAGAAGAAGG+CGG | 0.701987 | 5.4:-17671563 | MS.gene92940:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAACTCAATTAAAT+TGG | + | chr5.4:17670768-17670787 | None:intergenic | 10.0% |
!!! | TTTAATTGAGTTTTTTTTTA+AGG | - | chr5.4:17670769-17670788 | MS.gene92940:intron | 10.0% |
!!! | TTTGATTTATTTGATATAAT+GGG | - | chr5.4:17670255-17670274 | MS.gene92940:CDS | 10.0% |
!!! | TTTTGATTTATTTGATATAA+TGG | - | chr5.4:17670254-17670273 | MS.gene92940:CDS | 10.0% |
!!! | AGTTATATGCTTTTAATATA+TGG | - | chr5.4:17671471-17671490 | MS.gene92940:CDS | 15.0% |
!!! | TTCTATTTTATTTACAATGT+AGG | - | chr5.4:17671275-17671294 | MS.gene92940:intron | 15.0% |
!! | AAATTAGACAGAATTGAATA+TGG | + | chr5.4:17671127-17671146 | None:intergenic | 20.0% |
!! | GCATTATTCTTAATTTCTTA+TGG | - | chr5.4:17671551-17671570 | MS.gene92940:CDS | 20.0% |
!!! | AAACTAAAGTTGATTTTTGA+TGG | + | chr5.4:17670894-17670913 | None:intergenic | 20.0% |
! | AAATTGCAAGTCACTAAAAT+CGG | - | chr5.4:17670574-17670593 | MS.gene92940:intron | 25.0% |
! | AAGAAATAAACCATCGAAAA+AGG | + | chr5.4:17671250-17671269 | None:intergenic | 25.0% |
! | AGAAATACAACATGAAACTA+AGG | - | chr5.4:17670372-17670391 | MS.gene92940:intron | 25.0% |
! | ATAGATAAAAACACTCCATA+TGG | + | chr5.4:17670733-17670752 | None:intergenic | 25.0% |
! | GAAATACAACATGAAACTAA+GGG | - | chr5.4:17670373-17670392 | MS.gene92940:intron | 25.0% |
! | TAAGATTACAGATGAAATGA+AGG | - | chr5.4:17671688-17671707 | MS.gene92940:intron | 25.0% |
! | TAGTTTCATGTTGTATTTCT+GGG | + | chr5.4:17670372-17670391 | None:intergenic | 25.0% |
! | TGGTAGCAAAATTAAGAAAA+AGG | + | chr5.4:17671497-17671516 | None:intergenic | 25.0% |
! | TTAGTTTCATGTTGTATTTC+TGG | + | chr5.4:17670373-17670392 | None:intergenic | 25.0% |
!!! | ACAACTAAAGTTGATTTTGA+TGG | + | chr5.4:17670935-17670954 | None:intergenic | 25.0% |
!!! | TATGGAGTGTTTTTATCTAT+AGG | - | chr5.4:17670733-17670752 | MS.gene92940:intron | 25.0% |
!!! | TTTTACTTTACCTTTTTCGA+TGG | - | chr5.4:17671237-17671256 | MS.gene92940:intron | 25.0% |
!!! | TTTTTTTTAAGGTCTATGTC+TGG | - | chr5.4:17670780-17670799 | MS.gene92940:intron | 25.0% |
AAGAAATCATGGATCATACA+AGG | + | chr5.4:17671013-17671032 | None:intergenic | 30.0% | |
AATTCCTGTACATCAATACA+TGG | - | chr5.4:17670644-17670663 | MS.gene92940:intron | 30.0% | |
AGATCACAACTGAGAATATT+CGG | + | chr5.4:17671101-17671120 | None:intergenic | 30.0% | |
AGCAATTCACTAAACTACAT+CGG | + | chr5.4:17670471-17670490 | None:intergenic | 30.0% | |
CGTTGCTGATAAATTTGTAA+AGG | - | chr5.4:17671518-17671537 | MS.gene92940:CDS | 30.0% | |
GATAAAAGAGTAAAAGACCT+TGG | - | chr5.4:17671159-17671178 | MS.gene92940:intron | 30.0% | |
GTGTATAAGCAAAGAAATCA+TGG | + | chr5.4:17671024-17671043 | None:intergenic | 30.0% | |
TACAAATTTATCAGCAACGA+TGG | + | chr5.4:17671517-17671536 | None:intergenic | 30.0% | |
TCGGAAAATCAAAATCACAT+AGG | + | chr5.4:17670452-17670471 | None:intergenic | 30.0% | |
TTCATACTTACCAATTGTGA+GGG | - | chr5.4:17671643-17671662 | MS.gene92940:intron | 30.0% | |
! | AAATCCATGTATTGATGTAC+AGG | + | chr5.4:17670651-17670670 | None:intergenic | 30.0% |
!! | AGATGAAATGAAGGCATTTA+AGG | - | chr5.4:17671697-17671716 | MS.gene92940:intron | 30.0% |
!! | ATAGTGTTTTCACTTTTCAG+TGG | + | chr5.4:17671048-17671067 | None:intergenic | 30.0% |
AAATCATGGATCATACAAGG+AGG | + | chr5.4:17671010-17671029 | None:intergenic | 35.0% | |
ATCTTAACAAGCTCTACAGA+TGG | + | chr5.4:17671674-17671693 | None:intergenic | 35.0% | |
CAGCCTGGAAATATAAAACA+GGG | + | chr5.4:17671577-17671596 | None:intergenic | 35.0% | |
GGCAAAACTATGTTAAGACA+TGG | - | chr5.4:17670109-17670128 | MS.gene92940:CDS | 35.0% | |
GTTCATACTTACCAATTGTG+AGG | - | chr5.4:17671642-17671661 | MS.gene92940:intron | 35.0% | |
TAAAAACACTCCATATGGAC+AGG | + | chr5.4:17670728-17670747 | None:intergenic | 35.0% | |
TATGTCTGGCATTAATCGTA+TGG | - | chr5.4:17670794-17670813 | MS.gene92940:intron | 35.0% | |
TTATTTACAATGTAGGCTGC+AGG | - | chr5.4:17671282-17671301 | MS.gene92940:intron | 35.0% | |
! | AAAAAGCTTGCTCCAACTAT+CGG | - | chr5.4:17671312-17671331 | MS.gene92940:intron | 35.0% |
! | ATAGTTGGAGCAAGCTTTTT+GGG | + | chr5.4:17671312-17671331 | None:intergenic | 35.0% |
! | ATTTTACCTTCAACTCCTCA+AGG | + | chr5.4:17670415-17670434 | None:intergenic | 35.0% |
! | TTTTACCTTCAACTCCTCAA+GGG | + | chr5.4:17670414-17670433 | None:intergenic | 35.0% |
!!! | AACTGGTTTTGATGCTCTTT+TGG | - | chr5.4:17670517-17670536 | MS.gene92940:CDS | 35.0% |
ACCATCAAGGTTTAGGTCTA+TGG | - | chr5.4:17670832-17670851 | MS.gene92940:intron | 40.0% | |
AGAAAGACAAGAAGACGCTT+AGG | - | chr5.4:17670147-17670166 | MS.gene92940:CDS | 40.0% | |
CCAGCCTGGAAATATAAAAC+AGG | + | chr5.4:17671578-17671597 | None:intergenic | 40.0% | |
CGAACAAACAAACGCCATTT+GGG | - | chr5.4:17671743-17671762 | MS.gene92940:CDS | 40.0% | |
GCTACGCATTATCAGAAAAC+TGG | - | chr5.4:17670500-17670519 | MS.gene92940:CDS | 40.0% | |
TACAACATGAAACTAAGGGC+TGG | - | chr5.4:17670377-17670396 | MS.gene92940:intron | 40.0% | |
TACTAGATGCACTCAAACCA+AGG | + | chr5.4:17671179-17671198 | None:intergenic | 40.0% | |
TGGTTTGAGTGCATCTAGTA+TGG | - | chr5.4:17671179-17671198 | MS.gene92940:intron | 40.0% | |
TTCTTGTCTTTCTTGCAGGT+TGG | + | chr5.4:17670140-17670159 | None:intergenic | 40.0% | |
TTTAAGAACCCTGACCATCA+AGG | - | chr5.4:17670819-17670838 | MS.gene92940:intron | 40.0% | |
! | ATGAAACTAAGGGCTGGTAA+AGG | - | chr5.4:17670383-17670402 | MS.gene92940:intron | 40.0% |
! | CCTGTTTTATATTTCCAGGC+TGG | - | chr5.4:17671575-17671594 | MS.gene92940:intron | 40.0% |
! | GATAGTTGGAGCAAGCTTTT+TGG | + | chr5.4:17671313-17671332 | None:intergenic | 40.0% |
! | TGGCCCTGTTTTATATTTCC+AGG | - | chr5.4:17671571-17671590 | MS.gene92940:intron | 40.0% |
!! | CATAGTTTTGCCAGTGCTTA+CGG | + | chr5.4:17670101-17670120 | None:intergenic | 40.0% |
AACACTCCATATGGACAGGT+TGG | + | chr5.4:17670724-17670743 | None:intergenic | 45.0% | |
AACCCTGACCATCAAGGTTT+AGG | - | chr5.4:17670825-17670844 | MS.gene92940:intron | 45.0% | |
AAGTGACCAACCTGTCCATA+TGG | - | chr5.4:17670715-17670734 | MS.gene92940:intron | 45.0% | |
CGTCTTCTTGTCTTTCTTGC+AGG | + | chr5.4:17670144-17670163 | None:intergenic | 45.0% | |
CTTGCAGACCTTCCAAAGAT+CGG | + | chr5.4:17671365-17671384 | None:intergenic | 45.0% | |
GAAGACATACAAGGCCAAGT+TGG | - | chr5.4:17671401-17671420 | MS.gene92940:intron | 45.0% | |
GCAAATGCTACACAGGTTCA+AGG | - | chr5.4:17671620-17671639 | MS.gene92940:intron | 45.0% | |
GCCATAGACCTAAACCTTGA+TGG | + | chr5.4:17670836-17670855 | None:intergenic | 45.0% | |
GCGAACAAACAAACGCCATT+TGG | - | chr5.4:17671742-17671761 | MS.gene92940:CDS | 45.0% | |
GGAACTAGCAAATGCTACAC+AGG | - | chr5.4:17671613-17671632 | MS.gene92940:intron | 45.0% | |
TACCTGCGTACATTGGAGAT+TGG | + | chr5.4:17670987-17671006 | None:intergenic | 45.0% | |
TCAAGGTTTAGGTCTATGGC+TGG | - | chr5.4:17670836-17670855 | MS.gene92940:intron | 45.0% | |
TCGACAGAAATGCCGATAGT+TGG | + | chr5.4:17671327-17671346 | None:intergenic | 45.0% | |
TCTTGGGAAGACTACCAACT+TGG | + | chr5.4:17671418-17671437 | None:intergenic | 45.0% | |
TGGGTCTGTCCATGAACAAT+AGG | + | chr5.4:17670353-17670372 | None:intergenic | 45.0% | |
TTCTTCAGCTCGTCAGAAGA+AGG | - | chr5.4:17670286-17670305 | MS.gene92940:intron | 45.0% | |
! | ACTTGACAACGGGTTTGTAC+AGG | + | chr5.4:17670699-17670718 | None:intergenic | 45.0% |
! | AGACCTAAACCTTGATGGTC+AGG | + | chr5.4:17670831-17670850 | None:intergenic | 45.0% |
! | ATTTGCTAGTTCCTCAGGAG+TGG | + | chr5.4:17671606-17671625 | None:intergenic | 45.0% |
! | CTTCCAAAGATCGGTTCTTG+CGG | + | chr5.4:17671356-17671375 | None:intergenic | 45.0% |
! | GACCTAAACCTTGATGGTCA+GGG | + | chr5.4:17670830-17670849 | None:intergenic | 45.0% |
! | GTAGCATTTGCTAGTTCCTC+AGG | + | chr5.4:17671611-17671630 | None:intergenic | 45.0% |
!! | ACAGGTTGGTCACTTGACAA+CGG | + | chr5.4:17670710-17670729 | None:intergenic | 45.0% |
!! | GCTTACGGAAGTGTTCGTTA+GGG | + | chr5.4:17670086-17670105 | None:intergenic | 45.0% |
!! | TGCTTACGGAAGTGTTCGTT+AGG | + | chr5.4:17670087-17670106 | None:intergenic | 45.0% |
ACGAACACTTCCGTAAGCAC+TGG | - | chr5.4:17670088-17670107 | MS.gene92940:CDS | 50.0% | |
ATTTGGGTGCCAGACTGAAG+AGG | - | chr5.4:17671759-17671778 | MS.gene92940:CDS | 50.0% | |
CACCAATCTCCAATGTACGC+AGG | - | chr5.4:17670982-17671001 | MS.gene92940:intron | 50.0% | |
CCATGAACAATAGGCCTGAG+AGG | + | chr5.4:17670344-17670363 | None:intergenic | 50.0% | |
CCTCTCAGGCCTATTGTTCA+TGG | - | chr5.4:17670341-17670360 | MS.gene92940:intron | 50.0% | |
CGCAAGAACCGATCTTTGGA+AGG | - | chr5.4:17671354-17671373 | MS.gene92940:intron | 50.0% | |
CTTCTCCCTTGAGGAGTTGA+AGG | - | chr5.4:17670406-17670425 | MS.gene92940:intron | 50.0% | |
CTTGTCTTCCTTCTCTGCCT+CGG | + | chr5.4:17671789-17671808 | None:intergenic | 50.0% | |
GATGGCTTCTCCCTCACAAT+TGG | + | chr5.4:17671656-17671675 | None:intergenic | 50.0% | |
GCAGAGGCTGAAGACATACA+AGG | - | chr5.4:17671392-17671411 | MS.gene92940:intron | 50.0% | |
TCTTCAGTCTGGCACCCAAA+TGG | + | chr5.4:17671760-17671779 | None:intergenic | 50.0% | |
TGGTAAAGGCTTCTCCCTTG+AGG | - | chr5.4:17670397-17670416 | MS.gene92940:intron | 50.0% | |
TTCAGCTCGTCAGAAGAAGG+CGG | - | chr5.4:17670289-17670308 | MS.gene92940:intron | 50.0% | |
TTTGGGTGCCAGACTGAAGA+GGG | - | chr5.4:17671760-17671779 | MS.gene92940:CDS | 50.0% | |
! | AGGCGGTGAAGATTTTCCCA+AGG | - | chr5.4:17670306-17670325 | MS.gene92940:intron | 50.0% |
! | ATTTTCCCAAGGCCTACAGC+TGG | - | chr5.4:17670317-17670336 | MS.gene92940:intron | 50.0% |
!! | AAGGAGGTACCTGCGTACAT+TGG | + | chr5.4:17670994-17671013 | None:intergenic | 50.0% |
!! | CAGGTTGGTCACTTGACAAC+GGG | + | chr5.4:17670709-17670728 | None:intergenic | 50.0% |
AAGACGTGCACGCAAGGTCA+AGG | - | chr5.4:17671434-17671453 | MS.gene92940:intron | 55.0% | |
TCGCCGCAAGAACCGATCTT+TGG | - | chr5.4:17671350-17671369 | MS.gene92940:intron | 55.0% | |
TGACCTTGCGTGCACGTCTT+GGG | + | chr5.4:17671434-17671453 | None:intergenic | 55.0% | |
TGTCTTCAGCCTCTGCACGT+TGG | + | chr5.4:17671388-17671407 | None:intergenic | 55.0% | |
TTGACCTTGCGTGCACGTCT+TGG | + | chr5.4:17671435-17671454 | None:intergenic | 55.0% | |
AGAGGTCCAGCTGTAGGCCT+TGG | + | chr5.4:17670326-17670345 | None:intergenic | 60.0% | |
CAGGAGTGGAATCACCAGCC+TGG | + | chr5.4:17671592-17671611 | None:intergenic | 60.0% | |
CTTCCCAAGACGTGCACGCA+AGG | - | chr5.4:17671428-17671447 | MS.gene92940:intron | 60.0% | |
GAGGTCCAGCTGTAGGCCTT+GGG | + | chr5.4:17670325-17670344 | None:intergenic | 60.0% | |
GGCTGGTGATTCCACTCCTG+AGG | - | chr5.4:17671592-17671611 | MS.gene92940:intron | 60.0% | |
GTCTGCAAGCCAACGTGCAG+AGG | - | chr5.4:17671376-17671395 | MS.gene92940:intron | 60.0% | |
CAGACTGAAGAGGGCTGCCG+AGG | - | chr5.4:17671769-17671788 | MS.gene92940:CDS | 65.0% | |
CTCGGCAGCCCTCTTCAGTC+TGG | + | chr5.4:17671771-17671790 | None:intergenic | 65.0% | |
GGCCTACAGCTGGACCTCTC+AGG | - | chr5.4:17670327-17670346 | MS.gene92940:intron | 65.0% | |
GGCCTGAGAGGTCCAGCTGT+AGG | + | chr5.4:17670332-17670351 | None:intergenic | 65.0% | |
GAGGGCTGCCGAGGCAGAGA+AGG | - | chr5.4:17671778-17671797 | MS.gene92940:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 17670060 | 17671814 | 17670060 | ID=MS.gene92940 |
chr5.4 | mRNA | 17670060 | 17671814 | 17670060 | ID=MS.gene92940.t1;Parent=MS.gene92940 |
chr5.4 | exon | 17671706 | 17671814 | 17671706 | ID=MS.gene92940.t1.exon1;Parent=MS.gene92940.t1 |
chr5.4 | CDS | 17671706 | 17671814 | 17671706 | ID=cds.MS.gene92940.t1;Parent=MS.gene92940.t1 |
chr5.4 | exon | 17671447 | 17671580 | 17671447 | ID=MS.gene92940.t1.exon2;Parent=MS.gene92940.t1 |
chr5.4 | CDS | 17671447 | 17671580 | 17671447 | ID=cds.MS.gene92940.t1;Parent=MS.gene92940.t1 |
chr5.4 | exon | 17670419 | 17670577 | 17670419 | ID=MS.gene92940.t1.exon3;Parent=MS.gene92940.t1 |
chr5.4 | CDS | 17670419 | 17670577 | 17670419 | ID=cds.MS.gene92940.t1;Parent=MS.gene92940.t1 |
chr5.4 | exon | 17670060 | 17670281 | 17670060 | ID=MS.gene92940.t1.exon4;Parent=MS.gene92940.t1 |
chr5.4 | CDS | 17670060 | 17670281 | 17670060 | ID=cds.MS.gene92940.t1;Parent=MS.gene92940.t1 |
Gene Sequence |
Protein sequence |