Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072589.t1 | XP_003626150.1 | 99 | 206 | 2 | 0 | 1 | 206 | 1 | 206 | 6.70E-108 | 400.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072589.t1 | P41127 | 87.3 | 205 | 26 | 0 | 2 | 206 | 1 | 205 | 1.7e-99 | 363.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072589.t1 | G7KWF6 | 99.0 | 206 | 2 | 0 | 1 | 206 | 1 | 206 | 4.8e-108 | 400.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene072589 | 0.865121 | 7.43E-65 | -1.69E-46 |
| MS.gene050134 | MS.gene072589 | 0.917003 | 9.00E-86 | -1.69E-46 |
| MS.gene050791 | MS.gene072589 | 0.984066 | 1.72E-159 | -1.69E-46 |
| MS.gene050912 | MS.gene072589 | 0.868438 | 6.53E-66 | -1.69E-46 |
| MS.gene051904 | MS.gene072589 | 0.81542 | 9.33E-52 | -1.69E-46 |
| MS.gene051984 | MS.gene072589 | 0.897457 | 1.38E-76 | -1.69E-46 |
| MS.gene052664 | MS.gene072589 | 0.827777 | 1.30E-54 | -1.69E-46 |
| MS.gene053224 | MS.gene072589 | 0.889706 | 1.91E-73 | -1.69E-46 |
| MS.gene055232 | MS.gene072589 | 0.844589 | 6.88E-59 | -1.69E-46 |
| MS.gene056917 | MS.gene072589 | 0.833433 | 5.35E-56 | -1.69E-46 |
| MS.gene057092 | MS.gene072589 | 0.838637 | 2.55E-57 | -1.69E-46 |
| MS.gene057272 | MS.gene072589 | 0.90776 | 3.58E-81 | -1.69E-46 |
| MS.gene057641 | MS.gene072589 | 0.83657 | 8.66E-57 | -1.69E-46 |
| MS.gene057643 | MS.gene072589 | 0.851463 | 8.73E-61 | -1.69E-46 |
| MS.gene060483 | MS.gene072589 | 0.844467 | 7.42E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072589 | MS.gene072591 | PPI |
| MS.gene028085 | MS.gene072589 | PPI |
| MS.gene072589 | MS.gene84989 | PPI |
| MS.gene072589 | MS.gene44018 | PPI |
| MS.gene072589 | MS.gene050791 | PPI |
| MS.gene072589 | MS.gene72826 | PPI |
| MS.gene072589 | MS.gene70808 | PPI |
| MS.gene072589 | MS.gene92940 | PPI |
| MS.gene072589 | MS.gene005149 | PPI |
| MS.gene072589 | MS.gene69925 | PPI |
| MS.gene22784 | MS.gene072589 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072589.t1 | MTR_7g111590 | 99.029 | 206 | 2 | 0 | 1 | 206 | 1 | 206 | 6.73e-150 | 416 |
| MS.gene072589.t1 | MTR_5g026750 | 98.544 | 206 | 3 | 0 | 1 | 206 | 1 | 206 | 2.96e-149 | 414 |
| MS.gene072589.t1 | MTR_1g022165 | 97.573 | 206 | 5 | 0 | 1 | 206 | 1 | 206 | 4.07e-148 | 411 |
| MS.gene072589.t1 | MTR_7g111590 | 98.058 | 206 | 2 | 1 | 1 | 206 | 1 | 204 | 9.32e-147 | 408 |
| MS.gene072589.t1 | MTR_8g071810 | 64.198 | 81 | 29 | 0 | 104 | 184 | 67 | 147 | 9.25e-27 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072589.t1 | AT3G49010 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 1.53e-125 | 354 |
| MS.gene072589.t1 | AT3G49010 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 1.53e-125 | 354 |
| MS.gene072589.t1 | AT3G49010 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 1.53e-125 | 354 |
| MS.gene072589.t1 | AT3G49010 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 1.53e-125 | 354 |
| MS.gene072589.t1 | AT3G49010 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 1.53e-125 | 354 |
| MS.gene072589.t1 | AT3G49010 | 86.387 | 191 | 24 | 1 | 2 | 192 | 1 | 189 | 3.03e-122 | 346 |
| MS.gene072589.t1 | AT5G23900 | 85.484 | 186 | 27 | 0 | 2 | 187 | 1 | 186 | 1.12e-118 | 337 |
| MS.gene072589.t1 | AT3G48960 | 77.083 | 192 | 44 | 0 | 2 | 193 | 1 | 192 | 3.56e-108 | 310 |
| MS.gene072589.t1 | AT3G49010 | 61.257 | 191 | 21 | 1 | 2 | 192 | 1 | 138 | 2.48e-77 | 230 |
Find 67 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGAAATGAAGGCATTTA+AGG | 0.167170 | 7.4:+4790633 | MS.gene072589:CDS |
| CGTCTTCTCGTCTTCCTTGC+AGG | 0.238053 | 7.4:-4788949 | None:intergenic |
| TTGACCTTGCGTGCACGTCT+TGG | 0.342253 | 7.4:-4790370 | None:intergenic |
| GCGAACAAACAAACGCCATT+TGG | 0.357834 | 7.4:+4790678 | MS.gene072589:CDS |
| TAGAGCATGGAAGCTAACTA+TGG | 0.359132 | 7.4:+4792623 | MS.gene072589:CDS |
| CGAACAAACAAACGCCATTT+GGG | 0.361720 | 7.4:+4790679 | MS.gene072589:CDS |
| AGTGGTCCAGCTGTAGGCCT+TGG | 0.374314 | 7.4:-4789119 | None:intergenic |
| TGCTTGCGGAAGTGTTCATT+AGG | 0.386045 | 7.4:-4788892 | None:intergenic |
| TGACCTTGCGTGCACGTCTT+GGG | 0.387927 | 7.4:-4790369 | None:intergenic |
| TGAGTCTGTCCATGAACAAT+AGG | 0.403921 | 7.4:-4789146 | None:intergenic |
| AGAAATACAACATGAAACTA+AGG | 0.404501 | 7.4:+4789168 | MS.gene072589:CDS |
| CTCGGCAGCCCTCTTCAGTC+TGG | 0.408929 | 7.4:-4790704 | None:intergenic |
| CCACTCAGGCCTATTGTTCA+TGG | 0.419917 | 7.4:+4789137 | MS.gene072589:CDS |
| CTTCTCCCTTGAGGAGTTGA+AGG | 0.436371 | 7.4:+4789202 | MS.gene072589:CDS |
| GTAGCATTTGCTAGTTCCTC+AGG | 0.441712 | 7.4:-4790544 | None:intergenic |
| TCTTCAGTCTGGCACCCAAA+TGG | 0.461938 | 7.4:-4790693 | None:intergenic |
| GCTTGCGGAAGTGTTCATTA+GGG | 0.463786 | 7.4:-4788891 | None:intergenic |
| TAAGATTACAAATGAAATGA+AGG | 0.465235 | 7.4:+4790624 | MS.gene072589:CDS |
| GATGGCTTCTCCCTCACAAT+TGG | 0.470493 | 7.4:-4790589 | None:intergenic |
| GAGGGCTGCCGAGGCAGAGA+AGG | 0.474906 | 7.4:+4790714 | MS.gene072589:CDS |
| CTTGTCTTCCTTCTCTGCCT+CGG | 0.482926 | 7.4:-4790722 | None:intergenic |
| GTGGTCCAGCTGTAGGCCTT+GGG | 0.485461 | 7.4:-4789118 | None:intergenic |
| TCGCCGCAAGAACCGATCCT+TGG | 0.500226 | 7.4:+4790288 | MS.gene072589:CDS |
| CTTGCAGACCTTCCAAGGAT+CGG | 0.513686 | 7.4:-4790300 | None:intergenic |
| GCAAATGCTACACAGGTTCA+AGG | 0.515568 | 7.4:+4790556 | MS.gene072589:CDS |
| TTCTCGTCTTCCTTGCAGGT+TGG | 0.518598 | 7.4:-4788945 | None:intergenic |
| TCGACAGAAATACCAATAGT+TGG | 0.524260 | 7.4:-4790262 | None:intergenic |
| TGTTTACCTTCAACTCCTCA+AGG | 0.536157 | 7.4:-4789208 | None:intergenic |
| GGTTCTCTCTCTTCTCCCAC+AGG | 0.540777 | 7.4:-4791816 | None:intergenic |
| GTTGGCTTGCAGACCTTCCA+AGG | 0.544997 | 7.4:-4790305 | None:intergenic |
| CTTCCCAAGACGTGCACGCA+AGG | 0.546682 | 7.4:+4790366 | MS.gene072589:CDS |
| ATGAACACTTCCGCAAGCAT+TGG | 0.548841 | 7.4:+4788896 | MS.gene072589:CDS |
| ATGAAACTAAGGGCTGGTAA+AGG | 0.560135 | 7.4:+4789179 | MS.gene072589:CDS |
| GAAATACAACATGAAACTAA+GGG | 0.563936 | 7.4:+4789169 | MS.gene072589:CDS |
| AGGAAGACGAGAAGACGCTT+AGG | 0.564086 | 7.4:+4788955 | MS.gene072589:CDS |
| TCTTGGGAAGACGACCAACT+TGG | 0.564678 | 7.4:-4790353 | None:intergenic |
| AAGACGTGCACGCAAGGTCA+AGG | 0.565249 | 7.4:+4790372 | MS.gene072589:CDS |
| TACAACATGAAACTAAGGGC+TGG | 0.568361 | 7.4:+4789173 | MS.gene072589:CDS |
| TTCATACTTACCAATTGTGA+GGG | 0.574179 | 7.4:+4790579 | MS.gene072589:CDS |
| CAGACTGAAGAGGGCTGCCG+AGG | 0.574750 | 7.4:+4790705 | MS.gene072589:CDS |
| CGCAAGAACCGATCCTTGGA+AGG | 0.582614 | 7.4:+4790292 | MS.gene072589:CDS |
| GTCTGCAAGCCAACGTGCAG+AGG | 0.583501 | 7.4:+4790314 | MS.gene072589:CDS |
| TACAGCGAGGAGATAGAGCA+TGG | 0.583522 | 7.4:+4792610 | MS.gene072589:intron |
| CTTCCAAGGATCGGTTCTTG+CGG | 0.585506 | 7.4:-4790291 | None:intergenic |
| TGGTAAAGGCTTCTCCCTTG+AGG | 0.585769 | 7.4:+4789193 | MS.gene072589:CDS |
| AGGCCTTGGGAAAATCTTCA+CGG | 0.587332 | 7.4:-4789105 | None:intergenic |
| GTTCATACTTACCAATTGTG+AGG | 0.591073 | 7.4:+4790578 | MS.gene072589:CDS |
| GTAGTCGACGTGTGTGCCTG+TGG | 0.592072 | 7.4:+4791800 | MS.gene072589:intron |
| ATTTGGGTGCCAGACTGAAG+AGG | 0.592370 | 7.4:+4790695 | MS.gene072589:CDS |
| GGCTGGTGATTCCACTCCTG+AGG | 0.595885 | 7.4:+4790528 | MS.gene072589:intron |
| GAAGACATACAAGGCCAAGT+TGG | 0.599063 | 7.4:+4790339 | MS.gene072589:CDS |
| GGCCTACAGCTGGACCACTC+AGG | 0.602263 | 7.4:+4789123 | MS.gene072589:CDS |
| ATCTTAACAAGCTCTACAGA+TGG | 0.608105 | 7.4:-4790607 | None:intergenic |
| TTTGGGTGCCAGACTGAAGA+GGG | 0.608247 | 7.4:+4790696 | MS.gene072589:CDS |
| AGAGCATGGAAGCTAACTAT+GGG | 0.609588 | 7.4:+4792624 | MS.gene072589:CDS |
| GAGAGAGAACCTAATGAACA+AGG | 0.612101 | 7.4:+4791828 | MS.gene072589:CDS |
| GGCAAAACTATGTCAAGACA+TGG | 0.612396 | 7.4:+4788917 | MS.gene072589:CDS |
| TTATTGGTCAGTGGAAGACT+CGG | 0.614232 | 7.4:-4792653 | None:intergenic |
| ATTTGCTAGTTCCTCAGGAG+TGG | 0.614969 | 7.4:-4790539 | None:intergenic |
| TAGTCGACGTGTGTGCCTGT+GGG | 0.618289 | 7.4:+4791801 | MS.gene072589:intron |
| TGTCTTCAGCCTCTGCACGT+TGG | 0.625495 | 7.4:-4790323 | None:intergenic |
| GTTTACCTTCAACTCCTCAA+GGG | 0.627618 | 7.4:-4789207 | None:intergenic |
| GGCCTGAGTGGTCCAGCTGT+AGG | 0.635974 | 7.4:-4789125 | None:intergenic |
| GGAACTAGCAAATGCTACAC+AGG | 0.641783 | 7.4:+4790549 | MS.gene072589:CDS |
| CATGGTTTAACCAACCTGCA+AGG | 0.654567 | 7.4:+4788935 | MS.gene072589:CDS |
| CCATGAACAATAGGCCTGAG+TGG | 0.655173 | 7.4:-4789137 | None:intergenic |
| GCAGAGGCTGAAGACATACA+AGG | 0.685449 | 7.4:+4790330 | MS.gene072589:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTATAATAATATCATC+AGG | - | chr7.4:4789565-4789584 | None:intergenic | 10.0% |
| !! | TAACATTTGTATTAAAAAAA+AGG | - | chr7.4:4791546-4791565 | None:intergenic | 10.0% |
| !! | AAAAACAAACTCAATTAAAT+TGG | - | chr7.4:4789750-4789769 | None:intergenic | 15.0% |
| !! | TTTAAGAATATGTAACAAAA+TGG | + | chr7.4:4789477-4789496 | MS.gene072589:intron | 15.0% |
| !!! | AAATTCTAGATATTTACTTT+TGG | + | chr7.4:4789312-4789331 | MS.gene072589:intron | 15.0% |
| !!! | TTAATTGAGTTTGTTTTTTA+AGG | + | chr7.4:4789752-4789771 | MS.gene072589:intron | 15.0% |
| !!! | TTTCTTCTATTTTATAATGT+AGG | + | chr7.4:4790213-4790232 | MS.gene072589:intron | 15.0% |
| !! | AAACTAAAAACTCTTAAAAC+CGG | - | chr7.4:4789847-4789866 | None:intergenic | 20.0% |
| !! | ATGTAAAAGTAAAATCATAG+TGG | + | chr7.4:4792120-4792139 | MS.gene072589:intron | 20.0% |
| !! | TAAGAAATAAACCATTGAAA+AGG | - | chr7.4:4790193-4790212 | None:intergenic | 20.0% |
| !! | TAAGATTACAAATGAAATGA+AGG | + | chr7.4:4790624-4790643 | MS.gene072589:CDS | 20.0% |
| !! | TTGTAAAGAATATAGGATAT+TGG | + | chr7.4:4791996-4792015 | MS.gene072589:intron | 20.0% |
| !!! | AAGAAATCATGGATTATATA+AGG | - | chr7.4:4789963-4789982 | None:intergenic | 20.0% |
| !!! | GCAATTTTTGTAAAGAATAT+AGG | + | chr7.4:4791989-4792008 | MS.gene072589:intron | 20.0% |
| !!! | TAGCATGTTTTATTTTTCAT+GGG | + | chr7.4:4790925-4790944 | MS.gene072589:intron | 20.0% |
| !!! | TATGACCTTTTTCTTAATTT+TGG | + | chr7.4:4790425-4790444 | MS.gene072589:intron | 20.0% |
| !!! | TTAGCATGTTTTATTTTTCA+TGG | + | chr7.4:4790924-4790943 | MS.gene072589:intron | 20.0% |
| !!! | TTTTAGCATTATCAAAAAAG+TGG | + | chr7.4:4789276-4789295 | MS.gene072589:intron | 20.0% |
| !!! | TTTTGATTGTGTTGTTTTAA+AGG | + | chr7.4:4791141-4791160 | MS.gene072589:intron | 20.0% |
| !!! | TTTTTACTTTACCTTTTCAA+TGG | + | chr7.4:4790179-4790198 | MS.gene072589:intron | 20.0% |
| ! | AAATCTACTTTAGTTGTTAC+AGG | + | chr7.4:4789886-4789905 | MS.gene072589:intron | 25.0% |
| ! | AAATTGCAAGTCACTAAAAA+CGG | + | chr7.4:4789375-4789394 | MS.gene072589:intron | 25.0% |
| ! | AACTAAAAACTCTTAAAACC+GGG | - | chr7.4:4789846-4789865 | None:intergenic | 25.0% |
| ! | AATACAAACACAGATTTATC+TGG | - | chr7.4:4791100-4791119 | None:intergenic | 25.0% |
| ! | AGAAATACAACATGAAACTA+AGG | + | chr7.4:4789168-4789187 | MS.gene072589:CDS | 25.0% |
| ! | ATAATAAGTTCGATCATACT+TGG | + | chr7.4:4791320-4791339 | MS.gene072589:intron | 25.0% |
| ! | ATAGGTAAAAATACTCCATA+AGG | - | chr7.4:4789715-4789734 | None:intergenic | 25.0% |
| ! | ATTCAAGAAAATAAGTCATG+TGG | - | chr7.4:4792345-4792364 | None:intergenic | 25.0% |
| ! | CATATGTAAATCAACAACTA+TGG | - | chr7.4:4792222-4792241 | None:intergenic | 25.0% |
| ! | GAAATACAACATGAAACTAA+GGG | + | chr7.4:4789169-4789188 | MS.gene072589:CDS | 25.0% |
| ! | GCATTATTCTTAATTTCTTC+TGG | + | chr7.4:4790487-4790506 | MS.gene072589:intron | 25.0% |
| ! | GTGTATAAGTAAAGAAATCA+TGG | - | chr7.4:4789974-4789993 | None:intergenic | 25.0% |
| ! | TCTTGCAATAACTATCATAA+GGG | - | chr7.4:4790784-4790803 | None:intergenic | 25.0% |
| ! | TTCAAATTTATCAGCAATGA+CGG | - | chr7.4:4790453-4790472 | None:intergenic | 25.0% |
| ! | TTCAAGAAAATAAGTCATGT+GGG | - | chr7.4:4792344-4792363 | None:intergenic | 25.0% |
| !! | AAATCATGGATTATATAAGG+AGG | - | chr7.4:4789960-4789979 | None:intergenic | 25.0% |
| !! | AATATGATTAGTGTTTTCAG+TGG | - | chr7.4:4789996-4790015 | None:intergenic | 25.0% |
| !! | ACAACTAAAGTAGATTTTGA+TGG | - | chr7.4:4789883-4789902 | None:intergenic | 25.0% |
| !! | TTTGATTTACTTGACTTGAT+GGG | + | chr7.4:4789052-4789071 | MS.gene072589:intron | 25.0% |
| !!! | AAATGAAATGAAGGCATTTA+AGG | + | chr7.4:4790633-4790652 | MS.gene072589:CDS | 25.0% |
| !!! | AGTATTTTTACCTATAGGAT+TGG | + | chr7.4:4789720-4789739 | MS.gene072589:intron | 25.0% |
| !!! | CATTTTTACATTGTTTTAGC+TGG | - | chr7.4:4791521-4791540 | None:intergenic | 25.0% |
| !!! | TATGGAGTATTTTTACCTAT+AGG | + | chr7.4:4789715-4789734 | MS.gene072589:intron | 25.0% |
| !!! | TTGTTAATCGTTTTTCCATA+TGG | + | chr7.4:4791566-4791585 | MS.gene072589:intron | 25.0% |
| ACCATGAGAAACAATAAACA+TGG | - | chr7.4:4791171-4791190 | None:intergenic | 30.0% | |
| AGACAAGAAGTGAAAACTTA+AGG | + | chr7.4:4790738-4790757 | MS.gene072589:intron | 30.0% | |
| AGCAACAAATTTACTGTCAA+TGG | + | chr7.4:4791967-4791986 | MS.gene072589:intron | 30.0% | |
| AGCGTTAAATTGCATTTAAC+TGG | + | chr7.4:4791370-4791389 | MS.gene072589:intron | 30.0% | |
| ATCATTGTACTACTAGTAGA+TGG | - | chr7.4:4792305-4792324 | None:intergenic | 30.0% | |
| CCATCTTTGAATCAAAAGTT+GGG | + | chr7.4:4791195-4791214 | MS.gene072589:intron | 30.0% | |
| CGGTACCAAAATTAAGAAAA+AGG | - | chr7.4:4790433-4790452 | None:intergenic | 30.0% | |
| GAAATCCTCAATCAAAATAC+CGG | - | chr7.4:4791614-4791633 | None:intergenic | 30.0% | |
| GACAGAATTGAATATGAAAC+AGG | - | chr7.4:4790064-4790083 | None:intergenic | 30.0% | |
| GTCTTGCAATAACTATCATA+AGG | - | chr7.4:4790785-4790804 | None:intergenic | 30.0% | |
| TAAAAATACTCCATAAGGAC+AGG | - | chr7.4:4789710-4789729 | None:intergenic | 30.0% | |
| TAAATCAACAACTATGGTGT+TGG | - | chr7.4:4792216-4792235 | None:intergenic | 30.0% | |
| TAGAACAGAGAAAATGATGT+AGG | - | chr7.4:4791871-4791890 | None:intergenic | 30.0% | |
| TCACAACTGAAGAGAATATT+CGG | - | chr7.4:4790041-4790060 | None:intergenic | 30.0% | |
| TCCATCTTTGAATCAAAAGT+TGG | + | chr7.4:4791194-4791213 | MS.gene072589:intron | 30.0% | |
| TCGTATGATCTGGAAAATTA+CGG | - | chr7.4:4791268-4791287 | None:intergenic | 30.0% | |
| TCTGAATTTGCGAAAATGAA+AGG | + | chr7.4:4792093-4792112 | MS.gene072589:intron | 30.0% | |
| TCTGATTATATGGTGTTTGT+AGG | + | chr7.4:4791730-4791749 | MS.gene072589:intron | 30.0% | |
| TGCAGACAAAATTCTTTGAA+GGG | + | chr7.4:4790967-4790986 | MS.gene072589:intron | 30.0% | |
| TGTTATACAATTCTACAAGC+AGG | - | chr7.4:4792587-4792606 | None:intergenic | 30.0% | |
| TGTTGTTCTCAATTGTTTAC+CGG | + | chr7.4:4791592-4791611 | MS.gene072589:intron | 30.0% | |
| TTACTGTTGTGAAATTGCAT+TGG | + | chr7.4:4791227-4791246 | MS.gene072589:intron | 30.0% | |
| TTCATACTTACCAATTGTGA+GGG | + | chr7.4:4790579-4790598 | MS.gene072589:CDS | 30.0% | |
| ! | AAATTGCTTAGTTTGAGACA+TGG | + | chr7.4:4790834-4790853 | MS.gene072589:intron | 30.0% |
| ! | AATCTGAAGTCAAGTTTCTT+AGG | + | chr7.4:4791074-4791093 | MS.gene072589:intron | 30.0% |
| ! | CGATTTCATTAGAGAAGTTT+TGG | + | chr7.4:4791762-4791781 | MS.gene072589:intron | 30.0% |
| ! | CTTTGATTTACTTGACTTGA+TGG | + | chr7.4:4789051-4789070 | MS.gene072589:intron | 30.0% |
| ! | GGTATTTTACCTTGTTCATT+AGG | - | chr7.4:4791840-4791859 | None:intergenic | 30.0% |
| ! | TATTTTATAATGTAGGCTGC+TGG | + | chr7.4:4790220-4790239 | MS.gene072589:intron | 30.0% |
| ! | TCCATGTTTATTGTTTCTCA+TGG | + | chr7.4:4791167-4791186 | MS.gene072589:intron | 30.0% |
| !! | AAAATGATGTAGGTTCTGAA+AGG | - | chr7.4:4791861-4791880 | None:intergenic | 30.0% |
| !! | TCTGTTCTATCACTTTGTTT+TGG | + | chr7.4:4791882-4791901 | MS.gene072589:intron | 30.0% |
| !!! | AGTTTGTTTTTTAAGGCCTA+TGG | + | chr7.4:4789759-4789778 | MS.gene072589:intron | 30.0% |
| !!! | GTATTTTGATTGAGGATTTC+TGG | + | chr7.4:4791614-4791633 | MS.gene072589:intron | 30.0% |
| !!! | TGCTGTTATTTTGTGAAGTA+TGG | + | chr7.4:4790865-4790884 | MS.gene072589:intron | 30.0% |
| AAAATAAGTCATGTGGGTAC+TGG | - | chr7.4:4792338-4792357 | None:intergenic | 35.0% | |
| AACCCTGACAATCAAGTTAT+AGG | + | chr7.4:4789809-4789828 | MS.gene072589:intron | 35.0% | |
| AAGCTTGAGTAAACAGATCA+AGG | + | chr7.4:4792504-4792523 | MS.gene072589:intron | 35.0% | |
| AGAAAGACAGTAGAGTAGTA+GGG | - | chr7.4:4792561-4792580 | None:intergenic | 35.0% | |
| AGACCTATAACTTGATTGTC+AGG | - | chr7.4:4789815-4789834 | None:intergenic | 35.0% | |
| ATCTTAACAAGCTCTACAGA+TGG | - | chr7.4:4790610-4790629 | None:intergenic | 35.0% | |
| CAAGCTCTATGTGAAATTAC+AGG | + | chr7.4:4789532-4789551 | MS.gene072589:intron | 35.0% | |
| CAGCCTGGAAATAAAAAACA+GGG | - | chr7.4:4790513-4790532 | None:intergenic | 35.0% | |
| CTATAATCAGATTCAGGAAC+TGG | - | chr7.4:4792440-4792459 | None:intergenic | 35.0% | |
| CTGCAGACAAAATTCTTTGA+AGG | + | chr7.4:4790966-4790985 | MS.gene072589:intron | 35.0% | |
| GACCTATAACTTGATTGTCA+GGG | - | chr7.4:4789814-4789833 | None:intergenic | 35.0% | |
| GCTTACAAATCCAACATCTT+AGG | - | chr7.4:4792149-4792168 | None:intergenic | 35.0% | |
| GGAATCGTTCTCTGATTATA+TGG | + | chr7.4:4791720-4791739 | MS.gene072589:intron | 35.0% | |
| GTTCATACTTACCAATTGTG+AGG | + | chr7.4:4790578-4790597 | MS.gene072589:CDS | 35.0% | |
| GTTGTGAAATTGCATTGGAT+TGG | + | chr7.4:4791232-4791251 | MS.gene072589:intron | 35.0% | |
| TAAGTCATGTTCGTATGATC+TGG | - | chr7.4:4791278-4791297 | None:intergenic | 35.0% | |
| TACTAGATGCACTCAAACTA+AGG | - | chr7.4:4790122-4790141 | None:intergenic | 35.0% | |
| TAGAAAGACAGTAGAGTAGT+AGG | - | chr7.4:4792562-4792581 | None:intergenic | 35.0% | |
| TCGACAGAAATACCAATAGT+TGG | - | chr7.4:4790265-4790284 | None:intergenic | 35.0% | |
| TCTTGGCTATAATCAGATTC+AGG | - | chr7.4:4792446-4792465 | None:intergenic | 35.0% | |
| TGAATCTGATTATAGCCAAG+AGG | + | chr7.4:4792445-4792464 | MS.gene072589:intron | 35.0% | |
| TTCAACAGCAGAAATAACTG+AGG | - | chr7.4:4792472-4792491 | None:intergenic | 35.0% | |
| TTGAGAACAACACAACCATA+TGG | - | chr7.4:4791584-4791603 | None:intergenic | 35.0% | |
| TTGTATAACAAACTACAGCG+AGG | + | chr7.4:4792597-4792616 | MS.gene072589:intron | 35.0% | |
| ! | AAAAAGCTTGCTCCAACTAT+TGG | + | chr7.4:4790250-4790269 | MS.gene072589:CDS | 35.0% |
| ! | AATAGTTGGAGCAAGCTTTT+TGG | - | chr7.4:4790251-4790270 | None:intergenic | 35.0% |
| ! | AGTGTGTGCATTGTTTGTTT+TGG | - | chr7.4:4792392-4792411 | None:intergenic | 35.0% |
| ! | ATAGTTGGAGCAAGCTTTTT+GGG | - | chr7.4:4790250-4790269 | None:intergenic | 35.0% |
| ! | GACAAAATTCTTTGAAGGGT+TGG | + | chr7.4:4790971-4790990 | MS.gene072589:intron | 35.0% |
| ! | GTATGGCTATTCAAGTTTGT+TGG | + | chr7.4:4790882-4790901 | MS.gene072589:intron | 35.0% |
| !! | ACTATGGTGTTGGTAAAACT+TGG | - | chr7.4:4792206-4792225 | None:intergenic | 35.0% |
| !! | CCCAACTTTTGATTCAAAGA+TGG | - | chr7.4:4791198-4791217 | None:intergenic | 35.0% |
| !! | GTTTGTTGGTTTAACTAGTC+TGG | + | chr7.4:4790896-4790915 | MS.gene072589:intron | 35.0% |
| !!! | GTTTACCGGTATTTTGATTG+AGG | + | chr7.4:4791606-4791625 | MS.gene072589:intron | 35.0% |
| AAAAACTCTTAAAACCGGGC+AGG | - | chr7.4:4789842-4789861 | None:intergenic | 40.0% | |
| AAAACTCTTAAAACCGGGCA+GGG | - | chr7.4:4789841-4789860 | None:intergenic | 40.0% | |
| AATACTCCATAAGGACAGGT+TGG | - | chr7.4:4789706-4789725 | None:intergenic | 40.0% | |
| ACCATAAGGCGAAACAATTC+CGG | - | chr7.4:4791662-4791681 | None:intergenic | 40.0% | |
| ACTTGACAACAGGTTTGTAC+TGG | - | chr7.4:4789680-4789699 | None:intergenic | 40.0% | |
| AGAAATAACTGAGGACCTCT+TGG | - | chr7.4:4792463-4792482 | None:intergenic | 40.0% | |
| AGAGCATGGAAGCTAACTAT+GGG | + | chr7.4:4792624-4792643 | MS.gene072589:CDS | 40.0% | |
| AGTACAAACCTGTTGTCAAG+TGG | + | chr7.4:4789679-4789698 | MS.gene072589:intron | 40.0% | |
| ATAGTGGTCACCTAAGATGT+TGG | + | chr7.4:4792136-4792155 | MS.gene072589:intron | 40.0% | |
| CCAGCCTGGAAATAAAAAAC+AGG | - | chr7.4:4790514-4790533 | None:intergenic | 40.0% | |
| CGAACAAACAAACGCCATTT+GGG | + | chr7.4:4790679-4790698 | MS.gene072589:CDS | 40.0% | |
| GAGAGAGAACCTAATGAACA+AGG | + | chr7.4:4791828-4791847 | MS.gene072589:CDS | 40.0% | |
| GCAAACGCAATTCCATGTAT+TGG | - | chr7.4:4789640-4789659 | None:intergenic | 40.0% | |
| GCAAATCCAACACAACCATA+AGG | - | chr7.4:4791676-4791695 | None:intergenic | 40.0% | |
| GGCAAAACTATGTCAAGACA+TGG | + | chr7.4:4788917-4788936 | MS.gene072589:CDS | 40.0% | |
| GGTCAAGGTAATGCAAATTG+CGG | + | chr7.4:4790387-4790406 | MS.gene072589:intron | 40.0% | |
| GTCTGCAGAAAAAGACTTGA+TGG | - | chr7.4:4790954-4790973 | None:intergenic | 40.0% | |
| GTTTACCTTCAACTCCTCAA+GGG | - | chr7.4:4789210-4789229 | None:intergenic | 40.0% | |
| TACAACATGAAACTAAGGGC+TGG | + | chr7.4:4789173-4789192 | MS.gene072589:CDS | 40.0% | |
| TAGAGCATGGAAGCTAACTA+TGG | + | chr7.4:4792623-4792642 | MS.gene072589:CDS | 40.0% | |
| TGAGTCTGTCCATGAACAAT+AGG | - | chr7.4:4789149-4789168 | None:intergenic | 40.0% | |
| TGATTGTCAGGGTTCCTAAA+CGG | - | chr7.4:4789803-4789822 | None:intergenic | 40.0% | |
| TGTTTACCTTCAACTCCTCA+AGG | - | chr7.4:4789211-4789230 | None:intergenic | 40.0% | |
| TTCAGGAACTGGAGTAGTTT+AGG | - | chr7.4:4792429-4792448 | None:intergenic | 40.0% | |
| TTGCAATCCACACCAATACA+TGG | + | chr7.4:4789625-4789644 | MS.gene072589:intron | 40.0% | |
| ! | AATTGGCTAGCCAATCCTAT+AGG | - | chr7.4:4789733-4789752 | None:intergenic | 40.0% |
| ! | ATGAAACTAAGGGCTGGTAA+AGG | + | chr7.4:4789179-4789198 | MS.gene072589:CDS | 40.0% |
| ! | ATTTTCAGCTCGTCAGAAGA+AGG | + | chr7.4:4789082-4789101 | MS.gene072589:intron | 40.0% |
| ! | TGTATTGGTGTGGATTGCAA+AGG | - | chr7.4:4789625-4789644 | None:intergenic | 40.0% |
| ! | TTGGATTTGCGTCCTGTTTT+GGG | + | chr7.4:4791686-4791705 | MS.gene072589:intron | 40.0% |
| !! | CATAGTTTTGCCAATGCTTG+CGG | - | chr7.4:4788909-4788928 | None:intergenic | 40.0% |
| !! | GTAGATTTTGATGGTCATGC+TGG | - | chr7.4:4789874-4789893 | None:intergenic | 40.0% |
| !! | TGAGGATTTCTGGTATTCCA+AGG | + | chr7.4:4791624-4791643 | MS.gene072589:intron | 40.0% |
| !!! | CCTGTTTTTTATTTCCAGGC+TGG | + | chr7.4:4790511-4790530 | MS.gene072589:intron | 40.0% |
| !!! | TCCAAGGTTTTTTGCGTTAC+CGG | + | chr7.4:4791640-4791659 | MS.gene072589:intron | 40.0% |
| !!! | TGGCCCTGTTTTTTATTTCC+AGG | + | chr7.4:4790507-4790526 | MS.gene072589:intron | 40.0% |
| !!! | TGTTTTTTAAGGCCTATGGC+TGG | + | chr7.4:4789763-4789782 | MS.gene072589:intron | 40.0% |
| ACCGGAATTGTTTCGCCTTA+TGG | + | chr7.4:4791658-4791677 | MS.gene072589:intron | 45.0% | |
| AGAGTAGTAGGGAGAGTTTG+TGG | - | chr7.4:4792550-4792569 | None:intergenic | 45.0% | |
| AGGCCTTGGGAAAATCTTCA+CGG | - | chr7.4:4789108-4789127 | None:intergenic | 45.0% | |
| ATGAACACTTCCGCAAGCAT+TGG | + | chr7.4:4788896-4788915 | MS.gene072589:CDS | 45.0% | |
| CACCAATCTCCAATGTACGT+AGG | + | chr7.4:4789930-4789949 | MS.gene072589:intron | 45.0% | |
| CACCTACGTACATTGGAGAT+TGG | - | chr7.4:4789935-4789954 | None:intergenic | 45.0% | |
| CATGGTTTAACCAACCTGCA+AGG | + | chr7.4:4788935-4788954 | MS.gene072589:CDS | 45.0% | |
| CCTAAACGGCATACGAGTTA+AGG | - | chr7.4:4789789-4789808 | None:intergenic | 45.0% | |
| GAAGACATACAAGGCCAAGT+TGG | + | chr7.4:4790339-4790358 | MS.gene072589:CDS | 45.0% | |
| GCAAATGCTACACAGGTTCA+AGG | + | chr7.4:4790556-4790575 | MS.gene072589:CDS | 45.0% | |
| GCGAACAAACAAACGCCATT+TGG | + | chr7.4:4790678-4790697 | MS.gene072589:CDS | 45.0% | |
| GGAACTAGCAAATGCTACAC+AGG | + | chr7.4:4790549-4790568 | MS.gene072589:CDS | 45.0% | |
| GTTTCGCCTTATGGTTGTGT+TGG | + | chr7.4:4791667-4791686 | MS.gene072589:intron | 45.0% | |
| TCAGAGAACGATTCCGATTC+CGG | - | chr7.4:4791715-4791734 | None:intergenic | 45.0% | |
| TCCGGTAACGCAAAAAACCT+TGG | - | chr7.4:4791644-4791663 | None:intergenic | 45.0% | |
| ! | ATTTGCTAGTTCCTCAGGAG+TGG | - | chr7.4:4790542-4790561 | None:intergenic | 45.0% |
| ! | CCTTAACTCGTATGCCGTTT+AGG | + | chr7.4:4789786-4789805 | MS.gene072589:intron | 45.0% |
| ! | CGCAATTCCATGTATTGGTG+TGG | - | chr7.4:4789635-4789654 | None:intergenic | 45.0% |
| ! | GTAGCATTTGCTAGTTCCTC+AGG | - | chr7.4:4790547-4790566 | None:intergenic | 45.0% |
| ! | GTTGGATTTGCGTCCTGTTT+TGG | + | chr7.4:4791685-4791704 | MS.gene072589:intron | 45.0% |
| ! | TGACAGTGACAGCGTTGAAA+TGG | + | chr7.4:4792042-4792061 | MS.gene072589:intron | 45.0% |
| !! | GCTTGCGGAAGTGTTCATTA+GGG | - | chr7.4:4788894-4788913 | None:intergenic | 45.0% |
| !! | TGCTTGCGGAAGTGTTCATT+AGG | - | chr7.4:4788895-4788914 | None:intergenic | 45.0% |
| !! | AAAAATTTGTATTAAAAAAA+AGG | - | chr7.4:4791497-4791516 | None:intergenic | 5.0% |
| AGGAAGACGAGAAGACGCTT+AGG | + | chr7.4:4788955-4788974 | MS.gene072589:CDS | 50.0% | |
| AGTGGACCAACCTGTCCTTA+TGG | + | chr7.4:4789697-4789716 | MS.gene072589:intron | 50.0% | |
| ATTTGGGTGCCAGACTGAAG+AGG | + | chr7.4:4790695-4790714 | MS.gene072589:CDS | 50.0% | |
| CAGAGAACGATTCCGATTCC+GGG | - | chr7.4:4791714-4791733 | None:intergenic | 50.0% | |
| CCACTCAGGCCTATTGTTCA+TGG | + | chr7.4:4789137-4789156 | MS.gene072589:CDS | 50.0% | |
| CCATGAACAATAGGCCTGAG+TGG | - | chr7.4:4789140-4789159 | None:intergenic | 50.0% | |
| CTTCTCCCTTGAGGAGTTGA+AGG | + | chr7.4:4789202-4789221 | MS.gene072589:CDS | 50.0% | |
| CTTGCAGACCTTCCAAGGAT+CGG | - | chr7.4:4790303-4790322 | None:intergenic | 50.0% | |
| CTTGTCTTCCTTCTCTGCCT+CGG | - | chr7.4:4790725-4790744 | None:intergenic | 50.0% | |
| GATGGCTTCTCCCTCACAAT+TGG | - | chr7.4:4790592-4790611 | None:intergenic | 50.0% | |
| GCAGAGGCTGAAGACATACA+AGG | + | chr7.4:4790330-4790349 | MS.gene072589:CDS | 50.0% | |
| GGAGGTTCACCTACGTACAT+TGG | - | chr7.4:4789942-4789961 | None:intergenic | 50.0% | |
| TACAGCGAGGAGATAGAGCA+TGG | + | chr7.4:4792610-4792629 | MS.gene072589:intron | 50.0% | |
| TACGAGTTAAGGCCAGCCAT+AGG | - | chr7.4:4789778-4789797 | None:intergenic | 50.0% | |
| TCTTCAGTCTGGCACCCAAA+TGG | - | chr7.4:4790696-4790715 | None:intergenic | 50.0% | |
| TCTTGGGAAGACGACCAACT+TGG | - | chr7.4:4790356-4790375 | None:intergenic | 50.0% | |
| TGGTAAAGGCTTCTCCCTTG+AGG | + | chr7.4:4789193-4789212 | MS.gene072589:CDS | 50.0% | |
| TTATAGGTCTATGCCCTGCC+CGG | + | chr7.4:4789825-4789844 | MS.gene072589:intron | 50.0% | |
| TTCTCGTCTTCCTTGCAGGT+TGG | - | chr7.4:4788948-4788967 | None:intergenic | 50.0% | |
| TTTGGGTGCCAGACTGAAGA+GGG | + | chr7.4:4790696-4790715 | MS.gene072589:CDS | 50.0% | |
| ! | AGGCCGTGAAGATTTTCCCA+AGG | + | chr7.4:4789102-4789121 | MS.gene072589:CDS | 50.0% |
| ! | AGGTTGGTCCACTTGACAAC+AGG | - | chr7.4:4789690-4789709 | None:intergenic | 50.0% |
| ! | ATTTTCCCAAGGCCTACAGC+TGG | + | chr7.4:4789113-4789132 | MS.gene072589:CDS | 50.0% |
| ! | CTTCCAAGGATCGGTTCTTG+CGG | - | chr7.4:4790294-4790313 | None:intergenic | 50.0% |
| !!! | CTGTTTTGGGTTCCCGGAAT+CGG | + | chr7.4:4791699-4791718 | MS.gene072589:intron | 50.0% |
| AAGACGTGCACGCAAGGTCA+AGG | + | chr7.4:4790372-4790391 | MS.gene072589:CDS | 55.0% | |
| CGATTCCGGGAACCCAAAAC+AGG | - | chr7.4:4791701-4791720 | None:intergenic | 55.0% | |
| CGCAAGAACCGATCCTTGGA+AGG | + | chr7.4:4790292-4790311 | MS.gene072589:CDS | 55.0% | |
| CGTCTTCTCGTCTTCCTTGC+AGG | - | chr7.4:4788952-4788971 | None:intergenic | 55.0% | |
| GGTTCTCTCTCTTCTCCCAC+AGG | - | chr7.4:4791819-4791838 | None:intergenic | 55.0% | |
| TAGTCGACGTGTGTGCCTGT+GGG | + | chr7.4:4791801-4791820 | MS.gene072589:intron | 55.0% | |
| TGACCTTGCGTGCACGTCTT+GGG | - | chr7.4:4790372-4790391 | None:intergenic | 55.0% | |
| TGTCTTCAGCCTCTGCACGT+TGG | - | chr7.4:4790326-4790345 | None:intergenic | 55.0% | |
| TTGACCTTGCGTGCACGTCT+TGG | - | chr7.4:4790373-4790392 | None:intergenic | 55.0% | |
| !! | GTTGGCTTGCAGACCTTCCA+AGG | - | chr7.4:4790308-4790327 | None:intergenic | 55.0% |
| !!! | TGCGTCCTGTTTTGGGTTCC+CGG | + | chr7.4:4791693-4791712 | MS.gene072589:intron | 55.0% |
| AGTGGTCCAGCTGTAGGCCT+TGG | - | chr7.4:4789122-4789141 | None:intergenic | 60.0% | |
| CAGGAGTGGAATCACCAGCC+TGG | - | chr7.4:4790528-4790547 | None:intergenic | 60.0% | |
| CTTCCCAAGACGTGCACGCA+AGG | + | chr7.4:4790366-4790385 | MS.gene072589:CDS | 60.0% | |
| GGCTGGTGATTCCACTCCTG+AGG | + | chr7.4:4790528-4790547 | MS.gene072589:intron | 60.0% | |
| GTAGTCGACGTGTGTGCCTG+TGG | + | chr7.4:4791800-4791819 | MS.gene072589:intron | 60.0% | |
| GTCTGCAAGCCAACGTGCAG+AGG | + | chr7.4:4790314-4790333 | MS.gene072589:CDS | 60.0% | |
| GTGGTCCAGCTGTAGGCCTT+GGG | - | chr7.4:4789121-4789140 | None:intergenic | 60.0% | |
| TCGCCGCAAGAACCGATCCT+TGG | + | chr7.4:4790288-4790307 | MS.gene072589:CDS | 60.0% | |
| CAGACTGAAGAGGGCTGCCG+AGG | + | chr7.4:4790705-4790724 | MS.gene072589:CDS | 65.0% | |
| CTCGGCAGCCCTCTTCAGTC+TGG | - | chr7.4:4790707-4790726 | None:intergenic | 65.0% | |
| GGCCTACAGCTGGACCACTC+AGG | + | chr7.4:4789123-4789142 | MS.gene072589:CDS | 65.0% | |
| GGCCTGAGTGGTCCAGCTGT+AGG | - | chr7.4:4789128-4789147 | None:intergenic | 65.0% | |
| GAGGGCTGCCGAGGCAGAGA+AGG | + | chr7.4:4790714-4790733 | MS.gene072589:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 4788868 | 4792668 | 4788868 | ID=MS.gene072589 |
| chr7.4 | mRNA | 4788868 | 4792668 | 4788868 | ID=MS.gene072589.t1;Parent=MS.gene072589 |
| chr7.4 | exon | 4788868 | 4788976 | 4788868 | ID=MS.gene072589.t1.exon1;Parent=MS.gene072589.t1 |
| chr7.4 | CDS | 4788868 | 4788976 | 4788868 | ID=cds.MS.gene072589.t1;Parent=MS.gene072589.t1 |
| chr7.4 | exon | 4789090 | 4789223 | 4789090 | ID=MS.gene072589.t1.exon2;Parent=MS.gene072589.t1 |
| chr7.4 | CDS | 4789090 | 4789223 | 4789090 | ID=cds.MS.gene072589.t1;Parent=MS.gene072589.t1 |
| chr7.4 | exon | 4790235 | 4790393 | 4790235 | ID=MS.gene072589.t1.exon3;Parent=MS.gene072589.t1 |
| chr7.4 | CDS | 4790235 | 4790393 | 4790235 | ID=cds.MS.gene072589.t1;Parent=MS.gene072589.t1 |
| chr7.4 | exon | 4790529 | 4790746 | 4790529 | ID=MS.gene072589.t1.exon4;Parent=MS.gene072589.t1 |
| chr7.4 | CDS | 4790529 | 4790746 | 4790529 | ID=cds.MS.gene072589.t1;Parent=MS.gene072589.t1 |
| chr7.4 | exon | 4791804 | 4791849 | 4791804 | ID=MS.gene072589.t1.exon5;Parent=MS.gene072589.t1 |
| chr7.4 | CDS | 4791804 | 4791849 | 4791804 | ID=cds.MS.gene072589.t1;Parent=MS.gene072589.t1 |
| chr7.4 | exon | 4792615 | 4792668 | 4792615 | ID=MS.gene072589.t1.exon6;Parent=MS.gene072589.t1 |
| chr7.4 | CDS | 4792615 | 4792668 | 4792615 | ID=cds.MS.gene072589.t1;Parent=MS.gene072589.t1 |
| Gene Sequence |
| Protein sequence |
