AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44018

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44018.t1 MTR_1g022165 99.517 207 1 0 1 207 1 207 1.30e-151 419
MS.gene44018.t1 MTR_7g111590 97.585 207 5 0 1 207 1 207 6.81e-150 414
MS.gene44018.t1 MTR_5g026750 96.618 207 7 0 1 207 1 207 1.38e-148 411
MS.gene44018.t1 MTR_7g111590 97.101 207 4 1 1 207 1 205 2.99e-147 407
MS.gene44018.t1 MTR_8g071810 65.432 81 28 0 104 184 67 147 9.36e-28 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44018.t1 AT3G49010 86.911 191 25 0 2 192 1 191 3.06e-125 352
MS.gene44018.t1 AT3G49010 86.911 191 25 0 2 192 1 191 3.06e-125 352
MS.gene44018.t1 AT3G49010 86.911 191 25 0 2 192 1 191 3.06e-125 352
MS.gene44018.t1 AT3G49010 86.911 191 25 0 2 192 1 191 3.06e-125 352
MS.gene44018.t1 AT3G49010 86.911 191 25 0 2 192 1 191 3.06e-125 352
MS.gene44018.t1 AT3G49010 86.387 191 24 1 2 192 1 189 8.35e-123 346
MS.gene44018.t1 AT5G23900 84.946 186 28 0 2 187 1 186 1.11e-118 335
MS.gene44018.t1 AT3G48960 76.562 192 45 0 2 193 1 192 4.34e-108 309
MS.gene44018.t1 AT3G49010 62.304 191 19 1 2 192 1 138 4.03e-79 233

Find 66 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCTTCACTGCCTTCTTT+TGG 0.308723 1.3:-57482075 None:intergenic
TTGGTCTTGCGTGCGCGCCT+TGG 0.314350 1.3:-57483221 None:intergenic
TCGCCGCAAGAACCGTTCTT+TGG 0.319042 1.3:+57483139 MS.gene44018:CDS
TGCTTACGGAAGTGTTCATT+TGG 0.319315 1.3:-57481681 None:intergenic
ATGGTTGGAGCAAGCTTCTT+GGG 0.323930 1.3:-57483098 None:intergenic
GCGCACCAACAAGCGTCATT+TGG 0.336081 1.3:+57483526 MS.gene44018:CDS
GCCAACTGTTGAACTTGTTA+AGG 0.359245 1.3:+57483454 MS.gene44018:CDS
TGGTCTTGCGTGCGCGCCTT+GGG 0.368380 1.3:-57483220 None:intergenic
AATGGTTGGAGCAAGCTTCT+TGG 0.375579 1.3:-57483099 None:intergenic
CAAAGGTCCAGCGGTTGGCC+GGG 0.376507 1.3:-57482101 None:intergenic
CGCACCAACAAGCGTCATTT+GGG 0.378501 1.3:+57483527 MS.gene44018:CDS
TTCAAGAGAAAATCCTTTCC+CGG 0.387347 1.3:-57482173 None:intergenic
GCAGTTTGACCGTGAACAAT+TGG 0.409288 1.3:-57482127 None:intergenic
TCAAAGGTCCAGCGGTTGGC+CGG 0.411486 1.3:-57482102 None:intergenic
AAAGGTCCAGCGGTTGGCCG+GGG 0.418246 1.3:-57482100 None:intergenic
CATAGTTCTGCCAATGCTTA+CGG 0.420637 1.3:-57481695 None:intergenic
AGCAAGCTTCTTGGGGATAC+CGG 0.426394 1.3:-57483090 None:intergenic
GAGGGCTGCTGAGGCAGAAA+AGG 0.445694 1.3:+57483562 MS.gene44018:CDS
GCTTACGGAAGTGTTCATTT+GGG 0.453054 1.3:-57481680 None:intergenic
GGCCAACCGCTGGACCTTTG+AGG 0.459880 1.3:+57482104 MS.gene44018:CDS
CGCAAGAACCGTTCTTTGGA+GGG 0.473099 1.3:+57483143 MS.gene44018:CDS
AGCACCCAAATGACGCTTGT+TGG 0.478609 1.3:-57483531 None:intergenic
CCTTGGGAAAACAACCAACT+TGG 0.479943 1.3:-57483204 None:intergenic
TAGGAAAACCAGGAGACGCT+TGG 0.484150 1.3:+57481743 MS.gene44018:CDS
CCTTTGAGGCCAATTGTTCA+CGG 0.485229 1.3:+57482118 MS.gene44018:CDS
ACAAGCGTCATTTGGGTGCT+AGG 0.489744 1.3:+57483534 MS.gene44018:CDS
CCGCAAGAACCGTTCTTTGG+AGG 0.494965 1.3:+57483142 MS.gene44018:CDS
AGGAAAACCAGGAGACGCTT+GGG 0.497890 1.3:+57481744 MS.gene44018:CDS
GACGCTTGTTGGTGCGCTCA+AGG 0.500487 1.3:-57483520 None:intergenic
TAAGGTTACAGATGAAATGA+AGG 0.502882 1.3:+57483472 MS.gene44018:CDS
GTAATTACCCAAGCGTCTCC+TGG 0.506062 1.3:-57481751 None:intergenic
AAGAAGCTTGCTCCAACCAT+TGG 0.507390 1.3:+57483101 MS.gene44018:CDS
CAATCGGCAAGTATGATCCT+TGG 0.510540 1.3:-57483421 None:intergenic
GTTGGCTTCTCCCTCACAAT+CGG 0.511949 1.3:-57483437 None:intergenic
GTGGCATTAGCAAGTTCCTC+AGG 0.518954 1.3:-57483392 None:intergenic
AAGAACGGTTCTTGCGGCGA+TGG 0.520566 1.3:-57483136 None:intergenic
ATGAAACTTCGTGCCGGGAA+AGG 0.523982 1.3:+57482160 MS.gene44018:CDS
ACCTTAACAAGTTCAACAGT+TGG 0.524264 1.3:-57483455 None:intergenic
CCGTGAACAATTGGCCTCAA+AGG 0.527396 1.3:-57482118 None:intergenic
ATTTGGGTGCTAGGCTCAAG+AGG 0.544127 1.3:+57483543 MS.gene44018:CDS
GGCCTCAAAGGTCCAGCGGT+TGG 0.553506 1.3:-57482106 None:intergenic
GATCATACTTGCCGATTGTG+AGG 0.555446 1.3:+57483426 MS.gene44018:CDS
ACAACATGAAACTTCGTGCC+GGG 0.563845 1.3:+57482155 MS.gene44018:CDS
ATCAACCAGCTAGGAAAACC+AGG 0.567237 1.3:+57481733 MS.gene44018:CDS
TAGGCTCAAGAGGGCTGCTG+AGG 0.568695 1.3:+57483553 MS.gene44018:CDS
AAGGTCCAGCGGTTGGCCGG+GGG 0.569118 1.3:-57482099 None:intergenic
TACAACATGAAACTTCGTGC+CGG 0.570733 1.3:+57482154 MS.gene44018:CDS
GAAAACATACAAGGCCAAGT+TGG 0.571763 1.3:+57483190 MS.gene44018:CDS
ATGAACACTTCCGTAAGCAT+TGG 0.574424 1.3:+57481685 MS.gene44018:CDS
TCAACAGAAATGCCAATGGT+TGG 0.577031 1.3:-57483113 None:intergenic
CCTCCAAAGAACGGTTCTTG+CGG 0.586577 1.3:-57483142 None:intergenic
CATGGTTCAATCAACCAGCT+AGG 0.591929 1.3:+57481724 MS.gene44018:CDS
CTTGCAGACCCTCCAAAGAA+CGG 0.595271 1.3:-57483151 None:intergenic
AACATTGTTGTGCTTCACCA+TGG 0.595442 1.3:-57481655 None:intergenic
ATCATACTTGCCGATTGTGA+GGG 0.601270 1.3:+57483427 MS.gene44018:CDS
TGGTTGGAGCAAGCTTCTTG+GGG 0.611973 1.3:-57483097 None:intergenic
GCTAATGCCACACAAGTCCA+AGG 0.623000 1.3:+57483404 MS.gene44018:CDS
AAGGCGCGCACGCAAGACCA+AGG 0.626116 1.3:+57483223 MS.gene44018:CDS
GTCTGCAAGCTAATGTGCAG+AGG 0.628654 1.3:+57483165 MS.gene44018:CDS
TTTGGGTGCTAGGCTCAAGA+GGG 0.631845 1.3:+57483544 MS.gene44018:CDS
GGCAGAACTATGTCAAAACA+TGG 0.632555 1.3:+57481706 MS.gene44018:CDS
GGCTGGGGACTCTACACCTG+AGG 0.639995 1.3:+57483376 MS.gene44018:intron
GCAGAGGCTGAAAACATACA+AGG 0.656774 1.3:+57483181 MS.gene44018:CDS
ATGGTCAACAGAAATGCCAA+TGG 0.663073 1.3:-57483117 None:intergenic
AATTGGCCTCAAAGGTCCAG+CGG 0.684475 1.3:-57482110 None:intergenic
GTATGATCCTTGGACTTGTG+TGG 0.704331 1.3:-57483411 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTAAGTTGTAAAAATAT+AGG - chr1.3:57481776-57481795 None:intergenic 10.0%
!! AAGTTATAATATGTAGTTTA+TGG - chr1.3:57483043-57483062 None:intergenic 15.0%
!! ATAAACTAAAATCATCATTG+AGG - chr1.3:57483260-57483279 None:intergenic 20.0%
!! CATATGACTAATTAATTTCT+GGG + chr1.3:57482449-57482468 MS.gene44018:intron 20.0%
!! TAACATATAGTTCTTGTAAT+GGG + chr1.3:57482615-57482634 MS.gene44018:intron 20.0%
!! TCATATGACTAATTAATTTC+TGG + chr1.3:57482448-57482467 MS.gene44018:intron 20.0%
!!! AATTATTTTTATTTGTCTGC+AGG + chr1.3:57483355-57483374 MS.gene44018:intron 20.0%
!!! CTTGATTACTTTTGTTTTTA+TGG + chr1.3:57483060-57483079 MS.gene44018:intron 20.0%
!!! TAATAATGGGTTTATACATA+TGG + chr1.3:57482880-57482899 MS.gene44018:intron 20.0%
!!! TTGAAATAGGAAGTATTAAT+CGG + chr1.3:57483321-57483340 MS.gene44018:intron 20.0%
! AATAGCCATATGTAAAAACT+TGG - chr1.3:57482913-57482932 None:intergenic 25.0%
! ATATTAGATAGAACTAATGC+AGG - chr1.3:57482349-57482368 None:intergenic 25.0%
! ATCTAATATAATCATTGTCG+TGG + chr1.3:57482360-57482379 MS.gene44018:intron 25.0%
! GTAACATATAGTTCTTGTAA+TGG + chr1.3:57482614-57482633 MS.gene44018:intron 25.0%
! TACTCTCAAGTTATTAAACA+TGG - chr1.3:57482579-57482598 None:intergenic 25.0%
! TATTAGATAGAACTAATGCA+GGG - chr1.3:57482348-57482367 None:intergenic 25.0%
!! CCTACAGTTTAATCTATTTT+CGG - chr1.3:57482514-57482533 None:intergenic 25.0%
!! CTACAGTTTAATCTATTTTC+GGG - chr1.3:57482513-57482532 None:intergenic 25.0%
!! TAATGATCGGTTTATACATA+TGG + chr1.3:57482827-57482846 MS.gene44018:intron 25.0%
AGATTAAACTGTAGGAAAGA+TGG + chr1.3:57482519-57482538 MS.gene44018:intron 30.0%
AGTTGAAGACTATAAAAGTC+TGG - chr1.3:57483014-57483033 None:intergenic 30.0%
CAAACAAACAATTTAAGCCA+CGG - chr1.3:57481873-57481892 None:intergenic 30.0%
CAAACATGTCAAAAAACATG+AGG - chr1.3:57481849-57481868 None:intergenic 30.0%
CCGAAAATAGATTAAACTGT+AGG + chr1.3:57482511-57482530 MS.gene44018:intron 30.0%
GCATATGACACTTAAATGAT+GGG + chr1.3:57482694-57482713 MS.gene44018:intron 30.0%
TAAGGTTACAGATGAAATGA+AGG + chr1.3:57483472-57483491 MS.gene44018:CDS 30.0%
TGCATATGACACTTAAATGA+TGG + chr1.3:57482693-57482712 MS.gene44018:intron 30.0%
TTGAGGTTCTTATATTACCT+TGG - chr1.3:57483243-57483262 None:intergenic 30.0%
TTTAGCGTAAAAACTATAGC+AGG - chr1.3:57482292-57482311 None:intergenic 30.0%
! ATGGCTCTACACTTTAATAA+TGG + chr1.3:57482866-57482885 MS.gene44018:intron 30.0%
! ATTTTCTCTTGAAGAGTTGA+AGG + chr1.3:57482183-57482202 MS.gene44018:CDS 30.0%
! TGACACCAAGTTTTTACATA+TGG + chr1.3:57482905-57482924 MS.gene44018:intron 30.0%
! TGGCTCTACACTTTAATAAT+GGG + chr1.3:57482867-57482886 MS.gene44018:intron 30.0%
! TTTTACGCTAAAGACTACAT+TGG + chr1.3:57482300-57482319 MS.gene44018:intron 30.0%
!! AAACGATGGGTTTTTACATA+TGG + chr1.3:57482794-57482813 MS.gene44018:intron 30.0%
!! AAATGATGGGTTTATACACA+TGG + chr1.3:57482707-57482726 MS.gene44018:intron 30.0%
!! TGGATGATGGTTTTTACATA+TGG + chr1.3:57482847-57482866 MS.gene44018:intron 30.0%
!!! CTAGAGTTCAAGTTTTATTC+AGG - chr1.3:57482984-57483003 None:intergenic 30.0%
AAAACCCATCGTTTAAGTGT+CGG - chr1.3:57482755-57482774 None:intergenic 35.0%
AAACTGTAGGAAAGATGGTA+CGG + chr1.3:57482524-57482543 MS.gene44018:intron 35.0%
ACCTTAACAAGTTCAACAGT+TGG - chr1.3:57483458-57483477 None:intergenic 35.0%
CGGTTTATACATATGGATGA+TGG + chr1.3:57482834-57482853 MS.gene44018:intron 35.0%
GGTTTATACACATGGATGAT+GGG + chr1.3:57482715-57482734 MS.gene44018:intron 35.0%
TCTGCAGTGTCTTGAATTAT+AGG + chr1.3:57481933-57481952 MS.gene44018:intron 35.0%
TGAAGACTATAAAAGTCTGG+AGG - chr1.3:57483011-57483030 None:intergenic 35.0%
TGGCTAGACACTTTAATGAT+CGG + chr1.3:57482814-57482833 MS.gene44018:intron 35.0%
TTCAAGAGAAAATCCTTTCC+CGG - chr1.3:57482176-57482195 None:intergenic 35.0%
! AAATCTTCACTGCCTTCTTT+TGG - chr1.3:57482078-57482097 None:intergenic 35.0%
! CTGTGTAGATGTTACTTCAT+GGG + chr1.3:57482244-57482263 MS.gene44018:intron 35.0%
! TCTGTGTAGATGTTACTTCA+TGG + chr1.3:57482243-57482262 MS.gene44018:intron 35.0%
!! AGCTTGTTGAACTTTAACTG+TGG + chr1.3:57482212-57482231 MS.gene44018:intron 35.0%
!! ATTTTTATTTGTCTGCAGGC+TGG + chr1.3:57483359-57483378 MS.gene44018:intron 35.0%
!! TTTTTATTTGTCTGCAGGCT+GGG + chr1.3:57483360-57483379 MS.gene44018:intron 35.0%
!!! GGATGATGGGTTTTTACATA+TGG + chr1.3:57482728-57482747 MS.gene44018:intron 35.0%
!!! TTTTTTGACATGTTTGTCCG+TGG + chr1.3:57481853-57481872 MS.gene44018:intron 35.0%
AAACCCATCGTTTAAGTGTC+GGG - chr1.3:57482787-57482806 None:intergenic 40.0%
ATGAACACTTCCGTAAGCAT+TGG + chr1.3:57481685-57481704 MS.gene44018:CDS 40.0%
ATGGCTCAACACTTAAACGA+TGG + chr1.3:57482747-57482766 MS.gene44018:intron 40.0%
ATGGTCAACAGAAATGCCAA+TGG - chr1.3:57483120-57483139 None:intergenic 40.0%
CAACGATGGTATCAAAGCTA+AGG - chr1.3:57483293-57483312 None:intergenic 40.0%
GAAAACATACAAGGCCAAGT+TGG + chr1.3:57483190-57483209 MS.gene44018:CDS 40.0%
GGCACAGTTGAATATCAAAC+AGG - chr1.3:57482492-57482511 None:intergenic 40.0%
GGCAGAACTATGTCAAAACA+TGG + chr1.3:57481706-57481725 MS.gene44018:CDS 40.0%
GGGTTTATACACATGGATGA+TGG + chr1.3:57482714-57482733 MS.gene44018:intron 40.0%
TACAACATGAAACTTCGTGC+CGG + chr1.3:57482154-57482173 MS.gene44018:CDS 40.0%
TCAACAGAAATGCCAATGGT+TGG - chr1.3:57483116-57483135 None:intergenic 40.0%
TGGCTCAACACTTAAACGAT+GGG + chr1.3:57482748-57482767 MS.gene44018:intron 40.0%
! ATCATACTTGCCGATTGTGA+GGG + chr1.3:57483427-57483446 MS.gene44018:CDS 40.0%
! CATAGTTCTGCCAATGCTTA+CGG - chr1.3:57481698-57481717 None:intergenic 40.0%
!! GCAGGGATGCTTATTTTCAT+AGG - chr1.3:57482331-57482350 None:intergenic 40.0%
!! GCCAACTGTTGAACTTGTTA+AGG + chr1.3:57483454-57483473 MS.gene44018:CDS 40.0%
!! GCTTACGGAAGTGTTCATTT+GGG - chr1.3:57481683-57481702 None:intergenic 40.0%
!! TGCTTACGGAAGTGTTCATT+TGG - chr1.3:57481684-57481703 None:intergenic 40.0%
!! TTTTATTTGTCTGCAGGCTG+GGG + chr1.3:57483361-57483380 MS.gene44018:intron 40.0%
!!! TTGTTTTTATGGCAGACTGC+CGG + chr1.3:57483071-57483090 MS.gene44018:intron 40.0%
AATGGTTGGAGCAAGCTTCT+TGG - chr1.3:57483102-57483121 None:intergenic 45.0%
ACAACATGAAACTTCGTGCC+GGG + chr1.3:57482155-57482174 MS.gene44018:CDS 45.0%
ATCAACCAGCTAGGAAAACC+AGG + chr1.3:57481733-57481752 MS.gene44018:CDS 45.0%
ATGACCCGACACTTAAACGA+TGG + chr1.3:57482780-57482799 MS.gene44018:intron 45.0%
ATGGTTGGAGCAAGCTTCTT+GGG - chr1.3:57483101-57483120 None:intergenic 45.0%
CAATCGGCAAGTATGATCCT+TGG - chr1.3:57483424-57483443 None:intergenic 45.0%
CATGGTTCAATCAACCAGCT+AGG + chr1.3:57481724-57481743 MS.gene44018:CDS 45.0%
CCTTGGGAAAACAACCAACT+TGG - chr1.3:57483207-57483226 None:intergenic 45.0%
GCAGAGGCTGAAAACATACA+AGG + chr1.3:57483181-57483200 MS.gene44018:CDS 45.0%
GCAGTTTGACCGTGAACAAT+TGG - chr1.3:57482130-57482149 None:intergenic 45.0%
GTATGATCCTTGGACTTGTG+TGG - chr1.3:57483414-57483433 None:intergenic 45.0%
TGACCCGACACTTAAACGAT+GGG + chr1.3:57482781-57482800 MS.gene44018:intron 45.0%
TTGATACCATCGTTGCTGCA+GGG + chr1.3:57483298-57483317 MS.gene44018:intron 45.0%
TTTGATACCATCGTTGCTGC+AGG + chr1.3:57483297-57483316 MS.gene44018:intron 45.0%
! AAGAAGCTTGCTCCAACCAT+TGG + chr1.3:57483101-57483120 MS.gene44018:CDS 45.0%
! GATCATACTTGCCGATTGTG+AGG + chr1.3:57483426-57483445 MS.gene44018:CDS 45.0%
! TCTTCACTGCCTTCTTTTGG+CGG - chr1.3:57482075-57482094 None:intergenic 45.0%
! TTTTGTAGCCCGCCAAAAGA+AGG + chr1.3:57482063-57482082 MS.gene44018:intron 45.0%
!! CCTTTGAGGCCAATTGTTCA+CGG + chr1.3:57482118-57482137 MS.gene44018:CDS 45.0%
!!! CCAAGTTGGTTGTTTTCCCA+AGG + chr1.3:57483204-57483223 MS.gene44018:CDS 45.0%
ACAAGCGTCATTTGGGTGCT+AGG + chr1.3:57483534-57483553 MS.gene44018:CDS 50.0%
AGCAAGCTTCTTGGGGATAC+CGG - chr1.3:57483093-57483112 None:intergenic 50.0%
AGCACCCAAATGACGCTTGT+TGG - chr1.3:57483534-57483553 None:intergenic 50.0%
AGGAAAACCAGGAGACGCTT+GGG + chr1.3:57481744-57481763 MS.gene44018:CDS 50.0%
ATGAAACTTCGTGCCGGGAA+AGG + chr1.3:57482160-57482179 MS.gene44018:CDS 50.0%
ATTTGGGTGCTAGGCTCAAG+AGG + chr1.3:57483543-57483562 MS.gene44018:CDS 50.0%
CCTCCAAAGAACGGTTCTTG+CGG - chr1.3:57483145-57483164 None:intergenic 50.0%
CGCAAGAACCGTTCTTTGGA+GGG + chr1.3:57483143-57483162 MS.gene44018:CDS 50.0%
CGCACCAACAAGCGTCATTT+GGG + chr1.3:57483527-57483546 MS.gene44018:CDS 50.0%
CGTTGCTGCAGGGTTGAAAT+AGG + chr1.3:57483308-57483327 MS.gene44018:intron 50.0%
CTTGCAGACCCTCCAAAGAA+CGG - chr1.3:57483154-57483173 None:intergenic 50.0%
GCTAATGCCACACAAGTCCA+AGG + chr1.3:57483404-57483423 MS.gene44018:CDS 50.0%
GTAATTACCCAAGCGTCTCC+TGG - chr1.3:57481754-57481773 None:intergenic 50.0%
GTCTGCAAGCTAATGTGCAG+AGG + chr1.3:57483165-57483184 MS.gene44018:CDS 50.0%
GTGGCATTAGCAAGTTCCTC+AGG - chr1.3:57483395-57483414 None:intergenic 50.0%
TAGGAAAACCAGGAGACGCT+TGG + chr1.3:57481743-57481762 MS.gene44018:CDS 50.0%
TGGTTGGAGCAAGCTTCTTG+GGG - chr1.3:57483100-57483119 None:intergenic 50.0%
TTTCAACCCTGCAGCAACGA+TGG - chr1.3:57483307-57483326 None:intergenic 50.0%
TTTGGGTGCTAGGCTCAAGA+GGG + chr1.3:57483544-57483563 MS.gene44018:CDS 50.0%
! AATTGGCCTCAAAGGTCCAG+CGG - chr1.3:57482113-57482132 None:intergenic 50.0%
! AGGCAGTGAAGATTTTCCCC+CGG + chr1.3:57482083-57482102 MS.gene44018:CDS 50.0%
! CCGTGAACAATTGGCCTCAA+AGG - chr1.3:57482121-57482140 None:intergenic 50.0%
! CTTCACTGCCTTCTTTTGGC+GGG - chr1.3:57482074-57482093 None:intergenic 50.0%
! GTTGGCTTCTCCCTCACAAT+CGG - chr1.3:57483440-57483459 None:intergenic 50.0%
AAGAACGGTTCTTGCGGCGA+TGG - chr1.3:57483139-57483158 None:intergenic 55.0%
CCGCAAGAACCGTTCTTTGG+AGG + chr1.3:57483142-57483161 MS.gene44018:CDS 55.0%
GCGCACCAACAAGCGTCATT+TGG + chr1.3:57483526-57483545 MS.gene44018:CDS 55.0%
TCGCCGCAAGAACCGTTCTT+TGG + chr1.3:57483139-57483158 MS.gene44018:CDS 55.0%
!! CGTCTCCTGGTTTTCCTAGC+TGG - chr1.3:57481741-57481760 None:intergenic 55.0%
GAGGGCTGCTGAGGCAGAAA+AGG + chr1.3:57483562-57483581 MS.gene44018:CDS 60.0%
TAGGCTCAAGAGGGCTGCTG+AGG + chr1.3:57483553-57483572 MS.gene44018:CDS 60.0%
TCAAAGGTCCAGCGGTTGGC+CGG - chr1.3:57482105-57482124 None:intergenic 60.0%
! GACGCTTGTTGGTGCGCTCA+AGG - chr1.3:57483523-57483542 None:intergenic 60.0%
AAGGCGCGCACGCAAGACCA+AGG + chr1.3:57483223-57483242 MS.gene44018:CDS 65.0%
GGCCAACCGCTGGACCTTTG+AGG + chr1.3:57482104-57482123 MS.gene44018:CDS 65.0%
GGCCTCAAAGGTCCAGCGGT+TGG - chr1.3:57482109-57482128 None:intergenic 65.0%
GGCTGGGGACTCTACACCTG+AGG + chr1.3:57483376-57483395 MS.gene44018:intron 65.0%
! AAAGGTCCAGCGGTTGGCCG+GGG - chr1.3:57482103-57482122 None:intergenic 65.0%
! ATTTTCCCCCGGCCAACCGC+TGG + chr1.3:57482094-57482113 MS.gene44018:CDS 65.0%
! CAAAGGTCCAGCGGTTGGCC+GGG - chr1.3:57482104-57482123 None:intergenic 65.0%
! TGGTCTTGCGTGCGCGCCTT+GGG - chr1.3:57483223-57483242 None:intergenic 65.0%
!! TTGGTCTTGCGTGCGCGCCT+TGG - chr1.3:57483224-57483243 None:intergenic 65.0%
! AAGGTCCAGCGGTTGGCCGG+GGG - chr1.3:57482102-57482121 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 57481657 57483598 57481657 ID=MS.gene44018
chr1.3 mRNA 57481657 57483598 57481657 ID=MS.gene44018.t1;Parent=MS.gene44018
chr1.3 exon 57481657 57481765 57481657 ID=MS.gene44018.t1.exon1;Parent=MS.gene44018.t1
chr1.3 CDS 57481657 57481765 57481657 ID=cds.MS.gene44018.t1;Parent=MS.gene44018.t1
chr1.3 exon 57482071 57482204 57482071 ID=MS.gene44018.t1.exon2;Parent=MS.gene44018.t1
chr1.3 CDS 57482071 57482204 57482071 ID=cds.MS.gene44018.t1;Parent=MS.gene44018.t1
chr1.3 exon 57483086 57483244 57483086 ID=MS.gene44018.t1.exon3;Parent=MS.gene44018.t1
chr1.3 CDS 57483086 57483244 57483086 ID=cds.MS.gene44018.t1;Parent=MS.gene44018.t1
chr1.3 exon 57483377 57483598 57483377 ID=MS.gene44018.t1.exon4;Parent=MS.gene44018.t1
chr1.3 CDS 57483377 57483598 57483377 ID=cds.MS.gene44018.t1;Parent=MS.gene44018.t1
Gene Sequence

>MS.gene44018

ATGGTGAAGCACAACAATGTTATCCCAAATGAACACTTCCGTAAGCATTGGCAGAACTATGTCAAAACATGGTTCAATCAACCAGCTAGGAAAACCAGGAGACGCTTGGGTAATTACCTATATTTTTACAACTTAATTATGCTAATTATTTTGCTTAATTTTAGTTTGAAATTTGTTCAAAAATAATTGCCTCATGTTTTTTGACATGTTTGTCCGTGGCTTAAATTGTTTGTTTGAGTTATAGTAATGCTGTTTCGTTCATTTCTTTTGATATGTTCTGCAGTGTCTTGAATTATAGGTTTTCTGTTTGATTCATTTCTTTTGATATGCTGTGTTGCGTCTTAAGTTGTTAGTTTGTATTATAGTATTATTATTTGCTTCATTTTTTGAAATGTCGTGCTGTGATTTTTGTAGCCCGCCAAAAGAAGGCAGTGAAGATTTTCCCCCGGCCAACCGCTGGACCTTTGAGGCCAATTGTTCACGGTCAAACTGCTAAGTACAACATGAAACTTCGTGCCGGGAAAGGATTTTCTCTTGAAGAGTTGAAGGTAGTATAGCTTGTTGAACTTTAACTGTGGTCTTATGTTCTGTGTAGATGTTACTTCATGGGCTTGTAGATTTGTGTTAGTTATCCTGCTATAGTTTTTACGCTAAAGACTACATTGGAATATCCTATGAAAATAAGCATCCCTGCATTAGTTCTATCTAATATAATCATTGTCGTGGAAGAACTTATAATCTTTGTTTTCTTTGCTTGTACTTTGCTACACACATGTTTTTTTTTTTCTTTTTCATATGACTAATTAATTTCTGGGAATATTTTCACTTGTAACCTGTTTGATATTCAACTGTGCCCGAAAATAGATTAAACTGTAGGAAAGATGGTACGGCTTTTATAGTCTTCAATTCTGTACTAAAACCATGTTTAATAACTTGAGAGTAACAAATCATTTAAGAGTAACATATAGTTCTTGTAATGGGTAAACTGATATTCTATGTCTTTGTTATTCTGCTCGACACTTTTATGAAAAGTCTTTGCATATGACACTTAAATGATGGGTTTATACACATGGATGATGGGTTTTTACATATGGCTCAACACTTAAACGATGGGTTTTTACAAATGACCCGACACTTAAACGATGGGTTTTTACATATGGCTAGACACTTTAATGATCGGTTTATACATATGGATGATGGTTTTTACATATGGCTCTACACTTTAATAATGGGTTTATACATATGGCTTGACACCAAGTTTTTACATATGGCTATTTGATTTCTTAGAATATTTTCATAAGTAATTAGTAACAATTCAATTGTGCCTGAATAAAACTTGAACTCTAGAAAACCTCCAGACTTTTATAGTCTTCAACTATATATCCATAAACTACATATTATAACTTGATTACTTTTGTTTTTATGGCAGACTGCCGGTATCCCCAAGAAGCTTGCTCCAACCATTGGCATTTCTGTTGACCATCGCCGCAAGAACCGTTCTTTGGAGGGTCTGCAAGCTAATGTGCAGAGGCTGAAAACATACAAGGCCAAGTTGGTTGTTTTCCCAAGGCGCGCACGCAAGACCAAGGTAATATAAGAACCTCAATGATGATTTTAGTTTATGTATGCTTTTCCTTAGCTTTGATACCATCGTTGCTGCAGGGTTGAAATAGGAAGTATTAATCGGACAGTCAGTTGAATTATTTTTATTTGTCTGCAGGCTGGGGACTCTACACCTGAGGAACTTGCTAATGCCACACAAGTCCAAGGATCATACTTGCCGATTGTGAGGGAGAAGCCAACTGTTGAACTTGTTAAGGTTACAGATGAAATGAAGGCATTCAAAGCTTATTACAAGCTTCGCCTTGAGCGCACCAACAAGCGTCATTTGGGTGCTAGGCTCAAGAGGGCTGCTGAGGCAGAAAAGGAAGACAAGAAGTGA
Protein sequence

>MS.gene44018.t1

MVKHNNVIPNEHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTAKYNMKLRAGKGFSLEELKTAGIPKKLAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVVFPRRARKTKAGDSTPEELANATQVQGSYLPIVREKPTVELVKVTDEMKAFKAYYKLRLERTNKRHLGARLKRAAEAEKEDKK