Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69925.t1 | XP_013466087.1 | 99.5 | 207 | 1 | 0 | 1 | 207 | 1 | 207 | 1.20E-108 | 402.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69925.t1 | P41127 | 86.9 | 206 | 27 | 0 | 2 | 207 | 1 | 206 | 4.2e-99 | 362.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69925.t1 | B7FGS0 | 99.5 | 207 | 1 | 0 | 1 | 207 | 1 | 207 | 8.4e-109 | 402.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052666 | MS.gene69925 | 0.819272 | 1.27E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69925 | MS.gene84989 | PPI |
| MS.gene69925 | MS.gene44018 | PPI |
| MS.gene69925 | MS.gene70808 | PPI |
| MS.gene69925 | MS.gene050791 | PPI |
| MS.gene69925 | MS.gene72826 | PPI |
| MS.gene69925 | MS.gene92940 | PPI |
| MS.gene69925 | MS.gene005149 | PPI |
| MS.gene22784 | MS.gene69925 | PPI |
| MS.gene69925 | MS.gene072591 | PPI |
| MS.gene072589 | MS.gene69925 | PPI |
| MS.gene028085 | MS.gene69925 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69925.t1 | MTR_1g022165 | 99.517 | 207 | 1 | 0 | 1 | 207 | 1 | 207 | 1.30e-151 | 419 |
| MS.gene69925.t1 | MTR_7g111590 | 97.585 | 207 | 5 | 0 | 1 | 207 | 1 | 207 | 6.81e-150 | 414 |
| MS.gene69925.t1 | MTR_5g026750 | 96.618 | 207 | 7 | 0 | 1 | 207 | 1 | 207 | 1.38e-148 | 411 |
| MS.gene69925.t1 | MTR_7g111590 | 97.101 | 207 | 4 | 1 | 1 | 207 | 1 | 205 | 2.99e-147 | 407 |
| MS.gene69925.t1 | MTR_8g071810 | 65.432 | 81 | 28 | 0 | 104 | 184 | 67 | 147 | 9.36e-28 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69925.t1 | AT3G49010 | 86.911 | 191 | 25 | 0 | 2 | 192 | 1 | 191 | 3.06e-125 | 352 |
| MS.gene69925.t1 | AT3G49010 | 86.911 | 191 | 25 | 0 | 2 | 192 | 1 | 191 | 3.06e-125 | 352 |
| MS.gene69925.t1 | AT3G49010 | 86.911 | 191 | 25 | 0 | 2 | 192 | 1 | 191 | 3.06e-125 | 352 |
| MS.gene69925.t1 | AT3G49010 | 86.911 | 191 | 25 | 0 | 2 | 192 | 1 | 191 | 3.06e-125 | 352 |
| MS.gene69925.t1 | AT3G49010 | 86.911 | 191 | 25 | 0 | 2 | 192 | 1 | 191 | 3.06e-125 | 352 |
| MS.gene69925.t1 | AT3G49010 | 86.387 | 191 | 24 | 1 | 2 | 192 | 1 | 189 | 8.35e-123 | 346 |
| MS.gene69925.t1 | AT5G23900 | 84.946 | 186 | 28 | 0 | 2 | 187 | 1 | 186 | 1.11e-118 | 335 |
| MS.gene69925.t1 | AT3G48960 | 76.562 | 192 | 45 | 0 | 2 | 193 | 1 | 192 | 4.34e-108 | 309 |
| MS.gene69925.t1 | AT3G49010 | 62.304 | 191 | 19 | 1 | 2 | 192 | 1 | 138 | 4.03e-79 | 233 |
Find 67 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCTTCACTGCCTTCTTT+TGG | 0.308723 | 1.4:-65960164 | None:intergenic |
| TTGGTCTTGCGTGCGCGCCT+TGG | 0.314350 | 1.4:-65961309 | None:intergenic |
| TCGCCGCAAGAACCGTTCTT+TGG | 0.319042 | 1.4:+65961227 | MS.gene69925:CDS |
| TGCTTACGGAAGTGTTCATT+TGG | 0.319315 | 1.4:-65959710 | None:intergenic |
| ATGGTTGGAGCAAGCTTCTT+GGG | 0.323930 | 1.4:-65961186 | None:intergenic |
| GCGCACCAACAAGCGTCATT+TGG | 0.336081 | 1.4:+65961614 | MS.gene69925:CDS |
| GCCAACTGTTGAACTTGTTA+AGG | 0.359245 | 1.4:+65961542 | MS.gene69925:CDS |
| TGGTCTTGCGTGCGCGCCTT+GGG | 0.368380 | 1.4:-65961308 | None:intergenic |
| AATGGTTGGAGCAAGCTTCT+TGG | 0.375579 | 1.4:-65961187 | None:intergenic |
| CAAAGGTCCAGCGGTTGGCC+GGG | 0.376507 | 1.4:-65960190 | None:intergenic |
| CGCACCAACAAGCGTCATTT+GGG | 0.378501 | 1.4:+65961615 | MS.gene69925:CDS |
| TTCAAGAGAAAATCCTTTCC+CGG | 0.387347 | 1.4:-65960262 | None:intergenic |
| GCAGTTTGACCGTGAACAAT+TGG | 0.409288 | 1.4:-65960216 | None:intergenic |
| TCAAAGGTCCAGCGGTTGGC+CGG | 0.411486 | 1.4:-65960191 | None:intergenic |
| AAAGGTCCAGCGGTTGGCCG+GGG | 0.418246 | 1.4:-65960189 | None:intergenic |
| CATAGTTCTGCCAATGCTTA+CGG | 0.420637 | 1.4:-65959724 | None:intergenic |
| AGCAAGCTTCTTGGGGATAC+CGG | 0.426394 | 1.4:-65961178 | None:intergenic |
| GAGGGCTGCTGAGGCAGAAA+AGG | 0.445694 | 1.4:+65961650 | MS.gene69925:CDS |
| GCTTACGGAAGTGTTCATTT+GGG | 0.453054 | 1.4:-65959709 | None:intergenic |
| GGCCAACCGCTGGACCTTTG+AGG | 0.459880 | 1.4:+65960193 | MS.gene69925:CDS |
| CGCAAGAACCGTTCTTTGGA+GGG | 0.473099 | 1.4:+65961231 | MS.gene69925:CDS |
| AGCACCCAAATGACGCTTGT+TGG | 0.478609 | 1.4:-65961619 | None:intergenic |
| CCTTGGGAAAACAACCAACT+TGG | 0.479943 | 1.4:-65961292 | None:intergenic |
| TAGGAAAACCAGGAGACGCT+TGG | 0.484150 | 1.4:+65959772 | MS.gene69925:CDS |
| CCTTTGAGGCCAATTGTTCA+CGG | 0.485229 | 1.4:+65960207 | MS.gene69925:CDS |
| ACAAGCGTCATTTGGGTGCT+AGG | 0.489744 | 1.4:+65961622 | MS.gene69925:CDS |
| CCGCAAGAACCGTTCTTTGG+AGG | 0.494965 | 1.4:+65961230 | MS.gene69925:CDS |
| AGGAAAACCAGGAGACGCTT+GGG | 0.497890 | 1.4:+65959773 | MS.gene69925:CDS |
| GACGCTTGTTGGTGCGCTCA+AGG | 0.500487 | 1.4:-65961608 | None:intergenic |
| TTCTGTAGCCCGCCAAAAGA+AGG | 0.501386 | 1.4:+65960152 | MS.gene69925:intron |
| TAAGGTTACAGATGAAATGA+AGG | 0.502882 | 1.4:+65961560 | MS.gene69925:CDS |
| GTAATTACCCAAGCGTCTCC+TGG | 0.506062 | 1.4:-65959780 | None:intergenic |
| AAGAAGCTTGCTCCAACCAT+TGG | 0.507390 | 1.4:+65961189 | MS.gene69925:CDS |
| CAATCGGCAAGTATGATCCT+TGG | 0.510540 | 1.4:-65961509 | None:intergenic |
| GTTGGCTTCTCCCTCACAAT+CGG | 0.511949 | 1.4:-65961525 | None:intergenic |
| GTGGCATTAGCAAGTTCCTC+AGG | 0.518954 | 1.4:-65961480 | None:intergenic |
| AAGAACGGTTCTTGCGGCGA+TGG | 0.520566 | 1.4:-65961224 | None:intergenic |
| ATGAAACTTCGTGCCGGGAA+AGG | 0.523982 | 1.4:+65960249 | MS.gene69925:CDS |
| ACCTTAACAAGTTCAACAGT+TGG | 0.524264 | 1.4:-65961543 | None:intergenic |
| CCGTGAACAATTGGCCTCAA+AGG | 0.527396 | 1.4:-65960207 | None:intergenic |
| ATTTGGGTGCTAGGCTCAAG+AGG | 0.544127 | 1.4:+65961631 | MS.gene69925:CDS |
| GGCCTCAAAGGTCCAGCGGT+TGG | 0.553506 | 1.4:-65960195 | None:intergenic |
| GATCATACTTGCCGATTGTG+AGG | 0.555446 | 1.4:+65961514 | MS.gene69925:CDS |
| ACAACATGAAACTTCGTGCC+GGG | 0.563845 | 1.4:+65960244 | MS.gene69925:CDS |
| ATCAACCAGCTAGGAAAACC+AGG | 0.567237 | 1.4:+65959762 | MS.gene69925:CDS |
| TAGGCTCAAGAGGGCTGCTG+AGG | 0.568695 | 1.4:+65961641 | MS.gene69925:CDS |
| AAGGTCCAGCGGTTGGCCGG+GGG | 0.569118 | 1.4:-65960188 | None:intergenic |
| TACAACATGAAACTTCGTGC+CGG | 0.570733 | 1.4:+65960243 | MS.gene69925:CDS |
| GAAAACATACAAGGCCAAGT+TGG | 0.571763 | 1.4:+65961278 | MS.gene69925:CDS |
| ATGAACACTTCCGTAAGCAT+TGG | 0.574424 | 1.4:+65959714 | MS.gene69925:CDS |
| TCAACAGAAATGCCAATGGT+TGG | 0.577031 | 1.4:-65961201 | None:intergenic |
| CCTCCAAAGAACGGTTCTTG+CGG | 0.586577 | 1.4:-65961230 | None:intergenic |
| CATGGTTCAATCAACCAGCT+AGG | 0.591929 | 1.4:+65959753 | MS.gene69925:CDS |
| CTTGCAGACCCTCCAAAGAA+CGG | 0.595271 | 1.4:-65961239 | None:intergenic |
| AACATTGTTGTGCTTCACCA+TGG | 0.595442 | 1.4:-65959684 | None:intergenic |
| ATCATACTTGCCGATTGTGA+GGG | 0.601270 | 1.4:+65961515 | MS.gene69925:CDS |
| TGGTTGGAGCAAGCTTCTTG+GGG | 0.611973 | 1.4:-65961185 | None:intergenic |
| GCTAATGCCACACAAGTCCA+AGG | 0.623000 | 1.4:+65961492 | MS.gene69925:CDS |
| AAGGCGCGCACGCAAGACCA+AGG | 0.626116 | 1.4:+65961311 | MS.gene69925:CDS |
| GTCTGCAAGCTAATGTGCAG+AGG | 0.628654 | 1.4:+65961253 | MS.gene69925:CDS |
| TTTGGGTGCTAGGCTCAAGA+GGG | 0.631845 | 1.4:+65961632 | MS.gene69925:CDS |
| GGCAGAACTATGTCAAAACA+TGG | 0.632555 | 1.4:+65959735 | MS.gene69925:CDS |
| GGCTGGGGACTCTACACCTG+AGG | 0.639995 | 1.4:+65961464 | MS.gene69925:intron |
| GCAGAGGCTGAAAACATACA+AGG | 0.656774 | 1.4:+65961269 | MS.gene69925:CDS |
| ATGGTCAACAGAAATGCCAA+TGG | 0.663073 | 1.4:-65961205 | None:intergenic |
| AATTGGCCTCAAAGGTCCAG+CGG | 0.684475 | 1.4:-65960199 | None:intergenic |
| GTATGATCCTTGGACTTGTG+TGG | 0.704331 | 1.4:-65961499 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAAGTTGTAAAAATAT+AGG | - | chr1.4:65959805-65959824 | None:intergenic | 10.0% |
| !! | AAGTTATAATATGTAGTTTA+TGG | - | chr1.4:65961131-65961150 | None:intergenic | 15.0% |
| !! | ATAAAAATAATTCAACTGAC+TGG | - | chr1.4:65961435-65961454 | None:intergenic | 20.0% |
| !! | ATAAACTAAAATCATCATTG+AGG | - | chr1.4:65961348-65961367 | None:intergenic | 20.0% |
| !! | CATATGACTAATTAATTTCT+GGG | + | chr1.4:65960537-65960556 | MS.gene69925:intron | 20.0% |
| !! | TAACATATAGTTCTTGTAAT+GGG | + | chr1.4:65960703-65960722 | MS.gene69925:intron | 20.0% |
| !! | TCATATGACTAATTAATTTC+TGG | + | chr1.4:65960536-65960555 | MS.gene69925:intron | 20.0% |
| !!! | AATTATTTTTATTTGTCTGC+AGG | + | chr1.4:65961443-65961462 | MS.gene69925:intron | 20.0% |
| !!! | CTTGATTACTTTTGTTTTTA+TGG | + | chr1.4:65961148-65961167 | MS.gene69925:intron | 20.0% |
| !!! | TAATAATGGGTTTATACATA+TGG | + | chr1.4:65960968-65960987 | MS.gene69925:intron | 20.0% |
| !!! | TTGAAATAGGAAGTATTAAT+CGG | + | chr1.4:65961409-65961428 | MS.gene69925:intron | 20.0% |
| ! | AATAGCCATATGTAAAAACT+TGG | - | chr1.4:65961001-65961020 | None:intergenic | 25.0% |
| ! | ATATTAGATAGAACTAATGC+AGG | - | chr1.4:65960438-65960457 | None:intergenic | 25.0% |
| ! | ATCTAATATAATCATTGTCG+TGG | + | chr1.4:65960449-65960468 | MS.gene69925:intron | 25.0% |
| ! | GTAACATATAGTTCTTGTAA+TGG | + | chr1.4:65960702-65960721 | MS.gene69925:intron | 25.0% |
| ! | TATTAGATAGAACTAATGCA+GGG | - | chr1.4:65960437-65960456 | None:intergenic | 25.0% |
| !! | CCTACAGTTTAATCTATTTT+CGG | - | chr1.4:65960602-65960621 | None:intergenic | 25.0% |
| !! | CTACAGTTTAATCTATTTTC+GGG | - | chr1.4:65960601-65960620 | None:intergenic | 25.0% |
| !! | TAATGATCGGTTTATACATA+TGG | + | chr1.4:65960915-65960934 | MS.gene69925:intron | 25.0% |
| AGATTAAACTGTAGGAAAGA+TGG | + | chr1.4:65960607-65960626 | MS.gene69925:intron | 30.0% | |
| AGTTGAAGACTATAAAAGTC+TGG | - | chr1.4:65961102-65961121 | None:intergenic | 30.0% | |
| CAAACAAACAATTTAAGCCA+CGG | - | chr1.4:65959967-65959986 | None:intergenic | 30.0% | |
| CAAACATGTCAAAAAACATG+AGG | - | chr1.4:65959878-65959897 | None:intergenic | 30.0% | |
| CCGAAAATAGATTAAACTGT+AGG | + | chr1.4:65960599-65960618 | MS.gene69925:intron | 30.0% | |
| GCATATGACACTTAAATGAT+GGG | + | chr1.4:65960782-65960801 | MS.gene69925:intron | 30.0% | |
| TAAGGTTACAGATGAAATGA+AGG | + | chr1.4:65961560-65961579 | MS.gene69925:CDS | 30.0% | |
| TACTCTCAAGTTACTAAACA+TGG | - | chr1.4:65960667-65960686 | None:intergenic | 30.0% | |
| TGCATATGACACTTAAATGA+TGG | + | chr1.4:65960781-65960800 | MS.gene69925:intron | 30.0% | |
| TTGAGGTTCTTATATTACCT+TGG | - | chr1.4:65961331-65961350 | None:intergenic | 30.0% | |
| TTTAGCGTAAAAACTATAGC+AGG | - | chr1.4:65960381-65960400 | None:intergenic | 30.0% | |
| ! | ATGGCTCTACACTTTAATAA+TGG | + | chr1.4:65960954-65960973 | MS.gene69925:intron | 30.0% |
| ! | ATTTTCTCTTGAAGAGTTGA+AGG | + | chr1.4:65960272-65960291 | MS.gene69925:CDS | 30.0% |
| ! | TGACACCAAGTTTTTACATA+TGG | + | chr1.4:65960993-65961012 | MS.gene69925:intron | 30.0% |
| ! | TGGCTCTACACTTTAATAAT+GGG | + | chr1.4:65960955-65960974 | MS.gene69925:intron | 30.0% |
| ! | TTTTACGCTAAAGACTACAT+TGG | + | chr1.4:65960389-65960408 | MS.gene69925:intron | 30.0% |
| !! | AAACGATGGGTTTTTACATA+TGG | + | chr1.4:65960882-65960901 | MS.gene69925:intron | 30.0% |
| !! | AAATGATGGGTTTATACACA+TGG | + | chr1.4:65960795-65960814 | MS.gene69925:intron | 30.0% |
| !! | TGGATGATGGTTTTTACATA+TGG | + | chr1.4:65960935-65960954 | MS.gene69925:intron | 30.0% |
| !!! | CTAGAGTTCAAGTTTTATTC+AGG | - | chr1.4:65961072-65961091 | None:intergenic | 30.0% |
| !!! | CTCATGTTTTTTGACATGTT+TGG | + | chr1.4:65959876-65959895 | MS.gene69925:intron | 30.0% |
| AAAACCCATCGTTTAAGTGT+CGG | - | chr1.4:65960843-65960862 | None:intergenic | 35.0% | |
| AAACTGTAGGAAAGATGGTA+CGG | + | chr1.4:65960612-65960631 | MS.gene69925:intron | 35.0% | |
| ACCTTAACAAGTTCAACAGT+TGG | - | chr1.4:65961546-65961565 | None:intergenic | 35.0% | |
| CGGTTTATACATATGGATGA+TGG | + | chr1.4:65960922-65960941 | MS.gene69925:intron | 35.0% | |
| GGTTTATACACATGGATGAT+GGG | + | chr1.4:65960803-65960822 | MS.gene69925:intron | 35.0% | |
| TCTGCAGTGTCTTGAATTAT+AGG | + | chr1.4:65960027-65960046 | MS.gene69925:intron | 35.0% | |
| TGAAGACTATAAAAGTCTGG+AGG | - | chr1.4:65961099-65961118 | None:intergenic | 35.0% | |
| TGGCTAGACACTTTAATGAT+CGG | + | chr1.4:65960902-65960921 | MS.gene69925:intron | 35.0% | |
| TTCAAGAGAAAATCCTTTCC+CGG | - | chr1.4:65960265-65960284 | None:intergenic | 35.0% | |
| ! | AAATCTTCACTGCCTTCTTT+TGG | - | chr1.4:65960167-65960186 | None:intergenic | 35.0% |
| ! | CTGTGTAGATGTTACTTCAT+GGG | + | chr1.4:65960333-65960352 | MS.gene69925:intron | 35.0% |
| ! | TCTGTGTAGATGTTACTTCA+TGG | + | chr1.4:65960332-65960351 | MS.gene69925:intron | 35.0% |
| !! | AGCTTGTTGAACTTTAACTG+TGG | + | chr1.4:65960301-65960320 | MS.gene69925:intron | 35.0% |
| !! | ATTTTTATTTGTCTGCAGGC+TGG | + | chr1.4:65961447-65961466 | MS.gene69925:intron | 35.0% |
| !! | TTTTTATTTGTCTGCAGGCT+GGG | + | chr1.4:65961448-65961467 | MS.gene69925:intron | 35.0% |
| !!! | GGATGATGGGTTTTTACATA+TGG | + | chr1.4:65960816-65960835 | MS.gene69925:intron | 35.0% |
| !!! | TTTTTTGACATGTTTGTCCG+TGG | + | chr1.4:65959947-65959966 | MS.gene69925:intron | 35.0% |
| AAACCCATCGTTTAAGTGTC+GGG | - | chr1.4:65960875-65960894 | None:intergenic | 40.0% | |
| ATGAACACTTCCGTAAGCAT+TGG | + | chr1.4:65959714-65959733 | MS.gene69925:CDS | 40.0% | |
| ATGGCTCAACACTTAAACGA+TGG | + | chr1.4:65960835-65960854 | MS.gene69925:intron | 40.0% | |
| ATGGTCAACAGAAATGCCAA+TGG | - | chr1.4:65961208-65961227 | None:intergenic | 40.0% | |
| CAACGATGGTATCAAAGCTA+AGG | - | chr1.4:65961381-65961400 | None:intergenic | 40.0% | |
| GAAAACATACAAGGCCAAGT+TGG | + | chr1.4:65961278-65961297 | MS.gene69925:CDS | 40.0% | |
| GGCACAGTTGAATATCAAAC+AGG | - | chr1.4:65960580-65960599 | None:intergenic | 40.0% | |
| GGCAGAACTATGTCAAAACA+TGG | + | chr1.4:65959735-65959754 | MS.gene69925:CDS | 40.0% | |
| GGGTTTATACACATGGATGA+TGG | + | chr1.4:65960802-65960821 | MS.gene69925:intron | 40.0% | |
| TACAACATGAAACTTCGTGC+CGG | + | chr1.4:65960243-65960262 | MS.gene69925:CDS | 40.0% | |
| TCAACAGAAATGCCAATGGT+TGG | - | chr1.4:65961204-65961223 | None:intergenic | 40.0% | |
| TGGCTCAACACTTAAACGAT+GGG | + | chr1.4:65960836-65960855 | MS.gene69925:intron | 40.0% | |
| ! | ATCATACTTGCCGATTGTGA+GGG | + | chr1.4:65961515-65961534 | MS.gene69925:CDS | 40.0% |
| ! | CATAGTTCTGCCAATGCTTA+CGG | - | chr1.4:65959727-65959746 | None:intergenic | 40.0% |
| !! | GCAGGGATGCTTATTTTCAT+AGG | - | chr1.4:65960420-65960439 | None:intergenic | 40.0% |
| !! | GCCAACTGTTGAACTTGTTA+AGG | + | chr1.4:65961542-65961561 | MS.gene69925:CDS | 40.0% |
| !! | GCTTACGGAAGTGTTCATTT+GGG | - | chr1.4:65959712-65959731 | None:intergenic | 40.0% |
| !! | TGCTTACGGAAGTGTTCATT+TGG | - | chr1.4:65959713-65959732 | None:intergenic | 40.0% |
| !! | TTTTATTTGTCTGCAGGCTG+GGG | + | chr1.4:65961449-65961468 | MS.gene69925:intron | 40.0% |
| !!! | TTGTTTTTATGGCAGACTGC+CGG | + | chr1.4:65961159-65961178 | MS.gene69925:intron | 40.0% |
| AATGGTTGGAGCAAGCTTCT+TGG | - | chr1.4:65961190-65961209 | None:intergenic | 45.0% | |
| ACAACATGAAACTTCGTGCC+GGG | + | chr1.4:65960244-65960263 | MS.gene69925:CDS | 45.0% | |
| ATCAACCAGCTAGGAAAACC+AGG | + | chr1.4:65959762-65959781 | MS.gene69925:CDS | 45.0% | |
| ATGACCCGACACTTAAACGA+TGG | + | chr1.4:65960868-65960887 | MS.gene69925:intron | 45.0% | |
| ATGGTTGGAGCAAGCTTCTT+GGG | - | chr1.4:65961189-65961208 | None:intergenic | 45.0% | |
| CAATCGGCAAGTATGATCCT+TGG | - | chr1.4:65961512-65961531 | None:intergenic | 45.0% | |
| CATGGTTCAATCAACCAGCT+AGG | + | chr1.4:65959753-65959772 | MS.gene69925:CDS | 45.0% | |
| CCTTGGGAAAACAACCAACT+TGG | - | chr1.4:65961295-65961314 | None:intergenic | 45.0% | |
| GCAGAGGCTGAAAACATACA+AGG | + | chr1.4:65961269-65961288 | MS.gene69925:CDS | 45.0% | |
| GCAGTTTGACCGTGAACAAT+TGG | - | chr1.4:65960219-65960238 | None:intergenic | 45.0% | |
| GTATGATCCTTGGACTTGTG+TGG | - | chr1.4:65961502-65961521 | None:intergenic | 45.0% | |
| TGACCCGACACTTAAACGAT+GGG | + | chr1.4:65960869-65960888 | MS.gene69925:intron | 45.0% | |
| TTGATACCATCGTTGCTGCA+GGG | + | chr1.4:65961386-65961405 | MS.gene69925:intron | 45.0% | |
| TTTGATACCATCGTTGCTGC+AGG | + | chr1.4:65961385-65961404 | MS.gene69925:intron | 45.0% | |
| ! | AAGAAGCTTGCTCCAACCAT+TGG | + | chr1.4:65961189-65961208 | MS.gene69925:CDS | 45.0% |
| ! | GATCATACTTGCCGATTGTG+AGG | + | chr1.4:65961514-65961533 | MS.gene69925:CDS | 45.0% |
| ! | TCTTCACTGCCTTCTTTTGG+CGG | - | chr1.4:65960164-65960183 | None:intergenic | 45.0% |
| !! | CCTTTGAGGCCAATTGTTCA+CGG | + | chr1.4:65960207-65960226 | MS.gene69925:CDS | 45.0% |
| !!! | CCAAGTTGGTTGTTTTCCCA+AGG | + | chr1.4:65961292-65961311 | MS.gene69925:CDS | 45.0% |
| ACAAGCGTCATTTGGGTGCT+AGG | + | chr1.4:65961622-65961641 | MS.gene69925:CDS | 50.0% | |
| AGCAAGCTTCTTGGGGATAC+CGG | - | chr1.4:65961181-65961200 | None:intergenic | 50.0% | |
| AGCACCCAAATGACGCTTGT+TGG | - | chr1.4:65961622-65961641 | None:intergenic | 50.0% | |
| AGGAAAACCAGGAGACGCTT+GGG | + | chr1.4:65959773-65959792 | MS.gene69925:CDS | 50.0% | |
| ATGAAACTTCGTGCCGGGAA+AGG | + | chr1.4:65960249-65960268 | MS.gene69925:CDS | 50.0% | |
| ATTTGGGTGCTAGGCTCAAG+AGG | + | chr1.4:65961631-65961650 | MS.gene69925:CDS | 50.0% | |
| CCTCCAAAGAACGGTTCTTG+CGG | - | chr1.4:65961233-65961252 | None:intergenic | 50.0% | |
| CGCAAGAACCGTTCTTTGGA+GGG | + | chr1.4:65961231-65961250 | MS.gene69925:CDS | 50.0% | |
| CGCACCAACAAGCGTCATTT+GGG | + | chr1.4:65961615-65961634 | MS.gene69925:CDS | 50.0% | |
| CGTTGCTGCAGGGTTGAAAT+AGG | + | chr1.4:65961396-65961415 | MS.gene69925:intron | 50.0% | |
| CTTGCAGACCCTCCAAAGAA+CGG | - | chr1.4:65961242-65961261 | None:intergenic | 50.0% | |
| GCTAATGCCACACAAGTCCA+AGG | + | chr1.4:65961492-65961511 | MS.gene69925:CDS | 50.0% | |
| GGGCTACAGAAATCACAGCA+CGG | - | chr1.4:65960143-65960162 | None:intergenic | 50.0% | |
| GTAATTACCCAAGCGTCTCC+TGG | - | chr1.4:65959783-65959802 | None:intergenic | 50.0% | |
| GTCTGCAAGCTAATGTGCAG+AGG | + | chr1.4:65961253-65961272 | MS.gene69925:CDS | 50.0% | |
| GTGGCATTAGCAAGTTCCTC+AGG | - | chr1.4:65961483-65961502 | None:intergenic | 50.0% | |
| TAGGAAAACCAGGAGACGCT+TGG | + | chr1.4:65959772-65959791 | MS.gene69925:CDS | 50.0% | |
| TGGTTGGAGCAAGCTTCTTG+GGG | - | chr1.4:65961188-65961207 | None:intergenic | 50.0% | |
| TTCTGTAGCCCGCCAAAAGA+AGG | + | chr1.4:65960152-65960171 | MS.gene69925:intron | 50.0% | |
| TTTCAACCCTGCAGCAACGA+TGG | - | chr1.4:65961395-65961414 | None:intergenic | 50.0% | |
| TTTGGGTGCTAGGCTCAAGA+GGG | + | chr1.4:65961632-65961651 | MS.gene69925:CDS | 50.0% | |
| ! | AATTGGCCTCAAAGGTCCAG+CGG | - | chr1.4:65960202-65960221 | None:intergenic | 50.0% |
| ! | AGGCAGTGAAGATTTTCCCC+CGG | + | chr1.4:65960172-65960191 | MS.gene69925:CDS | 50.0% |
| ! | CCGTGAACAATTGGCCTCAA+AGG | - | chr1.4:65960210-65960229 | None:intergenic | 50.0% |
| ! | CTTCACTGCCTTCTTTTGGC+GGG | - | chr1.4:65960163-65960182 | None:intergenic | 50.0% |
| ! | GTTGGCTTCTCCCTCACAAT+CGG | - | chr1.4:65961528-65961547 | None:intergenic | 50.0% |
| AAGAACGGTTCTTGCGGCGA+TGG | - | chr1.4:65961227-65961246 | None:intergenic | 55.0% | |
| CCGCAAGAACCGTTCTTTGG+AGG | + | chr1.4:65961230-65961249 | MS.gene69925:CDS | 55.0% | |
| GCGCACCAACAAGCGTCATT+TGG | + | chr1.4:65961614-65961633 | MS.gene69925:CDS | 55.0% | |
| TCGCCGCAAGAACCGTTCTT+TGG | + | chr1.4:65961227-65961246 | MS.gene69925:CDS | 55.0% | |
| !! | CGTCTCCTGGTTTTCCTAGC+TGG | - | chr1.4:65959770-65959789 | None:intergenic | 55.0% |
| GAGGGCTGCTGAGGCAGAAA+AGG | + | chr1.4:65961650-65961669 | MS.gene69925:CDS | 60.0% | |
| TAGGCTCAAGAGGGCTGCTG+AGG | + | chr1.4:65961641-65961660 | MS.gene69925:CDS | 60.0% | |
| TCAAAGGTCCAGCGGTTGGC+CGG | - | chr1.4:65960194-65960213 | None:intergenic | 60.0% | |
| ! | GACGCTTGTTGGTGCGCTCA+AGG | - | chr1.4:65961611-65961630 | None:intergenic | 60.0% |
| AAGGCGCGCACGCAAGACCA+AGG | + | chr1.4:65961311-65961330 | MS.gene69925:CDS | 65.0% | |
| GGCCAACCGCTGGACCTTTG+AGG | + | chr1.4:65960193-65960212 | MS.gene69925:CDS | 65.0% | |
| GGCCTCAAAGGTCCAGCGGT+TGG | - | chr1.4:65960198-65960217 | None:intergenic | 65.0% | |
| GGCTGGGGACTCTACACCTG+AGG | + | chr1.4:65961464-65961483 | MS.gene69925:intron | 65.0% | |
| ! | AAAGGTCCAGCGGTTGGCCG+GGG | - | chr1.4:65960192-65960211 | None:intergenic | 65.0% |
| ! | ATTTTCCCCCGGCCAACCGC+TGG | + | chr1.4:65960183-65960202 | MS.gene69925:CDS | 65.0% |
| ! | CAAAGGTCCAGCGGTTGGCC+GGG | - | chr1.4:65960193-65960212 | None:intergenic | 65.0% |
| ! | TGGTCTTGCGTGCGCGCCTT+GGG | - | chr1.4:65961311-65961330 | None:intergenic | 65.0% |
| !! | TTGGTCTTGCGTGCGCGCCT+TGG | - | chr1.4:65961312-65961331 | None:intergenic | 65.0% |
| ! | AAGGTCCAGCGGTTGGCCGG+GGG | - | chr1.4:65960191-65960210 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 65959686 | 65961686 | 65959686 | ID=MS.gene69925 |
| chr1.4 | mRNA | 65959686 | 65961686 | 65959686 | ID=MS.gene69925.t1;Parent=MS.gene69925 |
| chr1.4 | exon | 65959686 | 65959794 | 65959686 | ID=MS.gene69925.t1.exon1;Parent=MS.gene69925.t1 |
| chr1.4 | CDS | 65959686 | 65959794 | 65959686 | ID=cds.MS.gene69925.t1;Parent=MS.gene69925.t1 |
| chr1.4 | exon | 65960160 | 65960293 | 65960160 | ID=MS.gene69925.t1.exon2;Parent=MS.gene69925.t1 |
| chr1.4 | CDS | 65960160 | 65960293 | 65960160 | ID=cds.MS.gene69925.t1;Parent=MS.gene69925.t1 |
| chr1.4 | exon | 65961174 | 65961332 | 65961174 | ID=MS.gene69925.t1.exon3;Parent=MS.gene69925.t1 |
| chr1.4 | CDS | 65961174 | 65961332 | 65961174 | ID=cds.MS.gene69925.t1;Parent=MS.gene69925.t1 |
| chr1.4 | exon | 65961465 | 65961686 | 65961465 | ID=MS.gene69925.t1.exon4;Parent=MS.gene69925.t1 |
| chr1.4 | CDS | 65961465 | 65961686 | 65961465 | ID=cds.MS.gene69925.t1;Parent=MS.gene69925.t1 |
| Gene Sequence |
| Protein sequence |
