Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22784.t1 | XP_003626150.1 | 99 | 206 | 2 | 0 | 1 | 206 | 1 | 206 | 7.50E-108 | 399.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22784.t1 | P41127 | 87.3 | 205 | 26 | 0 | 2 | 206 | 1 | 205 | 1.9e-99 | 363.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22784.t1 | G7KWF6 | 99.0 | 206 | 2 | 0 | 1 | 206 | 1 | 206 | 5.4e-108 | 399.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene22784 | 0.863999 | 1.67E-64 | -1.69E-46 |
| MS.gene050134 | MS.gene22784 | 0.887685 | 1.15E-72 | -1.69E-46 |
| MS.gene050290 | MS.gene22784 | 0.819689 | 1.02E-52 | -1.69E-46 |
| MS.gene050791 | MS.gene22784 | 0.988891 | 7.88E-176 | -1.69E-46 |
| MS.gene050912 | MS.gene22784 | 0.876566 | 1.26E-68 | -1.69E-46 |
| MS.gene051904 | MS.gene22784 | 0.807032 | 6.16E-50 | -1.69E-46 |
| MS.gene051984 | MS.gene22784 | 0.883881 | 3.08E-71 | -1.69E-46 |
| MS.gene052412 | MS.gene22784 | 0.832088 | 1.15E-55 | -1.69E-46 |
| MS.gene052664 | MS.gene22784 | 0.821051 | 4.96E-53 | -1.69E-46 |
| MS.gene053224 | MS.gene22784 | 0.879086 | 1.66E-69 | -1.69E-46 |
| MS.gene055232 | MS.gene22784 | 0.827761 | 1.31E-54 | -1.69E-46 |
| MS.gene056257 | MS.gene22784 | 0.808 | 3.84E-50 | -1.69E-46 |
| MS.gene056917 | MS.gene22784 | 0.862176 | 6.10E-64 | -1.69E-46 |
| MS.gene057092 | MS.gene22784 | 0.852929 | 3.34E-61 | -1.69E-46 |
| MS.gene057272 | MS.gene22784 | 0.900576 | 6.38E-78 | -1.69E-46 |
| MS.gene057641 | MS.gene22784 | 0.824286 | 8.77E-54 | -1.69E-46 |
| MS.gene057643 | MS.gene22784 | 0.848936 | 4.46E-60 | -1.69E-46 |
| MS.gene060483 | MS.gene22784 | 0.826637 | 2.43E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22784 | MS.gene028085 | PPI |
| MS.gene22784 | MS.gene84989 | PPI |
| MS.gene22784 | MS.gene44018 | PPI |
| MS.gene22784 | MS.gene70808 | PPI |
| MS.gene22784 | MS.gene050791 | PPI |
| MS.gene22784 | MS.gene72826 | PPI |
| MS.gene22784 | MS.gene92940 | PPI |
| MS.gene22784 | MS.gene005149 | PPI |
| MS.gene22784 | MS.gene69925 | PPI |
| MS.gene22784 | MS.gene072591 | PPI |
| MS.gene028085 | MS.gene22784 | PPI |
| MS.gene22784 | MS.gene072589 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22784.t1 | MTR_7g111590 | 99.029 | 206 | 2 | 0 | 1 | 206 | 1 | 206 | 1.10e-150 | 416 |
| MS.gene22784.t1 | MTR_5g026750 | 98.544 | 206 | 3 | 0 | 1 | 206 | 1 | 206 | 3.38e-150 | 415 |
| MS.gene22784.t1 | MTR_1g022165 | 97.573 | 206 | 5 | 0 | 1 | 206 | 1 | 206 | 9.61e-149 | 411 |
| MS.gene22784.t1 | MTR_7g111590 | 98.058 | 206 | 2 | 1 | 1 | 206 | 1 | 204 | 2.09e-147 | 408 |
| MS.gene22784.t1 | MTR_8g071810 | 64.198 | 81 | 29 | 0 | 104 | 184 | 67 | 147 | 3.27e-27 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22784.t1 | AT3G49010 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.75e-126 | 355 |
| MS.gene22784.t1 | AT3G49010 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.75e-126 | 355 |
| MS.gene22784.t1 | AT3G49010 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.75e-126 | 355 |
| MS.gene22784.t1 | AT3G49010 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.75e-126 | 355 |
| MS.gene22784.t1 | AT3G49010 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.75e-126 | 355 |
| MS.gene22784.t1 | AT3G49010 | 86.387 | 191 | 24 | 1 | 2 | 192 | 1 | 189 | 4.64e-123 | 347 |
| MS.gene22784.t1 | AT5G23900 | 85.484 | 186 | 27 | 0 | 2 | 187 | 1 | 186 | 2.39e-119 | 337 |
| MS.gene22784.t1 | AT3G48960 | 77.083 | 192 | 44 | 0 | 2 | 193 | 1 | 192 | 5.44e-109 | 311 |
| MS.gene22784.t1 | AT3G49010 | 61.257 | 191 | 21 | 1 | 2 | 192 | 1 | 138 | 3.54e-78 | 231 |
Find 59 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGAAATGAAGGCATTTA+AGG | 0.167170 | 7.4:-4839446 | MS.gene22784:CDS |
| CGTCTTCTCGTCTTCCTTGC+AGG | 0.238053 | 7.4:+4841130 | None:intergenic |
| TTGACCTTGCGTGCACGTCT+TGG | 0.342253 | 7.4:+4839709 | None:intergenic |
| GCGAACAAACAAACGCCATT+TGG | 0.357834 | 7.4:-4839401 | MS.gene22784:CDS |
| CGAACAAACAAACGCCATTT+GGG | 0.361720 | 7.4:-4839400 | MS.gene22784:CDS |
| AGTGGTCCAGCTGTAGGCCT+TGG | 0.374314 | 7.4:+4840960 | None:intergenic |
| TGCTTGCGGAAGTGTTCATT+AGG | 0.386045 | 7.4:+4841187 | None:intergenic |
| TGACCTTGCGTGCACGTCTT+GGG | 0.387927 | 7.4:+4839710 | None:intergenic |
| TGAGTCTGTCCATGAACAAT+AGG | 0.403921 | 7.4:+4840933 | None:intergenic |
| AGAAATACAACATGAAACTA+AGG | 0.404501 | 7.4:-4840911 | MS.gene22784:CDS |
| CTCGGCAGCCCTCTTCAGTC+TGG | 0.408929 | 7.4:+4839375 | None:intergenic |
| CCACTCAGGCCTATTGTTCA+TGG | 0.419917 | 7.4:-4840942 | MS.gene22784:CDS |
| CTTCTCCCTTGAGGAGTTGA+AGG | 0.436371 | 7.4:-4840877 | MS.gene22784:intron |
| GTAGCATTTGCTAGTTCCTC+AGG | 0.441712 | 7.4:+4839535 | None:intergenic |
| TCTTCAGTCTGGCACCCAAA+TGG | 0.461938 | 7.4:+4839386 | None:intergenic |
| GCTTGCGGAAGTGTTCATTA+GGG | 0.463786 | 7.4:+4841188 | None:intergenic |
| TAAGATTACAAATGAAATGA+AGG | 0.465235 | 7.4:-4839455 | MS.gene22784:CDS |
| GATGGCTTCTCCCTCACAAT+TGG | 0.470493 | 7.4:+4839490 | None:intergenic |
| GAGGGCTGCCGAGGCAGAGA+AGG | 0.474906 | 7.4:-4839365 | MS.gene22784:CDS |
| CTTGTCTTCCTTCTCTGCCT+CGG | 0.482926 | 7.4:+4839357 | None:intergenic |
| GTGGTCCAGCTGTAGGCCTT+GGG | 0.485461 | 7.4:+4840961 | None:intergenic |
| TCGCCGCAAGAACCGATCCT+TGG | 0.500226 | 7.4:-4839791 | MS.gene22784:CDS |
| CTTGCAGACCTTCCAAGGAT+CGG | 0.513686 | 7.4:+4839779 | None:intergenic |
| GCAAATGCTACACAGGTTCA+AGG | 0.515568 | 7.4:-4839523 | MS.gene22784:CDS |
| TTCTCGTCTTCCTTGCAGGT+TGG | 0.518598 | 7.4:+4841134 | None:intergenic |
| TCGACAGAAATACCAATAGT+TGG | 0.524260 | 7.4:+4839817 | None:intergenic |
| TGTTTACCTTCAACTCCTCA+AGG | 0.536157 | 7.4:+4840871 | None:intergenic |
| GTTGGCTTGCAGACCTTCCA+AGG | 0.544997 | 7.4:+4839774 | None:intergenic |
| CTTCCCAAGACGTGCACGCA+AGG | 0.546682 | 7.4:-4839713 | MS.gene22784:CDS |
| ATGAACACTTCCGCAAGCAT+TGG | 0.548841 | 7.4:-4841183 | MS.gene22784:CDS |
| ATGAAACTAAGGGCTGGTAA+AGG | 0.560135 | 7.4:-4840900 | MS.gene22784:CDS |
| GAAATACAACATGAAACTAA+GGG | 0.563936 | 7.4:-4840910 | MS.gene22784:CDS |
| AGGAAGACGAGAAGACGCTT+AGG | 0.564086 | 7.4:-4841124 | MS.gene22784:intron |
| TCTTGGGAAGACGACCAACT+TGG | 0.564678 | 7.4:+4839726 | None:intergenic |
| AAGACGTGCACGCAAGGTCA+AGG | 0.565249 | 7.4:-4839707 | MS.gene22784:intron |
| TACAACATGAAACTAAGGGC+TGG | 0.568361 | 7.4:-4840906 | MS.gene22784:CDS |
| TTCATACTTACCAATTGTGA+GGG | 0.574179 | 7.4:-4839500 | MS.gene22784:CDS |
| CAGACTGAAGAGGGCTGCCG+AGG | 0.574750 | 7.4:-4839374 | MS.gene22784:CDS |
| CGCAAGAACCGATCCTTGGA+AGG | 0.582614 | 7.4:-4839787 | MS.gene22784:CDS |
| GTCTGCAAGCCAACGTGCAG+AGG | 0.583501 | 7.4:-4839765 | MS.gene22784:CDS |
| CTTCCAAGGATCGGTTCTTG+CGG | 0.585506 | 7.4:+4839788 | None:intergenic |
| TGGTAAAGGCTTCTCCCTTG+AGG | 0.585769 | 7.4:-4840886 | MS.gene22784:CDS |
| AGGCCTTGGGAAAATCTTCA+CGG | 0.587332 | 7.4:+4840974 | None:intergenic |
| GTTCATACTTACCAATTGTG+AGG | 0.591073 | 7.4:-4839501 | MS.gene22784:CDS |
| ATTTGGGTGCCAGACTGAAG+AGG | 0.592370 | 7.4:-4839384 | MS.gene22784:CDS |
| GGCTGGTGATTCCACTCCTG+AGG | 0.595885 | 7.4:-4839551 | MS.gene22784:CDS |
| GAAGACATACAAGGCCAAGT+TGG | 0.599063 | 7.4:-4839740 | MS.gene22784:CDS |
| GGCCTACAGCTGGACCACTC+AGG | 0.602263 | 7.4:-4840956 | MS.gene22784:CDS |
| ATCTTAACAAGCTCTACAGA+TGG | 0.608105 | 7.4:+4839472 | None:intergenic |
| TTTGGGTGCCAGACTGAAGA+GGG | 0.608247 | 7.4:-4839383 | MS.gene22784:CDS |
| GGCAAAACTATGTCAAGACA+TGG | 0.612396 | 7.4:-4841162 | MS.gene22784:CDS |
| ATTTGCTAGTTCCTCAGGAG+TGG | 0.614969 | 7.4:+4839540 | None:intergenic |
| TGTCTTCAGCCTCTGCACGT+TGG | 0.625495 | 7.4:+4839756 | None:intergenic |
| GTTTACCTTCAACTCCTCAA+GGG | 0.627618 | 7.4:+4840872 | None:intergenic |
| GGCCTGAGTGGTCCAGCTGT+AGG | 0.635974 | 7.4:+4840954 | None:intergenic |
| GGAACTAGCAAATGCTACAC+AGG | 0.641783 | 7.4:-4839530 | MS.gene22784:CDS |
| CATGGTTTAACCAACCTGCA+AGG | 0.654567 | 7.4:-4841144 | MS.gene22784:CDS |
| CCATGAACAATAGGCCTGAG+TGG | 0.655173 | 7.4:+4840942 | None:intergenic |
| GCAGAGGCTGAAGACATACA+AGG | 0.685449 | 7.4:-4839749 | MS.gene22784:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTATAATAATATCATC+AGG | + | chr7.4:4840052-4840071 | None:intergenic | 10.0% |
| !! | AAAAACAAACTCAATTAAAT+TGG | + | chr7.4:4840237-4840256 | None:intergenic | 15.0% |
| !! | TTTAAGAATATGTAACAAAA+TGG | - | chr7.4:4839964-4839983 | MS.gene22784:intron | 15.0% |
| !!! | AAATTCTAGATATTTACTTT+TGG | - | chr7.4:4839799-4839818 | MS.gene22784:CDS | 15.0% |
| !!! | TTAATTGAGTTTGTTTTTTA+AGG | - | chr7.4:4840239-4840258 | MS.gene22784:intron | 15.0% |
| !!! | TTTCTTCTATTTTATAATGT+AGG | - | chr7.4:4840700-4840719 | MS.gene22784:intron | 15.0% |
| !! | AAACTAAAAACTCTTAAAAC+CGG | + | chr7.4:4840334-4840353 | None:intergenic | 20.0% |
| !! | TAAGAAATAAACCATTGAAA+AGG | + | chr7.4:4840680-4840699 | None:intergenic | 20.0% |
| !! | TAAGATTACAAATGAAATGA+AGG | - | chr7.4:4841111-4841130 | MS.gene22784:intron | 20.0% |
| !!! | AAGAAATCATGGATTATATA+AGG | + | chr7.4:4840450-4840469 | None:intergenic | 20.0% |
| !!! | TATGACCTTTTTCTTAATTT+TGG | - | chr7.4:4840912-4840931 | MS.gene22784:CDS | 20.0% |
| !!! | TTTTAGCATTATCAAAAAAG+TGG | - | chr7.4:4839763-4839782 | MS.gene22784:CDS | 20.0% |
| !!! | TTTTTACTTTACCTTTTCAA+TGG | - | chr7.4:4840666-4840685 | MS.gene22784:intron | 20.0% |
| ! | AAATCTACTTTAGTTGTTAC+AGG | - | chr7.4:4840373-4840392 | MS.gene22784:intron | 25.0% |
| ! | AAATTGCAAGTCACTAAAAA+CGG | - | chr7.4:4839862-4839881 | MS.gene22784:intron | 25.0% |
| ! | AACTAAAAACTCTTAAAACC+GGG | + | chr7.4:4840333-4840352 | None:intergenic | 25.0% |
| ! | AGAAATACAACATGAAACTA+AGG | - | chr7.4:4839655-4839674 | MS.gene22784:intron | 25.0% |
| ! | ATAGGTAAAAATACTCCATA+AGG | + | chr7.4:4840202-4840221 | None:intergenic | 25.0% |
| ! | GAAATACAACATGAAACTAA+GGG | - | chr7.4:4839656-4839675 | MS.gene22784:intron | 25.0% |
| ! | GCATTATTCTTAATTTCTTC+TGG | - | chr7.4:4840974-4840993 | MS.gene22784:CDS | 25.0% |
| ! | GTGTATAAGTAAAGAAATCA+TGG | + | chr7.4:4840461-4840480 | None:intergenic | 25.0% |
| ! | TTCAAATTTATCAGCAATGA+CGG | + | chr7.4:4840940-4840959 | None:intergenic | 25.0% |
| !! | AAATCATGGATTATATAAGG+AGG | + | chr7.4:4840447-4840466 | None:intergenic | 25.0% |
| !! | AATATGATTAGTGTTTTCAG+TGG | + | chr7.4:4840483-4840502 | None:intergenic | 25.0% |
| !! | ACAACTAAAGTAGATTTTGA+TGG | + | chr7.4:4840370-4840389 | None:intergenic | 25.0% |
| !! | TTTGATTTACTTGACTTGAT+GGG | - | chr7.4:4839539-4839558 | MS.gene22784:CDS | 25.0% |
| !!! | AAATGAAATGAAGGCATTTA+AGG | - | chr7.4:4841120-4841139 | MS.gene22784:intron | 25.0% |
| !!! | AGTATTTTTACCTATAGGAT+TGG | - | chr7.4:4840207-4840226 | MS.gene22784:intron | 25.0% |
| !!! | TATGGAGTATTTTTACCTAT+AGG | - | chr7.4:4840202-4840221 | MS.gene22784:intron | 25.0% |
| CGGTACCAAAATTAAGAAAA+AGG | + | chr7.4:4840920-4840939 | None:intergenic | 30.0% | |
| GACAGAATTGAATATGAAAC+AGG | + | chr7.4:4840551-4840570 | None:intergenic | 30.0% | |
| TAAAAATACTCCATAAGGAC+AGG | + | chr7.4:4840197-4840216 | None:intergenic | 30.0% | |
| TCACAACTGAAGAGAATATT+CGG | + | chr7.4:4840528-4840547 | None:intergenic | 30.0% | |
| TTCATACTTACCAATTGTGA+GGG | - | chr7.4:4841066-4841085 | MS.gene22784:intron | 30.0% | |
| ! | CTTTGATTTACTTGACTTGA+TGG | - | chr7.4:4839538-4839557 | MS.gene22784:CDS | 30.0% |
| ! | TATTTTATAATGTAGGCTGC+TGG | - | chr7.4:4840707-4840726 | MS.gene22784:intron | 30.0% |
| !!! | AGTTTGTTTTTTAAGGCCTA+TGG | - | chr7.4:4840246-4840265 | MS.gene22784:intron | 30.0% |
| AACCCTGACAATCAAGTTAT+AGG | - | chr7.4:4840296-4840315 | MS.gene22784:intron | 35.0% | |
| AGACCTATAACTTGATTGTC+AGG | + | chr7.4:4840302-4840321 | None:intergenic | 35.0% | |
| ATCTTAACAAGCTCTACAGA+TGG | + | chr7.4:4841097-4841116 | None:intergenic | 35.0% | |
| CAAGCTCTATGTGAAATTAC+AGG | - | chr7.4:4840019-4840038 | MS.gene22784:intron | 35.0% | |
| CAGCCTGGAAATAAAAAACA+GGG | + | chr7.4:4841000-4841019 | None:intergenic | 35.0% | |
| GACCTATAACTTGATTGTCA+GGG | + | chr7.4:4840301-4840320 | None:intergenic | 35.0% | |
| GTTCATACTTACCAATTGTG+AGG | - | chr7.4:4841065-4841084 | MS.gene22784:intron | 35.0% | |
| TACTAGATGCACTCAAACTA+AGG | + | chr7.4:4840609-4840628 | None:intergenic | 35.0% | |
| TCGACAGAAATACCAATAGT+TGG | + | chr7.4:4840752-4840771 | None:intergenic | 35.0% | |
| ! | AAAAAGCTTGCTCCAACTAT+TGG | - | chr7.4:4840737-4840756 | MS.gene22784:intron | 35.0% |
| ! | AATAGTTGGAGCAAGCTTTT+TGG | + | chr7.4:4840738-4840757 | None:intergenic | 35.0% |
| ! | ATAGTTGGAGCAAGCTTTTT+GGG | + | chr7.4:4840737-4840756 | None:intergenic | 35.0% |
| AAAAACTCTTAAAACCGGGC+AGG | + | chr7.4:4840329-4840348 | None:intergenic | 40.0% | |
| AAAACTCTTAAAACCGGGCA+GGG | + | chr7.4:4840328-4840347 | None:intergenic | 40.0% | |
| AATACTCCATAAGGACAGGT+TGG | + | chr7.4:4840193-4840212 | None:intergenic | 40.0% | |
| ACTTGACAACAGGTTTGTAC+TGG | + | chr7.4:4840167-4840186 | None:intergenic | 40.0% | |
| AGTACAAACCTGTTGTCAAG+TGG | - | chr7.4:4840166-4840185 | MS.gene22784:intron | 40.0% | |
| CCAGCCTGGAAATAAAAAAC+AGG | + | chr7.4:4841001-4841020 | None:intergenic | 40.0% | |
| CGAACAAACAAACGCCATTT+GGG | - | chr7.4:4841166-4841185 | MS.gene22784:CDS | 40.0% | |
| GCAAACGCAATTCCATGTAT+TGG | + | chr7.4:4840127-4840146 | None:intergenic | 40.0% | |
| GGCAAAACTATGTCAAGACA+TGG | - | chr7.4:4839404-4839423 | MS.gene22784:CDS | 40.0% | |
| GGTCAAGGTAATGCAAATTG+CGG | - | chr7.4:4840874-4840893 | MS.gene22784:intron | 40.0% | |
| GTTTACCTTCAACTCCTCAA+GGG | + | chr7.4:4839697-4839716 | None:intergenic | 40.0% | |
| TACAACATGAAACTAAGGGC+TGG | - | chr7.4:4839660-4839679 | MS.gene22784:intron | 40.0% | |
| TGAGTCTGTCCATGAACAAT+AGG | + | chr7.4:4839636-4839655 | None:intergenic | 40.0% | |
| TGATTGTCAGGGTTCCTAAA+CGG | + | chr7.4:4840290-4840309 | None:intergenic | 40.0% | |
| TGTTTACCTTCAACTCCTCA+AGG | + | chr7.4:4839698-4839717 | None:intergenic | 40.0% | |
| TTGCAATCCACACCAATACA+TGG | - | chr7.4:4840112-4840131 | MS.gene22784:intron | 40.0% | |
| ! | AATTGGCTAGCCAATCCTAT+AGG | + | chr7.4:4840220-4840239 | None:intergenic | 40.0% |
| ! | ATGAAACTAAGGGCTGGTAA+AGG | - | chr7.4:4839666-4839685 | MS.gene22784:intron | 40.0% |
| ! | ATTTTCAGCTCGTCAGAAGA+AGG | - | chr7.4:4839569-4839588 | MS.gene22784:intron | 40.0% |
| ! | TGTATTGGTGTGGATTGCAA+AGG | + | chr7.4:4840112-4840131 | None:intergenic | 40.0% |
| !! | CATAGTTTTGCCAATGCTTG+CGG | + | chr7.4:4839396-4839415 | None:intergenic | 40.0% |
| !! | GTAGATTTTGATGGTCATGC+TGG | + | chr7.4:4840361-4840380 | None:intergenic | 40.0% |
| !!! | CCTGTTTTTTATTTCCAGGC+TGG | - | chr7.4:4840998-4841017 | MS.gene22784:intron | 40.0% |
| !!! | TGGCCCTGTTTTTTATTTCC+AGG | - | chr7.4:4840994-4841013 | MS.gene22784:intron | 40.0% |
| !!! | TGTTTTTTAAGGCCTATGGC+TGG | - | chr7.4:4840250-4840269 | MS.gene22784:intron | 40.0% |
| AGGCCTTGGGAAAATCTTCA+CGG | + | chr7.4:4839595-4839614 | None:intergenic | 45.0% | |
| ATGAACACTTCCGCAAGCAT+TGG | - | chr7.4:4839383-4839402 | MS.gene22784:CDS | 45.0% | |
| CACCAATCTCCAATGTACGT+AGG | - | chr7.4:4840417-4840436 | MS.gene22784:intron | 45.0% | |
| CACCTACGTACATTGGAGAT+TGG | + | chr7.4:4840422-4840441 | None:intergenic | 45.0% | |
| CATGGTTTAACCAACCTGCA+AGG | - | chr7.4:4839422-4839441 | MS.gene22784:CDS | 45.0% | |
| CCTAAACGGCATACGAGTTA+AGG | + | chr7.4:4840276-4840295 | None:intergenic | 45.0% | |
| GAAGACATACAAGGCCAAGT+TGG | - | chr7.4:4840826-4840845 | MS.gene22784:intron | 45.0% | |
| GCAAATGCTACACAGGTTCA+AGG | - | chr7.4:4841043-4841062 | MS.gene22784:intron | 45.0% | |
| GCGAACAAACAAACGCCATT+TGG | - | chr7.4:4841165-4841184 | MS.gene22784:CDS | 45.0% | |
| GGAACTAGCAAATGCTACAC+AGG | - | chr7.4:4841036-4841055 | MS.gene22784:intron | 45.0% | |
| ! | ATTTGCTAGTTCCTCAGGAG+TGG | + | chr7.4:4841029-4841048 | None:intergenic | 45.0% |
| ! | CCTTAACTCGTATGCCGTTT+AGG | - | chr7.4:4840273-4840292 | MS.gene22784:intron | 45.0% |
| ! | CGCAATTCCATGTATTGGTG+TGG | + | chr7.4:4840122-4840141 | None:intergenic | 45.0% |
| ! | GTAGCATTTGCTAGTTCCTC+AGG | + | chr7.4:4841034-4841053 | None:intergenic | 45.0% |
| !! | GCTTGCGGAAGTGTTCATTA+GGG | + | chr7.4:4839381-4839400 | None:intergenic | 45.0% |
| !! | TGCTTGCGGAAGTGTTCATT+AGG | + | chr7.4:4839382-4839401 | None:intergenic | 45.0% |
| AGGAAGACGAGAAGACGCTT+AGG | - | chr7.4:4839442-4839461 | MS.gene22784:CDS | 50.0% | |
| AGTGGACCAACCTGTCCTTA+TGG | - | chr7.4:4840184-4840203 | MS.gene22784:intron | 50.0% | |
| ATTTGGGTGCCAGACTGAAG+AGG | - | chr7.4:4841182-4841201 | MS.gene22784:CDS | 50.0% | |
| CCACTCAGGCCTATTGTTCA+TGG | - | chr7.4:4839624-4839643 | MS.gene22784:intron | 50.0% | |
| CCATGAACAATAGGCCTGAG+TGG | + | chr7.4:4839627-4839646 | None:intergenic | 50.0% | |
| CTTCTCCCTTGAGGAGTTGA+AGG | - | chr7.4:4839689-4839708 | MS.gene22784:intron | 50.0% | |
| CTTGCAGACCTTCCAAGGAT+CGG | + | chr7.4:4840790-4840809 | None:intergenic | 50.0% | |
| CTTGTCTTCCTTCTCTGCCT+CGG | + | chr7.4:4841212-4841231 | None:intergenic | 50.0% | |
| GATGGCTTCTCCCTCACAAT+TGG | + | chr7.4:4841079-4841098 | None:intergenic | 50.0% | |
| GCAGAGGCTGAAGACATACA+AGG | - | chr7.4:4840817-4840836 | MS.gene22784:intron | 50.0% | |
| GGAGGTTCACCTACGTACAT+TGG | + | chr7.4:4840429-4840448 | None:intergenic | 50.0% | |
| TACGAGTTAAGGCCAGCCAT+AGG | + | chr7.4:4840265-4840284 | None:intergenic | 50.0% | |
| TCTTCAGTCTGGCACCCAAA+TGG | + | chr7.4:4841183-4841202 | None:intergenic | 50.0% | |
| TCTTGGGAAGACGACCAACT+TGG | + | chr7.4:4840843-4840862 | None:intergenic | 50.0% | |
| TGGTAAAGGCTTCTCCCTTG+AGG | - | chr7.4:4839680-4839699 | MS.gene22784:intron | 50.0% | |
| TTATAGGTCTATGCCCTGCC+CGG | - | chr7.4:4840312-4840331 | MS.gene22784:intron | 50.0% | |
| TTCTCGTCTTCCTTGCAGGT+TGG | + | chr7.4:4839435-4839454 | None:intergenic | 50.0% | |
| TTTGGGTGCCAGACTGAAGA+GGG | - | chr7.4:4841183-4841202 | MS.gene22784:CDS | 50.0% | |
| ! | AGGCCGTGAAGATTTTCCCA+AGG | - | chr7.4:4839589-4839608 | MS.gene22784:intron | 50.0% |
| ! | AGGTTGGTCCACTTGACAAC+AGG | + | chr7.4:4840177-4840196 | None:intergenic | 50.0% |
| ! | ATTTTCCCAAGGCCTACAGC+TGG | - | chr7.4:4839600-4839619 | MS.gene22784:intron | 50.0% |
| ! | CTTCCAAGGATCGGTTCTTG+CGG | + | chr7.4:4840781-4840800 | None:intergenic | 50.0% |
| AAGACGTGCACGCAAGGTCA+AGG | - | chr7.4:4840859-4840878 | MS.gene22784:intron | 55.0% | |
| CGCAAGAACCGATCCTTGGA+AGG | - | chr7.4:4840779-4840798 | MS.gene22784:intron | 55.0% | |
| CGTCTTCTCGTCTTCCTTGC+AGG | + | chr7.4:4839439-4839458 | None:intergenic | 55.0% | |
| TGACCTTGCGTGCACGTCTT+GGG | + | chr7.4:4840859-4840878 | None:intergenic | 55.0% | |
| TGTCTTCAGCCTCTGCACGT+TGG | + | chr7.4:4840813-4840832 | None:intergenic | 55.0% | |
| TTGACCTTGCGTGCACGTCT+TGG | + | chr7.4:4840860-4840879 | None:intergenic | 55.0% | |
| !! | GTTGGCTTGCAGACCTTCCA+AGG | + | chr7.4:4840795-4840814 | None:intergenic | 55.0% |
| AGTGGTCCAGCTGTAGGCCT+TGG | + | chr7.4:4839609-4839628 | None:intergenic | 60.0% | |
| CAGGAGTGGAATCACCAGCC+TGG | + | chr7.4:4841015-4841034 | None:intergenic | 60.0% | |
| CTTCCCAAGACGTGCACGCA+AGG | - | chr7.4:4840853-4840872 | MS.gene22784:intron | 60.0% | |
| GGCTGGTGATTCCACTCCTG+AGG | - | chr7.4:4841015-4841034 | MS.gene22784:intron | 60.0% | |
| GTCTGCAAGCCAACGTGCAG+AGG | - | chr7.4:4840801-4840820 | MS.gene22784:intron | 60.0% | |
| GTGGTCCAGCTGTAGGCCTT+GGG | + | chr7.4:4839608-4839627 | None:intergenic | 60.0% | |
| TCGCCGCAAGAACCGATCCT+TGG | - | chr7.4:4840775-4840794 | MS.gene22784:intron | 60.0% | |
| CAGACTGAAGAGGGCTGCCG+AGG | - | chr7.4:4841192-4841211 | MS.gene22784:CDS | 65.0% | |
| CTCGGCAGCCCTCTTCAGTC+TGG | + | chr7.4:4841194-4841213 | None:intergenic | 65.0% | |
| GGCCTACAGCTGGACCACTC+AGG | - | chr7.4:4839610-4839629 | MS.gene22784:intron | 65.0% | |
| GGCCTGAGTGGTCCAGCTGT+AGG | + | chr7.4:4839615-4839634 | None:intergenic | 65.0% | |
| GAGGGCTGCCGAGGCAGAGA+AGG | - | chr7.4:4841201-4841220 | MS.gene22784:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 4839355 | 4841233 | 4839355 | ID=MS.gene22784 |
| chr7.4 | mRNA | 4839355 | 4841233 | 4839355 | ID=MS.gene22784.t1;Parent=MS.gene22784 |
| chr7.4 | exon | 4841125 | 4841233 | 4841125 | ID=MS.gene22784.t1.exon1;Parent=MS.gene22784.t1 |
| chr7.4 | CDS | 4841125 | 4841233 | 4841125 | ID=cds.MS.gene22784.t1;Parent=MS.gene22784.t1 |
| chr7.4 | exon | 4840878 | 4841011 | 4840878 | ID=MS.gene22784.t1.exon2;Parent=MS.gene22784.t1 |
| chr7.4 | CDS | 4840878 | 4841011 | 4840878 | ID=cds.MS.gene22784.t1;Parent=MS.gene22784.t1 |
| chr7.4 | exon | 4839708 | 4839866 | 4839708 | ID=MS.gene22784.t1.exon3;Parent=MS.gene22784.t1 |
| chr7.4 | CDS | 4839708 | 4839866 | 4839708 | ID=cds.MS.gene22784.t1;Parent=MS.gene22784.t1 |
| chr7.4 | exon | 4839355 | 4839572 | 4839355 | ID=MS.gene22784.t1.exon4;Parent=MS.gene22784.t1 |
| chr7.4 | CDS | 4839355 | 4839572 | 4839355 | ID=cds.MS.gene22784.t1;Parent=MS.gene22784.t1 |
| Gene Sequence |
| Protein sequence |
