Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006331.t1 | XP_003592304.1 | 93.1 | 291 | 20 | 0 | 1 | 291 | 1 | 291 | 4.70E-156 | 560.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006331.t1 | Q9LEX0 | 58.5 | 282 | 113 | 2 | 1 | 281 | 1 | 279 | 3.5e-99 | 362.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006331.t1 | G7IAQ2 | 93.1 | 291 | 20 | 0 | 1 | 291 | 1 | 291 | 3.4e-156 | 560.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006331 | MS.gene20125 | PPI |
| MS.gene006331 | MS.gene015546 | PPI |
| MS.gene015544 | MS.gene006331 | PPI |
| MS.gene006331 | MS.gene033388 | PPI |
| MS.gene006331 | MS.gene72988 | PPI |
| MS.gene006331 | MS.gene072814 | PPI |
| MS.gene22617 | MS.gene006331 | PPI |
| MS.gene006331 | MS.gene011426 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006331.t1 | MTR_1g101390 | 94.845 | 291 | 15 | 0 | 1 | 291 | 1 | 291 | 0.0 | 547 |
| MS.gene006331.t1 | MTR_0113s0040 | 72.792 | 283 | 77 | 0 | 9 | 291 | 3 | 285 | 2.73e-157 | 440 |
| MS.gene006331.t1 | MTR_0002s0020 | 58.803 | 284 | 106 | 3 | 1 | 279 | 1 | 278 | 2.43e-122 | 352 |
| MS.gene006331.t1 | MTR_4g102770 | 61.154 | 260 | 100 | 1 | 28 | 286 | 19 | 278 | 2.31e-118 | 341 |
| MS.gene006331.t1 | MTR_5g010800 | 55.762 | 269 | 115 | 3 | 19 | 286 | 10 | 275 | 7.99e-110 | 320 |
| MS.gene006331.t1 | MTR_7g103380 | 52.013 | 298 | 123 | 2 | 1 | 287 | 1 | 289 | 3.95e-109 | 318 |
| MS.gene006331.t1 | MTR_7g112560 | 22.711 | 273 | 179 | 6 | 31 | 286 | 4 | 261 | 8.24e-25 | 100 |
| MS.gene006331.t1 | MTR_7g112550 | 25.000 | 284 | 185 | 6 | 23 | 281 | 2 | 282 | 1.12e-23 | 97.8 |
| MS.gene006331.t1 | MTR_1g079260 | 28.755 | 233 | 150 | 4 | 26 | 257 | 2 | 219 | 1.79e-23 | 97.1 |
| MS.gene006331.t1 | MTR_1g100597 | 28.421 | 285 | 164 | 8 | 26 | 283 | 2 | 273 | 2.81e-23 | 96.7 |
| MS.gene006331.t1 | MTR_1g079140 | 37.762 | 143 | 86 | 2 | 30 | 169 | 15 | 157 | 1.68e-22 | 95.1 |
| MS.gene006331.t1 | MTR_4g023570 | 23.735 | 257 | 174 | 6 | 31 | 285 | 4 | 240 | 2.20e-22 | 93.6 |
| MS.gene006331.t1 | MTR_1g079460 | 36.620 | 142 | 88 | 2 | 30 | 169 | 6 | 147 | 5.35e-22 | 93.2 |
| MS.gene006331.t1 | MTR_1g079180 | 34.932 | 146 | 93 | 2 | 26 | 169 | 2 | 147 | 3.67e-21 | 90.9 |
| MS.gene006331.t1 | MTR_1g083580 | 34.266 | 143 | 92 | 2 | 31 | 171 | 11 | 153 | 6.26e-20 | 87.8 |
| MS.gene006331.t1 | MTR_1g100613 | 37.984 | 129 | 77 | 2 | 45 | 172 | 6 | 132 | 4.86e-19 | 84.3 |
| MS.gene006331.t1 | MTR_1g079380 | 34.667 | 150 | 95 | 2 | 26 | 174 | 2 | 149 | 3.58e-18 | 83.2 |
| MS.gene006331.t1 | MTR_1g079370 | 32.530 | 166 | 105 | 4 | 26 | 186 | 2 | 165 | 4.49e-18 | 82.4 |
| MS.gene006331.t1 | MTR_3g452600 | 28.674 | 279 | 152 | 9 | 28 | 281 | 10 | 266 | 5.14e-18 | 82.0 |
| MS.gene006331.t1 | MTR_1g079230 | 27.426 | 237 | 151 | 5 | 26 | 255 | 2 | 224 | 4.29e-17 | 79.7 |
| MS.gene006331.t1 | MTR_1g079200 | 32.877 | 146 | 94 | 3 | 30 | 174 | 6 | 148 | 8.21e-17 | 78.6 |
| MS.gene006331.t1 | MTR_1g079410 | 32.639 | 144 | 94 | 2 | 31 | 171 | 11 | 154 | 6.53e-15 | 73.6 |
| MS.gene006331.t1 | MTR_3g450990 | 27.018 | 285 | 165 | 10 | 28 | 281 | 10 | 282 | 3.17e-14 | 71.6 |
| MS.gene006331.t1 | MTR_1g079850 | 31.034 | 145 | 97 | 2 | 30 | 171 | 6 | 150 | 5.39e-14 | 71.2 |
| MS.gene006331.t1 | MTR_1g079400 | 27.461 | 193 | 134 | 4 | 18 | 205 | 2 | 193 | 2.89e-13 | 68.9 |
| MS.gene006331.t1 | MTR_1g079250 | 31.944 | 144 | 96 | 2 | 30 | 171 | 6 | 149 | 6.49e-13 | 68.2 |
| MS.gene006331.t1 | MTR_2g079100 | 25.957 | 235 | 148 | 5 | 21 | 251 | 2 | 214 | 1.45e-12 | 66.6 |
| MS.gene006331.t1 | MTR_3g006850 | 30.000 | 160 | 92 | 5 | 26 | 169 | 15 | 170 | 4.66e-11 | 62.8 |
| MS.gene006331.t1 | MTR_1g079350 | 32.886 | 149 | 86 | 6 | 30 | 169 | 6 | 149 | 5.81e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006331.t1 | AT3G61060 | 59.574 | 282 | 110 | 3 | 1 | 281 | 1 | 279 | 1.85e-126 | 362 |
| MS.gene006331.t1 | AT3G61060 | 59.364 | 283 | 110 | 4 | 1 | 281 | 1 | 280 | 1.13e-124 | 357 |
| MS.gene006331.t1 | AT5G52120 | 55.019 | 269 | 115 | 1 | 27 | 289 | 20 | 288 | 1.75e-110 | 322 |
| MS.gene006331.t1 | AT1G12710 | 56.296 | 270 | 112 | 3 | 25 | 291 | 25 | 291 | 1.16e-104 | 306 |
| MS.gene006331.t1 | AT1G63090 | 54.104 | 268 | 121 | 2 | 25 | 291 | 23 | 289 | 1.57e-100 | 296 |
| MS.gene006331.t1 | AT3G53000 | 48.973 | 292 | 130 | 3 | 1 | 281 | 1 | 284 | 2.43e-97 | 288 |
| MS.gene006331.t1 | AT1G12710 | 48.718 | 312 | 112 | 4 | 25 | 291 | 25 | 333 | 1.25e-95 | 285 |
| MS.gene006331.t1 | AT1G09155 | 27.586 | 203 | 131 | 3 | 31 | 231 | 3 | 191 | 2.53e-21 | 91.7 |
| MS.gene006331.t1 | AT2G02360 | 37.681 | 138 | 80 | 2 | 33 | 169 | 19 | 151 | 2.69e-21 | 91.3 |
| MS.gene006331.t1 | AT2G02240 | 28.777 | 278 | 148 | 8 | 31 | 282 | 64 | 317 | 3.06e-19 | 86.3 |
| MS.gene006331.t1 | AT2G02230 | 32.278 | 158 | 99 | 3 | 15 | 171 | 21 | 171 | 4.91e-19 | 86.3 |
| MS.gene006331.t1 | AT5G24560 | 27.160 | 162 | 106 | 3 | 30 | 184 | 5 | 161 | 4.10e-18 | 80.9 |
| MS.gene006331.t1 | AT1G80110 | 25.746 | 268 | 174 | 7 | 28 | 282 | 1 | 256 | 2.68e-17 | 80.1 |
| MS.gene006331.t1 | AT2G02340 | 30.994 | 171 | 102 | 4 | 19 | 181 | 27 | 189 | 3.72e-17 | 80.5 |
| MS.gene006331.t1 | AT2G02310 | 35.878 | 131 | 78 | 2 | 30 | 159 | 47 | 172 | 1.47e-16 | 78.6 |
| MS.gene006331.t1 | AT2G02350 | 30.769 | 156 | 101 | 3 | 13 | 166 | 9 | 159 | 1.68e-16 | 78.6 |
| MS.gene006331.t1 | AT2G02250 | 29.714 | 175 | 113 | 4 | 2 | 171 | 18 | 187 | 4.66e-16 | 77.4 |
| MS.gene006331.t1 | AT1G56250 | 24.468 | 282 | 177 | 8 | 31 | 281 | 4 | 280 | 5.59e-15 | 73.9 |
| MS.gene006331.t1 | AT1G56240 | 22.603 | 292 | 170 | 6 | 31 | 281 | 4 | 280 | 5.93e-14 | 70.9 |
| MS.gene006331.t1 | AT2G02300 | 29.801 | 151 | 101 | 2 | 22 | 171 | 28 | 174 | 3.37e-11 | 63.2 |
Find 56 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTGCTTATAAATTTCT+TGG | 0.233636 | 1.1:+72959872 | MS.gene006331:CDS |
| TCCACCTGATATATGCAAAT+TGG | 0.341137 | 1.1:+72959772 | MS.gene006331:CDS |
| CATAACTTTCAGACTCCAAT+TGG | 0.346494 | 1.1:+72962283 | MS.gene006331:CDS |
| TTACCATGTTGGAGATTTCA+TGG | 0.347440 | 1.1:+72962457 | MS.gene006331:CDS |
| ATGTGGTGGGTTGAAGTAAT+AGG | 0.354758 | 1.1:+72962224 | MS.gene006331:CDS |
| TCAAAGTCTTTGAAGATAAC+AGG | 0.357934 | 1.1:+72960163 | MS.gene006331:CDS |
| ATTTGCATGGGCCAGGGCAA+TGG | 0.362661 | 1.1:+72962429 | MS.gene006331:CDS |
| TGGATCAAGATGCATGAGTA+TGG | 0.388988 | 1.1:-72959753 | None:intergenic |
| CTAGCCAATTTGCATATATC+AGG | 0.392374 | 1.1:-72959776 | None:intergenic |
| TTTGCATGGGCCAGGGCAAT+GGG | 0.397867 | 1.1:+72962430 | MS.gene006331:CDS |
| GAGTGTTATTTGCATGGGCC+AGG | 0.404946 | 1.1:+72962422 | MS.gene006331:CDS |
| GTACCACCGTCAAAGCGATT+AGG | 0.408204 | 1.1:-72959950 | None:intergenic |
| ATCTATGCAGAGGCCGCCTT+TGG | 0.412675 | 1.1:-72962543 | None:intergenic |
| GAATAGATGATAGAAGATAT+TGG | 0.414837 | 1.1:+72960185 | MS.gene006331:CDS |
| GACATCTTTCTTAGTCATAG+TGG | 0.416582 | 1.1:-72959909 | None:intergenic |
| ATCTCAGAGTGTTATTTGCA+TGG | 0.460843 | 1.1:+72962416 | MS.gene006331:CDS |
| AATTCATCATCATCAAGAAC+GGG | 0.479897 | 1.1:+72959698 | MS.gene006331:CDS |
| AGTCTTTCTCTAAACACAGT+TGG | 0.483039 | 1.1:-72962581 | None:intergenic |
| ACGATGATCAAGTTCATGGC+TGG | 0.486450 | 1.1:+72962342 | MS.gene006331:CDS |
| GGGAAAGTCATCAAAACGAT+TGG | 0.489012 | 1.1:+72962304 | MS.gene006331:CDS |
| CTGATATATGCAAATTGGCT+AGG | 0.492079 | 1.1:+72959777 | MS.gene006331:CDS |
| TCTCACCTGGATTCCTCAGT+TGG | 0.494511 | 1.1:-72960217 | None:intergenic |
| ACATTCCAACTGAGGAATCC+AGG | 0.495554 | 1.1:+72960212 | MS.gene006331:CDS |
| GTAGAGAGTTGGAATCTAAC+GGG | 0.506240 | 1.1:-72962374 | None:intergenic |
| TGGTAATAAGCCCATTGCCC+TGG | 0.511634 | 1.1:-72962440 | None:intergenic |
| TGCAACGATGATCAAGTTCA+TGG | 0.517273 | 1.1:+72962338 | MS.gene006331:CDS |
| ATAACTTTCAGACTCCAATT+GGG | 0.520543 | 1.1:+72962284 | MS.gene006331:CDS |
| GGAAAGTCATCAAAACGATT+GGG | 0.522230 | 1.1:+72962305 | MS.gene006331:CDS |
| TATTCACAGGTTCAAGAATG+TGG | 0.529110 | 1.1:+72962187 | MS.gene006331:intron |
| CAATGGGCTTATTACCATGT+TGG | 0.535550 | 1.1:+72962446 | MS.gene006331:CDS |
| TAATTCATCATCATCAAGAA+CGG | 0.545437 | 1.1:+72959697 | MS.gene006331:CDS |
| CGATGATCAAGTTCATGGCT+GGG | 0.545852 | 1.1:+72962343 | MS.gene006331:CDS |
| TGTCAACCTAATCGCTTTGA+CGG | 0.551447 | 1.1:+72959944 | MS.gene006331:CDS |
| GCAAGAAACTTGTAGCATGA+TGG | 0.553327 | 1.1:-72959857 | None:intergenic |
| TCTCAGAGTGTTATTTGCAT+GGG | 0.559048 | 1.1:+72962417 | MS.gene006331:CDS |
| GCCAATTTGCATATATCAGG+TGG | 0.562917 | 1.1:-72959773 | None:intergenic |
| GACCGTCCGATGTAGAGAGT+TGG | 0.563295 | 1.1:-72962385 | None:intergenic |
| TGTAGAGAGTTGGAATCTAA+CGG | 0.566747 | 1.1:-72962375 | None:intergenic |
| CATATCTTCAACAAATGTGG+TGG | 0.568286 | 1.1:+72962210 | MS.gene006331:CDS |
| CTAGAGTTTGTATTCCCTGT+GGG | 0.569667 | 1.1:+72962251 | MS.gene006331:CDS |
| TGATATATGCAAATTGGCTA+GGG | 0.577318 | 1.1:+72959778 | MS.gene006331:CDS |
| AGTGTTATTTGCATGGGCCA+GGG | 0.596672 | 1.1:+72962423 | MS.gene006331:CDS |
| GTTATGCTGTAACTTCCCAC+AGG | 0.602467 | 1.1:-72962266 | None:intergenic |
| ATTGATTGTACTCATACCAA+AGG | 0.615939 | 1.1:+72962527 | MS.gene006331:CDS |
| TTCCAACTCTCTACATCGGA+CGG | 0.616192 | 1.1:+72962383 | MS.gene006331:CDS |
| CAACCTAATCGCTTTGACGG+TGG | 0.616958 | 1.1:+72959947 | MS.gene006331:CDS |
| TTGGATTTACATTCCAACTG+AGG | 0.622680 | 1.1:+72960204 | MS.gene006331:CDS |
| CAACCATGAAATCTCCAACA+TGG | 0.639418 | 1.1:-72962460 | None:intergenic |
| AAGAAGCTCTATGAAAAGCA+CGG | 0.646856 | 1.1:-72959805 | None:intergenic |
| GCTAGAGTTTGTATTCCCTG+TGG | 0.659976 | 1.1:+72962250 | MS.gene006331:CDS |
| GATTGTACTCATACCAAAGG+CGG | 0.661351 | 1.1:+72962530 | MS.gene006331:CDS |
| TGGCATATCTTCAACAAATG+TGG | 0.668014 | 1.1:+72962207 | MS.gene006331:CDS |
| TGATTGCACTATCTATGCAG+AGG | 0.671933 | 1.1:-72962553 | None:intergenic |
| TAGATTCCAACTCTCTACAT+CGG | 0.677625 | 1.1:+72962379 | MS.gene006331:CDS |
| ATATCTTCAACAAATGTGGT+GGG | 0.687256 | 1.1:+72962211 | MS.gene006331:CDS |
| TTATGCTGTAACTTCCCACA+GGG | 0.694696 | 1.1:-72962265 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAACAAATATCTATTAAAA+TGG | + | chr1.1:72961619-72961638 | MS.gene006331:intron | 10.0% |
| !! | ACTATAGAAATGTATAAATA+TGG | + | chr1.1:72960245-72960264 | MS.gene006331:intron | 15.0% |
| !! | ATATGAAAATGTGTTTATAA+CGG | + | chr1.1:72960787-72960806 | MS.gene006331:intron | 15.0% |
| !! | TACAAATCAATTAAAATCAA+TGG | + | chr1.1:72961177-72961196 | MS.gene006331:intron | 15.0% |
| !! | TCTTATCAAAAATAAACATT+AGG | + | chr1.1:72962021-72962040 | MS.gene006331:intron | 15.0% |
| !! | TGAAGAAAAAAAAAATCAAA+AGG | - | chr1.1:72960051-72960070 | None:intergenic | 15.0% |
| !! | TTAAATTTCTACACTAAATT+TGG | - | chr1.1:72960841-72960860 | None:intergenic | 15.0% |
| !!! | AAAGAAAACTTGATTTTTAT+GGG | - | chr1.1:72962500-72962519 | None:intergenic | 15.0% |
| !!! | ATACTTTTTAAGAATGAATT+AGG | + | chr1.1:72960503-72960522 | MS.gene006331:intron | 15.0% |
| !!! | TATAGAATAAAGTTTTCATT+AGG | - | chr1.1:72960966-72960985 | None:intergenic | 15.0% |
| !!! | TTTTTATTTTTTGTATTCAC+AGG | + | chr1.1:72962174-72962193 | MS.gene006331:intron | 15.0% |
| !! | AAACAAAGATCAAATATAAG+AGG | - | chr1.1:72960280-72960299 | None:intergenic | 20.0% |
| !! | AACTAATTGAAAATGCAAAA+TGG | + | chr1.1:72962130-72962149 | MS.gene006331:intron | 20.0% |
| !! | AAGAAAAGCAGTAATATTAA+CGG | - | chr1.1:72961867-72961886 | None:intergenic | 20.0% |
| !! | AGATGAAAGTTTAATATGTT+CGG | + | chr1.1:72961042-72961061 | MS.gene006331:intron | 20.0% |
| !! | ATTAACCCTAAAAATTTAGA+AGG | + | chr1.1:72961315-72961334 | MS.gene006331:intron | 20.0% |
| !! | TAAAATAGAGTAACTTACTT+TGG | - | chr1.1:72959975-72959994 | None:intergenic | 20.0% |
| !! | TATCCTGTAAAAAAAAATAG+TGG | + | chr1.1:72961963-72961982 | MS.gene006331:intron | 20.0% |
| !! | TTGGTCAAATAATAAATAGT+AGG | + | chr1.1:72961073-72961092 | MS.gene006331:intron | 20.0% |
| !! | TTTCTTGCTTATAAATTTCT+TGG | + | chr1.1:72959872-72959891 | MS.gene006331:CDS | 20.0% |
| !!! | ATCTTTTCAAAGTCTTATAT+AGG | + | chr1.1:72961290-72961309 | MS.gene006331:intron | 20.0% |
| !!! | CAAAGAAAACTTGATTTTTA+TGG | - | chr1.1:72962501-72962520 | None:intergenic | 20.0% |
| !!! | CATAAAAATCAAGTTTTCTT+TGG | + | chr1.1:72962499-72962518 | MS.gene006331:CDS | 20.0% |
| !!! | CATTTAGTTTATTTTCATTG+AGG | + | chr1.1:72961244-72961263 | MS.gene006331:intron | 20.0% |
| !!! | CCATTATTTTGAAAATATGT+AGG | - | chr1.1:72961139-72961158 | None:intergenic | 20.0% |
| !!! | CCTACATATTTTCAAAATAA+TGG | + | chr1.1:72961136-72961155 | MS.gene006331:intron | 20.0% |
| !!! | CTAAATGATATTTTAATCCA+TGG | - | chr1.1:72961231-72961250 | None:intergenic | 20.0% |
| !!! | GTTTCTTAATATTTTTCATG+TGG | + | chr1.1:72960876-72960895 | MS.gene006331:intron | 20.0% |
| !!! | TAGCATTTTATGGATAATTT+AGG | + | chr1.1:72961510-72961529 | MS.gene006331:intron | 20.0% |
| !!! | TTTAAGAAAAAGCAGTTTTT+GGG | + | chr1.1:72960998-72961017 | MS.gene006331:intron | 20.0% |
| !!! | TTTGCATTTTCAATTAGTTT+TGG | - | chr1.1:72962129-72962148 | None:intergenic | 20.0% |
| !!! | TTTTAAGAAAAAGCAGTTTT+TGG | + | chr1.1:72960997-72961016 | MS.gene006331:intron | 20.0% |
| ! | AAAATTTAGTCACCCTATAT+TGG | + | chr1.1:72960670-72960689 | MS.gene006331:intron | 25.0% |
| ! | AAATTTAGTCACCCTATATT+GGG | + | chr1.1:72960671-72960690 | MS.gene006331:intron | 25.0% |
| ! | ATCGCATATTATAATGAGAA+GGG | - | chr1.1:72961838-72961857 | None:intergenic | 25.0% |
| ! | GAATAGATGATAGAAGATAT+TGG | + | chr1.1:72960185-72960204 | MS.gene006331:CDS | 25.0% |
| ! | TAATTCATCATCATCAAGAA+CGG | + | chr1.1:72959697-72959716 | MS.gene006331:CDS | 25.0% |
| ! | TTAAAAGCCTATTTGCAAAT+TGG | + | chr1.1:72961467-72961486 | MS.gene006331:intron | 25.0% |
| ! | TTAGTATTAAGAAGTTTCTG+CGG | + | chr1.1:72962057-72962076 | MS.gene006331:intron | 25.0% |
| ! | TTGATGTGTGAATAATTTGA+TGG | - | chr1.1:72960577-72960596 | None:intergenic | 25.0% |
| !! | ACAGTTCCTTCTAAATTTTT+AGG | - | chr1.1:72961324-72961343 | None:intergenic | 25.0% |
| !! | ATGAAAATGACCTTTGTTTA+AGG | + | chr1.1:72961586-72961605 | MS.gene006331:intron | 25.0% |
| !! | ATTTTATGTAAACACAAAGC+AGG | - | chr1.1:72960398-72960417 | None:intergenic | 25.0% |
| !! | CAGTTCCTTCTAAATTTTTA+GGG | - | chr1.1:72961323-72961342 | None:intergenic | 25.0% |
| !! | TATGGTCAAATAGCATTTTA+TGG | + | chr1.1:72961500-72961519 | MS.gene006331:intron | 25.0% |
| !! | TGAAAATGACCTTTGTTTAA+GGG | + | chr1.1:72961587-72961606 | MS.gene006331:intron | 25.0% |
| !! | TGAATTATACGCATTTTACT+TGG | + | chr1.1:72961801-72961820 | MS.gene006331:intron | 25.0% |
| !! | TTTGACTAACTTTTTAATGC+AGG | - | chr1.1:72960445-72960464 | None:intergenic | 25.0% |
| !!! | CAAATTGGCTTATGTTTTTA+TGG | + | chr1.1:72961482-72961501 | MS.gene006331:intron | 25.0% |
| !!! | GTTAATATTACTGCTTTTCT+TGG | + | chr1.1:72961866-72961885 | MS.gene006331:intron | 25.0% |
| !!! | TCTTGATTTGTTTTTCTTTC+TGG | + | chr1.1:72960087-72960106 | MS.gene006331:intron | 25.0% |
| !!! | TGACCACTATTTTTTTTTAC+AGG | - | chr1.1:72961969-72961988 | None:intergenic | 25.0% |
| !!! | TTATACATGTTTAGTCTTGA+GGG | + | chr1.1:72960727-72960746 | MS.gene006331:intron | 25.0% |
| !!! | TTTGTTTTTCTTTCTGGTAT+AGG | + | chr1.1:72960093-72960112 | MS.gene006331:intron | 25.0% |
| AATTCATCATCATCAAGAAC+GGG | + | chr1.1:72959698-72959717 | MS.gene006331:CDS | 30.0% | |
| ACATAAGCCAATTTGCAAAT+AGG | - | chr1.1:72961477-72961496 | None:intergenic | 30.0% | |
| AGAATAATCTGAACAAACCA+TGG | + | chr1.1:72961211-72961230 | MS.gene006331:intron | 30.0% | |
| ATAACTTTCAGACTCCAATT+GGG | + | chr1.1:72962284-72962303 | MS.gene006331:CDS | 30.0% | |
| ATAGTTGTTGACCCAATATA+GGG | - | chr1.1:72960685-72960704 | None:intergenic | 30.0% | |
| ATATCTTCAACAAATGTGGT+GGG | + | chr1.1:72962211-72962230 | MS.gene006331:CDS | 30.0% | |
| ATGTGTGAATAATTTGATGG+TGG | - | chr1.1:72960574-72960593 | None:intergenic | 30.0% | |
| ATTGATTGTACTCATACCAA+AGG | + | chr1.1:72962527-72962546 | MS.gene006331:CDS | 30.0% | |
| CAAAGACACTTCACATAATT+GGG | - | chr1.1:72961732-72961751 | None:intergenic | 30.0% | |
| CAAGACTAAACATGTATAAG+AGG | - | chr1.1:72960726-72960745 | None:intergenic | 30.0% | |
| CATATTCCACGAATAGAATA+TGG | - | chr1.1:72961664-72961683 | None:intergenic | 30.0% | |
| CATTACTTTCCCTTAAACAA+AGG | - | chr1.1:72961599-72961618 | None:intergenic | 30.0% | |
| GACACACATTGAAAATGTTT+AGG | - | chr1.1:72960364-72960383 | None:intergenic | 30.0% | |
| GATCGCATATTATAATGAGA+AGG | - | chr1.1:72961839-72961858 | None:intergenic | 30.0% | |
| TCGCATATTATAATGAGAAG+GGG | - | chr1.1:72961837-72961856 | None:intergenic | 30.0% | |
| TGAAGCTAAGTGAAAAATCA+AGG | - | chr1.1:72960002-72960021 | None:intergenic | 30.0% | |
| TGATATATGCAAATTGGCTA+GGG | + | chr1.1:72959778-72959797 | MS.gene006331:CDS | 30.0% | |
| TGTTTGTCTACAAACCAATT+GGG | - | chr1.1:72961899-72961918 | None:intergenic | 30.0% | |
| TTCTTGGAATATATCCCAAT+TGG | + | chr1.1:72961882-72961901 | MS.gene006331:intron | 30.0% | |
| ! | ACATTTTCCTGAAATTACGA+TGG | + | chr1.1:72961398-72961417 | MS.gene006331:intron | 30.0% |
| ! | CAAATAGTTTGTGTAAGAGA+AGG | + | chr1.1:72960599-72960618 | MS.gene006331:intron | 30.0% |
| ! | GGTTTGTTCAGATTATTCTT+TGG | - | chr1.1:72961210-72961229 | None:intergenic | 30.0% |
| ! | TCAAAGTCTTTGAAGATAAC+AGG | + | chr1.1:72960163-72960182 | MS.gene006331:CDS | 30.0% |
| ! | TTAGAAGGAACTGTTGTTTA+AGG | + | chr1.1:72961330-72961349 | MS.gene006331:intron | 30.0% |
| ! | TTGATTTTTATGGGCTCATT+GGG | - | chr1.1:72962491-72962510 | None:intergenic | 30.0% |
| !! | CTTATACATGTTTAGTCTTG+AGG | + | chr1.1:72960726-72960745 | MS.gene006331:intron | 30.0% |
| !! | TCTGGTATAGGAAGTTTTAT+TGG | + | chr1.1:72960105-72960124 | MS.gene006331:intron | 30.0% |
| !!! | AATATGTTCGGCTCTTTTTT+TGG | + | chr1.1:72961054-72961073 | MS.gene006331:intron | 30.0% |
| !!! | TTATTTTGACCCTGTTTTGA+AGG | + | chr1.1:72960300-72960319 | MS.gene006331:intron | 30.0% |
| AAAGCTTCCATCGTAATTTC+AGG | - | chr1.1:72961408-72961427 | None:intergenic | 35.0% | |
| AAGAAGCTCTATGAAAAGCA+CGG | - | chr1.1:72959808-72959827 | None:intergenic | 35.0% | |
| AGAAACATAGCCTTCAAAAC+AGG | - | chr1.1:72960313-72960332 | None:intergenic | 35.0% | |
| AGCAGTAATATTAACGGTTG+AGG | - | chr1.1:72961861-72961880 | None:intergenic | 35.0% | |
| AGTCTTTCTCTAAACACAGT+TGG | - | chr1.1:72962584-72962603 | None:intergenic | 35.0% | |
| CATAACTTTCAGACTCCAAT+TGG | + | chr1.1:72962283-72962302 | MS.gene006331:CDS | 35.0% | |
| CATATCTTCAACAAATGTGG+TGG | + | chr1.1:72962210-72962229 | MS.gene006331:CDS | 35.0% | |
| CCAAAGACACTTCACATAAT+TGG | - | chr1.1:72961733-72961752 | None:intergenic | 35.0% | |
| CGCATATTATAATGAGAAGG+GGG | - | chr1.1:72961836-72961855 | None:intergenic | 35.0% | |
| CTAGCCAATTTGCATATATC+AGG | - | chr1.1:72959779-72959798 | None:intergenic | 35.0% | |
| CTATGGCAGTTTCTTTATGA+GGG | + | chr1.1:72961434-72961453 | MS.gene006331:intron | 35.0% | |
| CTCATAAAGAAACTGCCATA+GGG | - | chr1.1:72961435-72961454 | None:intergenic | 35.0% | |
| CTGATATATGCAAATTGGCT+AGG | + | chr1.1:72959777-72959796 | MS.gene006331:CDS | 35.0% | |
| CTGTTTGTCTACAAACCAAT+TGG | - | chr1.1:72961900-72961919 | None:intergenic | 35.0% | |
| GAAACATAGCCTTCAAAACA+GGG | - | chr1.1:72960312-72960331 | None:intergenic | 35.0% | |
| GACATCTTTCTTAGTCATAG+TGG | - | chr1.1:72959912-72959931 | None:intergenic | 35.0% | |
| GATAGTTGTTGACCCAATAT+AGG | - | chr1.1:72960686-72960705 | None:intergenic | 35.0% | |
| GCATATTATAATGAGAAGGG+GGG | - | chr1.1:72961835-72961854 | None:intergenic | 35.0% | |
| GGAAAGTCATCAAAACGATT+GGG | + | chr1.1:72962305-72962324 | MS.gene006331:CDS | 35.0% | |
| TAGATTCCAACTCTCTACAT+CGG | + | chr1.1:72962379-72962398 | MS.gene006331:CDS | 35.0% | |
| TATGGCAGTTTCTTTATGAG+GGG | + | chr1.1:72961435-72961454 | MS.gene006331:intron | 35.0% | |
| TATTCACAGGTTCAAGAATG+TGG | + | chr1.1:72962187-72962206 | MS.gene006331:intron | 35.0% | |
| TCCACCTGATATATGCAAAT+TGG | + | chr1.1:72959772-72959791 | MS.gene006331:CDS | 35.0% | |
| TCTCACATTGAAATGAGACA+AGG | + | chr1.1:72960642-72960661 | MS.gene006331:intron | 35.0% | |
| TGGCATATCTTCAACAAATG+TGG | + | chr1.1:72962207-72962226 | MS.gene006331:CDS | 35.0% | |
| TGTAGAGAGTTGGAATCTAA+CGG | - | chr1.1:72962378-72962397 | None:intergenic | 35.0% | |
| TGTGTTTATAACGGTGTATG+CGG | + | chr1.1:72960796-72960815 | MS.gene006331:intron | 35.0% | |
| TTACCATGTTGGAGATTTCA+TGG | + | chr1.1:72962457-72962476 | MS.gene006331:CDS | 35.0% | |
| TTGGATTTACATTCCAACTG+AGG | + | chr1.1:72960204-72960223 | MS.gene006331:CDS | 35.0% | |
| ! | CCAATTATGTGAAGTGTCTT+TGG | + | chr1.1:72961730-72961749 | MS.gene006331:intron | 35.0% |
| ! | CTTGATTTTTATGGGCTCAT+TGG | - | chr1.1:72962492-72962511 | None:intergenic | 35.0% |
| ! | TAGTTTGTGTAAGAGAAGGT+TGG | + | chr1.1:72960603-72960622 | MS.gene006331:intron | 35.0% |
| !! | ATCTCAGAGTGTTATTTGCA+TGG | + | chr1.1:72962416-72962435 | MS.gene006331:CDS | 35.0% |
| !! | GTTTTATTGGACAAATGCAG+TGG | + | chr1.1:72960118-72960137 | MS.gene006331:CDS | 35.0% |
| !! | GTTTTGATGACTTTCCCAAT+TGG | - | chr1.1:72962301-72962320 | None:intergenic | 35.0% |
| !! | TCTCAGAGTGTTATTTGCAT+GGG | + | chr1.1:72962417-72962436 | MS.gene006331:CDS | 35.0% |
| !! | TTTGATGGTGGCTAAATTGA+TGG | - | chr1.1:72960562-72960581 | None:intergenic | 35.0% |
| !!! | TGTTTTGAAGGCTATGTTTC+TGG | + | chr1.1:72960312-72960331 | MS.gene006331:intron | 35.0% |
| !!! | TTCTTCTGCTGATTTTGTGT+GGG | + | chr1.1:72959823-72959842 | MS.gene006331:CDS | 35.0% |
| ATGGCAGTTTCTTTATGAGG+GGG | + | chr1.1:72961436-72961455 | MS.gene006331:intron | 40.0% | |
| CAACCATGAAATCTCCAACA+TGG | - | chr1.1:72962463-72962482 | None:intergenic | 40.0% | |
| CCTATGGCAGTTTCTTTATG+AGG | + | chr1.1:72961433-72961452 | MS.gene006331:intron | 40.0% | |
| CCTCATAAAGAAACTGCCAT+AGG | - | chr1.1:72961436-72961455 | None:intergenic | 40.0% | |
| CTAGAGTTTGTATTCCCTGT+GGG | + | chr1.1:72962251-72962270 | MS.gene006331:CDS | 40.0% | |
| GATTGTACTCATACCAAAGG+CGG | + | chr1.1:72962530-72962549 | MS.gene006331:CDS | 40.0% | |
| GCAAGAAACTTGTAGCATGA+TGG | - | chr1.1:72959860-72959879 | None:intergenic | 40.0% | |
| GCAATGCCATATTCTATTCG+TGG | + | chr1.1:72961655-72961674 | MS.gene006331:intron | 40.0% | |
| GCCAATTTGCATATATCAGG+TGG | - | chr1.1:72959776-72959795 | None:intergenic | 40.0% | |
| GGGAAAGTCATCAAAACGAT+TGG | + | chr1.1:72962304-72962323 | MS.gene006331:CDS | 40.0% | |
| GTAGAGAGTTGGAATCTAAC+GGG | - | chr1.1:72962377-72962396 | None:intergenic | 40.0% | |
| TGATTGCACTATCTATGCAG+AGG | - | chr1.1:72962556-72962575 | None:intergenic | 40.0% | |
| TGCAACGATGATCAAGTTCA+TGG | + | chr1.1:72962338-72962357 | MS.gene006331:CDS | 40.0% | |
| TGGATCAAGATGCATGAGTA+TGG | - | chr1.1:72959756-72959775 | None:intergenic | 40.0% | |
| TGTCAACCTAATCGCTTTGA+CGG | + | chr1.1:72959944-72959963 | MS.gene006331:CDS | 40.0% | |
| TGTTTAGGAGTCAAGACACA+TGG | - | chr1.1:72960349-72960368 | None:intergenic | 40.0% | |
| TTATGCTGTAACTTCCCACA+GGG | - | chr1.1:72962268-72962287 | None:intergenic | 40.0% | |
| ! | CAATGGGCTTATTACCATGT+TGG | + | chr1.1:72962446-72962465 | MS.gene006331:CDS | 40.0% |
| ! | TATTTTTCATGTGGCAGCTG+AGG | + | chr1.1:72960885-72960904 | MS.gene006331:intron | 40.0% |
| ! | TGGGCAAATAGAAGCTTTTG+TGG | - | chr1.1:72961713-72961732 | None:intergenic | 40.0% |
| !! | ATGTGGTGGGTTGAAGTAAT+AGG | + | chr1.1:72962224-72962243 | MS.gene006331:CDS | 40.0% |
| !!! | CTTCTTCTGCTGATTTTGTG+TGG | + | chr1.1:72959822-72959841 | MS.gene006331:CDS | 40.0% |
| ACATTCCAACTGAGGAATCC+AGG | + | chr1.1:72960212-72960231 | MS.gene006331:CDS | 45.0% | |
| ACGATGATCAAGTTCATGGC+TGG | + | chr1.1:72962342-72962361 | MS.gene006331:CDS | 45.0% | |
| ATGGAAGCTTTCTCACCCTA+TGG | + | chr1.1:72961417-72961436 | MS.gene006331:intron | 45.0% | |
| ATGTGGCAGCTGAGGTAAAA+GGG | + | chr1.1:72960893-72960912 | MS.gene006331:intron | 45.0% | |
| CGATGATCAAGTTCATGGCT+GGG | + | chr1.1:72962343-72962362 | MS.gene006331:CDS | 45.0% | |
| GCTAGAGTTTGTATTCCCTG+TGG | + | chr1.1:72962250-72962269 | MS.gene006331:CDS | 45.0% | |
| GTGTATGCGGTGGACAATAA+GGG | + | chr1.1:72960809-72960828 | MS.gene006331:intron | 45.0% | |
| GTTATGCTGTAACTTCCCAC+AGG | - | chr1.1:72962269-72962288 | None:intergenic | 45.0% | |
| GTTTATAACGGTGTATGCGG+TGG | + | chr1.1:72960799-72960818 | MS.gene006331:intron | 45.0% | |
| TCTATAGTGCATCTCTCACC+TGG | - | chr1.1:72960233-72960252 | None:intergenic | 45.0% | |
| TTCCAACTCTCTACATCGGA+CGG | + | chr1.1:72962383-72962402 | MS.gene006331:CDS | 45.0% | |
| !! | AGTGTTATTTGCATGGGCCA+GGG | + | chr1.1:72962423-72962442 | MS.gene006331:CDS | 45.0% |
| !! | TATATTATATTAATAAACTT+AGG | + | chr1.1:72961763-72961782 | MS.gene006331:intron | 5.0% |
| CAACCTAATCGCTTTGACGG+TGG | + | chr1.1:72959947-72959966 | MS.gene006331:CDS | 50.0% | |
| CATGTGGCAGCTGAGGTAAA+AGG | + | chr1.1:72960892-72960911 | MS.gene006331:intron | 50.0% | |
| GGTGTATGCGGTGGACAATA+AGG | + | chr1.1:72960808-72960827 | MS.gene006331:intron | 50.0% | |
| GTACCACCGTCAAAGCGATT+AGG | - | chr1.1:72959953-72959972 | None:intergenic | 50.0% | |
| TCTCACCTGGATTCCTCAGT+TGG | - | chr1.1:72960220-72960239 | None:intergenic | 50.0% | |
| TGGTAATAAGCCCATTGCCC+TGG | - | chr1.1:72962443-72962462 | None:intergenic | 50.0% | |
| TGTGGCAGCTGAGGTAAAAG+GGG | + | chr1.1:72960894-72960913 | MS.gene006331:intron | 50.0% | |
| !! | GAGTGTTATTTGCATGGGCC+AGG | + | chr1.1:72962422-72962441 | MS.gene006331:CDS | 50.0% |
| ATCTATGCAGAGGCCGCCTT+TGG | - | chr1.1:72962546-72962565 | None:intergenic | 55.0% | |
| ATTTGCATGGGCCAGGGCAA+TGG | + | chr1.1:72962429-72962448 | MS.gene006331:CDS | 55.0% | |
| GACCGTCCGATGTAGAGAGT+TGG | - | chr1.1:72962388-72962407 | None:intergenic | 55.0% | |
| GTGGCAGCTGAGGTAAAAGG+GGG | + | chr1.1:72960895-72960914 | MS.gene006331:intron | 55.0% | |
| TGGCAGCTGAGGTAAAAGGG+GGG | + | chr1.1:72960896-72960915 | MS.gene006331:intron | 55.0% | |
| TTTGCATGGGCCAGGGCAAT+GGG | + | chr1.1:72962430-72962449 | MS.gene006331:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 72959641 | 72962616 | 72959641 | ID=MS.gene006331 |
| chr1.1 | mRNA | 72959641 | 72962616 | 72959641 | ID=MS.gene006331.t1;Parent=MS.gene006331 |
| chr1.1 | exon | 72959641 | 72959976 | 72959641 | ID=MS.gene006331.t1.exon1;Parent=MS.gene006331.t1 |
| chr1.1 | CDS | 72959641 | 72959976 | 72959641 | ID=cds.MS.gene006331.t1;Parent=MS.gene006331.t1 |
| chr1.1 | exon | 72960115 | 72960233 | 72960115 | ID=MS.gene006331.t1.exon2;Parent=MS.gene006331.t1 |
| chr1.1 | CDS | 72960115 | 72960233 | 72960115 | ID=cds.MS.gene006331.t1;Parent=MS.gene006331.t1 |
| chr1.1 | exon | 72962196 | 72962616 | 72962196 | ID=MS.gene006331.t1.exon3;Parent=MS.gene006331.t1 |
| chr1.1 | CDS | 72962196 | 72962616 | 72962196 | ID=cds.MS.gene006331.t1;Parent=MS.gene006331.t1 |
| Gene Sequence |
| Protein sequence |
