Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72988.t1 | XP_013457676.1 | 95.5 | 286 | 13 | 0 | 1 | 286 | 1 | 286 | 4.50E-167 | 597 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72988.t1 | Q9LN77 | 68.4 | 269 | 81 | 3 | 16 | 282 | 25 | 291 | 8.7e-111 | 401.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72988.t1 | A0A072UPT1 | 95.5 | 286 | 13 | 0 | 1 | 286 | 1 | 286 | 3.2e-167 | 597.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052011 | MS.gene72988 | -0.810802 | 9.62E-51 | -1.69E-46 |
| MS.gene052333 | MS.gene72988 | 0.829684 | 4.49E-55 | -1.69E-46 |
| MS.gene052389 | MS.gene72988 | 0.810472 | 1.13E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene72988 | 0.818624 | 1.78E-52 | -1.69E-46 |
| MS.gene054468 | MS.gene72988 | 0.815732 | 7.95E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene72988 | 0.830032 | 3.69E-55 | -1.69E-46 |
| MS.gene056297 | MS.gene72988 | 0.833118 | 6.41E-56 | -1.69E-46 |
| MS.gene059609 | MS.gene72988 | 0.815966 | 7.05E-52 | -1.69E-46 |
| MS.gene059958 | MS.gene72988 | 0.830041 | 3.67E-55 | -1.69E-46 |
| MS.gene061114 | MS.gene72988 | -0.832515 | 9.04E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072532 | MS.gene72988 | PPI |
| MS.gene41397 | MS.gene72988 | PPI |
| MS.gene49051 | MS.gene72988 | PPI |
| MS.gene22796 | MS.gene72988 | PPI |
| MS.gene40823 | MS.gene72988 | PPI |
| MS.gene007330 | MS.gene72988 | PPI |
| MS.gene34457 | MS.gene72988 | PPI |
| MS.gene050935 | MS.gene72988 | PPI |
| MS.gene007614 | MS.gene72988 | PPI |
| MS.gene006331 | MS.gene72988 | PPI |
| MS.gene020575 | MS.gene72988 | PPI |
| MS.gene054425 | MS.gene72988 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72988.t1 | MTR_4g102770 | 95.455 | 286 | 13 | 0 | 1 | 286 | 1 | 286 | 0.0 | 553 |
| MS.gene72988.t1 | MTR_5g010800 | 74.216 | 287 | 69 | 3 | 1 | 286 | 1 | 283 | 5.20e-159 | 444 |
| MS.gene72988.t1 | MTR_0002s0020 | 60.498 | 281 | 104 | 2 | 1 | 274 | 1 | 281 | 5.52e-126 | 360 |
| MS.gene72988.t1 | MTR_1g101390 | 61.923 | 260 | 98 | 1 | 19 | 278 | 28 | 286 | 1.44e-120 | 347 |
| MS.gene72988.t1 | MTR_0113s0040 | 58.303 | 271 | 111 | 2 | 13 | 282 | 16 | 285 | 5.97e-117 | 337 |
| MS.gene72988.t1 | MTR_7g103380 | 56.014 | 291 | 116 | 2 | 1 | 280 | 1 | 290 | 1.04e-113 | 330 |
| MS.gene72988.t1 | MTR_7g112560 | 26.277 | 274 | 169 | 7 | 22 | 278 | 4 | 261 | 2.05e-28 | 110 |
| MS.gene72988.t1 | MTR_4g023570 | 26.744 | 258 | 166 | 5 | 22 | 277 | 4 | 240 | 1.22e-26 | 104 |
| MS.gene72988.t1 | MTR_1g083580 | 25.862 | 290 | 165 | 9 | 18 | 273 | 7 | 280 | 5.22e-22 | 93.2 |
| MS.gene72988.t1 | MTR_7g112550 | 25.000 | 280 | 183 | 5 | 18 | 273 | 6 | 282 | 5.62e-21 | 90.5 |
| MS.gene72988.t1 | MTR_1g079180 | 35.417 | 144 | 92 | 1 | 21 | 163 | 6 | 149 | 7.09e-21 | 89.7 |
| MS.gene72988.t1 | MTR_1g079460 | 28.090 | 267 | 175 | 6 | 21 | 275 | 6 | 267 | 1.31e-20 | 89.4 |
| MS.gene72988.t1 | MTR_1g079260 | 36.111 | 144 | 88 | 2 | 21 | 163 | 6 | 146 | 1.37e-20 | 89.4 |
| MS.gene72988.t1 | MTR_1g079230 | 35.417 | 144 | 89 | 2 | 21 | 163 | 6 | 146 | 1.06e-19 | 86.7 |
| MS.gene72988.t1 | MTR_1g079370 | 34.247 | 146 | 92 | 2 | 19 | 163 | 4 | 146 | 7.74e-19 | 84.3 |
| MS.gene72988.t1 | MTR_1g100613 | 36.154 | 130 | 79 | 2 | 36 | 164 | 6 | 132 | 4.16e-18 | 82.0 |
| MS.gene72988.t1 | MTR_1g079380 | 28.223 | 287 | 174 | 8 | 19 | 286 | 4 | 277 | 4.22e-18 | 82.8 |
| MS.gene72988.t1 | MTR_1g079140 | 36.054 | 147 | 88 | 3 | 21 | 163 | 15 | 159 | 4.83e-18 | 82.8 |
| MS.gene72988.t1 | MTR_1g100597 | 33.333 | 144 | 92 | 2 | 21 | 163 | 6 | 146 | 2.01e-17 | 80.5 |
| MS.gene72988.t1 | MTR_1g079410 | 32.667 | 150 | 99 | 2 | 16 | 163 | 5 | 154 | 3.26e-17 | 80.1 |
| MS.gene72988.t1 | MTR_1g079200 | 33.562 | 146 | 92 | 3 | 21 | 165 | 6 | 147 | 3.53e-17 | 79.7 |
| MS.gene72988.t1 | MTR_3g452600 | 32.886 | 149 | 90 | 5 | 19 | 164 | 10 | 151 | 3.01e-15 | 74.3 |
| MS.gene72988.t1 | MTR_1g079400 | 31.944 | 144 | 96 | 2 | 22 | 163 | 15 | 158 | 1.82e-14 | 72.4 |
| MS.gene72988.t1 | MTR_1g079850 | 32.653 | 147 | 93 | 3 | 21 | 163 | 6 | 150 | 2.69e-14 | 72.0 |
| MS.gene72988.t1 | MTR_1g079250 | 33.333 | 147 | 91 | 3 | 21 | 163 | 6 | 149 | 3.03e-13 | 68.9 |
| MS.gene72988.t1 | MTR_1g079350 | 27.805 | 205 | 127 | 5 | 21 | 219 | 6 | 195 | 3.22e-12 | 65.9 |
| MS.gene72988.t1 | MTR_3g450990 | 32.847 | 137 | 80 | 6 | 19 | 152 | 10 | 137 | 4.54e-12 | 65.5 |
| MS.gene72988.t1 | MTR_3g006850 | 27.326 | 172 | 106 | 4 | 7 | 163 | 5 | 172 | 4.89e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72988.t1 | AT1G12710 | 68.401 | 269 | 81 | 3 | 16 | 282 | 25 | 291 | 1.64e-135 | 385 |
| MS.gene72988.t1 | AT3G61060 | 63.158 | 266 | 96 | 2 | 14 | 278 | 20 | 284 | 1.44e-127 | 365 |
| MS.gene72988.t1 | AT1G12710 | 59.164 | 311 | 81 | 4 | 16 | 282 | 25 | 333 | 7.79e-127 | 364 |
| MS.gene72988.t1 | AT3G61060 | 62.921 | 267 | 96 | 3 | 14 | 278 | 20 | 285 | 9.31e-126 | 360 |
| MS.gene72988.t1 | AT1G63090 | 66.154 | 260 | 85 | 2 | 16 | 274 | 23 | 280 | 2.53e-123 | 354 |
| MS.gene72988.t1 | AT5G52120 | 52.536 | 276 | 126 | 1 | 7 | 277 | 9 | 284 | 1.37e-104 | 306 |
| MS.gene72988.t1 | AT3G53000 | 54.478 | 268 | 109 | 3 | 17 | 273 | 19 | 284 | 2.89e-100 | 296 |
| MS.gene72988.t1 | AT2G02360 | 36.129 | 155 | 85 | 4 | 10 | 161 | 8 | 151 | 5.50e-25 | 101 |
| MS.gene72988.t1 | AT2G02340 | 31.429 | 175 | 113 | 3 | 5 | 176 | 22 | 192 | 9.77e-23 | 95.9 |
| MS.gene72988.t1 | AT2G02230 | 34.266 | 143 | 87 | 2 | 22 | 163 | 35 | 171 | 4.60e-21 | 91.7 |
| MS.gene72988.t1 | AT2G02240 | 34.507 | 142 | 86 | 3 | 22 | 162 | 64 | 199 | 4.49e-20 | 88.6 |
| MS.gene72988.t1 | AT1G09155 | 24.382 | 283 | 185 | 6 | 22 | 277 | 3 | 283 | 5.80e-20 | 87.8 |
| MS.gene72988.t1 | AT5G24560 | 28.276 | 145 | 97 | 2 | 21 | 164 | 5 | 143 | 6.06e-18 | 80.5 |
| MS.gene72988.t1 | AT2G02350 | 31.544 | 149 | 86 | 5 | 18 | 160 | 23 | 161 | 8.20e-18 | 82.0 |
| MS.gene72988.t1 | AT2G02250 | 27.875 | 287 | 165 | 12 | 17 | 283 | 44 | 308 | 1.04e-17 | 82.0 |
| MS.gene72988.t1 | AT2G02310 | 25.651 | 269 | 176 | 8 | 21 | 275 | 47 | 305 | 4.41e-17 | 80.1 |
| MS.gene72988.t1 | AT1G80110 | 24.151 | 265 | 181 | 8 | 19 | 273 | 1 | 255 | 4.46e-17 | 79.3 |
| MS.gene72988.t1 | AT1G56240 | 25.714 | 280 | 177 | 7 | 22 | 273 | 4 | 280 | 1.51e-15 | 75.5 |
| MS.gene72988.t1 | AT1G56250 | 23.891 | 293 | 166 | 6 | 22 | 273 | 4 | 280 | 2.43e-15 | 74.7 |
| MS.gene72988.t1 | AT2G02300 | 25.912 | 274 | 167 | 9 | 18 | 277 | 33 | 284 | 4.32e-14 | 71.2 |
| MS.gene72988.t1 | AT2G02320 | 24.746 | 295 | 181 | 12 | 4 | 275 | 24 | 300 | 8.87e-14 | 70.9 |
Find 62 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAACAGCTACACAGCTTTC+TGG | 0.183101 | 8.3:-19027896 | None:intergenic |
| TTATTCTTCCGAATACATTT+AGG | 0.199539 | 8.3:+19029203 | MS.gene72988:CDS |
| TTGATTCTTCAGTGGGAATA+TGG | 0.245615 | 8.3:-19028318 | None:intergenic |
| ATCATAATTAGAGGGAAGTT+TGG | 0.273067 | 8.3:-19028011 | None:intergenic |
| TATTATTATTGTAGAAAGTT+TGG | 0.283320 | 8.3:+19028209 | MS.gene72988:intron |
| GCTAAAGGGTTGTCAATAAC+TGG | 0.296742 | 8.3:+19028271 | MS.gene72988:CDS |
| CTTCAAACCACCAGATTTGT+TGG | 0.309545 | 8.3:-19029136 | None:intergenic |
| AATTCTCCTAAACTTGGTTT+TGG | 0.321554 | 8.3:-19027872 | None:intergenic |
| TATTCTTCCGAATACATTTA+GGG | 0.326850 | 8.3:+19029204 | MS.gene72988:CDS |
| GGGAAACCCGCCAAGAGATT+TGG | 0.340849 | 8.3:+19029224 | MS.gene72988:CDS |
| CGGGTTTCCCTAAATGTATT+CGG | 0.356289 | 8.3:-19029211 | None:intergenic |
| AATTATAACATCATAATTAG+AGG | 0.373488 | 8.3:-19028020 | None:intergenic |
| CTATATGTTCCAGCTGGAAA+TGG | 0.373764 | 8.3:-19029179 | None:intergenic |
| TAAAGTGTGTTTGTCTATAT+CGG | 0.379273 | 8.3:+19028249 | MS.gene72988:CDS |
| GTCCATAGTTGGAATCTAAC+AGG | 0.395466 | 8.3:-19029293 | None:intergenic |
| AAGCTGTGTAGCTGTTATAA+TGG | 0.396206 | 8.3:+19027901 | MS.gene72988:CDS |
| TCATCACCAAAACCAAGTTT+AGG | 0.402083 | 8.3:+19027866 | MS.gene72988:CDS |
| TTGCGTATCTCCAACAAATC+TGG | 0.415817 | 8.3:+19029126 | MS.gene72988:CDS |
| AGCCTGTTAGATTCCAACTA+TGG | 0.436078 | 8.3:+19029291 | MS.gene72988:CDS |
| TGGTAATAGCGCCATTTACC+TGG | 0.441087 | 8.3:-19029359 | None:intergenic |
| TGCAACACAGAACATGTTCA+TGG | 0.443142 | 8.3:+19029257 | MS.gene72988:CDS |
| GGATTGATGATCGAAGATAT+TGG | 0.446080 | 8.3:+19028293 | MS.gene72988:CDS |
| CCGCCAAGAGATTTGGAAGA+AGG | 0.447038 | 8.3:+19029231 | MS.gene72988:CDS |
| AGCTGTTATAATGGAATACT+TGG | 0.448318 | 8.3:+19027910 | MS.gene72988:CDS |
| AACCCTTCTTCCAAATCTCT+TGG | 0.453456 | 8.3:-19029234 | None:intergenic |
| CCTTCTCATTTGGGGAAAAG+AGG | 0.454751 | 8.3:+19028070 | MS.gene72988:CDS |
| AGCTTCAATACTTTCGATGA+AGG | 0.456690 | 8.3:+19028112 | MS.gene72988:CDS |
| CCTTCTTCCAAATCTCTTGG+CGG | 0.463503 | 8.3:-19029231 | None:intergenic |
| TCTGGTAATTCTCCTAAACT+TGG | 0.464696 | 8.3:-19027878 | None:intergenic |
| CACAGAACATGTTCATGGTT+GGG | 0.465386 | 8.3:+19029262 | MS.gene72988:CDS |
| CGCCAAGAGATTTGGAAGAA+GGG | 0.472287 | 8.3:+19029232 | MS.gene72988:CDS |
| TGTTTGTCTATATCGGCTAA+AGG | 0.472662 | 8.3:+19028256 | MS.gene72988:CDS |
| CTTCTTCCAAATCTCTTGGC+GGG | 0.472849 | 8.3:-19029230 | None:intergenic |
| TATATGTTCCAGCTGGAAAT+GGG | 0.474195 | 8.3:-19029178 | None:intergenic |
| GTTTGTCTATATCGGCTAAA+GGG | 0.489431 | 8.3:+19028257 | MS.gene72988:CDS |
| CTTCTCATTTGGGGAAAAGA+GGG | 0.492520 | 8.3:+19028071 | MS.gene72988:CDS |
| AGTTTGGTTGGATAGAAGCA+TGG | 0.503977 | 8.3:+19028225 | MS.gene72988:CDS |
| ATTATTGTAGAAAGTTTGGT+TGG | 0.506585 | 8.3:+19028213 | MS.gene72988:intron |
| TCTTACCTTGATTCTTCAGT+GGG | 0.519553 | 8.3:-19028325 | None:intergenic |
| ACACAGAACATGTTCATGGT+TGG | 0.524349 | 8.3:+19029261 | MS.gene72988:CDS |
| GTATCCTAGTGAGTTTAGAA+AGG | 0.524884 | 8.3:+19029496 | MS.gene72988:CDS |
| GATCATCTGAAGTCCATAGT+TGG | 0.529126 | 8.3:-19029304 | None:intergenic |
| AATAAGCTATATGTTCCAGC+TGG | 0.533363 | 8.3:-19029185 | None:intergenic |
| ATTGAGTTCCCATTTCCAGC+TGG | 0.535563 | 8.3:+19029170 | MS.gene72988:CDS |
| GTTTGGTTGGATAGAAGCAT+GGG | 0.542266 | 8.3:+19028226 | MS.gene72988:CDS |
| ATTGATTGCACACACACTAA+AGG | 0.551213 | 8.3:+19029446 | MS.gene72988:CDS |
| TTAACCTTTCTAAACTCACT+AGG | 0.563266 | 8.3:-19029500 | None:intergenic |
| ATCTTACCTTGATTCTTCAG+TGG | 0.563619 | 8.3:-19028326 | None:intergenic |
| ACAAATCTGGTGGTTTGAAG+TGG | 0.565964 | 8.3:+19029139 | MS.gene72988:CDS |
| ATCTTCAACCACAAAATCGC+CGG | 0.570051 | 8.3:-19029384 | None:intergenic |
| CTAAAGGGTTGTCAATAACT+GGG | 0.571485 | 8.3:+19028272 | MS.gene72988:CDS |
| ATATTCCCACTGAAGAATCA+AGG | 0.574725 | 8.3:+19028320 | MS.gene72988:CDS |
| ATTATAACATCATAATTAGA+GGG | 0.581280 | 8.3:-19028019 | None:intergenic |
| CAACCACAAAATCGCCGGCA+TGG | 0.585784 | 8.3:-19029379 | None:intergenic |
| GAAGCTAATTTGCAAATCTG+AGG | 0.595553 | 8.3:-19027938 | None:intergenic |
| CGTATCTCCAACAAATCTGG+TGG | 0.613155 | 8.3:+19029129 | MS.gene72988:CDS |
| GCTAATTTGCAAATCTGAGG+AGG | 0.616624 | 8.3:-19027935 | None:intergenic |
| AAATGGCGCTATTACCATGC+CGG | 0.633820 | 8.3:+19029365 | MS.gene72988:CDS |
| TACTTTCGATGAAGGAACCA+AGG | 0.641635 | 8.3:+19028120 | MS.gene72988:CDS |
| GATTGCACACACACTAAAGG+TGG | 0.653493 | 8.3:+19029449 | MS.gene72988:CDS |
| AAGAAGCACCATGAAAAGCA+CGG | 0.655921 | 8.3:-19027967 | None:intergenic |
| ATCTGGTGGTTTGAAGTGGA+CGG | 0.666571 | 8.3:+19029143 | MS.gene72988:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACTAAAATTAATTAAAAG+AGG | - | chr8.3:19028650-19028669 | None:intergenic | 10.0% |
| !! | AATTATAACATCATAATTAG+AGG | - | chr8.3:19028023-19028042 | None:intergenic | 15.0% |
| !! | ATAATTCAAAAAATCTTTGA+TGG | + | chr8.3:19028037-19028056 | MS.gene72988:CDS | 15.0% |
| !! | ATTATAACATCATAATTAGA+GGG | - | chr8.3:19028022-19028041 | None:intergenic | 15.0% |
| !! | TATTATTATTGTAGAAAGTT+TGG | + | chr8.3:19028209-19028228 | MS.gene72988:intron | 15.0% |
| !!! | TTGAATTGATTTTATTGATT+TGG | + | chr8.3:19028522-19028541 | MS.gene72988:intron | 15.0% |
| !!! | TTGATTTTCTTTTATTATTC+TGG | + | chr8.3:19028923-19028942 | MS.gene72988:intron | 15.0% |
| !! | GAAATTAAAAAGACATAACT+TGG | - | chr8.3:19029005-19029024 | None:intergenic | 20.0% |
| !!! | TTAGTTTGGAAATAAAGTTT+CGG | + | chr8.3:19029060-19029079 | MS.gene72988:intron | 20.0% |
| !!! | TTATAGGTAGAATTGATTTT+GGG | + | chr8.3:19028706-19028725 | MS.gene72988:intron | 20.0% |
| !!! | TTTATGTTAATTTGTTACCT+TGG | - | chr8.3:19028140-19028159 | None:intergenic | 20.0% |
| ! | AAAATTATGCTTGGAGAATT+TGG | + | chr8.3:19028596-19028615 | MS.gene72988:intron | 25.0% |
| ! | ATTATTGTAGAAAGTTTGGT+TGG | + | chr8.3:19028213-19028232 | MS.gene72988:intron | 25.0% |
| ! | GCAAATGATAAAGATAACAT+TGG | - | chr8.3:19029093-19029112 | None:intergenic | 25.0% |
| ! | TAAAGTGTGTTTGTCTATAT+CGG | + | chr8.3:19028249-19028268 | MS.gene72988:CDS | 25.0% |
| ! | TATTCTTCCGAATACATTTA+GGG | + | chr8.3:19029204-19029223 | MS.gene72988:CDS | 25.0% |
| ! | TTATTCTTCCGAATACATTT+AGG | + | chr8.3:19029203-19029222 | MS.gene72988:CDS | 25.0% |
| ! | TTTACGGAAAAAATTATGCT+TGG | + | chr8.3:19028587-19028606 | MS.gene72988:intron | 25.0% |
| ! | TTTATGTTTGCATGCATTTA+CGG | + | chr8.3:19028571-19028590 | MS.gene72988:intron | 25.0% |
| !! | CTATTAGTGTTGAATTAGTT+TGG | + | chr8.3:19029046-19029065 | MS.gene72988:intron | 25.0% |
| !! | TTTCATGTTCTAGTGTATTT+TGG | + | chr8.3:19028444-19028463 | MS.gene72988:intron | 25.0% |
| !!! | AAAATCGTTGCTTTTGTATA+TGG | + | chr8.3:19028158-19028177 | MS.gene72988:intron | 25.0% |
| !!! | CTTATAGGTAGAATTGATTT+TGG | + | chr8.3:19028705-19028724 | MS.gene72988:intron | 25.0% |
| !!! | TATAGGTAGAATTGATTTTG+GGG | + | chr8.3:19028707-19028726 | MS.gene72988:intron | 25.0% |
| AAAGCTAAGTATTTGACCTT+TGG | - | chr8.3:19028852-19028871 | None:intergenic | 30.0% | |
| AGCTAGAAATGATAGCTTAT+AGG | + | chr8.3:19028690-19028709 | MS.gene72988:intron | 30.0% | |
| ATCATAATTAGAGGGAAGTT+TGG | - | chr8.3:19028014-19028033 | None:intergenic | 30.0% | |
| GAAGAGAAAGATATTGATGA+AGG | + | chr8.3:19028894-19028913 | MS.gene72988:intron | 30.0% | |
| GACAGCAAATATGTTATGTT+TGG | - | chr8.3:19028758-19028777 | None:intergenic | 30.0% | |
| TGTGAACTATGAAGTTCAAA+GGG | + | chr8.3:19028386-19028405 | MS.gene72988:intron | 30.0% | |
| TTAACCTTTCTAAACTCACT+AGG | - | chr8.3:19029503-19029522 | None:intergenic | 30.0% | |
| ! | AATTCTCCTAAACTTGGTTT+TGG | - | chr8.3:19027875-19027894 | None:intergenic | 30.0% |
| ! | AGCTGTTATAATGGAATACT+TGG | + | chr8.3:19027910-19027929 | MS.gene72988:CDS | 30.0% |
| ! | TAACCAAAACTGATTCTAAG+AGG | + | chr8.3:19028791-19028810 | MS.gene72988:intron | 30.0% |
| ! | TCTTCTTTTCCTTCTCATTT+GGG | + | chr8.3:19028061-19028080 | MS.gene72988:CDS | 30.0% |
| ! | TTCTTCTTTTCCTTCTCATT+TGG | + | chr8.3:19028060-19028079 | MS.gene72988:CDS | 30.0% |
| !! | TTCTTTGGCTGATTTTGTTT+GGG | + | chr8.3:19027985-19028004 | MS.gene72988:CDS | 30.0% |
| !!! | ATCCATTTTTTCCCATGTTT+AGG | + | chr8.3:19028825-19028844 | MS.gene72988:intron | 30.0% |
| !!! | GAAACTAGACTTGCTAATTT+TGG | - | chr8.3:19029027-19029046 | None:intergenic | 30.0% |
| !!! | TCATCGCAATGTTTTTTGAA+AGG | + | chr8.3:19029335-19029354 | MS.gene72988:CDS | 30.0% |
| !!! | TTTTGGTGATGATGATGATT+GGG | - | chr8.3:19027858-19027877 | None:intergenic | 30.0% |
| AAGCTGTGTAGCTGTTATAA+TGG | + | chr8.3:19027901-19027920 | MS.gene72988:CDS | 35.0% | |
| AATAAGCTATATGTTCCAGC+TGG | - | chr8.3:19029188-19029207 | None:intergenic | 35.0% | |
| AGCTTCAATACTTTCGATGA+AGG | + | chr8.3:19028112-19028131 | MS.gene72988:CDS | 35.0% | |
| ATATTCCCACTGAAGAATCA+AGG | + | chr8.3:19028320-19028339 | MS.gene72988:CDS | 35.0% | |
| ATCTTACCTTGATTCTTCAG+TGG | - | chr8.3:19028329-19028348 | None:intergenic | 35.0% | |
| ATTGATTGCACACACACTAA+AGG | + | chr8.3:19029446-19029465 | MS.gene72988:CDS | 35.0% | |
| CTAAAGGGTTGTCAATAACT+GGG | + | chr8.3:19028272-19028291 | MS.gene72988:CDS | 35.0% | |
| GACCTAAACATGGGAAAAAA+TGG | - | chr8.3:19028830-19028849 | None:intergenic | 35.0% | |
| GTATCCTAGTGAGTTTAGAA+AGG | + | chr8.3:19029496-19029515 | MS.gene72988:CDS | 35.0% | |
| GTGAACTATGAAGTTCAAAG+GGG | + | chr8.3:19028387-19028406 | MS.gene72988:intron | 35.0% | |
| GTGTGAACTATGAAGTTCAA+AGG | + | chr8.3:19028385-19028404 | MS.gene72988:intron | 35.0% | |
| TATATGTTCCAGCTGGAAAT+GGG | - | chr8.3:19029181-19029200 | None:intergenic | 35.0% | |
| TCATCACCAAAACCAAGTTT+AGG | + | chr8.3:19027866-19027885 | MS.gene72988:CDS | 35.0% | |
| TCTGGTAATTCTCCTAAACT+TGG | - | chr8.3:19027881-19027900 | None:intergenic | 35.0% | |
| TCTTACCTTGATTCTTCAGT+GGG | - | chr8.3:19028328-19028347 | None:intergenic | 35.0% | |
| TTGATTCTTCAGTGGGAATA+TGG | - | chr8.3:19028321-19028340 | None:intergenic | 35.0% | |
| ! | AAATTCTGTTGGCGATTTTC+GGG | + | chr8.3:19028473-19028492 | MS.gene72988:intron | 35.0% |
| ! | CTTCTTTTCCTTCTCATTTG+GGG | + | chr8.3:19028062-19028081 | MS.gene72988:CDS | 35.0% |
| ! | GAAATTCTGTTGGCGATTTT+CGG | + | chr8.3:19028472-19028491 | MS.gene72988:intron | 35.0% |
| ! | GAAGCTAATTTGCAAATCTG+AGG | - | chr8.3:19027941-19027960 | None:intergenic | 35.0% |
| ! | GGATTGATGATCGAAGATAT+TGG | + | chr8.3:19028293-19028312 | MS.gene72988:CDS | 35.0% |
| ! | GTTTGTCTATATCGGCTAAA+GGG | + | chr8.3:19028257-19028276 | MS.gene72988:CDS | 35.0% |
| ! | TGTTTGTCTATATCGGCTAA+AGG | + | chr8.3:19028256-19028275 | MS.gene72988:CDS | 35.0% |
| !! | CTTCTTTGGCTGATTTTGTT+TGG | + | chr8.3:19027984-19028003 | MS.gene72988:CDS | 35.0% |
| !! | TTTGGTCTTGGAAATTCTGT+TGG | + | chr8.3:19028462-19028481 | MS.gene72988:intron | 35.0% |
| !! | TTTTGAAAGGTCCAGGTAAA+TGG | + | chr8.3:19029348-19029367 | MS.gene72988:CDS | 35.0% |
| !!! | CAATGTTTTTTGAAAGGTCC+AGG | + | chr8.3:19029341-19029360 | MS.gene72988:CDS | 35.0% |
| !!! | GTTCTAGTGTATTTTGGTCT+TGG | + | chr8.3:19028450-19028469 | MS.gene72988:intron | 35.0% |
| !!! | GTTTTGGTGATGATGATGAT+TGG | - | chr8.3:19027859-19027878 | None:intergenic | 35.0% |
| AACCCTTCTTCCAAATCTCT+TGG | - | chr8.3:19029237-19029256 | None:intergenic | 40.0% | |
| ACAAATCTGGTGGTTTGAAG+TGG | + | chr8.3:19029139-19029158 | MS.gene72988:CDS | 40.0% | |
| ACACAGAACATGTTCATGGT+TGG | + | chr8.3:19029261-19029280 | MS.gene72988:CDS | 40.0% | |
| AGCCTGTTAGATTCCAACTA+TGG | + | chr8.3:19029291-19029310 | MS.gene72988:CDS | 40.0% | |
| AGTTTGGTTGGATAGAAGCA+TGG | + | chr8.3:19028225-19028244 | MS.gene72988:CDS | 40.0% | |
| ATAACAGCTACACAGCTTTC+TGG | - | chr8.3:19027899-19027918 | None:intergenic | 40.0% | |
| ATCTTCAACCACAAAATCGC+CGG | - | chr8.3:19029387-19029406 | None:intergenic | 40.0% | |
| CACAGAACATGTTCATGGTT+GGG | + | chr8.3:19029262-19029281 | MS.gene72988:CDS | 40.0% | |
| CGGGTTTCCCTAAATGTATT+CGG | - | chr8.3:19029214-19029233 | None:intergenic | 40.0% | |
| CTATATGTTCCAGCTGGAAA+TGG | - | chr8.3:19029182-19029201 | None:intergenic | 40.0% | |
| CTTCAAACCACCAGATTTGT+TGG | - | chr8.3:19029139-19029158 | None:intergenic | 40.0% | |
| CTTCTCATTTGGGGAAAAGA+GGG | + | chr8.3:19028071-19028090 | MS.gene72988:CDS | 40.0% | |
| GCTAAAGGGTTGTCAATAAC+TGG | + | chr8.3:19028271-19028290 | MS.gene72988:CDS | 40.0% | |
| GGAAAAAATGGATCCACCTT+TGG | - | chr8.3:19028818-19028837 | None:intergenic | 40.0% | |
| GTCCATAGTTGGAATCTAAC+AGG | - | chr8.3:19029296-19029315 | None:intergenic | 40.0% | |
| TACTTTCGATGAAGGAACCA+AGG | + | chr8.3:19028120-19028139 | MS.gene72988:CDS | 40.0% | |
| TGACCTTTGGACCTAAACAT+GGG | - | chr8.3:19028839-19028858 | None:intergenic | 40.0% | |
| TGCAACACAGAACATGTTCA+TGG | + | chr8.3:19029257-19029276 | MS.gene72988:CDS | 40.0% | |
| TTGACCTTTGGACCTAAACA+TGG | - | chr8.3:19028840-19028859 | None:intergenic | 40.0% | |
| TTGCGTATCTCCAACAAATC+TGG | + | chr8.3:19029126-19029145 | MS.gene72988:CDS | 40.0% | |
| TTTCCCATGTTTAGGTCCAA+AGG | + | chr8.3:19028833-19028852 | MS.gene72988:intron | 40.0% | |
| ! | ACTGATTCTAAGAGGTCCAA+AGG | + | chr8.3:19028799-19028818 | MS.gene72988:intron | 40.0% |
| ! | GATCATCTGAAGTCCATAGT+TGG | - | chr8.3:19029307-19029326 | None:intergenic | 40.0% |
| ! | GCTAATTTGCAAATCTGAGG+AGG | - | chr8.3:19027938-19027957 | None:intergenic | 40.0% |
| ! | GGACCTCTTAGAATCAGTTT+TGG | - | chr8.3:19028797-19028816 | None:intergenic | 40.0% |
| ! | GTTTGGTTGGATAGAAGCAT+GGG | + | chr8.3:19028226-19028245 | MS.gene72988:CDS | 40.0% |
| ! | TGCTTTTCATGGTGCTTCTT+TGG | + | chr8.3:19027970-19027989 | MS.gene72988:CDS | 40.0% |
| !! | AAGAAGCACCATGAAAAGCA+CGG | - | chr8.3:19027970-19027989 | None:intergenic | 40.0% |
| !! | GCTAGAATCATTTCTGAGGT+TGG | + | chr8.3:19028729-19028748 | MS.gene72988:intron | 40.0% |
| AAATGGCGCTATTACCATGC+CGG | + | chr8.3:19029365-19029384 | MS.gene72988:CDS | 45.0% | |
| ATTGAGTTCCCATTTCCAGC+TGG | + | chr8.3:19029170-19029189 | MS.gene72988:CDS | 45.0% | |
| CCTTCTCATTTGGGGAAAAG+AGG | + | chr8.3:19028070-19028089 | MS.gene72988:CDS | 45.0% | |
| CCTTCTTCCAAATCTCTTGG+CGG | - | chr8.3:19029234-19029253 | None:intergenic | 45.0% | |
| CGCCAAGAGATTTGGAAGAA+GGG | + | chr8.3:19029232-19029251 | MS.gene72988:CDS | 45.0% | |
| CGTATCTCCAACAAATCTGG+TGG | + | chr8.3:19029129-19029148 | MS.gene72988:CDS | 45.0% | |
| CTTCTTCCAAATCTCTTGGC+GGG | - | chr8.3:19029233-19029252 | None:intergenic | 45.0% | |
| GATTGCACACACACTAAAGG+TGG | + | chr8.3:19029449-19029468 | MS.gene72988:CDS | 45.0% | |
| TGGGGCTAGAATCATTTCTG+AGG | + | chr8.3:19028725-19028744 | MS.gene72988:intron | 45.0% | |
| TGGTAATAGCGCCATTTACC+TGG | - | chr8.3:19029362-19029381 | None:intergenic | 45.0% | |
| ! | ATCTGGTGGTTTGAAGTGGA+CGG | + | chr8.3:19029143-19029162 | MS.gene72988:CDS | 45.0% |
| ! | CCTCTTTTCCCCAAATGAGA+AGG | - | chr8.3:19028073-19028092 | None:intergenic | 45.0% |
| ! | GATTCTAAGAGGTCCAAAGG+TGG | + | chr8.3:19028802-19028821 | MS.gene72988:intron | 45.0% |
| ! | GGCGATTTTGTGGTTGAAGA+TGG | + | chr8.3:19029386-19029405 | MS.gene72988:CDS | 45.0% |
| ! | TCTCTCAACCGTGCTTTTCA+TGG | + | chr8.3:19027959-19027978 | MS.gene72988:CDS | 45.0% |
| CCGCCAAGAGATTTGGAAGA+AGG | + | chr8.3:19029231-19029250 | MS.gene72988:CDS | 50.0% | |
| TAACTTGGCGTCATGATCCC+CGG | - | chr8.3:19028990-19029009 | None:intergenic | 50.0% | |
| ! | TTACCATGCCGGCGATTTTG+TGG | + | chr8.3:19029376-19029395 | MS.gene72988:CDS | 50.0% |
| !!! | GTTGGCGATTTTCGGGTTTG+CGG | + | chr8.3:19028480-19028499 | MS.gene72988:intron | 50.0% |
| AGTTGCGACAGCTAGTACCG+GGG | + | chr8.3:19028970-19028989 | MS.gene72988:intron | 55.0% | |
| CAACCACAAAATCGCCGGCA+TGG | - | chr8.3:19029382-19029401 | None:intergenic | 55.0% | |
| CAGTTGCGACAGCTAGTACC+GGG | + | chr8.3:19028969-19028988 | MS.gene72988:intron | 55.0% | |
| CCAGTTGCGACAGCTAGTAC+CGG | + | chr8.3:19028968-19028987 | MS.gene72988:intron | 55.0% | |
| CGGTACTAGCTGTCGCAACT+GGG | - | chr8.3:19028970-19028989 | None:intergenic | 55.0% | |
| GGGAAACCCGCCAAGAGATT+TGG | + | chr8.3:19029224-19029243 | MS.gene72988:CDS | 55.0% | |
| TGTCGCAACTGGGATCGCAA+TGG | - | chr8.3:19028960-19028979 | None:intergenic | 55.0% | |
| CCGGTACTAGCTGTCGCAAC+TGG | - | chr8.3:19028971-19028990 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 19027830 | 19029544 | 19027830 | ID=MS.gene72988 |
| chr8.3 | mRNA | 19027830 | 19029544 | 19027830 | ID=MS.gene72988.t1;Parent=MS.gene72988 |
| chr8.3 | exon | 19027830 | 19028141 | 19027830 | ID=MS.gene72988.t1.exon1;Parent=MS.gene72988.t1 |
| chr8.3 | CDS | 19027830 | 19028141 | 19027830 | ID=cds.MS.gene72988.t1;Parent=MS.gene72988.t1 |
| chr8.3 | exon | 19028223 | 19028341 | 19028223 | ID=MS.gene72988.t1.exon2;Parent=MS.gene72988.t1 |
| chr8.3 | CDS | 19028223 | 19028341 | 19028223 | ID=cds.MS.gene72988.t1;Parent=MS.gene72988.t1 |
| chr8.3 | exon | 19029115 | 19029544 | 19029115 | ID=MS.gene72988.t1.exon3;Parent=MS.gene72988.t1 |
| chr8.3 | CDS | 19029115 | 19029544 | 19029115 | ID=cds.MS.gene72988.t1;Parent=MS.gene72988.t1 |
| Gene Sequence |
| Protein sequence |
