Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033388.t1 | XP_013457676.1 | 95.1 | 286 | 14 | 0 | 1 | 286 | 1 | 286 | 2.90E-166 | 594.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033388.t1 | Q9LN77 | 68.0 | 269 | 82 | 3 | 16 | 282 | 25 | 291 | 5.6e-110 | 398.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033388.t1 | A0A072UPT1 | 95.1 | 286 | 14 | 0 | 1 | 286 | 1 | 286 | 2.1e-166 | 594.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene49051 | MS.gene033388 | PPI |
| MS.gene054425 | MS.gene033388 | PPI |
| MS.gene41397 | MS.gene033388 | PPI |
| MS.gene007330 | MS.gene033388 | PPI |
| MS.gene34457 | MS.gene033388 | PPI |
| MS.gene050935 | MS.gene033388 | PPI |
| MS.gene40823 | MS.gene033388 | PPI |
| MS.gene22796 | MS.gene033388 | PPI |
| MS.gene007614 | MS.gene033388 | PPI |
| MS.gene006331 | MS.gene033388 | PPI |
| MS.gene020575 | MS.gene033388 | PPI |
| MS.gene072532 | MS.gene033388 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033388.t1 | MTR_4g102770 | 95.105 | 286 | 14 | 0 | 1 | 286 | 1 | 286 | 0.0 | 551 |
| MS.gene033388.t1 | MTR_5g010800 | 74.564 | 287 | 68 | 3 | 1 | 286 | 1 | 283 | 7.32e-160 | 446 |
| MS.gene033388.t1 | MTR_0002s0020 | 60.142 | 281 | 105 | 2 | 1 | 274 | 1 | 281 | 3.25e-125 | 358 |
| MS.gene033388.t1 | MTR_1g101390 | 62.308 | 260 | 97 | 1 | 19 | 278 | 28 | 286 | 2.59e-121 | 349 |
| MS.gene033388.t1 | MTR_0113s0040 | 58.672 | 271 | 110 | 2 | 13 | 282 | 16 | 285 | 1.26e-117 | 339 |
| MS.gene033388.t1 | MTR_7g103380 | 56.014 | 291 | 116 | 2 | 1 | 280 | 1 | 290 | 1.74e-114 | 332 |
| MS.gene033388.t1 | MTR_7g112560 | 26.277 | 274 | 169 | 7 | 22 | 278 | 4 | 261 | 4.80e-29 | 111 |
| MS.gene033388.t1 | MTR_4g023570 | 26.744 | 258 | 166 | 5 | 22 | 277 | 4 | 240 | 2.24e-27 | 106 |
| MS.gene033388.t1 | MTR_1g083580 | 25.862 | 290 | 165 | 9 | 18 | 273 | 7 | 280 | 1.14e-22 | 95.1 |
| MS.gene033388.t1 | MTR_7g112550 | 25.000 | 280 | 183 | 5 | 18 | 273 | 6 | 282 | 1.40e-21 | 92.0 |
| MS.gene033388.t1 | MTR_1g079180 | 35.417 | 144 | 92 | 1 | 21 | 163 | 6 | 149 | 1.51e-21 | 91.7 |
| MS.gene033388.t1 | MTR_1g079460 | 28.090 | 267 | 175 | 6 | 21 | 275 | 6 | 267 | 2.61e-21 | 91.3 |
| MS.gene033388.t1 | MTR_1g079260 | 36.111 | 144 | 88 | 2 | 21 | 163 | 6 | 146 | 3.33e-21 | 90.9 |
| MS.gene033388.t1 | MTR_1g079230 | 35.417 | 144 | 89 | 2 | 21 | 163 | 6 | 146 | 2.36e-20 | 88.6 |
| MS.gene033388.t1 | MTR_1g079370 | 34.247 | 146 | 92 | 2 | 19 | 163 | 4 | 146 | 1.59e-19 | 86.3 |
| MS.gene033388.t1 | MTR_1g079380 | 28.223 | 287 | 174 | 8 | 19 | 286 | 4 | 277 | 1.06e-18 | 84.3 |
| MS.gene033388.t1 | MTR_1g100613 | 36.154 | 130 | 79 | 2 | 36 | 164 | 6 | 132 | 1.12e-18 | 83.6 |
| MS.gene033388.t1 | MTR_1g079140 | 36.054 | 147 | 88 | 3 | 21 | 163 | 15 | 159 | 1.35e-18 | 84.3 |
| MS.gene033388.t1 | MTR_1g100597 | 33.333 | 144 | 92 | 2 | 21 | 163 | 6 | 146 | 4.25e-18 | 82.4 |
| MS.gene033388.t1 | MTR_1g079410 | 32.667 | 150 | 99 | 2 | 16 | 163 | 5 | 154 | 7.32e-18 | 81.6 |
| MS.gene033388.t1 | MTR_1g079200 | 33.562 | 146 | 92 | 3 | 21 | 165 | 6 | 147 | 7.82e-18 | 81.6 |
| MS.gene033388.t1 | MTR_3g452600 | 32.886 | 149 | 90 | 5 | 19 | 164 | 10 | 151 | 2.95e-15 | 74.3 |
| MS.gene033388.t1 | MTR_1g079400 | 31.944 | 144 | 96 | 2 | 22 | 163 | 15 | 158 | 4.33e-15 | 73.9 |
| MS.gene033388.t1 | MTR_1g079850 | 32.653 | 147 | 93 | 3 | 21 | 163 | 6 | 150 | 6.18e-15 | 73.6 |
| MS.gene033388.t1 | MTR_1g079250 | 33.333 | 147 | 91 | 3 | 21 | 163 | 6 | 149 | 7.54e-14 | 70.9 |
| MS.gene033388.t1 | MTR_3g450990 | 32.847 | 137 | 80 | 6 | 19 | 152 | 10 | 137 | 4.81e-12 | 65.5 |
| MS.gene033388.t1 | MTR_1g079350 | 27.805 | 205 | 127 | 5 | 21 | 219 | 6 | 195 | 6.23e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033388.t1 | AT1G12710 | 68.030 | 269 | 82 | 3 | 16 | 282 | 25 | 291 | 9.45e-135 | 383 |
| MS.gene033388.t1 | AT3G61060 | 62.782 | 266 | 97 | 2 | 14 | 278 | 20 | 284 | 9.98e-127 | 362 |
| MS.gene033388.t1 | AT1G12710 | 58.842 | 311 | 82 | 4 | 16 | 282 | 25 | 333 | 7.48e-126 | 362 |
| MS.gene033388.t1 | AT3G61060 | 62.547 | 267 | 97 | 3 | 14 | 278 | 20 | 285 | 5.91e-125 | 358 |
| MS.gene033388.t1 | AT1G63090 | 65.769 | 260 | 86 | 2 | 16 | 274 | 23 | 280 | 1.83e-122 | 352 |
| MS.gene033388.t1 | AT5G52120 | 52.174 | 276 | 127 | 1 | 7 | 277 | 9 | 284 | 9.78e-104 | 304 |
| MS.gene033388.t1 | AT3G53000 | 54.478 | 268 | 109 | 3 | 17 | 273 | 19 | 284 | 5.81e-101 | 297 |
| MS.gene033388.t1 | AT2G02360 | 36.129 | 155 | 85 | 4 | 10 | 161 | 8 | 151 | 1.47e-25 | 102 |
| MS.gene033388.t1 | AT2G02340 | 31.429 | 175 | 113 | 3 | 5 | 176 | 22 | 192 | 2.22e-23 | 97.4 |
| MS.gene033388.t1 | AT2G02230 | 34.266 | 143 | 87 | 2 | 22 | 163 | 35 | 171 | 1.10e-21 | 93.2 |
| MS.gene033388.t1 | AT2G02240 | 34.507 | 142 | 86 | 3 | 22 | 162 | 64 | 199 | 1.12e-20 | 90.5 |
| MS.gene033388.t1 | AT1G09155 | 24.382 | 283 | 185 | 6 | 22 | 277 | 3 | 283 | 1.42e-20 | 89.4 |
| MS.gene033388.t1 | AT5G24560 | 28.276 | 145 | 97 | 2 | 21 | 164 | 5 | 143 | 1.71e-18 | 82.0 |
| MS.gene033388.t1 | AT2G02250 | 27.875 | 287 | 165 | 12 | 17 | 283 | 44 | 308 | 2.97e-18 | 83.6 |
| MS.gene033388.t1 | AT2G02350 | 30.612 | 147 | 90 | 4 | 18 | 160 | 23 | 161 | 6.72e-18 | 82.0 |
| MS.gene033388.t1 | AT1G80110 | 24.151 | 265 | 181 | 8 | 19 | 273 | 1 | 255 | 1.16e-17 | 80.9 |
| MS.gene033388.t1 | AT2G02310 | 25.651 | 269 | 176 | 8 | 21 | 275 | 47 | 305 | 1.20e-17 | 81.6 |
| MS.gene033388.t1 | AT1G56240 | 25.714 | 280 | 177 | 7 | 22 | 273 | 4 | 280 | 3.32e-16 | 77.4 |
| MS.gene033388.t1 | AT1G56250 | 23.891 | 293 | 166 | 6 | 22 | 273 | 4 | 280 | 5.63e-16 | 76.6 |
| MS.gene033388.t1 | AT2G02300 | 25.912 | 274 | 167 | 9 | 18 | 277 | 33 | 284 | 1.17e-14 | 72.8 |
| MS.gene033388.t1 | AT2G02320 | 27.528 | 178 | 115 | 6 | 4 | 176 | 24 | 192 | 2.08e-14 | 72.4 |
Find 61 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAACAGCTACACAGCTTTC+TGG | 0.183101 | 8.4:-22263432 | None:intergenic |
| TTATTCTTCCGAATACATTT+AGG | 0.199539 | 8.4:+22264732 | MS.gene033388:CDS |
| ATCATAATTAGAGGGAAGTT+TGG | 0.273067 | 8.4:-22263547 | None:intergenic |
| GCTAAAGGGTTGTCAATAAC+TGG | 0.296742 | 8.4:+22263804 | MS.gene033388:CDS |
| CTTCAAACCACCAGATTTGT+TGG | 0.309545 | 8.4:-22264665 | None:intergenic |
| AATTCTCCTAAACTTGGTTT+TGG | 0.321554 | 8.4:-22263408 | None:intergenic |
| TATTCTTCCGAATACATTTA+GGG | 0.326850 | 8.4:+22264733 | MS.gene033388:CDS |
| TATTATTATTGTAGAAAGTT+TGG | 0.336627 | 8.4:+22263742 | MS.gene033388:intron |
| GGGAAACCCGCCAAGAGATT+TGG | 0.340849 | 8.4:+22264753 | MS.gene033388:CDS |
| CGGGTTTCCCTAAATGTATT+CGG | 0.356289 | 8.4:-22264740 | None:intergenic |
| AATTATAACATCATAATTAG+AGG | 0.373488 | 8.4:-22263556 | None:intergenic |
| CTATATGTTCCAGCTGGAAA+TGG | 0.373764 | 8.4:-22264708 | None:intergenic |
| TAAAGTGTGTTTGTCTATAT+CGG | 0.379273 | 8.4:+22263782 | MS.gene033388:CDS |
| GTCCATAGTTGGAATCTAAC+AGG | 0.395466 | 8.4:-22264822 | None:intergenic |
| AAGCTGTGTAGCTGTTATAA+TGG | 0.396206 | 8.4:+22263437 | MS.gene033388:CDS |
| TCATCACCAAAACCAAGTTT+AGG | 0.402083 | 8.4:+22263402 | MS.gene033388:CDS |
| TTGCGTATCTCCAACAAATC+TGG | 0.415817 | 8.4:+22264655 | MS.gene033388:CDS |
| AGCCTGTTAGATTCCAACTA+TGG | 0.436078 | 8.4:+22264820 | MS.gene033388:CDS |
| TGGTAATAGCGCCATTTACC+TGG | 0.441087 | 8.4:-22264888 | None:intergenic |
| TGCAACACAGAACATGTTCA+TGG | 0.443142 | 8.4:+22264786 | MS.gene033388:CDS |
| GGATTGATGATCGAAGATAT+TGG | 0.446080 | 8.4:+22263826 | MS.gene033388:CDS |
| CCGCCAAGAGATTTGGAAGA+AGG | 0.447038 | 8.4:+22264760 | MS.gene033388:CDS |
| AGCTGTTATAATGGAATACT+TGG | 0.448318 | 8.4:+22263446 | MS.gene033388:CDS |
| AACCCTTCTTCCAAATCTCT+TGG | 0.453456 | 8.4:-22264763 | None:intergenic |
| CCTTCTCATTTGGGGAAAAG+AGG | 0.454751 | 8.4:+22263606 | MS.gene033388:CDS |
| AGCTTCAATACTTTCGATGA+AGG | 0.456690 | 8.4:+22263648 | MS.gene033388:CDS |
| CCTTCTTCCAAATCTCTTGG+CGG | 0.463503 | 8.4:-22264760 | None:intergenic |
| TCTGGTAATTCTCCTAAACT+TGG | 0.464696 | 8.4:-22263414 | None:intergenic |
| CACAGAACATGTTCATGGTT+GGG | 0.465386 | 8.4:+22264791 | MS.gene033388:CDS |
| CGCCAAGAGATTTGGAAGAA+GGG | 0.472287 | 8.4:+22264761 | MS.gene033388:CDS |
| TGTTTGTCTATATCGGCTAA+AGG | 0.472662 | 8.4:+22263789 | MS.gene033388:CDS |
| CTTCTTCCAAATCTCTTGGC+GGG | 0.472849 | 8.4:-22264759 | None:intergenic |
| TATATGTTCCAGCTGGAAAT+GGG | 0.474195 | 8.4:-22264707 | None:intergenic |
| GTTTGTCTATATCGGCTAAA+GGG | 0.489431 | 8.4:+22263790 | MS.gene033388:CDS |
| CTTCTCATTTGGGGAAAAGA+GGG | 0.492520 | 8.4:+22263607 | MS.gene033388:CDS |
| AGTTTGGTTGGATAGAAGCA+TGG | 0.503977 | 8.4:+22263758 | MS.gene033388:CDS |
| ATTATTGTAGAAAGTTTGGT+TGG | 0.506585 | 8.4:+22263746 | MS.gene033388:intron |
| TCTTACCTTGATTCTTCAGT+GGG | 0.519553 | 8.4:-22263858 | None:intergenic |
| ACACAGAACATGTTCATGGT+TGG | 0.524349 | 8.4:+22264790 | MS.gene033388:CDS |
| GTATCCTAGTGAGTTTAGAA+AGG | 0.524884 | 8.4:+22265025 | MS.gene033388:CDS |
| GATCATCTGAAGTCCATAGT+TGG | 0.529126 | 8.4:-22264833 | None:intergenic |
| AATAAGCTATATGTTCCAGC+TGG | 0.533363 | 8.4:-22264714 | None:intergenic |
| ATTGAGTTCCCATTTCCAGC+TGG | 0.535563 | 8.4:+22264699 | MS.gene033388:CDS |
| GTTTGGTTGGATAGAAGCAT+GGG | 0.542266 | 8.4:+22263759 | MS.gene033388:CDS |
| ATTGATTGCACACACACTAA+AGG | 0.551213 | 8.4:+22264975 | MS.gene033388:CDS |
| ATATTCCCACTGAAGAATCA+AGG | 0.561459 | 8.4:+22263853 | MS.gene033388:CDS |
| TTAACCTTTCTAAACTCACT+AGG | 0.563266 | 8.4:-22265029 | None:intergenic |
| ATCTTACCTTGATTCTTCAG+TGG | 0.563619 | 8.4:-22263859 | None:intergenic |
| ACAAATCTGGTGGTTTGAAG+TGG | 0.565964 | 8.4:+22264668 | MS.gene033388:CDS |
| ATCTTCAACCACAAAATCGC+CGG | 0.570051 | 8.4:-22264913 | None:intergenic |
| CTAAAGGGTTGTCAATAACT+GGG | 0.571485 | 8.4:+22263805 | MS.gene033388:CDS |
| ATTATAACATCATAATTAGA+GGG | 0.581280 | 8.4:-22263555 | None:intergenic |
| CAACCACAAAATCGCCGGCA+TGG | 0.585784 | 8.4:-22264908 | None:intergenic |
| GAAGCTAATTTGCAAATCTG+AGG | 0.595553 | 8.4:-22263474 | None:intergenic |
| CGTATCTCCAACAAATCTGG+TGG | 0.613155 | 8.4:+22264658 | MS.gene033388:CDS |
| GCTAATTTGCAAATCTGAGG+AGG | 0.616624 | 8.4:-22263471 | None:intergenic |
| AAATGGCGCTATTACCATGC+CGG | 0.633820 | 8.4:+22264894 | MS.gene033388:CDS |
| TACTTTCGATGAAGGAACCA+AGG | 0.641635 | 8.4:+22263656 | MS.gene033388:CDS |
| GATTGCACACACACTAAAGG+TGG | 0.653493 | 8.4:+22264978 | MS.gene033388:CDS |
| AAGAAGCACCATGAAAAGCA+CGG | 0.655921 | 8.4:-22263503 | None:intergenic |
| ATCTGGTGGTTTGAAGTGGA+CGG | 0.666571 | 8.4:+22264672 | MS.gene033388:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACTAAAATTAATTAAAAG+AGG | - | chr8.4:22264179-22264198 | None:intergenic | 10.0% |
| !! | AATTATAACATCATAATTAG+AGG | - | chr8.4:22263559-22263578 | None:intergenic | 15.0% |
| !! | ATAATTCAAAAAATCTTTGA+TGG | + | chr8.4:22263573-22263592 | MS.gene033388:CDS | 15.0% |
| !! | ATTATAACATCATAATTAGA+GGG | - | chr8.4:22263558-22263577 | None:intergenic | 15.0% |
| !! | TATTATTATTGTAGAAAGTT+TGG | + | chr8.4:22263742-22263761 | MS.gene033388:intron | 15.0% |
| !!! | TTGAATTGATTTTATTGATT+TGG | + | chr8.4:22264055-22264074 | MS.gene033388:intron | 15.0% |
| !!! | TTGATTTTCTTTTATTATTC+TGG | + | chr8.4:22264452-22264471 | MS.gene033388:intron | 15.0% |
| !! | GAAATTAAAAAGACATAACT+TGG | - | chr8.4:22264534-22264553 | None:intergenic | 20.0% |
| !!! | TTAGTTTGGAAATAAAGTTT+CGG | + | chr8.4:22264589-22264608 | MS.gene033388:intron | 20.0% |
| !!! | TTATAGGTAGAATTGATTTT+GGG | + | chr8.4:22264235-22264254 | MS.gene033388:intron | 20.0% |
| !!! | TTTATGTTAATTTGTTACCT+TGG | - | chr8.4:22263676-22263695 | None:intergenic | 20.0% |
| ! | AAAATTATGCTTGGAGAATT+TGG | + | chr8.4:22264129-22264148 | MS.gene033388:intron | 25.0% |
| ! | ATTATTGTAGAAAGTTTGGT+TGG | + | chr8.4:22263746-22263765 | MS.gene033388:intron | 25.0% |
| ! | GCAAATGATAAAGATAACAT+TGG | - | chr8.4:22264622-22264641 | None:intergenic | 25.0% |
| ! | TAAAGTGTGTTTGTCTATAT+CGG | + | chr8.4:22263782-22263801 | MS.gene033388:CDS | 25.0% |
| ! | TATTCTTCCGAATACATTTA+GGG | + | chr8.4:22264733-22264752 | MS.gene033388:CDS | 25.0% |
| ! | TGTGAATTATGAAGTTCAAA+GGG | + | chr8.4:22263919-22263938 | MS.gene033388:intron | 25.0% |
| ! | TTATTCTTCCGAATACATTT+AGG | + | chr8.4:22264732-22264751 | MS.gene033388:CDS | 25.0% |
| ! | TTTACGGAAAAAATTATGCT+TGG | + | chr8.4:22264120-22264139 | MS.gene033388:intron | 25.0% |
| ! | TTTATGTTTGCATGCATTTA+CGG | + | chr8.4:22264104-22264123 | MS.gene033388:intron | 25.0% |
| !! | CTATTAGTGTTGAATTAGTT+TGG | + | chr8.4:22264575-22264594 | MS.gene033388:intron | 25.0% |
| !! | TTTCATGTTCTAGTGTATTT+TGG | + | chr8.4:22263977-22263996 | MS.gene033388:intron | 25.0% |
| !!! | AAAATCGTTGCTTTTGTATA+TGG | + | chr8.4:22263694-22263713 | MS.gene033388:intron | 25.0% |
| !!! | CTTATAGGTAGAATTGATTT+TGG | + | chr8.4:22264234-22264253 | MS.gene033388:intron | 25.0% |
| !!! | TATAGGTAGAATTGATTTTG+GGG | + | chr8.4:22264236-22264255 | MS.gene033388:intron | 25.0% |
| AAAGCTAAGTATTTGACCTT+TGG | - | chr8.4:22264381-22264400 | None:intergenic | 30.0% | |
| AGCTAGAAATGATAGCTTAT+AGG | + | chr8.4:22264219-22264238 | MS.gene033388:intron | 30.0% | |
| ATCATAATTAGAGGGAAGTT+TGG | - | chr8.4:22263550-22263569 | None:intergenic | 30.0% | |
| GAAGAGAAAGATATTGATGA+AGG | + | chr8.4:22264423-22264442 | MS.gene033388:intron | 30.0% | |
| GACAGCAAATATGTTATGTT+TGG | - | chr8.4:22264287-22264306 | None:intergenic | 30.0% | |
| GTGAATTATGAAGTTCAAAG+GGG | + | chr8.4:22263920-22263939 | MS.gene033388:intron | 30.0% | |
| GTGTGAATTATGAAGTTCAA+AGG | + | chr8.4:22263918-22263937 | MS.gene033388:intron | 30.0% | |
| TTAACCTTTCTAAACTCACT+AGG | - | chr8.4:22265032-22265051 | None:intergenic | 30.0% | |
| ! | AATTCTCCTAAACTTGGTTT+TGG | - | chr8.4:22263411-22263430 | None:intergenic | 30.0% |
| ! | AGCTGTTATAATGGAATACT+TGG | + | chr8.4:22263446-22263465 | MS.gene033388:CDS | 30.0% |
| ! | TAACCAAAACTGATTCTAAG+AGG | + | chr8.4:22264320-22264339 | MS.gene033388:intron | 30.0% |
| ! | TCTTCTTTTCCTTCTCATTT+GGG | + | chr8.4:22263597-22263616 | MS.gene033388:CDS | 30.0% |
| ! | TTCTTCTTTTCCTTCTCATT+TGG | + | chr8.4:22263596-22263615 | MS.gene033388:CDS | 30.0% |
| !! | TTCTTTGGCTGATTTTGTTT+GGG | + | chr8.4:22263521-22263540 | MS.gene033388:CDS | 30.0% |
| !!! | ATCCATTTTTTCCCATGTTT+AGG | + | chr8.4:22264354-22264373 | MS.gene033388:intron | 30.0% |
| !!! | GAAACTAGACTTGCTAATTT+TGG | - | chr8.4:22264556-22264575 | None:intergenic | 30.0% |
| !!! | TCATCGCAATGTTTTTTGAA+AGG | + | chr8.4:22264864-22264883 | MS.gene033388:CDS | 30.0% |
| !!! | TTTTGGTGATGATGATGATT+GGG | - | chr8.4:22263394-22263413 | None:intergenic | 30.0% |
| AAGCTGTGTAGCTGTTATAA+TGG | + | chr8.4:22263437-22263456 | MS.gene033388:CDS | 35.0% | |
| AATAAGCTATATGTTCCAGC+TGG | - | chr8.4:22264717-22264736 | None:intergenic | 35.0% | |
| AGCTTCAATACTTTCGATGA+AGG | + | chr8.4:22263648-22263667 | MS.gene033388:CDS | 35.0% | |
| ATATTCCCACTGAAGAATCA+AGG | + | chr8.4:22263853-22263872 | MS.gene033388:CDS | 35.0% | |
| ATCTTACCTTGATTCTTCAG+TGG | - | chr8.4:22263862-22263881 | None:intergenic | 35.0% | |
| ATTGATTGCACACACACTAA+AGG | + | chr8.4:22264975-22264994 | MS.gene033388:CDS | 35.0% | |
| CTAAAGGGTTGTCAATAACT+GGG | + | chr8.4:22263805-22263824 | MS.gene033388:CDS | 35.0% | |
| GACCTAAACATGGGAAAAAA+TGG | - | chr8.4:22264359-22264378 | None:intergenic | 35.0% | |
| GTATCCTAGTGAGTTTAGAA+AGG | + | chr8.4:22265025-22265044 | MS.gene033388:CDS | 35.0% | |
| TATATGTTCCAGCTGGAAAT+GGG | - | chr8.4:22264710-22264729 | None:intergenic | 35.0% | |
| TCATCACCAAAACCAAGTTT+AGG | + | chr8.4:22263402-22263421 | MS.gene033388:CDS | 35.0% | |
| TCTGGTAATTCTCCTAAACT+TGG | - | chr8.4:22263417-22263436 | None:intergenic | 35.0% | |
| TCTTACCTTGATTCTTCAGT+GGG | - | chr8.4:22263861-22263880 | None:intergenic | 35.0% | |
| ! | AAATTCTGTTGGCGATTTTC+GGG | + | chr8.4:22264006-22264025 | MS.gene033388:intron | 35.0% |
| ! | CTTCTTTTCCTTCTCATTTG+GGG | + | chr8.4:22263598-22263617 | MS.gene033388:CDS | 35.0% |
| ! | GAAATTCTGTTGGCGATTTT+CGG | + | chr8.4:22264005-22264024 | MS.gene033388:intron | 35.0% |
| ! | GAAGCTAATTTGCAAATCTG+AGG | - | chr8.4:22263477-22263496 | None:intergenic | 35.0% |
| ! | GGATTGATGATCGAAGATAT+TGG | + | chr8.4:22263826-22263845 | MS.gene033388:CDS | 35.0% |
| ! | GTTTGTCTATATCGGCTAAA+GGG | + | chr8.4:22263790-22263809 | MS.gene033388:CDS | 35.0% |
| ! | TGTTTGTCTATATCGGCTAA+AGG | + | chr8.4:22263789-22263808 | MS.gene033388:CDS | 35.0% |
| !! | CTTCTTTGGCTGATTTTGTT+TGG | + | chr8.4:22263520-22263539 | MS.gene033388:CDS | 35.0% |
| !! | TTTGGTCTTGGAAATTCTGT+TGG | + | chr8.4:22263995-22264014 | MS.gene033388:intron | 35.0% |
| !! | TTTTGAAAGGTCCAGGTAAA+TGG | + | chr8.4:22264877-22264896 | MS.gene033388:CDS | 35.0% |
| !!! | CAATGTTTTTTGAAAGGTCC+AGG | + | chr8.4:22264870-22264889 | MS.gene033388:CDS | 35.0% |
| !!! | GTTCTAGTGTATTTTGGTCT+TGG | + | chr8.4:22263983-22264002 | MS.gene033388:intron | 35.0% |
| !!! | GTTTTGGTGATGATGATGAT+TGG | - | chr8.4:22263395-22263414 | None:intergenic | 35.0% |
| AACCCTTCTTCCAAATCTCT+TGG | - | chr8.4:22264766-22264785 | None:intergenic | 40.0% | |
| ACAAATCTGGTGGTTTGAAG+TGG | + | chr8.4:22264668-22264687 | MS.gene033388:CDS | 40.0% | |
| ACACAGAACATGTTCATGGT+TGG | + | chr8.4:22264790-22264809 | MS.gene033388:CDS | 40.0% | |
| AGCCTGTTAGATTCCAACTA+TGG | + | chr8.4:22264820-22264839 | MS.gene033388:CDS | 40.0% | |
| AGTTTGGTTGGATAGAAGCA+TGG | + | chr8.4:22263758-22263777 | MS.gene033388:CDS | 40.0% | |
| ATAACAGCTACACAGCTTTC+TGG | - | chr8.4:22263435-22263454 | None:intergenic | 40.0% | |
| ATCTTCAACCACAAAATCGC+CGG | - | chr8.4:22264916-22264935 | None:intergenic | 40.0% | |
| CACAGAACATGTTCATGGTT+GGG | + | chr8.4:22264791-22264810 | MS.gene033388:CDS | 40.0% | |
| CGGGTTTCCCTAAATGTATT+CGG | - | chr8.4:22264743-22264762 | None:intergenic | 40.0% | |
| CTATATGTTCCAGCTGGAAA+TGG | - | chr8.4:22264711-22264730 | None:intergenic | 40.0% | |
| CTTCAAACCACCAGATTTGT+TGG | - | chr8.4:22264668-22264687 | None:intergenic | 40.0% | |
| CTTCTCATTTGGGGAAAAGA+GGG | + | chr8.4:22263607-22263626 | MS.gene033388:CDS | 40.0% | |
| GCTAAAGGGTTGTCAATAAC+TGG | + | chr8.4:22263804-22263823 | MS.gene033388:CDS | 40.0% | |
| GGAAAAAATGGATCCACCTT+TGG | - | chr8.4:22264347-22264366 | None:intergenic | 40.0% | |
| GTCCATAGTTGGAATCTAAC+AGG | - | chr8.4:22264825-22264844 | None:intergenic | 40.0% | |
| TACTTTCGATGAAGGAACCA+AGG | + | chr8.4:22263656-22263675 | MS.gene033388:CDS | 40.0% | |
| TGACCTTTGGACCTAAACAT+GGG | - | chr8.4:22264368-22264387 | None:intergenic | 40.0% | |
| TGCAACACAGAACATGTTCA+TGG | + | chr8.4:22264786-22264805 | MS.gene033388:CDS | 40.0% | |
| TTGACCTTTGGACCTAAACA+TGG | - | chr8.4:22264369-22264388 | None:intergenic | 40.0% | |
| TTGCGTATCTCCAACAAATC+TGG | + | chr8.4:22264655-22264674 | MS.gene033388:CDS | 40.0% | |
| TTTCCCATGTTTAGGTCCAA+AGG | + | chr8.4:22264362-22264381 | MS.gene033388:intron | 40.0% | |
| ! | ACTGATTCTAAGAGGTCCAA+AGG | + | chr8.4:22264328-22264347 | MS.gene033388:intron | 40.0% |
| ! | GATCATCTGAAGTCCATAGT+TGG | - | chr8.4:22264836-22264855 | None:intergenic | 40.0% |
| ! | GCTAATTTGCAAATCTGAGG+AGG | - | chr8.4:22263474-22263493 | None:intergenic | 40.0% |
| ! | GGACCTCTTAGAATCAGTTT+TGG | - | chr8.4:22264326-22264345 | None:intergenic | 40.0% |
| ! | GTTTGGTTGGATAGAAGCAT+GGG | + | chr8.4:22263759-22263778 | MS.gene033388:CDS | 40.0% |
| ! | TGCTTTTCATGGTGCTTCTT+TGG | + | chr8.4:22263506-22263525 | MS.gene033388:CDS | 40.0% |
| !! | AAGAAGCACCATGAAAAGCA+CGG | - | chr8.4:22263506-22263525 | None:intergenic | 40.0% |
| !! | GCTAGAATCATTTCTGAGGT+TGG | + | chr8.4:22264258-22264277 | MS.gene033388:intron | 40.0% |
| AAATGGCGCTATTACCATGC+CGG | + | chr8.4:22264894-22264913 | MS.gene033388:CDS | 45.0% | |
| ATTGAGTTCCCATTTCCAGC+TGG | + | chr8.4:22264699-22264718 | MS.gene033388:CDS | 45.0% | |
| CCTTCTCATTTGGGGAAAAG+AGG | + | chr8.4:22263606-22263625 | MS.gene033388:CDS | 45.0% | |
| CCTTCTTCCAAATCTCTTGG+CGG | - | chr8.4:22264763-22264782 | None:intergenic | 45.0% | |
| CGCCAAGAGATTTGGAAGAA+GGG | + | chr8.4:22264761-22264780 | MS.gene033388:CDS | 45.0% | |
| CGTATCTCCAACAAATCTGG+TGG | + | chr8.4:22264658-22264677 | MS.gene033388:CDS | 45.0% | |
| CTTCTTCCAAATCTCTTGGC+GGG | - | chr8.4:22264762-22264781 | None:intergenic | 45.0% | |
| GATTGCACACACACTAAAGG+TGG | + | chr8.4:22264978-22264997 | MS.gene033388:CDS | 45.0% | |
| TGGGGCTAGAATCATTTCTG+AGG | + | chr8.4:22264254-22264273 | MS.gene033388:intron | 45.0% | |
| TGGTAATAGCGCCATTTACC+TGG | - | chr8.4:22264891-22264910 | None:intergenic | 45.0% | |
| ! | ATCTGGTGGTTTGAAGTGGA+CGG | + | chr8.4:22264672-22264691 | MS.gene033388:CDS | 45.0% |
| ! | CCTCTTTTCCCCAAATGAGA+AGG | - | chr8.4:22263609-22263628 | None:intergenic | 45.0% |
| ! | GATTCTAAGAGGTCCAAAGG+TGG | + | chr8.4:22264331-22264350 | MS.gene033388:intron | 45.0% |
| ! | GGCGATTTTGTGGTTGAAGA+TGG | + | chr8.4:22264915-22264934 | MS.gene033388:CDS | 45.0% |
| ! | TCTCTCAACCGTGCTTTTCA+TGG | + | chr8.4:22263495-22263514 | MS.gene033388:CDS | 45.0% |
| CCGCCAAGAGATTTGGAAGA+AGG | + | chr8.4:22264760-22264779 | MS.gene033388:CDS | 50.0% | |
| TAACTTGGCGTCATGATCCC+CGG | - | chr8.4:22264519-22264538 | None:intergenic | 50.0% | |
| ! | TTACCATGCCGGCGATTTTG+TGG | + | chr8.4:22264905-22264924 | MS.gene033388:CDS | 50.0% |
| !!! | GTTGGCGATTTTCGGGTTTG+CGG | + | chr8.4:22264013-22264032 | MS.gene033388:intron | 50.0% |
| AGTTGCGACAGCTAGTACCG+GGG | + | chr8.4:22264499-22264518 | MS.gene033388:intron | 55.0% | |
| CAACCACAAAATCGCCGGCA+TGG | - | chr8.4:22264911-22264930 | None:intergenic | 55.0% | |
| CAGTTGCGACAGCTAGTACC+GGG | + | chr8.4:22264498-22264517 | MS.gene033388:intron | 55.0% | |
| CCAGTTGCGACAGCTAGTAC+CGG | + | chr8.4:22264497-22264516 | MS.gene033388:intron | 55.0% | |
| CGGTACTAGCTGTCGCAACT+GGG | - | chr8.4:22264499-22264518 | None:intergenic | 55.0% | |
| GGGAAACCCGCCAAGAGATT+TGG | + | chr8.4:22264753-22264772 | MS.gene033388:CDS | 55.0% | |
| TGTCGCAACTGGGATCGCAA+TGG | - | chr8.4:22264489-22264508 | None:intergenic | 55.0% | |
| CCGGTACTAGCTGTCGCAAC+TGG | - | chr8.4:22264500-22264519 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 22263366 | 22265073 | 22263366 | ID=MS.gene033388 |
| chr8.4 | mRNA | 22263366 | 22265073 | 22263366 | ID=MS.gene033388.t1;Parent=MS.gene033388 |
| chr8.4 | exon | 22263366 | 22263677 | 22263366 | ID=MS.gene033388.t1.exon1;Parent=MS.gene033388.t1 |
| chr8.4 | CDS | 22263366 | 22263677 | 22263366 | ID=cds.MS.gene033388.t1;Parent=MS.gene033388.t1 |
| chr8.4 | exon | 22263756 | 22263874 | 22263756 | ID=MS.gene033388.t1.exon2;Parent=MS.gene033388.t1 |
| chr8.4 | CDS | 22263756 | 22263874 | 22263756 | ID=cds.MS.gene033388.t1;Parent=MS.gene033388.t1 |
| chr8.4 | exon | 22264644 | 22265073 | 22264644 | ID=MS.gene033388.t1.exon3;Parent=MS.gene033388.t1 |
| chr8.4 | CDS | 22264644 | 22265073 | 22264644 | ID=cds.MS.gene033388.t1;Parent=MS.gene033388.t1 |
| Gene Sequence |
| Protein sequence |
