Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072814.t1 | AES94102.1 | 97.2 | 286 | 5 | 1 | 1 | 286 | 1 | 283 | 1.60E-164 | 588.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072814.t1 | Q9LN77 | 67.2 | 259 | 83 | 2 | 20 | 277 | 28 | 285 | 1.9e-102 | 373.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072814.t1 | G7KDG7 | 97.2 | 286 | 5 | 1 | 1 | 286 | 1 | 283 | 1.1e-164 | 588.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene054425 | MS.gene072814 | PPI |
MS.gene072814 | MS.gene072532 | PPI |
MS.gene41397 | MS.gene072814 | PPI |
MS.gene007330 | MS.gene072814 | PPI |
MS.gene34457 | MS.gene072814 | PPI |
MS.gene22796 | MS.gene072814 | PPI |
MS.gene40823 | MS.gene072814 | PPI |
MS.gene072814 | MS.gene49051 | PPI |
MS.gene007614 | MS.gene072814 | PPI |
MS.gene072814 | MS.gene050935 | PPI |
MS.gene006331 | MS.gene072814 | PPI |
MS.gene020575 | MS.gene072814 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072814.t1 | MTR_5g010800 | 97.203 | 286 | 5 | 1 | 1 | 286 | 1 | 283 | 0.0 | 577 |
MS.gene072814.t1 | MTR_4g102770 | 76.208 | 269 | 61 | 2 | 20 | 286 | 19 | 286 | 6.67e-158 | 441 |
MS.gene072814.t1 | MTR_0002s0020 | 56.401 | 289 | 117 | 3 | 1 | 281 | 1 | 288 | 5.11e-119 | 343 |
MS.gene072814.t1 | MTR_7g103380 | 56.314 | 293 | 112 | 5 | 1 | 280 | 1 | 290 | 1.17e-112 | 327 |
MS.gene072814.t1 | MTR_1g101390 | 57.308 | 260 | 109 | 2 | 20 | 278 | 28 | 286 | 8.95e-112 | 325 |
MS.gene072814.t1 | MTR_0113s0040 | 55.344 | 262 | 115 | 2 | 16 | 276 | 18 | 278 | 1.87e-110 | 321 |
MS.gene072814.t1 | MTR_7g112560 | 24.453 | 274 | 173 | 8 | 23 | 278 | 4 | 261 | 9.90e-28 | 108 |
MS.gene072814.t1 | MTR_4g023570 | 25.379 | 264 | 161 | 8 | 23 | 277 | 4 | 240 | 4.77e-24 | 97.8 |
MS.gene072814.t1 | MTR_1g079260 | 34.722 | 144 | 91 | 3 | 22 | 164 | 6 | 147 | 5.22e-22 | 93.2 |
MS.gene072814.t1 | MTR_1g079180 | 34.932 | 146 | 91 | 3 | 22 | 164 | 6 | 150 | 2.18e-21 | 91.3 |
MS.gene072814.t1 | MTR_1g079140 | 33.117 | 154 | 96 | 4 | 13 | 161 | 6 | 157 | 6.22e-21 | 90.9 |
MS.gene072814.t1 | MTR_1g079230 | 33.562 | 146 | 90 | 4 | 22 | 164 | 6 | 147 | 5.05e-19 | 85.1 |
MS.gene072814.t1 | MTR_1g079380 | 32.667 | 150 | 94 | 4 | 18 | 164 | 2 | 147 | 1.23e-18 | 84.3 |
MS.gene072814.t1 | MTR_1g079370 | 25.940 | 266 | 184 | 6 | 18 | 273 | 2 | 264 | 2.16e-18 | 83.2 |
MS.gene072814.t1 | MTR_7g112550 | 22.414 | 290 | 185 | 9 | 15 | 273 | 2 | 282 | 2.52e-18 | 83.2 |
MS.gene072814.t1 | MTR_1g079200 | 26.236 | 263 | 178 | 9 | 22 | 273 | 6 | 263 | 3.58e-18 | 82.4 |
MS.gene072814.t1 | MTR_1g079460 | 25.725 | 276 | 169 | 10 | 22 | 275 | 6 | 267 | 1.73e-17 | 80.5 |
MS.gene072814.t1 | MTR_1g100597 | 31.250 | 144 | 96 | 3 | 22 | 164 | 6 | 147 | 2.05e-17 | 80.5 |
MS.gene072814.t1 | MTR_1g079850 | 31.973 | 147 | 95 | 3 | 22 | 164 | 6 | 151 | 4.77e-17 | 79.7 |
MS.gene072814.t1 | MTR_1g083580 | 28.049 | 164 | 112 | 4 | 18 | 176 | 6 | 168 | 5.92e-16 | 76.6 |
MS.gene072814.t1 | MTR_1g079410 | 29.870 | 154 | 97 | 4 | 18 | 164 | 6 | 155 | 1.02e-15 | 75.9 |
MS.gene072814.t1 | MTR_3g452600 | 31.944 | 144 | 91 | 4 | 20 | 161 | 10 | 148 | 1.47e-14 | 72.4 |
MS.gene072814.t1 | MTR_1g079400 | 28.571 | 161 | 102 | 4 | 12 | 164 | 4 | 159 | 4.71e-14 | 71.2 |
MS.gene072814.t1 | MTR_1g100613 | 31.008 | 129 | 86 | 3 | 37 | 164 | 6 | 132 | 5.33e-14 | 70.5 |
MS.gene072814.t1 | MTR_1g079250 | 30.872 | 149 | 93 | 5 | 22 | 164 | 6 | 150 | 1.88e-13 | 69.7 |
MS.gene072814.t1 | MTR_1g079350 | 28.431 | 204 | 120 | 7 | 22 | 216 | 6 | 192 | 8.80e-13 | 67.4 |
MS.gene072814.t1 | MTR_3g450990 | 31.852 | 135 | 83 | 5 | 20 | 152 | 10 | 137 | 6.46e-12 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072814.t1 | AT1G12710 | 67.181 | 259 | 83 | 2 | 20 | 277 | 28 | 285 | 5.95e-128 | 365 |
MS.gene072814.t1 | AT1G12710 | 57.807 | 301 | 83 | 3 | 20 | 277 | 28 | 327 | 6.73e-119 | 344 |
MS.gene072814.t1 | AT3G61060 | 58.242 | 273 | 111 | 3 | 9 | 279 | 14 | 285 | 5.94e-118 | 340 |
MS.gene072814.t1 | AT3G61060 | 58.029 | 274 | 111 | 4 | 9 | 279 | 14 | 286 | 2.10e-116 | 336 |
MS.gene072814.t1 | AT1G63090 | 59.507 | 284 | 107 | 3 | 1 | 277 | 1 | 283 | 1.50e-114 | 332 |
MS.gene072814.t1 | AT3G53000 | 53.333 | 285 | 120 | 3 | 1 | 273 | 1 | 284 | 1.08e-103 | 304 |
MS.gene072814.t1 | AT5G52120 | 48.772 | 285 | 137 | 3 | 1 | 277 | 1 | 284 | 4.95e-98 | 290 |
MS.gene072814.t1 | AT2G02360 | 34.591 | 159 | 94 | 4 | 9 | 164 | 3 | 154 | 8.89e-27 | 105 |
MS.gene072814.t1 | AT2G02230 | 31.792 | 173 | 108 | 6 | 17 | 184 | 29 | 196 | 1.32e-23 | 98.6 |
MS.gene072814.t1 | AT2G02240 | 34.752 | 141 | 86 | 3 | 23 | 162 | 64 | 199 | 1.62e-22 | 95.5 |
MS.gene072814.t1 | AT1G09155 | 24.823 | 282 | 184 | 7 | 23 | 277 | 3 | 283 | 3.86e-22 | 94.0 |
MS.gene072814.t1 | AT2G02340 | 32.927 | 164 | 100 | 5 | 18 | 176 | 34 | 192 | 4.74e-22 | 94.0 |
MS.gene072814.t1 | AT2G02350 | 36.054 | 147 | 83 | 5 | 16 | 158 | 20 | 159 | 9.03e-22 | 92.8 |
MS.gene072814.t1 | AT2G02250 | 30.667 | 150 | 95 | 3 | 15 | 161 | 42 | 185 | 1.71e-21 | 92.4 |
MS.gene072814.t1 | AT2G02320 | 31.285 | 179 | 110 | 6 | 3 | 176 | 22 | 192 | 4.04e-20 | 88.6 |
MS.gene072814.t1 | AT5G24560 | 26.347 | 167 | 112 | 4 | 22 | 187 | 5 | 161 | 1.45e-18 | 82.0 |
MS.gene072814.t1 | AT2G02310 | 31.544 | 149 | 92 | 4 | 18 | 163 | 43 | 184 | 1.66e-18 | 84.0 |
MS.gene072814.t1 | AT1G56250 | 24.232 | 293 | 164 | 8 | 23 | 273 | 4 | 280 | 9.63e-17 | 79.0 |
MS.gene072814.t1 | AT1G56240 | 24.028 | 283 | 185 | 5 | 23 | 277 | 4 | 284 | 2.98e-16 | 77.4 |
MS.gene072814.t1 | AT1G80110 | 24.242 | 264 | 181 | 9 | 20 | 273 | 1 | 255 | 4.96e-16 | 76.3 |
MS.gene072814.t1 | AT2G02300 | 26.891 | 238 | 141 | 10 | 16 | 242 | 30 | 245 | 6.89e-13 | 67.8 |
Find 70 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATGATTTACCAATCAATT+TGG | 0.149392 | 5.3:+4296528 | MS.gene072814:CDS |
TGGTAAATCATGAAAGATTT+TGG | 0.209100 | 5.3:-4296518 | None:intergenic |
ATTGAAGCGACGCAACTTTC+AGG | 0.233304 | 5.3:-4296370 | None:intergenic |
CTTCTTCTGCTGATTTCGTT+TGG | 0.259520 | 5.3:+4296458 | MS.gene072814:CDS |
GGTTCAACCGGTTCAACTTT+AGG | 0.271212 | 5.3:+4296340 | MS.gene072814:CDS |
CTGTATGTCCCGGCTGGAAA+TGG | 0.317696 | 5.3:-4298745 | None:intergenic |
TTCTTCTGCTGATTTCGTTT+GGG | 0.325116 | 5.3:+4296459 | MS.gene072814:CDS |
CACTAAAGGTGGTCTGTGTT+TGG | 0.348141 | 5.3:+4299026 | MS.gene072814:CDS |
CATGATTTACCAATCAATTT+GGG | 0.351067 | 5.3:+4296529 | MS.gene072814:CDS |
AGCCTGTGCGATTCCAACTT+TGG | 0.369551 | 5.3:+4298857 | MS.gene072814:CDS |
CGCTTCAATCATCGGTTACA+TGG | 0.370713 | 5.3:+4296384 | MS.gene072814:CDS |
TTCTGAAAGGAACTGGCAAT+TGG | 0.389942 | 5.3:+4298914 | MS.gene072814:CDS |
TTATTCTTCAGAATACATCT+AGG | 0.422202 | 5.3:+4298769 | MS.gene072814:CDS |
TCCAACCAAACCGGTTCAAC+CGG | 0.434266 | 5.3:+4296328 | MS.gene072814:CDS |
TAAAGTTGAACCGGTTGAAC+CGG | 0.438212 | 5.3:-4296338 | None:intergenic |
ACGACGTCCAAACCTCTTGT+AGG | 0.439552 | 5.3:-4298797 | None:intergenic |
GGGCAAGCCTACAAGAGGTT+TGG | 0.441598 | 5.3:+4298790 | MS.gene072814:CDS |
GAATTGATGATAGAAGATAT+TGG | 0.446914 | 5.3:+4297356 | MS.gene072814:CDS |
CGACTTAATACTATTGATGA+TGG | 0.447327 | 5.3:+4296580 | MS.gene072814:CDS |
TTGAACCGGTTGAACCGGTT+TGG | 0.448850 | 5.3:-4296333 | None:intergenic |
AGTCATAGAGAATTTGACTT+TGG | 0.459733 | 5.3:-4298986 | None:intergenic |
ATATCATCACTGAAGAATCT+AGG | 0.462039 | 5.3:+4297383 | MS.gene072814:CDS |
TGCAGGTGATTTCACGGTTG+AGG | 0.474466 | 5.3:+4298948 | MS.gene072814:CDS |
TTCCAACTTTGGACTTCAGA+TGG | 0.477540 | 5.3:+4298868 | MS.gene072814:CDS |
TAATTCACCTAAAGTTGAAC+CGG | 0.483165 | 5.3:-4296347 | None:intergenic |
TTACCATGCAGGTGATTTCA+CGG | 0.484259 | 5.3:+4298942 | MS.gene072814:CDS |
AGTTGCGTCGCTTCAATCAT+CGG | 0.485599 | 5.3:+4296376 | MS.gene072814:CDS |
TTGCATACCTTCAGCATACC+TGG | 0.490977 | 5.3:+4298692 | MS.gene072814:CDS |
TGTATGTCCCGGCTGGAAAT+GGG | 0.498240 | 5.3:-4298744 | None:intergenic |
TCATTTCGATCCAACCAAAC+CGG | 0.498725 | 5.3:+4296319 | MS.gene072814:CDS |
TGCAACACTGAACATGTTCA+TGG | 0.501094 | 5.3:+4298823 | MS.gene072814:CDS |
CCTGGTGGTTTGAAGTGGAC+GGG | 0.501663 | 5.3:+4298710 | MS.gene072814:CDS |
AACAAGGGACTATCAGTACT+TGG | 0.501726 | 5.3:+4297334 | MS.gene072814:CDS |
GGTGATTTCACGGTTGAGGA+TGG | 0.503816 | 5.3:+4298952 | MS.gene072814:CDS |
CTTGGCTATATCAGCTAACA+AGG | 0.503821 | 5.3:+4297318 | MS.gene072814:CDS |
ACCGGTTGAACCGGTTTGGT+TGG | 0.509700 | 5.3:-4296329 | None:intergenic |
ATTGATTGCACGCACACTAA+AGG | 0.512444 | 5.3:+4299012 | MS.gene072814:CDS |
CACTGAACATGTTCATGGGT+GGG | 0.526344 | 5.3:+4298828 | MS.gene072814:CDS |
CAGTTCCTTTCAGAAAACAC+TGG | 0.526894 | 5.3:-4298906 | None:intergenic |
AGCCACGGGTAAGCTTTGCT+TGG | 0.526934 | 5.3:+4297300 | MS.gene072814:CDS |
GCCCATCTGAAGTCCAAAGT+TGG | 0.536214 | 5.3:-4298870 | None:intergenic |
CCCGTCCACTTCAAACCACC+AGG | 0.538040 | 5.3:-4298710 | None:intergenic |
AATAAGCTGTATGTCCCGGC+TGG | 0.538928 | 5.3:-4298751 | None:intergenic |
TTGACTTCCCATTTCCAGCC+GGG | 0.542798 | 5.3:+4298737 | MS.gene072814:CDS |
TCCAACTTTGGACTTCAGAT+GGG | 0.543088 | 5.3:+4298869 | MS.gene072814:CDS |
GCATACCTGGTGGTTTGAAG+TGG | 0.546087 | 5.3:+4298705 | MS.gene072814:CDS |
AGGAGAAGATGGTAATTTGT+CGG | 0.546308 | 5.3:-4296493 | None:intergenic |
GTGATTTCACGGTTGAGGAT+GGG | 0.546700 | 5.3:+4298953 | MS.gene072814:CDS |
TATTCTTCAGAATACATCTA+GGG | 0.555396 | 5.3:+4298770 | MS.gene072814:CDS |
ACCTGGTGGTTTGAAGTGGA+CGG | 0.561016 | 5.3:+4298709 | MS.gene072814:CDS |
GTTTGGATTGATAGAGCCAC+GGG | 0.568164 | 5.3:+4297286 | MS.gene072814:CDS |
GAAGAATAAGCTGTATGTCC+CGG | 0.575375 | 5.3:-4298755 | None:intergenic |
GTCCAAAGTTGGAATCGCAC+AGG | 0.578305 | 5.3:-4298859 | None:intergenic |
CTGGTGGTTTGAAGTGGACG+GGG | 0.591797 | 5.3:+4298711 | MS.gene072814:CDS |
GTTGACTTCCCATTTCCAGC+CGG | 0.592053 | 5.3:+4298736 | MS.gene072814:CDS |
AGTTCCTTTCAGAAAACACT+GGG | 0.601469 | 5.3:-4298905 | None:intergenic |
AGTTTGGATTGATAGAGCCA+CGG | 0.603796 | 5.3:+4297285 | MS.gene072814:CDS |
GATTGCACGCACACTAAAGG+TGG | 0.628473 | 5.3:+4299015 | MS.gene072814:CDS |
GCAACACTGAACATGTTCAT+GGG | 0.629375 | 5.3:+4298824 | MS.gene072814:CDS |
ATCTAGGGCAAGCCTACAAG+AGG | 0.631041 | 5.3:+4298785 | MS.gene072814:CDS |
CAACCGTGAAATCACCTGCA+TGG | 0.636855 | 5.3:-4298945 | None:intergenic |
TACTATTGATGATGGCACCA+AGG | 0.640156 | 5.3:+4296588 | MS.gene072814:CDS |
GCAAGTTGACAGATCTGAGG+AGG | 0.643594 | 5.3:-4296409 | None:intergenic |
ACACTGAACATGTTCATGGG+TGG | 0.656933 | 5.3:+4298827 | MS.gene072814:CDS |
CATACCTTCAGCATACCTGG+TGG | 0.660309 | 5.3:+4298695 | MS.gene072814:CDS |
CAAACCACCAGGTATGCTGA+AGG | 0.668408 | 5.3:-4298699 | None:intergenic |
TCCTTTCAGAAAACACTGGG+AGG | 0.675908 | 5.3:-4298902 | None:intergenic |
AGCCAAGCAAAGCTTACCCG+TGG | 0.675980 | 5.3:-4297302 | None:intergenic |
GTTGCAAGTTGACAGATCTG+AGG | 0.684069 | 5.3:-4296412 | None:intergenic |
TTGGCTATATCAGCTAACAA+GGG | 0.728498 | 5.3:+4297319 | MS.gene072814:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACATTATAATCTATTTAATA+GGG | + | chr5.3:4298229-4298248 | MS.gene072814:intron | 10.0% |
!!! | AAAAATTAATTTTGAATGAT+TGG | + | chr5.3:4296781-4296800 | MS.gene072814:intron | 10.0% |
!!! | TTATTATAAATCTATTTTAG+TGG | + | chr5.3:4298626-4298645 | MS.gene072814:intron | 10.0% |
!!! | TTTATCTTTTTCTATAAAAT+TGG | + | chr5.3:4297126-4297145 | MS.gene072814:intron | 10.0% |
!! | CACATTATAATCTATTTAAT+AGG | + | chr5.3:4298228-4298247 | MS.gene072814:intron | 15.0% |
!!! | AGTTATGATATGATATTTTT+GGG | + | chr5.3:4297838-4297857 | MS.gene072814:intron | 15.0% |
!!! | GTATTACATAATTTTCATTA+AGG | + | chr5.3:4298023-4298042 | MS.gene072814:intron | 15.0% |
!!! | TTTTCATTAAGGAATATAAT+TGG | + | chr5.3:4298034-4298053 | MS.gene072814:intron | 15.0% |
!! | AGAAAATCAATATGACTATT+TGG | - | chr5.3:4298255-4298274 | None:intergenic | 20.0% |
!! | TTACATAGATAAATCTTTGT+CGG | + | chr5.3:4298473-4298492 | MS.gene072814:intron | 20.0% |
!!! | ATTGTATTTTCTAGAATAGA+TGG | + | chr5.3:4297481-4297500 | MS.gene072814:intron | 20.0% |
!!! | GAGTTATGATATGATATTTT+TGG | + | chr5.3:4297837-4297856 | MS.gene072814:intron | 20.0% |
!!! | GATATTTATTGTTTTTATCG+AGG | - | chr5.3:4298209-4298228 | None:intergenic | 20.0% |
!!! | GGATTGTCTTAATTTTTTTT+TGG | + | chr5.3:4297502-4297521 | MS.gene072814:intron | 20.0% |
!!! | TTATTTTAGATGATTTAGAC+TGG | + | chr5.3:4297917-4297936 | MS.gene072814:intron | 20.0% |
!!! | TTTTATAAGTTCTCCAATAT+AGG | + | chr5.3:4297058-4297077 | MS.gene072814:intron | 20.0% |
! | AAATGTATGTGTGCTTATTT+CGG | + | chr5.3:4296731-4296750 | MS.gene072814:intron | 25.0% |
! | AACCATTAGAAAAGATTTAG+AGG | + | chr5.3:4297621-4297640 | MS.gene072814:intron | 25.0% |
! | AATCAATAAAGTAATCACCT+TGG | - | chr5.3:4296608-4296627 | None:intergenic | 25.0% |
! | AATCTAGAAAACTATGTTTG+TGG | - | chr5.3:4297995-4298014 | None:intergenic | 25.0% |
! | ATCTAGAAAACTATGTTTGT+GGG | - | chr5.3:4297994-4298013 | None:intergenic | 25.0% |
! | CATGATTTACCAATCAATTT+GGG | + | chr5.3:4296529-4296548 | MS.gene072814:CDS | 25.0% |
! | GTTCTATCAAATACCATATT+TGG | - | chr5.3:4297661-4297680 | None:intergenic | 25.0% |
! | TATTCTTCAGAATACATCTA+GGG | + | chr5.3:4298770-4298789 | MS.gene072814:CDS | 25.0% |
! | TATTTGATAGAACATTATGG+CGG | + | chr5.3:4297668-4297687 | MS.gene072814:intron | 25.0% |
! | TCATGATTTACCAATCAATT+TGG | + | chr5.3:4296528-4296547 | MS.gene072814:CDS | 25.0% |
! | TGGTATTTGATAGAACATTA+TGG | + | chr5.3:4297665-4297684 | MS.gene072814:intron | 25.0% |
! | TTATTCTTCAGAATACATCT+AGG | + | chr5.3:4298769-4298788 | MS.gene072814:CDS | 25.0% |
!! | CAAACATAGTTTTCTAGATT+TGG | + | chr5.3:4297995-4298014 | MS.gene072814:intron | 25.0% |
!! | GAATTGATGATAGAAGATAT+TGG | + | chr5.3:4297356-4297375 | MS.gene072814:CDS | 25.0% |
!! | GAGTTTAAAATCAATTCTAG+AGG | + | chr5.3:4296837-4296856 | MS.gene072814:intron | 25.0% |
!! | TGGTAAATCATGAAAGATTT+TGG | - | chr5.3:4296521-4296540 | None:intergenic | 25.0% |
!! | TTTTCTAATGGTTTCTCTAA+TGG | - | chr5.3:4297614-4297633 | None:intergenic | 25.0% |
!!! | AGCTGTTTTATAACCTATAT+TGG | - | chr5.3:4297074-4297093 | None:intergenic | 25.0% |
!!! | ATAAGTTTTGTGAAACTGTT+TGG | + | chr5.3:4297006-4297025 | MS.gene072814:intron | 25.0% |
!!! | CGAGGTTTTTTTTTCAATTT+AGG | - | chr5.3:4298191-4298210 | None:intergenic | 25.0% |
!!! | GATTTTCTGCATCTTTTTTA+TGG | + | chr5.3:4298267-4298286 | MS.gene072814:intron | 25.0% |
!!! | TAAGTTTTGTGAAACTGTTT+GGG | + | chr5.3:4297007-4297026 | MS.gene072814:intron | 25.0% |
!!! | TGATTAGTTTAATGATGAGA+GGG | + | chr5.3:4297768-4297787 | MS.gene072814:intron | 25.0% |
!!! | TTGATTAGTTTAAAAGAGTC+AGG | + | chr5.3:4297558-4297577 | MS.gene072814:intron | 25.0% |
!!! | TTGATTAGTTTAATGATGAG+AGG | + | chr5.3:4297767-4297786 | MS.gene072814:intron | 25.0% |
ATATCATCACTGAAGAATCT+AGG | + | chr5.3:4297383-4297402 | MS.gene072814:CDS | 30.0% | |
ATCATCAACTGCGAAAATTA+AGG | - | chr5.3:4298567-4298586 | None:intergenic | 30.0% | |
ATCCATTTCGCGAAAAATTT+AGG | - | chr5.3:4296662-4296681 | None:intergenic | 30.0% | |
CGACTTAATACTATTGATGA+TGG | + | chr5.3:4296580-4296599 | MS.gene072814:CDS | 30.0% | |
GTGAAAATTGGTAAAGTGAT+AGG | + | chr5.3:4298347-4298366 | MS.gene072814:intron | 30.0% | |
TAAAAGAGTCAGGTTAAAAG+AGG | + | chr5.3:4297568-4297587 | MS.gene072814:intron | 30.0% | |
TAATTCACCTAAAGTTGAAC+CGG | - | chr5.3:4296350-4296369 | None:intergenic | 30.0% | |
TCCATTTCGCGAAAAATTTA+GGG | - | chr5.3:4296661-4296680 | None:intergenic | 30.0% | |
TCTAGAAAACTATGTTTGTG+GGG | - | chr5.3:4297993-4298012 | None:intergenic | 30.0% | |
TGGAATCAAACATACACTTA+AGG | + | chr5.3:4296946-4296965 | MS.gene072814:intron | 30.0% | |
! | AGTCATAGAGAATTTGACTT+TGG | - | chr5.3:4298989-4299008 | None:intergenic | 30.0% |
! | GACCTCTAAATCTTTTCTAA+TGG | - | chr5.3:4297626-4297645 | None:intergenic | 30.0% |
! | GTTTCTCTAATGGTTTTCTT+AGG | - | chr5.3:4297604-4297623 | None:intergenic | 30.0% |
! | TCTCTTTTACCCAAATTGAT+TGG | - | chr5.3:4296541-4296560 | None:intergenic | 30.0% |
! | TGTATGTTTGATTCCACTTT+TGG | - | chr5.3:4296942-4296961 | None:intergenic | 30.0% |
!! | GATTAGTTTAATGATGAGAG+GGG | + | chr5.3:4297769-4297788 | MS.gene072814:intron | 30.0% |
!!! | AATCTATTTTAGTGGTGCTT+TGG | + | chr5.3:4298634-4298653 | MS.gene072814:intron | 30.0% |
!!! | TTTTTTGTGTGCAGAAAGTT+TGG | + | chr5.3:4297269-4297288 | MS.gene072814:intron | 30.0% |
AACAGAATTGATCACAATGC+AGG | - | chr5.3:4297450-4297469 | None:intergenic | 35.0% | |
AACCTGTAACCACATGTTTA+AGG | - | chr5.3:4298117-4298136 | None:intergenic | 35.0% | |
ACATGTGTTAGTCCAAGTAT+GGG | + | chr5.3:4298082-4298101 | MS.gene072814:intron | 35.0% | |
ACCTGTAACCACATGTTTAA+GGG | - | chr5.3:4298116-4298135 | None:intergenic | 35.0% | |
AGATTTAGAGGTCAATGAGT+TGG | + | chr5.3:4297633-4297652 | MS.gene072814:intron | 35.0% | |
AGCAAGCATATTTACCAATG+TGG | - | chr5.3:4298541-4298560 | None:intergenic | 35.0% | |
AGTTCCTTTCAGAAAACACT+GGG | - | chr5.3:4298908-4298927 | None:intergenic | 35.0% | |
ATTTCGGTTTAGCGTATGTT+TGG | + | chr5.3:4296747-4296766 | MS.gene072814:intron | 35.0% | |
GACTAACACATGTGGATATT+TGG | - | chr5.3:4298075-4298094 | None:intergenic | 35.0% | |
GACTGGAATACATTCAAGTA+AGG | + | chr5.3:4297934-4297953 | MS.gene072814:intron | 35.0% | |
GATAGGACATCGTTTGAAAA+CGG | + | chr5.3:4298364-4298383 | MS.gene072814:intron | 35.0% | |
TTGGCTATATCAGCTAACAA+GGG | + | chr5.3:4297319-4297338 | MS.gene072814:CDS | 35.0% | |
! | AATTGGACTTTTTACCATGC+AGG | + | chr5.3:4298931-4298950 | MS.gene072814:CDS | 35.0% |
! | ACCCTAAATTTTTCGCGAAA+TGG | + | chr5.3:4296657-4296676 | MS.gene072814:intron | 35.0% |
! | AGGAGAAGATGGTAATTTGT+CGG | - | chr5.3:4296496-4296515 | None:intergenic | 35.0% |
! | CAATGAGTTGGATCCAAATA+TGG | + | chr5.3:4297645-4297664 | MS.gene072814:intron | 35.0% |
! | GGAGCAAAAATCGATTCTAA+AGG | - | chr5.3:4296918-4296937 | None:intergenic | 35.0% |
! | TGCTCTTTTTGAATTCGCTT+GGG | - | chr5.3:4299068-4299087 | None:intergenic | 35.0% |
! | TTGCTCTTTTTGAATTCGCT+TGG | - | chr5.3:4299069-4299088 | None:intergenic | 35.0% |
! | TTGTTTGAGTTCAACCACAT+TGG | + | chr5.3:4298524-4298543 | MS.gene072814:intron | 35.0% |
!! | AAGGTAATGGAGAGAACTAA+GGG | + | chr5.3:4297792-4297811 | MS.gene072814:intron | 35.0% |
!! | AATCATGAAAGATTTTGGCG+AGG | - | chr5.3:4296516-4296535 | None:intergenic | 35.0% |
!! | ATGTTTGATTCCACTTTTGG+AGG | - | chr5.3:4296939-4296958 | None:intergenic | 35.0% |
!! | CACTTGATGATGGTGAAAAT+TGG | + | chr5.3:4298335-4298354 | MS.gene072814:intron | 35.0% |
!! | TTCTTCTGCTGATTTCGTTT+GGG | + | chr5.3:4296459-4296478 | MS.gene072814:CDS | 35.0% |
AACAAGGGACTATCAGTACT+TGG | + | chr5.3:4297334-4297353 | MS.gene072814:CDS | 40.0% | |
AACCACATGTTTAAGGGACA+CGG | - | chr5.3:4298110-4298129 | None:intergenic | 40.0% | |
ACAGGTTCAATTCATACCCA+GGG | + | chr5.3:4298130-4298149 | MS.gene072814:intron | 40.0% | |
ACATACACTTAAGGCCAGTT+TGG | + | chr5.3:4296955-4296974 | MS.gene072814:intron | 40.0% | |
AGTCAGGTTAAAAGAGGTAG+AGG | + | chr5.3:4297574-4297593 | MS.gene072814:intron | 40.0% | |
AGTTTAATGATGAGAGGGGA+AGG | + | chr5.3:4297773-4297792 | MS.gene072814:intron | 40.0% | |
AGTTTGGATTGATAGAGCCA+CGG | + | chr5.3:4297285-4297304 | MS.gene072814:CDS | 40.0% | |
ATGTGTTAGTCCAAGTATGG+GGG | + | chr5.3:4298084-4298103 | MS.gene072814:intron | 40.0% | |
ATTGATTGCACGCACACTAA+AGG | + | chr5.3:4299012-4299031 | MS.gene072814:CDS | 40.0% | |
CACATGTGTTAGTCCAAGTA+TGG | + | chr5.3:4298081-4298100 | MS.gene072814:intron | 40.0% | |
CAGTTCCTTTCAGAAAACAC+TGG | - | chr5.3:4298909-4298928 | None:intergenic | 40.0% | |
CATACTTGGACTAACACATG+TGG | - | chr5.3:4298083-4298102 | None:intergenic | 40.0% | |
CATGTGTTAGTCCAAGTATG+GGG | + | chr5.3:4298083-4298102 | MS.gene072814:intron | 40.0% | |
CTTGGCTATATCAGCTAACA+AGG | + | chr5.3:4297318-4297337 | MS.gene072814:CDS | 40.0% | |
CTTTGTCGGTACTATTGTGA+AGG | + | chr5.3:4298487-4298506 | MS.gene072814:intron | 40.0% | |
GAAGAATAAGCTGTATGTCC+CGG | - | chr5.3:4298758-4298777 | None:intergenic | 40.0% | |
GATAAGCTGTTTGTCCAAAC+AGG | + | chr5.3:4297207-4297226 | MS.gene072814:intron | 40.0% | |
GCAACACTGAACATGTTCAT+GGG | + | chr5.3:4298824-4298843 | MS.gene072814:CDS | 40.0% | |
GTTTGTCCAAACAGGCTTAT+TGG | + | chr5.3:4297215-4297234 | MS.gene072814:intron | 40.0% | |
TAAAGTTGAACCGGTTGAAC+CGG | - | chr5.3:4296341-4296360 | None:intergenic | 40.0% | |
TAATGGAGAGAACTAAGGGA+GGG | + | chr5.3:4297796-4297815 | MS.gene072814:intron | 40.0% | |
TACAGGTTCAATTCATACCC+AGG | + | chr5.3:4298129-4298148 | MS.gene072814:intron | 40.0% | |
TCAAACAAGCCAATCCAAAC+TGG | - | chr5.3:4296972-4296991 | None:intergenic | 40.0% | |
TCATTTCGATCCAACCAAAC+CGG | + | chr5.3:4296319-4296338 | MS.gene072814:CDS | 40.0% | |
TCCAACTTTGGACTTCAGAT+GGG | + | chr5.3:4298869-4298888 | MS.gene072814:CDS | 40.0% | |
TCCCTTAAACATGTGGTTAC+AGG | + | chr5.3:4298112-4298131 | MS.gene072814:intron | 40.0% | |
TGCAACACTGAACATGTTCA+TGG | + | chr5.3:4298823-4298842 | MS.gene072814:CDS | 40.0% | |
TTACCATGCAGGTGATTTCA+CGG | + | chr5.3:4298942-4298961 | MS.gene072814:CDS | 40.0% | |
TTCCAACTTTGGACTTCAGA+TGG | + | chr5.3:4298868-4298887 | MS.gene072814:CDS | 40.0% | |
! | AAACAGGCTTATTGGCTGAT+GGG | + | chr5.3:4297223-4297242 | MS.gene072814:intron | 40.0% |
! | ATTCTTCCATCGACTAGTCA+AGG | - | chr5.3:4298165-4298184 | None:intergenic | 40.0% |
! | GATTTTTGCTCCTCCAAAAG+TGG | + | chr5.3:4296926-4296945 | MS.gene072814:intron | 40.0% |
! | TTCTGAAAGGAACTGGCAAT+TGG | + | chr5.3:4298914-4298933 | MS.gene072814:CDS | 40.0% |
! | TTCTTCCATCGACTAGTCAA+GGG | - | chr5.3:4298164-4298183 | None:intergenic | 40.0% |
!! | CAGTGTTTTCTGAAAGGAAC+TGG | + | chr5.3:4298907-4298926 | MS.gene072814:CDS | 40.0% |
!! | CTTCTTCTGCTGATTTCGTT+TGG | + | chr5.3:4296458-4296477 | MS.gene072814:CDS | 40.0% |
!! | GAAGGTAATGGAGAGAACTA+AGG | + | chr5.3:4297791-4297810 | MS.gene072814:intron | 40.0% |
!! | TACTATTGATGATGGCACCA+AGG | + | chr5.3:4296588-4296607 | MS.gene072814:CDS | 40.0% |
AATGGAGAGAACTAAGGGAG+GGG | + | chr5.3:4297797-4297816 | MS.gene072814:intron | 45.0% | |
ACACTGAACATGTTCATGGG+TGG | + | chr5.3:4298827-4298846 | MS.gene072814:CDS | 45.0% | |
AGTCAAGGGATCAATTACCC+TGG | - | chr5.3:4298150-4298169 | None:intergenic | 45.0% | |
AGTTGCGTCGCTTCAATCAT+CGG | + | chr5.3:4296376-4296395 | MS.gene072814:CDS | 45.0% | |
ATCATCAAGTGCGCGAGAAT+AGG | - | chr5.3:4298326-4298345 | None:intergenic | 45.0% | |
ATGATGAGAGGGGAAGGTAA+TGG | + | chr5.3:4297779-4297798 | MS.gene072814:intron | 45.0% | |
ATTACGCTTCTCTGCTACTG+AGG | + | chr5.3:4298429-4298448 | MS.gene072814:intron | 45.0% | |
ATTGAAGCGACGCAACTTTC+AGG | - | chr5.3:4296373-4296392 | None:intergenic | 45.0% | |
CACTAAAGGTGGTCTGTGTT+TGG | + | chr5.3:4299026-4299045 | MS.gene072814:CDS | 45.0% | |
CACTGAACATGTTCATGGGT+GGG | + | chr5.3:4298828-4298847 | MS.gene072814:CDS | 45.0% | |
CACTTAAGGCCAGTTTGGAT+TGG | + | chr5.3:4296960-4296979 | MS.gene072814:intron | 45.0% | |
CATCAGCCAATAAGCCTGTT+TGG | - | chr5.3:4297224-4297243 | None:intergenic | 45.0% | |
GTCAAGGGATCAATTACCCT+GGG | - | chr5.3:4298149-4298168 | None:intergenic | 45.0% | |
GTGATTTCACGGTTGAGGAT+GGG | + | chr5.3:4298953-4298972 | MS.gene072814:CDS | 45.0% | |
GTTTGGATTGATAGAGCCAC+GGG | + | chr5.3:4297286-4297305 | MS.gene072814:CDS | 45.0% | |
TATTCTCGCGCACTTGATGA+TGG | + | chr5.3:4298325-4298344 | MS.gene072814:intron | 45.0% | |
TCCTTTCAGAAAACACTGGG+AGG | - | chr5.3:4298905-4298924 | None:intergenic | 45.0% | |
TTGCATACCTTCAGCATACC+TGG | + | chr5.3:4298692-4298711 | MS.gene072814:CDS | 45.0% | |
! | AAGCCTTATCCCACTAAGTG+GGG | - | chr5.3:4297714-4297733 | None:intergenic | 45.0% |
! | CAAACAGGCTTATTGGCTGA+TGG | + | chr5.3:4297222-4297241 | MS.gene072814:intron | 45.0% |
! | CAAGCCTTATCCCACTAAGT+GGG | - | chr5.3:4297715-4297734 | None:intergenic | 45.0% |
! | CGCTTCAATCATCGGTTACA+TGG | + | chr5.3:4296384-4296403 | MS.gene072814:CDS | 45.0% |
! | GGTTCAACCGGTTCAACTTT+AGG | + | chr5.3:4296340-4296359 | MS.gene072814:CDS | 45.0% |
! | GTAATGGAGAGAACTAAGGG+AGG | + | chr5.3:4297795-4297814 | MS.gene072814:intron | 45.0% |
! | GTTGCAAGTTGACAGATCTG+AGG | - | chr5.3:4296415-4296434 | None:intergenic | 45.0% |
! | TTGATCCCTTGACTAGTCGA+TGG | + | chr5.3:4298156-4298175 | MS.gene072814:intron | 45.0% |
!! | AGATTTTGGCGAGGAGAAGA+TGG | - | chr5.3:4296507-4296526 | None:intergenic | 45.0% |
!! | GGCTGATGGGTTTGGATATA+TGG | + | chr5.3:4297236-4297255 | MS.gene072814:intron | 45.0% |
AATAAGCTGTATGTCCCGGC+TGG | - | chr5.3:4298754-4298773 | None:intergenic | 50.0% | |
ACGACGTCCAAACCTCTTGT+AGG | - | chr5.3:4298800-4298819 | None:intergenic | 50.0% | |
AGCCTGTGCGATTCCAACTT+TGG | + | chr5.3:4298857-4298876 | MS.gene072814:CDS | 50.0% | |
ATGGAGAGAACTAAGGGAGG+GGG | + | chr5.3:4297798-4297817 | MS.gene072814:intron | 50.0% | |
CAAACCACCAGGTATGCTGA+AGG | - | chr5.3:4298702-4298721 | None:intergenic | 50.0% | |
CAACCGTGAAATCACCTGCA+TGG | - | chr5.3:4298948-4298967 | None:intergenic | 50.0% | |
CATACCTTCAGCATACCTGG+TGG | + | chr5.3:4298695-4298714 | MS.gene072814:CDS | 50.0% | |
CCACTTAGTGGGATAAGGCT+TGG | + | chr5.3:4297713-4297732 | MS.gene072814:intron | 50.0% | |
CTTATCCCACTAAGTGGGGT+CGG | - | chr5.3:4297710-4297729 | None:intergenic | 50.0% | |
GATTGCACGCACACTAAAGG+TGG | + | chr5.3:4299015-4299034 | MS.gene072814:CDS | 50.0% | |
GCATACCTGGTGGTTTGAAG+TGG | + | chr5.3:4298705-4298724 | MS.gene072814:CDS | 50.0% | |
GGTGATTTCACGGTTGAGGA+TGG | + | chr5.3:4298952-4298971 | MS.gene072814:CDS | 50.0% | |
GTCCAAAGTTGGAATCGCAC+AGG | - | chr5.3:4298862-4298881 | None:intergenic | 50.0% | |
TGCAGGTGATTTCACGGTTG+AGG | + | chr5.3:4298948-4298967 | MS.gene072814:CDS | 50.0% | |
TGTATGTCCCGGCTGGAAAT+GGG | - | chr5.3:4298747-4298766 | None:intergenic | 50.0% | |
TTGAACCGGTTGAACCGGTT+TGG | - | chr5.3:4296336-4296355 | None:intergenic | 50.0% | |
TTGACTTCCCATTTCCAGCC+GGG | + | chr5.3:4298737-4298756 | MS.gene072814:CDS | 50.0% | |
! | ACCTGGTGGTTTGAAGTGGA+CGG | + | chr5.3:4298709-4298728 | MS.gene072814:CDS | 50.0% |
! | ATCTAGGGCAAGCCTACAAG+AGG | + | chr5.3:4298785-4298804 | MS.gene072814:CDS | 50.0% |
! | CCAAGCCTTATCCCACTAAG+TGG | - | chr5.3:4297716-4297735 | None:intergenic | 50.0% |
! | GCAAGTTGACAGATCTGAGG+AGG | - | chr5.3:4296412-4296431 | None:intergenic | 50.0% |
! | GCCCATCTGAAGTCCAAAGT+TGG | - | chr5.3:4298873-4298892 | None:intergenic | 50.0% |
! | GCCTCCCAGTGTTTTCTGAA+AGG | + | chr5.3:4298901-4298920 | MS.gene072814:CDS | 50.0% |
! | GTTGACTTCCCATTTCCAGC+CGG | + | chr5.3:4298736-4298755 | MS.gene072814:CDS | 50.0% |
! | TCCAACCAAACCGGTTCAAC+CGG | + | chr5.3:4296328-4296347 | MS.gene072814:CDS | 50.0% |
!! | GGCTTATTGGCTGATGGGTT+TGG | + | chr5.3:4297228-4297247 | MS.gene072814:intron | 50.0% |
ACTAAGTGGGGTCGGCTACA+TGG | - | chr5.3:4297702-4297721 | None:intergenic | 55.0% | |
AGAGAACTAAGGGAGGGGGA+AGG | + | chr5.3:4297802-4297821 | MS.gene072814:intron | 55.0% | |
AGCCAAGCAAAGCTTACCCG+TGG | - | chr5.3:4297305-4297324 | None:intergenic | 55.0% | |
AGCCACGGGTAAGCTTTGCT+TGG | + | chr5.3:4297300-4297319 | MS.gene072814:CDS | 55.0% | |
ATGTAGCCGACCCCACTTAG+TGG | + | chr5.3:4297701-4297720 | MS.gene072814:intron | 55.0% | |
CGACCCCACTTAGTGGGATA+AGG | + | chr5.3:4297708-4297727 | MS.gene072814:intron | 55.0% | |
CTGTATGTCCCGGCTGGAAA+TGG | - | chr5.3:4298748-4298767 | None:intergenic | 55.0% | |
GCTTCTCTGCTACTGAGGCA+CGG | + | chr5.3:4298434-4298453 | MS.gene072814:intron | 55.0% | |
GGCCGTGTCCCTTAAACATG+TGG | + | chr5.3:4298105-4298124 | MS.gene072814:intron | 55.0% | |
GGGCAAGCCTACAAGAGGTT+TGG | + | chr5.3:4298790-4298809 | MS.gene072814:CDS | 55.0% | |
TGTAGCCGACCCCACTTAGT+GGG | + | chr5.3:4297702-4297721 | MS.gene072814:intron | 55.0% | |
! | CCTGGTGGTTTGAAGTGGAC+GGG | + | chr5.3:4298710-4298729 | MS.gene072814:CDS | 55.0% |
! | CTGGTGGTTTGAAGTGGACG+GGG | + | chr5.3:4298711-4298730 | MS.gene072814:CDS | 55.0% |
!! | ACCGGTTGAACCGGTTTGGT+TGG | - | chr5.3:4296332-4296351 | None:intergenic | 55.0% |
AAGGGAGGGGGAAGGAATCG+AGG | + | chr5.3:4297810-4297829 | MS.gene072814:intron | 60.0% | |
AGGGAGGGGGAAGGAATCGA+GGG | + | chr5.3:4297811-4297830 | MS.gene072814:intron | 60.0% | |
AGGGGGAAGGAATCGAGGGA+TGG | + | chr5.3:4297815-4297834 | MS.gene072814:intron | 60.0% | |
CCCGTCCACTTCAAACCACC+AGG | - | chr5.3:4298713-4298732 | None:intergenic | 60.0% | |
AGGGACACGGCCCCCATACT+TGG | - | chr5.3:4298097-4298116 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 4296301 | 4299110 | 4296301 | ID=MS.gene072814 |
chr5.3 | mRNA | 4296301 | 4299110 | 4296301 | ID=MS.gene072814.t1;Parent=MS.gene072814 |
chr5.3 | exon | 4296301 | 4296609 | 4296301 | ID=MS.gene072814.t1.exon1;Parent=MS.gene072814.t1 |
chr5.3 | CDS | 4296301 | 4296609 | 4296301 | ID=cds.MS.gene072814.t1;Parent=MS.gene072814.t1 |
chr5.3 | exon | 4297283 | 4297404 | 4297283 | ID=MS.gene072814.t1.exon2;Parent=MS.gene072814.t1 |
chr5.3 | CDS | 4297283 | 4297404 | 4297283 | ID=cds.MS.gene072814.t1;Parent=MS.gene072814.t1 |
chr5.3 | exon | 4298681 | 4299110 | 4298681 | ID=MS.gene072814.t1.exon3;Parent=MS.gene072814.t1 |
chr5.3 | CDS | 4298681 | 4299110 | 4298681 | ID=cds.MS.gene072814.t1;Parent=MS.gene072814.t1 |
Gene Sequence |
Protein sequence |