AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072814


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072814.t1 MTR_5g010800 97.203 286 5 1 1 286 1 283 0.0 577
MS.gene072814.t1 MTR_4g102770 76.208 269 61 2 20 286 19 286 6.67e-158 441
MS.gene072814.t1 MTR_0002s0020 56.401 289 117 3 1 281 1 288 5.11e-119 343
MS.gene072814.t1 MTR_7g103380 56.314 293 112 5 1 280 1 290 1.17e-112 327
MS.gene072814.t1 MTR_1g101390 57.308 260 109 2 20 278 28 286 8.95e-112 325
MS.gene072814.t1 MTR_0113s0040 55.344 262 115 2 16 276 18 278 1.87e-110 321
MS.gene072814.t1 MTR_7g112560 24.453 274 173 8 23 278 4 261 9.90e-28 108
MS.gene072814.t1 MTR_4g023570 25.379 264 161 8 23 277 4 240 4.77e-24 97.8
MS.gene072814.t1 MTR_1g079260 34.722 144 91 3 22 164 6 147 5.22e-22 93.2
MS.gene072814.t1 MTR_1g079180 34.932 146 91 3 22 164 6 150 2.18e-21 91.3
MS.gene072814.t1 MTR_1g079140 33.117 154 96 4 13 161 6 157 6.22e-21 90.9
MS.gene072814.t1 MTR_1g079230 33.562 146 90 4 22 164 6 147 5.05e-19 85.1
MS.gene072814.t1 MTR_1g079380 32.667 150 94 4 18 164 2 147 1.23e-18 84.3
MS.gene072814.t1 MTR_1g079370 25.940 266 184 6 18 273 2 264 2.16e-18 83.2
MS.gene072814.t1 MTR_7g112550 22.414 290 185 9 15 273 2 282 2.52e-18 83.2
MS.gene072814.t1 MTR_1g079200 26.236 263 178 9 22 273 6 263 3.58e-18 82.4
MS.gene072814.t1 MTR_1g079460 25.725 276 169 10 22 275 6 267 1.73e-17 80.5
MS.gene072814.t1 MTR_1g100597 31.250 144 96 3 22 164 6 147 2.05e-17 80.5
MS.gene072814.t1 MTR_1g079850 31.973 147 95 3 22 164 6 151 4.77e-17 79.7
MS.gene072814.t1 MTR_1g083580 28.049 164 112 4 18 176 6 168 5.92e-16 76.6
MS.gene072814.t1 MTR_1g079410 29.870 154 97 4 18 164 6 155 1.02e-15 75.9
MS.gene072814.t1 MTR_3g452600 31.944 144 91 4 20 161 10 148 1.47e-14 72.4
MS.gene072814.t1 MTR_1g079400 28.571 161 102 4 12 164 4 159 4.71e-14 71.2
MS.gene072814.t1 MTR_1g100613 31.008 129 86 3 37 164 6 132 5.33e-14 70.5
MS.gene072814.t1 MTR_1g079250 30.872 149 93 5 22 164 6 150 1.88e-13 69.7
MS.gene072814.t1 MTR_1g079350 28.431 204 120 7 22 216 6 192 8.80e-13 67.4
MS.gene072814.t1 MTR_3g450990 31.852 135 83 5 20 152 10 137 6.46e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072814.t1 AT1G12710 67.181 259 83 2 20 277 28 285 5.95e-128 365
MS.gene072814.t1 AT1G12710 57.807 301 83 3 20 277 28 327 6.73e-119 344
MS.gene072814.t1 AT3G61060 58.242 273 111 3 9 279 14 285 5.94e-118 340
MS.gene072814.t1 AT3G61060 58.029 274 111 4 9 279 14 286 2.10e-116 336
MS.gene072814.t1 AT1G63090 59.507 284 107 3 1 277 1 283 1.50e-114 332
MS.gene072814.t1 AT3G53000 53.333 285 120 3 1 273 1 284 1.08e-103 304
MS.gene072814.t1 AT5G52120 48.772 285 137 3 1 277 1 284 4.95e-98 290
MS.gene072814.t1 AT2G02360 34.591 159 94 4 9 164 3 154 8.89e-27 105
MS.gene072814.t1 AT2G02230 31.792 173 108 6 17 184 29 196 1.32e-23 98.6
MS.gene072814.t1 AT2G02240 34.752 141 86 3 23 162 64 199 1.62e-22 95.5
MS.gene072814.t1 AT1G09155 24.823 282 184 7 23 277 3 283 3.86e-22 94.0
MS.gene072814.t1 AT2G02340 32.927 164 100 5 18 176 34 192 4.74e-22 94.0
MS.gene072814.t1 AT2G02350 36.054 147 83 5 16 158 20 159 9.03e-22 92.8
MS.gene072814.t1 AT2G02250 30.667 150 95 3 15 161 42 185 1.71e-21 92.4
MS.gene072814.t1 AT2G02320 31.285 179 110 6 3 176 22 192 4.04e-20 88.6
MS.gene072814.t1 AT5G24560 26.347 167 112 4 22 187 5 161 1.45e-18 82.0
MS.gene072814.t1 AT2G02310 31.544 149 92 4 18 163 43 184 1.66e-18 84.0
MS.gene072814.t1 AT1G56250 24.232 293 164 8 23 273 4 280 9.63e-17 79.0
MS.gene072814.t1 AT1G56240 24.028 283 185 5 23 277 4 284 2.98e-16 77.4
MS.gene072814.t1 AT1G80110 24.242 264 181 9 20 273 1 255 4.96e-16 76.3
MS.gene072814.t1 AT2G02300 26.891 238 141 10 16 242 30 245 6.89e-13 67.8

Find 70 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGATTTACCAATCAATT+TGG 0.149392 5.3:+4296528 MS.gene072814:CDS
TGGTAAATCATGAAAGATTT+TGG 0.209100 5.3:-4296518 None:intergenic
ATTGAAGCGACGCAACTTTC+AGG 0.233304 5.3:-4296370 None:intergenic
CTTCTTCTGCTGATTTCGTT+TGG 0.259520 5.3:+4296458 MS.gene072814:CDS
GGTTCAACCGGTTCAACTTT+AGG 0.271212 5.3:+4296340 MS.gene072814:CDS
CTGTATGTCCCGGCTGGAAA+TGG 0.317696 5.3:-4298745 None:intergenic
TTCTTCTGCTGATTTCGTTT+GGG 0.325116 5.3:+4296459 MS.gene072814:CDS
CACTAAAGGTGGTCTGTGTT+TGG 0.348141 5.3:+4299026 MS.gene072814:CDS
CATGATTTACCAATCAATTT+GGG 0.351067 5.3:+4296529 MS.gene072814:CDS
AGCCTGTGCGATTCCAACTT+TGG 0.369551 5.3:+4298857 MS.gene072814:CDS
CGCTTCAATCATCGGTTACA+TGG 0.370713 5.3:+4296384 MS.gene072814:CDS
TTCTGAAAGGAACTGGCAAT+TGG 0.389942 5.3:+4298914 MS.gene072814:CDS
TTATTCTTCAGAATACATCT+AGG 0.422202 5.3:+4298769 MS.gene072814:CDS
TCCAACCAAACCGGTTCAAC+CGG 0.434266 5.3:+4296328 MS.gene072814:CDS
TAAAGTTGAACCGGTTGAAC+CGG 0.438212 5.3:-4296338 None:intergenic
ACGACGTCCAAACCTCTTGT+AGG 0.439552 5.3:-4298797 None:intergenic
GGGCAAGCCTACAAGAGGTT+TGG 0.441598 5.3:+4298790 MS.gene072814:CDS
GAATTGATGATAGAAGATAT+TGG 0.446914 5.3:+4297356 MS.gene072814:CDS
CGACTTAATACTATTGATGA+TGG 0.447327 5.3:+4296580 MS.gene072814:CDS
TTGAACCGGTTGAACCGGTT+TGG 0.448850 5.3:-4296333 None:intergenic
AGTCATAGAGAATTTGACTT+TGG 0.459733 5.3:-4298986 None:intergenic
ATATCATCACTGAAGAATCT+AGG 0.462039 5.3:+4297383 MS.gene072814:CDS
TGCAGGTGATTTCACGGTTG+AGG 0.474466 5.3:+4298948 MS.gene072814:CDS
TTCCAACTTTGGACTTCAGA+TGG 0.477540 5.3:+4298868 MS.gene072814:CDS
TAATTCACCTAAAGTTGAAC+CGG 0.483165 5.3:-4296347 None:intergenic
TTACCATGCAGGTGATTTCA+CGG 0.484259 5.3:+4298942 MS.gene072814:CDS
AGTTGCGTCGCTTCAATCAT+CGG 0.485599 5.3:+4296376 MS.gene072814:CDS
TTGCATACCTTCAGCATACC+TGG 0.490977 5.3:+4298692 MS.gene072814:CDS
TGTATGTCCCGGCTGGAAAT+GGG 0.498240 5.3:-4298744 None:intergenic
TCATTTCGATCCAACCAAAC+CGG 0.498725 5.3:+4296319 MS.gene072814:CDS
TGCAACACTGAACATGTTCA+TGG 0.501094 5.3:+4298823 MS.gene072814:CDS
CCTGGTGGTTTGAAGTGGAC+GGG 0.501663 5.3:+4298710 MS.gene072814:CDS
AACAAGGGACTATCAGTACT+TGG 0.501726 5.3:+4297334 MS.gene072814:CDS
GGTGATTTCACGGTTGAGGA+TGG 0.503816 5.3:+4298952 MS.gene072814:CDS
CTTGGCTATATCAGCTAACA+AGG 0.503821 5.3:+4297318 MS.gene072814:CDS
ACCGGTTGAACCGGTTTGGT+TGG 0.509700 5.3:-4296329 None:intergenic
ATTGATTGCACGCACACTAA+AGG 0.512444 5.3:+4299012 MS.gene072814:CDS
CACTGAACATGTTCATGGGT+GGG 0.526344 5.3:+4298828 MS.gene072814:CDS
CAGTTCCTTTCAGAAAACAC+TGG 0.526894 5.3:-4298906 None:intergenic
AGCCACGGGTAAGCTTTGCT+TGG 0.526934 5.3:+4297300 MS.gene072814:CDS
GCCCATCTGAAGTCCAAAGT+TGG 0.536214 5.3:-4298870 None:intergenic
CCCGTCCACTTCAAACCACC+AGG 0.538040 5.3:-4298710 None:intergenic
AATAAGCTGTATGTCCCGGC+TGG 0.538928 5.3:-4298751 None:intergenic
TTGACTTCCCATTTCCAGCC+GGG 0.542798 5.3:+4298737 MS.gene072814:CDS
TCCAACTTTGGACTTCAGAT+GGG 0.543088 5.3:+4298869 MS.gene072814:CDS
GCATACCTGGTGGTTTGAAG+TGG 0.546087 5.3:+4298705 MS.gene072814:CDS
AGGAGAAGATGGTAATTTGT+CGG 0.546308 5.3:-4296493 None:intergenic
GTGATTTCACGGTTGAGGAT+GGG 0.546700 5.3:+4298953 MS.gene072814:CDS
TATTCTTCAGAATACATCTA+GGG 0.555396 5.3:+4298770 MS.gene072814:CDS
ACCTGGTGGTTTGAAGTGGA+CGG 0.561016 5.3:+4298709 MS.gene072814:CDS
GTTTGGATTGATAGAGCCAC+GGG 0.568164 5.3:+4297286 MS.gene072814:CDS
GAAGAATAAGCTGTATGTCC+CGG 0.575375 5.3:-4298755 None:intergenic
GTCCAAAGTTGGAATCGCAC+AGG 0.578305 5.3:-4298859 None:intergenic
CTGGTGGTTTGAAGTGGACG+GGG 0.591797 5.3:+4298711 MS.gene072814:CDS
GTTGACTTCCCATTTCCAGC+CGG 0.592053 5.3:+4298736 MS.gene072814:CDS
AGTTCCTTTCAGAAAACACT+GGG 0.601469 5.3:-4298905 None:intergenic
AGTTTGGATTGATAGAGCCA+CGG 0.603796 5.3:+4297285 MS.gene072814:CDS
GATTGCACGCACACTAAAGG+TGG 0.628473 5.3:+4299015 MS.gene072814:CDS
GCAACACTGAACATGTTCAT+GGG 0.629375 5.3:+4298824 MS.gene072814:CDS
ATCTAGGGCAAGCCTACAAG+AGG 0.631041 5.3:+4298785 MS.gene072814:CDS
CAACCGTGAAATCACCTGCA+TGG 0.636855 5.3:-4298945 None:intergenic
TACTATTGATGATGGCACCA+AGG 0.640156 5.3:+4296588 MS.gene072814:CDS
GCAAGTTGACAGATCTGAGG+AGG 0.643594 5.3:-4296409 None:intergenic
ACACTGAACATGTTCATGGG+TGG 0.656933 5.3:+4298827 MS.gene072814:CDS
CATACCTTCAGCATACCTGG+TGG 0.660309 5.3:+4298695 MS.gene072814:CDS
CAAACCACCAGGTATGCTGA+AGG 0.668408 5.3:-4298699 None:intergenic
TCCTTTCAGAAAACACTGGG+AGG 0.675908 5.3:-4298902 None:intergenic
AGCCAAGCAAAGCTTACCCG+TGG 0.675980 5.3:-4297302 None:intergenic
GTTGCAAGTTGACAGATCTG+AGG 0.684069 5.3:-4296412 None:intergenic
TTGGCTATATCAGCTAACAA+GGG 0.728498 5.3:+4297319 MS.gene072814:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATTATAATCTATTTAATA+GGG + chr5.3:4298229-4298248 MS.gene072814:intron 10.0%
!!! AAAAATTAATTTTGAATGAT+TGG + chr5.3:4296781-4296800 MS.gene072814:intron 10.0%
!!! TTATTATAAATCTATTTTAG+TGG + chr5.3:4298626-4298645 MS.gene072814:intron 10.0%
!!! TTTATCTTTTTCTATAAAAT+TGG + chr5.3:4297126-4297145 MS.gene072814:intron 10.0%
!! CACATTATAATCTATTTAAT+AGG + chr5.3:4298228-4298247 MS.gene072814:intron 15.0%
!!! AGTTATGATATGATATTTTT+GGG + chr5.3:4297838-4297857 MS.gene072814:intron 15.0%
!!! GTATTACATAATTTTCATTA+AGG + chr5.3:4298023-4298042 MS.gene072814:intron 15.0%
!!! TTTTCATTAAGGAATATAAT+TGG + chr5.3:4298034-4298053 MS.gene072814:intron 15.0%
!! AGAAAATCAATATGACTATT+TGG - chr5.3:4298255-4298274 None:intergenic 20.0%
!! TTACATAGATAAATCTTTGT+CGG + chr5.3:4298473-4298492 MS.gene072814:intron 20.0%
!!! ATTGTATTTTCTAGAATAGA+TGG + chr5.3:4297481-4297500 MS.gene072814:intron 20.0%
!!! GAGTTATGATATGATATTTT+TGG + chr5.3:4297837-4297856 MS.gene072814:intron 20.0%
!!! GATATTTATTGTTTTTATCG+AGG - chr5.3:4298209-4298228 None:intergenic 20.0%
!!! GGATTGTCTTAATTTTTTTT+TGG + chr5.3:4297502-4297521 MS.gene072814:intron 20.0%
!!! TTATTTTAGATGATTTAGAC+TGG + chr5.3:4297917-4297936 MS.gene072814:intron 20.0%
!!! TTTTATAAGTTCTCCAATAT+AGG + chr5.3:4297058-4297077 MS.gene072814:intron 20.0%
! AAATGTATGTGTGCTTATTT+CGG + chr5.3:4296731-4296750 MS.gene072814:intron 25.0%
! AACCATTAGAAAAGATTTAG+AGG + chr5.3:4297621-4297640 MS.gene072814:intron 25.0%
! AATCAATAAAGTAATCACCT+TGG - chr5.3:4296608-4296627 None:intergenic 25.0%
! AATCTAGAAAACTATGTTTG+TGG - chr5.3:4297995-4298014 None:intergenic 25.0%
! ATCTAGAAAACTATGTTTGT+GGG - chr5.3:4297994-4298013 None:intergenic 25.0%
! CATGATTTACCAATCAATTT+GGG + chr5.3:4296529-4296548 MS.gene072814:CDS 25.0%
! GTTCTATCAAATACCATATT+TGG - chr5.3:4297661-4297680 None:intergenic 25.0%
! TATTCTTCAGAATACATCTA+GGG + chr5.3:4298770-4298789 MS.gene072814:CDS 25.0%
! TATTTGATAGAACATTATGG+CGG + chr5.3:4297668-4297687 MS.gene072814:intron 25.0%
! TCATGATTTACCAATCAATT+TGG + chr5.3:4296528-4296547 MS.gene072814:CDS 25.0%
! TGGTATTTGATAGAACATTA+TGG + chr5.3:4297665-4297684 MS.gene072814:intron 25.0%
! TTATTCTTCAGAATACATCT+AGG + chr5.3:4298769-4298788 MS.gene072814:CDS 25.0%
!! CAAACATAGTTTTCTAGATT+TGG + chr5.3:4297995-4298014 MS.gene072814:intron 25.0%
!! GAATTGATGATAGAAGATAT+TGG + chr5.3:4297356-4297375 MS.gene072814:CDS 25.0%
!! GAGTTTAAAATCAATTCTAG+AGG + chr5.3:4296837-4296856 MS.gene072814:intron 25.0%
!! TGGTAAATCATGAAAGATTT+TGG - chr5.3:4296521-4296540 None:intergenic 25.0%
!! TTTTCTAATGGTTTCTCTAA+TGG - chr5.3:4297614-4297633 None:intergenic 25.0%
!!! AGCTGTTTTATAACCTATAT+TGG - chr5.3:4297074-4297093 None:intergenic 25.0%
!!! ATAAGTTTTGTGAAACTGTT+TGG + chr5.3:4297006-4297025 MS.gene072814:intron 25.0%
!!! CGAGGTTTTTTTTTCAATTT+AGG - chr5.3:4298191-4298210 None:intergenic 25.0%
!!! GATTTTCTGCATCTTTTTTA+TGG + chr5.3:4298267-4298286 MS.gene072814:intron 25.0%
!!! TAAGTTTTGTGAAACTGTTT+GGG + chr5.3:4297007-4297026 MS.gene072814:intron 25.0%
!!! TGATTAGTTTAATGATGAGA+GGG + chr5.3:4297768-4297787 MS.gene072814:intron 25.0%
!!! TTGATTAGTTTAAAAGAGTC+AGG + chr5.3:4297558-4297577 MS.gene072814:intron 25.0%
!!! TTGATTAGTTTAATGATGAG+AGG + chr5.3:4297767-4297786 MS.gene072814:intron 25.0%
ATATCATCACTGAAGAATCT+AGG + chr5.3:4297383-4297402 MS.gene072814:CDS 30.0%
ATCATCAACTGCGAAAATTA+AGG - chr5.3:4298567-4298586 None:intergenic 30.0%
ATCCATTTCGCGAAAAATTT+AGG - chr5.3:4296662-4296681 None:intergenic 30.0%
CGACTTAATACTATTGATGA+TGG + chr5.3:4296580-4296599 MS.gene072814:CDS 30.0%
GTGAAAATTGGTAAAGTGAT+AGG + chr5.3:4298347-4298366 MS.gene072814:intron 30.0%
TAAAAGAGTCAGGTTAAAAG+AGG + chr5.3:4297568-4297587 MS.gene072814:intron 30.0%
TAATTCACCTAAAGTTGAAC+CGG - chr5.3:4296350-4296369 None:intergenic 30.0%
TCCATTTCGCGAAAAATTTA+GGG - chr5.3:4296661-4296680 None:intergenic 30.0%
TCTAGAAAACTATGTTTGTG+GGG - chr5.3:4297993-4298012 None:intergenic 30.0%
TGGAATCAAACATACACTTA+AGG + chr5.3:4296946-4296965 MS.gene072814:intron 30.0%
! AGTCATAGAGAATTTGACTT+TGG - chr5.3:4298989-4299008 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG - chr5.3:4297626-4297645 None:intergenic 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG - chr5.3:4297604-4297623 None:intergenic 30.0%
! TCTCTTTTACCCAAATTGAT+TGG - chr5.3:4296541-4296560 None:intergenic 30.0%
! TGTATGTTTGATTCCACTTT+TGG - chr5.3:4296942-4296961 None:intergenic 30.0%
!! GATTAGTTTAATGATGAGAG+GGG + chr5.3:4297769-4297788 MS.gene072814:intron 30.0%
!!! AATCTATTTTAGTGGTGCTT+TGG + chr5.3:4298634-4298653 MS.gene072814:intron 30.0%
!!! TTTTTTGTGTGCAGAAAGTT+TGG + chr5.3:4297269-4297288 MS.gene072814:intron 30.0%
AACAGAATTGATCACAATGC+AGG - chr5.3:4297450-4297469 None:intergenic 35.0%
AACCTGTAACCACATGTTTA+AGG - chr5.3:4298117-4298136 None:intergenic 35.0%
ACATGTGTTAGTCCAAGTAT+GGG + chr5.3:4298082-4298101 MS.gene072814:intron 35.0%
ACCTGTAACCACATGTTTAA+GGG - chr5.3:4298116-4298135 None:intergenic 35.0%
AGATTTAGAGGTCAATGAGT+TGG + chr5.3:4297633-4297652 MS.gene072814:intron 35.0%
AGCAAGCATATTTACCAATG+TGG - chr5.3:4298541-4298560 None:intergenic 35.0%
AGTTCCTTTCAGAAAACACT+GGG - chr5.3:4298908-4298927 None:intergenic 35.0%
ATTTCGGTTTAGCGTATGTT+TGG + chr5.3:4296747-4296766 MS.gene072814:intron 35.0%
GACTAACACATGTGGATATT+TGG - chr5.3:4298075-4298094 None:intergenic 35.0%
GACTGGAATACATTCAAGTA+AGG + chr5.3:4297934-4297953 MS.gene072814:intron 35.0%
GATAGGACATCGTTTGAAAA+CGG + chr5.3:4298364-4298383 MS.gene072814:intron 35.0%
TTGGCTATATCAGCTAACAA+GGG + chr5.3:4297319-4297338 MS.gene072814:CDS 35.0%
! AATTGGACTTTTTACCATGC+AGG + chr5.3:4298931-4298950 MS.gene072814:CDS 35.0%
! ACCCTAAATTTTTCGCGAAA+TGG + chr5.3:4296657-4296676 MS.gene072814:intron 35.0%
! AGGAGAAGATGGTAATTTGT+CGG - chr5.3:4296496-4296515 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr5.3:4297645-4297664 MS.gene072814:intron 35.0%
! GGAGCAAAAATCGATTCTAA+AGG - chr5.3:4296918-4296937 None:intergenic 35.0%
! TGCTCTTTTTGAATTCGCTT+GGG - chr5.3:4299068-4299087 None:intergenic 35.0%
! TTGCTCTTTTTGAATTCGCT+TGG - chr5.3:4299069-4299088 None:intergenic 35.0%
! TTGTTTGAGTTCAACCACAT+TGG + chr5.3:4298524-4298543 MS.gene072814:intron 35.0%
!! AAGGTAATGGAGAGAACTAA+GGG + chr5.3:4297792-4297811 MS.gene072814:intron 35.0%
!! AATCATGAAAGATTTTGGCG+AGG - chr5.3:4296516-4296535 None:intergenic 35.0%
!! ATGTTTGATTCCACTTTTGG+AGG - chr5.3:4296939-4296958 None:intergenic 35.0%
!! CACTTGATGATGGTGAAAAT+TGG + chr5.3:4298335-4298354 MS.gene072814:intron 35.0%
!! TTCTTCTGCTGATTTCGTTT+GGG + chr5.3:4296459-4296478 MS.gene072814:CDS 35.0%
AACAAGGGACTATCAGTACT+TGG + chr5.3:4297334-4297353 MS.gene072814:CDS 40.0%
AACCACATGTTTAAGGGACA+CGG - chr5.3:4298110-4298129 None:intergenic 40.0%
ACAGGTTCAATTCATACCCA+GGG + chr5.3:4298130-4298149 MS.gene072814:intron 40.0%
ACATACACTTAAGGCCAGTT+TGG + chr5.3:4296955-4296974 MS.gene072814:intron 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr5.3:4297574-4297593 MS.gene072814:intron 40.0%
AGTTTAATGATGAGAGGGGA+AGG + chr5.3:4297773-4297792 MS.gene072814:intron 40.0%
AGTTTGGATTGATAGAGCCA+CGG + chr5.3:4297285-4297304 MS.gene072814:CDS 40.0%
ATGTGTTAGTCCAAGTATGG+GGG + chr5.3:4298084-4298103 MS.gene072814:intron 40.0%
ATTGATTGCACGCACACTAA+AGG + chr5.3:4299012-4299031 MS.gene072814:CDS 40.0%
CACATGTGTTAGTCCAAGTA+TGG + chr5.3:4298081-4298100 MS.gene072814:intron 40.0%
CAGTTCCTTTCAGAAAACAC+TGG - chr5.3:4298909-4298928 None:intergenic 40.0%
CATACTTGGACTAACACATG+TGG - chr5.3:4298083-4298102 None:intergenic 40.0%
CATGTGTTAGTCCAAGTATG+GGG + chr5.3:4298083-4298102 MS.gene072814:intron 40.0%
CTTGGCTATATCAGCTAACA+AGG + chr5.3:4297318-4297337 MS.gene072814:CDS 40.0%
CTTTGTCGGTACTATTGTGA+AGG + chr5.3:4298487-4298506 MS.gene072814:intron 40.0%
GAAGAATAAGCTGTATGTCC+CGG - chr5.3:4298758-4298777 None:intergenic 40.0%
GATAAGCTGTTTGTCCAAAC+AGG + chr5.3:4297207-4297226 MS.gene072814:intron 40.0%
GCAACACTGAACATGTTCAT+GGG + chr5.3:4298824-4298843 MS.gene072814:CDS 40.0%
GTTTGTCCAAACAGGCTTAT+TGG + chr5.3:4297215-4297234 MS.gene072814:intron 40.0%
TAAAGTTGAACCGGTTGAAC+CGG - chr5.3:4296341-4296360 None:intergenic 40.0%
TAATGGAGAGAACTAAGGGA+GGG + chr5.3:4297796-4297815 MS.gene072814:intron 40.0%
TACAGGTTCAATTCATACCC+AGG + chr5.3:4298129-4298148 MS.gene072814:intron 40.0%
TCAAACAAGCCAATCCAAAC+TGG - chr5.3:4296972-4296991 None:intergenic 40.0%
TCATTTCGATCCAACCAAAC+CGG + chr5.3:4296319-4296338 MS.gene072814:CDS 40.0%
TCCAACTTTGGACTTCAGAT+GGG + chr5.3:4298869-4298888 MS.gene072814:CDS 40.0%
TCCCTTAAACATGTGGTTAC+AGG + chr5.3:4298112-4298131 MS.gene072814:intron 40.0%
TGCAACACTGAACATGTTCA+TGG + chr5.3:4298823-4298842 MS.gene072814:CDS 40.0%
TTACCATGCAGGTGATTTCA+CGG + chr5.3:4298942-4298961 MS.gene072814:CDS 40.0%
TTCCAACTTTGGACTTCAGA+TGG + chr5.3:4298868-4298887 MS.gene072814:CDS 40.0%
! AAACAGGCTTATTGGCTGAT+GGG + chr5.3:4297223-4297242 MS.gene072814:intron 40.0%
! ATTCTTCCATCGACTAGTCA+AGG - chr5.3:4298165-4298184 None:intergenic 40.0%
! GATTTTTGCTCCTCCAAAAG+TGG + chr5.3:4296926-4296945 MS.gene072814:intron 40.0%
! TTCTGAAAGGAACTGGCAAT+TGG + chr5.3:4298914-4298933 MS.gene072814:CDS 40.0%
! TTCTTCCATCGACTAGTCAA+GGG - chr5.3:4298164-4298183 None:intergenic 40.0%
!! CAGTGTTTTCTGAAAGGAAC+TGG + chr5.3:4298907-4298926 MS.gene072814:CDS 40.0%
!! CTTCTTCTGCTGATTTCGTT+TGG + chr5.3:4296458-4296477 MS.gene072814:CDS 40.0%
!! GAAGGTAATGGAGAGAACTA+AGG + chr5.3:4297791-4297810 MS.gene072814:intron 40.0%
!! TACTATTGATGATGGCACCA+AGG + chr5.3:4296588-4296607 MS.gene072814:CDS 40.0%
AATGGAGAGAACTAAGGGAG+GGG + chr5.3:4297797-4297816 MS.gene072814:intron 45.0%
ACACTGAACATGTTCATGGG+TGG + chr5.3:4298827-4298846 MS.gene072814:CDS 45.0%
AGTCAAGGGATCAATTACCC+TGG - chr5.3:4298150-4298169 None:intergenic 45.0%
AGTTGCGTCGCTTCAATCAT+CGG + chr5.3:4296376-4296395 MS.gene072814:CDS 45.0%
ATCATCAAGTGCGCGAGAAT+AGG - chr5.3:4298326-4298345 None:intergenic 45.0%
ATGATGAGAGGGGAAGGTAA+TGG + chr5.3:4297779-4297798 MS.gene072814:intron 45.0%
ATTACGCTTCTCTGCTACTG+AGG + chr5.3:4298429-4298448 MS.gene072814:intron 45.0%
ATTGAAGCGACGCAACTTTC+AGG - chr5.3:4296373-4296392 None:intergenic 45.0%
CACTAAAGGTGGTCTGTGTT+TGG + chr5.3:4299026-4299045 MS.gene072814:CDS 45.0%
CACTGAACATGTTCATGGGT+GGG + chr5.3:4298828-4298847 MS.gene072814:CDS 45.0%
CACTTAAGGCCAGTTTGGAT+TGG + chr5.3:4296960-4296979 MS.gene072814:intron 45.0%
CATCAGCCAATAAGCCTGTT+TGG - chr5.3:4297224-4297243 None:intergenic 45.0%
GTCAAGGGATCAATTACCCT+GGG - chr5.3:4298149-4298168 None:intergenic 45.0%
GTGATTTCACGGTTGAGGAT+GGG + chr5.3:4298953-4298972 MS.gene072814:CDS 45.0%
GTTTGGATTGATAGAGCCAC+GGG + chr5.3:4297286-4297305 MS.gene072814:CDS 45.0%
TATTCTCGCGCACTTGATGA+TGG + chr5.3:4298325-4298344 MS.gene072814:intron 45.0%
TCCTTTCAGAAAACACTGGG+AGG - chr5.3:4298905-4298924 None:intergenic 45.0%
TTGCATACCTTCAGCATACC+TGG + chr5.3:4298692-4298711 MS.gene072814:CDS 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr5.3:4297714-4297733 None:intergenic 45.0%
! CAAACAGGCTTATTGGCTGA+TGG + chr5.3:4297222-4297241 MS.gene072814:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr5.3:4297715-4297734 None:intergenic 45.0%
! CGCTTCAATCATCGGTTACA+TGG + chr5.3:4296384-4296403 MS.gene072814:CDS 45.0%
! GGTTCAACCGGTTCAACTTT+AGG + chr5.3:4296340-4296359 MS.gene072814:CDS 45.0%
! GTAATGGAGAGAACTAAGGG+AGG + chr5.3:4297795-4297814 MS.gene072814:intron 45.0%
! GTTGCAAGTTGACAGATCTG+AGG - chr5.3:4296415-4296434 None:intergenic 45.0%
! TTGATCCCTTGACTAGTCGA+TGG + chr5.3:4298156-4298175 MS.gene072814:intron 45.0%
!! AGATTTTGGCGAGGAGAAGA+TGG - chr5.3:4296507-4296526 None:intergenic 45.0%
!! GGCTGATGGGTTTGGATATA+TGG + chr5.3:4297236-4297255 MS.gene072814:intron 45.0%
AATAAGCTGTATGTCCCGGC+TGG - chr5.3:4298754-4298773 None:intergenic 50.0%
ACGACGTCCAAACCTCTTGT+AGG - chr5.3:4298800-4298819 None:intergenic 50.0%
AGCCTGTGCGATTCCAACTT+TGG + chr5.3:4298857-4298876 MS.gene072814:CDS 50.0%
ATGGAGAGAACTAAGGGAGG+GGG + chr5.3:4297798-4297817 MS.gene072814:intron 50.0%
CAAACCACCAGGTATGCTGA+AGG - chr5.3:4298702-4298721 None:intergenic 50.0%
CAACCGTGAAATCACCTGCA+TGG - chr5.3:4298948-4298967 None:intergenic 50.0%
CATACCTTCAGCATACCTGG+TGG + chr5.3:4298695-4298714 MS.gene072814:CDS 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr5.3:4297713-4297732 MS.gene072814:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr5.3:4297710-4297729 None:intergenic 50.0%
GATTGCACGCACACTAAAGG+TGG + chr5.3:4299015-4299034 MS.gene072814:CDS 50.0%
GCATACCTGGTGGTTTGAAG+TGG + chr5.3:4298705-4298724 MS.gene072814:CDS 50.0%
GGTGATTTCACGGTTGAGGA+TGG + chr5.3:4298952-4298971 MS.gene072814:CDS 50.0%
GTCCAAAGTTGGAATCGCAC+AGG - chr5.3:4298862-4298881 None:intergenic 50.0%
TGCAGGTGATTTCACGGTTG+AGG + chr5.3:4298948-4298967 MS.gene072814:CDS 50.0%
TGTATGTCCCGGCTGGAAAT+GGG - chr5.3:4298747-4298766 None:intergenic 50.0%
TTGAACCGGTTGAACCGGTT+TGG - chr5.3:4296336-4296355 None:intergenic 50.0%
TTGACTTCCCATTTCCAGCC+GGG + chr5.3:4298737-4298756 MS.gene072814:CDS 50.0%
! ACCTGGTGGTTTGAAGTGGA+CGG + chr5.3:4298709-4298728 MS.gene072814:CDS 50.0%
! ATCTAGGGCAAGCCTACAAG+AGG + chr5.3:4298785-4298804 MS.gene072814:CDS 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr5.3:4297716-4297735 None:intergenic 50.0%
! GCAAGTTGACAGATCTGAGG+AGG - chr5.3:4296412-4296431 None:intergenic 50.0%
! GCCCATCTGAAGTCCAAAGT+TGG - chr5.3:4298873-4298892 None:intergenic 50.0%
! GCCTCCCAGTGTTTTCTGAA+AGG + chr5.3:4298901-4298920 MS.gene072814:CDS 50.0%
! GTTGACTTCCCATTTCCAGC+CGG + chr5.3:4298736-4298755 MS.gene072814:CDS 50.0%
! TCCAACCAAACCGGTTCAAC+CGG + chr5.3:4296328-4296347 MS.gene072814:CDS 50.0%
!! GGCTTATTGGCTGATGGGTT+TGG + chr5.3:4297228-4297247 MS.gene072814:intron 50.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr5.3:4297702-4297721 None:intergenic 55.0%
AGAGAACTAAGGGAGGGGGA+AGG + chr5.3:4297802-4297821 MS.gene072814:intron 55.0%
AGCCAAGCAAAGCTTACCCG+TGG - chr5.3:4297305-4297324 None:intergenic 55.0%
AGCCACGGGTAAGCTTTGCT+TGG + chr5.3:4297300-4297319 MS.gene072814:CDS 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr5.3:4297701-4297720 MS.gene072814:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr5.3:4297708-4297727 MS.gene072814:intron 55.0%
CTGTATGTCCCGGCTGGAAA+TGG - chr5.3:4298748-4298767 None:intergenic 55.0%
GCTTCTCTGCTACTGAGGCA+CGG + chr5.3:4298434-4298453 MS.gene072814:intron 55.0%
GGCCGTGTCCCTTAAACATG+TGG + chr5.3:4298105-4298124 MS.gene072814:intron 55.0%
GGGCAAGCCTACAAGAGGTT+TGG + chr5.3:4298790-4298809 MS.gene072814:CDS 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr5.3:4297702-4297721 MS.gene072814:intron 55.0%
! CCTGGTGGTTTGAAGTGGAC+GGG + chr5.3:4298710-4298729 MS.gene072814:CDS 55.0%
! CTGGTGGTTTGAAGTGGACG+GGG + chr5.3:4298711-4298730 MS.gene072814:CDS 55.0%
!! ACCGGTTGAACCGGTTTGGT+TGG - chr5.3:4296332-4296351 None:intergenic 55.0%
AAGGGAGGGGGAAGGAATCG+AGG + chr5.3:4297810-4297829 MS.gene072814:intron 60.0%
AGGGAGGGGGAAGGAATCGA+GGG + chr5.3:4297811-4297830 MS.gene072814:intron 60.0%
AGGGGGAAGGAATCGAGGGA+TGG + chr5.3:4297815-4297834 MS.gene072814:intron 60.0%
CCCGTCCACTTCAAACCACC+AGG - chr5.3:4298713-4298732 None:intergenic 60.0%
AGGGACACGGCCCCCATACT+TGG - chr5.3:4298097-4298116 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 4296301 4299110 4296301 ID=MS.gene072814
chr5.3 mRNA 4296301 4299110 4296301 ID=MS.gene072814.t1;Parent=MS.gene072814
chr5.3 exon 4296301 4296609 4296301 ID=MS.gene072814.t1.exon1;Parent=MS.gene072814.t1
chr5.3 CDS 4296301 4296609 4296301 ID=cds.MS.gene072814.t1;Parent=MS.gene072814.t1
chr5.3 exon 4297283 4297404 4297283 ID=MS.gene072814.t1.exon2;Parent=MS.gene072814.t1
chr5.3 CDS 4297283 4297404 4297283 ID=cds.MS.gene072814.t1;Parent=MS.gene072814.t1
chr5.3 exon 4298681 4299110 4298681 ID=MS.gene072814.t1.exon3;Parent=MS.gene072814.t1
chr5.3 CDS 4298681 4299110 4298681 ID=cds.MS.gene072814.t1;Parent=MS.gene072814.t1
Gene Sequence

>MS.gene072814

ATGGGTATTCGCTTTTCTTCATTTCGATCCAACCAAACCGGTTCAACCGGTTCAACTTTAGGTGAATTACCTGAAAGTTGCGTCGCTTCAATCATCGGTTACATGGATCCTCCTCAGATCTGTCAACTTGCAACGTTGAATCGTGCTTTTCGTGCTGCTTCTTCTGCTGATTTCGTTTGGGAATCTAAATTGCCGACAAATTACCATCTTCTCCTCGCCAAAATCTTTCATGATTTACCAATCAATTTGGGTAAAAGAGACATTTATGCTTCTCTTTGTCGACTTAATACTATTGATGATGGCACCAAGGTGATTACTTTATTGATTACGTTTTTTAATTCTGTTTATTTACAAAAACCCTAAATTTTTCGCGAAATGGATAAAATCATGTTTTTTTTTTTTTTTTTTAATTTAGAAGTTGAAGATGCTTAAATGTATGTGTGCTTATTTCGGTTTAGCGTATGTTTGGTTCTGCGTGACAAAAATTAATTTTGAATGATTGGTTATGTAGAATTGATTCTGAATTAAATACATTTGAGTTTAAAATCAATTCTAGAGGTAAAATTGATTATACTTGAGAGCAACTAAATATGTCAAAATCAGTTAATTCTATACCTTTAGAATCGATTTTTGCTCCTCCAAAAGTGGAATCAAACATACACTTAAGGCCAGTTTGGATTGGCTTGTTTGAGCTTATCTAGTGACATAAGTTTTGTGAAACTGTTTGGGAGAACTTATGAAAACAGCTTATGACAATTTTTATAAGTTCTCCAATATAGGTTATAAAACAGCTTATATAACATATACAAAAACAATATAACTTTATTTATCTTTTTCTATAAAATTGGCTTGTTTAAGCTTATGCATAAGCGCTTATCATGATAAGCACTTGTGTTATAAGCTGCAGATAAGCTGTTTGTCCAAACAGGCTTATTGGCTGATGGGTTTGGATATATGGTTTTTTTTTTTTTTTTGTGTGCAGAAAGTTTGGATTGATAGAGCCACGGGTAAGCTTTGCTTGGCTATATCAGCTAACAAGGGACTATCAGTACTTGGAATTGATGATAGAAGATATTGGAATTATATCATCACTGAAGAATCTAGGTGAGTTTCTTCACATTTATGTTTGTAGAATGTAGCAAGTTTCCTGCATTGTGATCAATTCTGTTTCTAACATGCAATTGTATTTTCTAGAATAGATGGATTGTCTTAATTTTTTTTTGGTATAAGCATGCTTTTATTCTCTTTCTGTTGTCATTGATTAGTTTAAAAGAGTCAGGTTAAAAGAGGTAGAGGAAGACCTAAGAAAACCATTAGAGAAACCATTAGAAAAGATTTAGAGGTCAATGAGTTGGATCCAAATATGGTATTTGATAGAACATTATGGCGGCATTTGATCCATGTAGCCGACCCCACTTAGTGGGATAAGGCTTGGTTGTTGTTGTTGTTGTTGTTGTCTGTTGTCATTGATTAGTTTAATGATGAGAGGGGAAGGTAATGGAGAGAACTAAGGGAGGGGGAAGGAATCGAGGGATGGAGTTATGATATGATATTTTTGGGTGTGAATATAACAGACATATAGTATCTGCTAATTTTTATCTTCTTTCATTGCTTATTTATTTTAGATGATTTAGACTGGAATACATTCAAGTAAGGTCTACAATTTTTTTTTTGTCTTAAACTGCAAATCCCCACAAACATAGTTTTCTAGATTTGGCGTTAGTATTACATAATTTTCATTAAGGAATATAATTGGATAGTAAATCAAATGCCAAATATCCACATGTGTTAGTCCAAGTATGGGGGCCGTGTCCCTTAAACATGTGGTTACAGGTTCAATTCATACCCAGGGTAATTGATCCCTTGACTAGTCGATGGAAGAATACTCCTAAATTGAAAAAAAAACCTCGATAAAAACAATAAATATCACATTATAATCTATTTAATAGGGCCAAATAGTCATATTGATTTTCTGCATCTTTTTTATGGTTAAGTATCTACATAAAATCTATTCTCTATTGTCCTATTCTCGCGCACTTGATGATGGTGAAAATTGGTAAAGTGATAGGACATCGTTTGAAAACGGAATAACTTAGTTGAAGCAAAATTATTTTCAACATGTTTGTATATTACGCTTCTCTGCTACTGAGGCACGGAGCACATATTGCTAAGTTACATAGATAAATCTTTGTCGGTACTATTGTGAAGGAAAATTAGTGAATATTGTTTGAGTTCAACCACATTGGTAAATATGCTTGCTTTTCCTTAATTTTCGCAGTTGATGATGTGAGCTGTGAAGCTCATTATCAAGTAGTTTGATTGTCATTATTATAAATCTATTTTAGTGGTGCTTTGGAATTGAATTGTGTTATCTCTACAGATTCAATACTGTTGCATACCTTCAGCATACCTGGTGGTTTGAAGTGGACGGGGAAGTTGACTTCCCATTTCCAGCCGGGACATACAGCTTATTCTTCAGAATACATCTAGGGCAAGCCTACAAGAGGTTTGGACGTCGTGTCTGCAACACTGAACATGTTCATGGGTGGGACAAAAAGCCTGTGCGATTCCAACTTTGGACTTCAGATGGGCAATACGTTGCCTCCCAGTGTTTTCTGAAAGGAACTGGCAATTGGACTTTTTACCATGCAGGTGATTTCACGGTTGAGGATGGGAATTCATCAACCAAAGTCAAATTCTCTATGACTCAAATTGATTGCACGCACACTAAAGGTGGTCTGTGTTTGGATTCTGCTTTTATTTACCCAAGCGAATTCAAAAAGAGCAAGTCATTTTTAAACTGCTCCTAA

Protein sequence

>MS.gene072814.t1

MGIRFSSFRSNQTGSTGSTLGELPESCVASIIGYMDPPQICQLATLNRAFRAASSADFVWESKLPTNYHLLLAKIFHDLPINLGKRDIYASLCRLNTIDDGTKKVWIDRATGKLCLAISANKGLSVLGIDDRRYWNYIITEESRFNTVAYLQHTWWFEVDGEVDFPFPAGTYSLFFRIHLGQAYKRFGRRVCNTEHVHGWDKKPVRFQLWTSDGQYVASQCFLKGTGNWTFYHAGDFTVEDGNSSTKVKFSMTQIDCTHTKGGLCLDSAFIYPSEFKKSKSFLNCS