Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011426.t1 | XP_013457676.1 | 95.1 | 286 | 14 | 0 | 1 | 286 | 1 | 286 | 1.00E-166 | 595.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011426.t1 | Q9LN77 | 68.0 | 269 | 82 | 3 | 16 | 282 | 25 | 291 | 1.9e-110 | 400.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011426.t1 | A0A072UPT1 | 95.1 | 286 | 14 | 0 | 1 | 286 | 1 | 286 | 7.2e-167 | 595.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072532 | MS.gene011426 | PPI |
| MS.gene49051 | MS.gene011426 | PPI |
| MS.gene054425 | MS.gene011426 | PPI |
| MS.gene41397 | MS.gene011426 | PPI |
| MS.gene007330 | MS.gene011426 | PPI |
| MS.gene050935 | MS.gene011426 | PPI |
| MS.gene22796 | MS.gene011426 | PPI |
| MS.gene40823 | MS.gene011426 | PPI |
| MS.gene34457 | MS.gene011426 | PPI |
| MS.gene007614 | MS.gene011426 | PPI |
| MS.gene020575 | MS.gene011426 | PPI |
| MS.gene006331 | MS.gene011426 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011426.t1 | MTR_4g102770 | 95.105 | 286 | 14 | 0 | 1 | 286 | 1 | 286 | 0.0 | 552 |
| MS.gene011426.t1 | MTR_5g010800 | 73.868 | 287 | 70 | 3 | 1 | 286 | 1 | 283 | 2.09e-158 | 442 |
| MS.gene011426.t1 | MTR_0002s0020 | 60.854 | 281 | 103 | 2 | 1 | 274 | 1 | 281 | 3.72e-126 | 361 |
| MS.gene011426.t1 | MTR_1g101390 | 62.308 | 260 | 97 | 1 | 19 | 278 | 28 | 286 | 8.89e-121 | 347 |
| MS.gene011426.t1 | MTR_0113s0040 | 58.672 | 271 | 110 | 2 | 13 | 282 | 16 | 285 | 3.49e-117 | 338 |
| MS.gene011426.t1 | MTR_7g103380 | 55.670 | 291 | 117 | 2 | 1 | 280 | 1 | 290 | 4.13e-113 | 328 |
| MS.gene011426.t1 | MTR_7g112560 | 26.642 | 274 | 168 | 7 | 22 | 278 | 4 | 261 | 1.20e-28 | 110 |
| MS.gene011426.t1 | MTR_4g023570 | 27.132 | 258 | 165 | 5 | 22 | 277 | 4 | 240 | 6.18e-27 | 105 |
| MS.gene011426.t1 | MTR_1g083580 | 25.862 | 290 | 165 | 9 | 18 | 273 | 7 | 280 | 4.71e-22 | 93.2 |
| MS.gene011426.t1 | MTR_7g112550 | 25.357 | 280 | 182 | 5 | 18 | 273 | 6 | 282 | 3.06e-21 | 91.3 |
| MS.gene011426.t1 | MTR_1g079180 | 35.417 | 144 | 92 | 1 | 21 | 163 | 6 | 149 | 6.95e-21 | 89.7 |
| MS.gene011426.t1 | MTR_1g079460 | 28.090 | 267 | 175 | 6 | 21 | 275 | 6 | 267 | 1.05e-20 | 89.4 |
| MS.gene011426.t1 | MTR_1g079260 | 36.111 | 144 | 88 | 2 | 21 | 163 | 6 | 146 | 1.39e-20 | 89.4 |
| MS.gene011426.t1 | MTR_1g079230 | 35.417 | 144 | 89 | 2 | 21 | 163 | 6 | 146 | 1.03e-19 | 87.0 |
| MS.gene011426.t1 | MTR_1g079370 | 34.247 | 146 | 92 | 2 | 19 | 163 | 4 | 146 | 7.90e-19 | 84.3 |
| MS.gene011426.t1 | MTR_1g079380 | 28.223 | 287 | 174 | 8 | 19 | 286 | 4 | 277 | 4.44e-18 | 82.8 |
| MS.gene011426.t1 | MTR_1g100613 | 36.154 | 130 | 79 | 2 | 36 | 164 | 6 | 132 | 4.75e-18 | 81.6 |
| MS.gene011426.t1 | MTR_1g079140 | 36.054 | 147 | 88 | 3 | 21 | 163 | 15 | 159 | 5.66e-18 | 82.4 |
| MS.gene011426.t1 | MTR_1g100597 | 33.333 | 144 | 92 | 2 | 21 | 163 | 6 | 146 | 1.99e-17 | 80.5 |
| MS.gene011426.t1 | MTR_1g079410 | 32.667 | 150 | 99 | 2 | 16 | 163 | 5 | 154 | 3.17e-17 | 80.1 |
| MS.gene011426.t1 | MTR_1g079200 | 33.562 | 146 | 92 | 3 | 21 | 165 | 6 | 147 | 3.40e-17 | 79.7 |
| MS.gene011426.t1 | MTR_3g452600 | 32.886 | 149 | 90 | 5 | 19 | 164 | 10 | 151 | 2.87e-15 | 74.3 |
| MS.gene011426.t1 | MTR_1g079400 | 31.944 | 144 | 96 | 2 | 22 | 163 | 15 | 158 | 1.80e-14 | 72.4 |
| MS.gene011426.t1 | MTR_1g079850 | 32.653 | 147 | 93 | 3 | 21 | 163 | 6 | 150 | 2.85e-14 | 71.6 |
| MS.gene011426.t1 | MTR_1g079250 | 33.333 | 147 | 91 | 3 | 21 | 163 | 6 | 149 | 3.31e-13 | 68.9 |
| MS.gene011426.t1 | MTR_1g079350 | 27.805 | 205 | 127 | 5 | 21 | 219 | 6 | 195 | 3.38e-12 | 65.9 |
| MS.gene011426.t1 | MTR_3g450990 | 32.847 | 137 | 80 | 6 | 19 | 152 | 10 | 137 | 4.95e-12 | 65.5 |
| MS.gene011426.t1 | MTR_3g006850 | 27.326 | 172 | 106 | 4 | 7 | 163 | 5 | 172 | 5.63e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011426.t1 | AT1G12710 | 68.030 | 269 | 82 | 3 | 16 | 282 | 25 | 291 | 6.03e-135 | 383 |
| MS.gene011426.t1 | AT3G61060 | 62.782 | 266 | 97 | 2 | 14 | 278 | 20 | 284 | 6.24e-127 | 363 |
| MS.gene011426.t1 | AT1G12710 | 58.842 | 311 | 82 | 4 | 16 | 282 | 25 | 333 | 3.09e-126 | 363 |
| MS.gene011426.t1 | AT3G61060 | 62.547 | 267 | 97 | 3 | 14 | 278 | 20 | 285 | 3.00e-125 | 359 |
| MS.gene011426.t1 | AT1G63090 | 65.769 | 260 | 86 | 2 | 16 | 274 | 23 | 280 | 1.16e-122 | 352 |
| MS.gene011426.t1 | AT5G52120 | 52.174 | 276 | 127 | 1 | 7 | 277 | 9 | 284 | 4.76e-104 | 305 |
| MS.gene011426.t1 | AT3G53000 | 54.104 | 268 | 110 | 3 | 17 | 273 | 19 | 284 | 1.03e-99 | 294 |
| MS.gene011426.t1 | AT2G02360 | 36.129 | 155 | 85 | 4 | 10 | 161 | 8 | 151 | 5.68e-25 | 101 |
| MS.gene011426.t1 | AT2G02340 | 31.429 | 175 | 113 | 3 | 5 | 176 | 22 | 192 | 9.67e-23 | 95.9 |
| MS.gene011426.t1 | AT2G02230 | 34.266 | 143 | 87 | 2 | 22 | 163 | 35 | 171 | 4.55e-21 | 91.7 |
| MS.gene011426.t1 | AT1G09155 | 24.735 | 283 | 184 | 6 | 22 | 277 | 3 | 283 | 2.93e-20 | 88.6 |
| MS.gene011426.t1 | AT2G02240 | 34.507 | 142 | 86 | 3 | 22 | 162 | 64 | 199 | 4.96e-20 | 88.6 |
| MS.gene011426.t1 | AT5G24560 | 28.276 | 145 | 97 | 2 | 21 | 164 | 5 | 143 | 5.88e-18 | 80.5 |
| MS.gene011426.t1 | AT2G02350 | 31.544 | 149 | 86 | 5 | 18 | 160 | 23 | 161 | 8.20e-18 | 82.0 |
| MS.gene011426.t1 | AT2G02250 | 27.875 | 287 | 165 | 12 | 17 | 283 | 44 | 308 | 8.71e-18 | 82.0 |
| MS.gene011426.t1 | AT1G80110 | 24.528 | 265 | 180 | 8 | 19 | 273 | 1 | 255 | 2.15e-17 | 80.1 |
| MS.gene011426.t1 | AT2G02310 | 25.651 | 269 | 176 | 8 | 21 | 275 | 47 | 305 | 3.92e-17 | 80.1 |
| MS.gene011426.t1 | AT1G56240 | 26.071 | 280 | 176 | 7 | 22 | 273 | 4 | 280 | 7.82e-16 | 76.3 |
| MS.gene011426.t1 | AT1G56250 | 24.232 | 293 | 165 | 6 | 22 | 273 | 4 | 280 | 1.30e-15 | 75.5 |
| MS.gene011426.t1 | AT2G02300 | 25.993 | 277 | 163 | 9 | 18 | 277 | 33 | 284 | 3.16e-14 | 71.6 |
| MS.gene011426.t1 | AT2G02320 | 24.746 | 295 | 181 | 12 | 4 | 275 | 24 | 300 | 8.22e-14 | 70.9 |
Find 62 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAACAGCTACACAGCTTTC+TGG | 0.183101 | 8.2:-20944382 | None:intergenic |
| TTATTCTTCCGAATACATTT+AGG | 0.199539 | 8.2:+20945690 | MS.gene011426:CDS |
| TTGATTCTTCAGTGGGAATA+TGG | 0.245615 | 8.2:-20944801 | None:intergenic |
| ATCATAATTAGAGGGAAGTT+TGG | 0.273067 | 8.2:-20944497 | None:intergenic |
| GCTAAAGGGTTGTCAATAAC+TGG | 0.296742 | 8.2:+20944754 | MS.gene011426:CDS |
| CTTCAAACCACCAGATTTGT+TGG | 0.309545 | 8.2:-20945623 | None:intergenic |
| AATTCTCCTAAACTTGGTTT+TGG | 0.321554 | 8.2:-20944358 | None:intergenic |
| TATTCTTCCGAATACATTTA+GGG | 0.326850 | 8.2:+20945691 | MS.gene011426:CDS |
| TATTATTATTGTAGAAAGTT+TGG | 0.336627 | 8.2:+20944692 | MS.gene011426:intron |
| GGGAAACCCGCCAAGAGATT+TGG | 0.340849 | 8.2:+20945711 | MS.gene011426:CDS |
| CTATATGTTCCTGCTGGAAA+TGG | 0.353545 | 8.2:-20945666 | None:intergenic |
| CGGGTTTCCCTAAATGTATT+CGG | 0.356289 | 8.2:-20945698 | None:intergenic |
| AATTATAACATCATAATTAG+AGG | 0.373488 | 8.2:-20944506 | None:intergenic |
| TAAAGTGTGTTTGTCTATAT+CGG | 0.379273 | 8.2:+20944732 | MS.gene011426:CDS |
| GTCCATAGTTGGAATCTAAC+AGG | 0.395466 | 8.2:-20945780 | None:intergenic |
| AAGCTGTGTAGCTGTTATAA+TGG | 0.396206 | 8.2:+20944387 | MS.gene011426:CDS |
| TCATCACCAAAACCAAGTTT+AGG | 0.402083 | 8.2:+20944352 | MS.gene011426:CDS |
| TTGCGTATCTCCAACAAATC+TGG | 0.415817 | 8.2:+20945613 | MS.gene011426:CDS |
| AGCCTGTTAGATTCCAACTA+TGG | 0.436078 | 8.2:+20945778 | MS.gene011426:CDS |
| TGGTAATAGCGCCATTTACC+TGG | 0.441087 | 8.2:-20945846 | None:intergenic |
| TGCAACACAGAACATGTTCA+TGG | 0.443142 | 8.2:+20945744 | MS.gene011426:CDS |
| GGATTGATGATCGAAGATAT+TGG | 0.446080 | 8.2:+20944776 | MS.gene011426:CDS |
| CCGCCAAGAGATTTGGAAGA+AGG | 0.447038 | 8.2:+20945718 | MS.gene011426:CDS |
| AGCTGTTATAATGGAATACT+TGG | 0.448318 | 8.2:+20944396 | MS.gene011426:CDS |
| AACCCTTCTTCCAAATCTCT+TGG | 0.453456 | 8.2:-20945721 | None:intergenic |
| CCTTCTCATTTGGGGAAAAG+AGG | 0.454751 | 8.2:+20944556 | MS.gene011426:CDS |
| AGCTTCAATACTTTCGATGA+AGG | 0.456690 | 8.2:+20944598 | MS.gene011426:CDS |
| CCTTCTTCCAAATCTCTTGG+CGG | 0.463503 | 8.2:-20945718 | None:intergenic |
| TCTGGTAATTCTCCTAAACT+TGG | 0.464696 | 8.2:-20944364 | None:intergenic |
| CACAGAACATGTTCATGGTT+GGG | 0.465386 | 8.2:+20945749 | MS.gene011426:CDS |
| TATATGTTCCTGCTGGAAAT+GGG | 0.468372 | 8.2:-20945665 | None:intergenic |
| CGCCAAGAGATTTGGAAGAA+GGG | 0.472287 | 8.2:+20945719 | MS.gene011426:CDS |
| TGTTTGTCTATATCGGCTAA+AGG | 0.472662 | 8.2:+20944739 | MS.gene011426:CDS |
| CTTCTTCCAAATCTCTTGGC+GGG | 0.472849 | 8.2:-20945717 | None:intergenic |
| GTTTGTCTATATCGGCTAAA+GGG | 0.489431 | 8.2:+20944740 | MS.gene011426:CDS |
| CTTCTCATTTGGGGAAAAGA+GGG | 0.492520 | 8.2:+20944557 | MS.gene011426:CDS |
| AATAAGCTATATGTTCCTGC+TGG | 0.503889 | 8.2:-20945672 | None:intergenic |
| AGTTTGGTTGGATAGAAGCA+TGG | 0.503977 | 8.2:+20944708 | MS.gene011426:CDS |
| ATTATTGTAGAAAGTTTGGT+TGG | 0.506585 | 8.2:+20944696 | MS.gene011426:intron |
| TCTTACCTTGATTCTTCAGT+GGG | 0.519553 | 8.2:-20944808 | None:intergenic |
| ACACAGAACATGTTCATGGT+TGG | 0.524349 | 8.2:+20945748 | MS.gene011426:CDS |
| GTATCCTAGTGAGTTTAGAA+AGG | 0.524884 | 8.2:+20945983 | MS.gene011426:CDS |
| GATCATCTGAAGTCCATAGT+TGG | 0.529126 | 8.2:-20945791 | None:intergenic |
| ATTGAGTTCCCATTTCCAGC+AGG | 0.540368 | 8.2:+20945657 | MS.gene011426:CDS |
| GTTTGGTTGGATAGAAGCAT+GGG | 0.542266 | 8.2:+20944709 | MS.gene011426:CDS |
| ATTGATTGCACACACACTAA+AGG | 0.551213 | 8.2:+20945933 | MS.gene011426:CDS |
| TTAACCTTTCTAAACTCACT+AGG | 0.563266 | 8.2:-20945987 | None:intergenic |
| ATCTTACCTTGATTCTTCAG+TGG | 0.563619 | 8.2:-20944809 | None:intergenic |
| ACAAATCTGGTGGTTTGAAG+TGG | 0.565964 | 8.2:+20945626 | MS.gene011426:CDS |
| ATCTTCAACCACAAAATCGC+CGG | 0.570051 | 8.2:-20945871 | None:intergenic |
| CTAAAGGGTTGTCAATAACT+GGG | 0.571485 | 8.2:+20944755 | MS.gene011426:CDS |
| ATATTCCCACTGAAGAATCA+AGG | 0.574725 | 8.2:+20944803 | MS.gene011426:CDS |
| ATTATAACATCATAATTAGA+GGG | 0.581280 | 8.2:-20944505 | None:intergenic |
| CAACCACAAAATCGCCGGCA+TGG | 0.585784 | 8.2:-20945866 | None:intergenic |
| GAAGCTAATTTGCAAATCTG+AGG | 0.595553 | 8.2:-20944424 | None:intergenic |
| CGTATCTCCAACAAATCTGG+TGG | 0.613155 | 8.2:+20945616 | MS.gene011426:CDS |
| GCTAATTTGCAAATCTGAGG+AGG | 0.616624 | 8.2:-20944421 | None:intergenic |
| AAATGGCGCTATTACCATGC+CGG | 0.633820 | 8.2:+20945852 | MS.gene011426:CDS |
| TACTTTCGATGAAGGAACCA+AGG | 0.641635 | 8.2:+20944606 | MS.gene011426:CDS |
| GATTGCACACACACTAAAGG+TGG | 0.653493 | 8.2:+20945936 | MS.gene011426:CDS |
| AAGAAGCACCATGAAAAGCA+CGG | 0.655921 | 8.2:-20944453 | None:intergenic |
| ATCTGGTGGTTTGAAGTGGA+CGG | 0.666571 | 8.2:+20945630 | MS.gene011426:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACTAAAATTAATTAAAAG+AGG | - | chr8.2:20945137-20945156 | None:intergenic | 10.0% |
| !! | AATTATAACATCATAATTAG+AGG | - | chr8.2:20944509-20944528 | None:intergenic | 15.0% |
| !! | ATAATTCAAAAAATCTTTGA+TGG | + | chr8.2:20944523-20944542 | MS.gene011426:CDS | 15.0% |
| !! | ATTATAACATCATAATTAGA+GGG | - | chr8.2:20944508-20944527 | None:intergenic | 15.0% |
| !! | TATTATTATTGTAGAAAGTT+TGG | + | chr8.2:20944692-20944711 | MS.gene011426:intron | 15.0% |
| !!! | TTGAATTGATTTTATTGATT+TGG | + | chr8.2:20945005-20945024 | MS.gene011426:intron | 15.0% |
| !!! | TTGATTTTCTTTTATTATTC+TGG | + | chr8.2:20945410-20945429 | MS.gene011426:intron | 15.0% |
| !! | GAAATTAAAAAGACATAACT+TGG | - | chr8.2:20945492-20945511 | None:intergenic | 20.0% |
| !!! | TTAGTTTGGAAATAAAGTTT+TGG | + | chr8.2:20945547-20945566 | MS.gene011426:intron | 20.0% |
| !!! | TTATAGGTAGAATTGATTTT+GGG | + | chr8.2:20945193-20945212 | MS.gene011426:intron | 20.0% |
| !!! | TTTATGTTAATTTGTTACCT+TGG | - | chr8.2:20944626-20944645 | None:intergenic | 20.0% |
| ! | AAAATTATGCTTGGAGAATT+TGG | + | chr8.2:20945083-20945102 | MS.gene011426:intron | 25.0% |
| ! | ATTATTGTAGAAAGTTTGGT+TGG | + | chr8.2:20944696-20944715 | MS.gene011426:intron | 25.0% |
| ! | GCAAATGATAAAGATAACAT+TGG | - | chr8.2:20945580-20945599 | None:intergenic | 25.0% |
| ! | TAAAGTGTGTTTGTCTATAT+CGG | + | chr8.2:20944732-20944751 | MS.gene011426:CDS | 25.0% |
| ! | TATTCTTCCGAATACATTTA+GGG | + | chr8.2:20945691-20945710 | MS.gene011426:CDS | 25.0% |
| ! | TTATTCTTCCGAATACATTT+AGG | + | chr8.2:20945690-20945709 | MS.gene011426:CDS | 25.0% |
| ! | TTTACGGAAAAAATTATGCT+TGG | + | chr8.2:20945074-20945093 | MS.gene011426:intron | 25.0% |
| ! | TTTATGTTTGCATGCATTTA+CGG | + | chr8.2:20945058-20945077 | MS.gene011426:intron | 25.0% |
| !! | CTATTAGTGTTGAATTAGTT+TGG | + | chr8.2:20945533-20945552 | MS.gene011426:intron | 25.0% |
| !! | TTTCATGTTCTAGTGTATTT+TGG | + | chr8.2:20944927-20944946 | MS.gene011426:intron | 25.0% |
| !!! | AAAATCGTTGCTTTTGTATA+TGG | + | chr8.2:20944644-20944663 | MS.gene011426:intron | 25.0% |
| !!! | CTTATAGGTAGAATTGATTT+TGG | + | chr8.2:20945192-20945211 | MS.gene011426:intron | 25.0% |
| !!! | TATAGGTAGAATTGATTTTG+GGG | + | chr8.2:20945194-20945213 | MS.gene011426:intron | 25.0% |
| AAAGCTAAGTATTTGACCTT+TGG | - | chr8.2:20945339-20945358 | None:intergenic | 30.0% | |
| AGCTAGAAATGATAGCTTAT+AGG | + | chr8.2:20945177-20945196 | MS.gene011426:intron | 30.0% | |
| ATCATAATTAGAGGGAAGTT+TGG | - | chr8.2:20944500-20944519 | None:intergenic | 30.0% | |
| GAAGAGAAAGATATTGATGA+AGG | + | chr8.2:20945381-20945400 | MS.gene011426:intron | 30.0% | |
| GACAGCAAATATGTTATGTT+TGG | - | chr8.2:20945245-20945264 | None:intergenic | 30.0% | |
| TGTGAACTATGAAGTTCAAA+GGG | + | chr8.2:20944869-20944888 | MS.gene011426:intron | 30.0% | |
| TTAACCTTTCTAAACTCACT+AGG | - | chr8.2:20945990-20946009 | None:intergenic | 30.0% | |
| ! | AATTCTCCTAAACTTGGTTT+TGG | - | chr8.2:20944361-20944380 | None:intergenic | 30.0% |
| ! | AGCTGTTATAATGGAATACT+TGG | + | chr8.2:20944396-20944415 | MS.gene011426:CDS | 30.0% |
| ! | TAACCAAAACTGATTCTAAG+AGG | + | chr8.2:20945278-20945297 | MS.gene011426:intron | 30.0% |
| ! | TCTTCTTTTCCTTCTCATTT+GGG | + | chr8.2:20944547-20944566 | MS.gene011426:CDS | 30.0% |
| ! | TTCTTCTTTTCCTTCTCATT+TGG | + | chr8.2:20944546-20944565 | MS.gene011426:CDS | 30.0% |
| !! | TTCTTTGGCTGATTTTGTTT+GGG | + | chr8.2:20944471-20944490 | MS.gene011426:CDS | 30.0% |
| !!! | ATCCATTTTTTCCCATGTTT+AGG | + | chr8.2:20945312-20945331 | MS.gene011426:intron | 30.0% |
| !!! | GAAACTAGACTTGCTAATTT+TGG | - | chr8.2:20945514-20945533 | None:intergenic | 30.0% |
| !!! | TCATCGCAATGTTTTTTGAA+AGG | + | chr8.2:20945822-20945841 | MS.gene011426:CDS | 30.0% |
| !!! | TTTTGGTGATGATGATGATT+GGG | - | chr8.2:20944344-20944363 | None:intergenic | 30.0% |
| AAGCTGTGTAGCTGTTATAA+TGG | + | chr8.2:20944387-20944406 | MS.gene011426:CDS | 35.0% | |
| AATAAGCTATATGTTCCTGC+TGG | - | chr8.2:20945675-20945694 | None:intergenic | 35.0% | |
| AGCTTCAATACTTTCGATGA+AGG | + | chr8.2:20944598-20944617 | MS.gene011426:CDS | 35.0% | |
| ATATTCCCACTGAAGAATCA+AGG | + | chr8.2:20944803-20944822 | MS.gene011426:CDS | 35.0% | |
| ATCTTACCTTGATTCTTCAG+TGG | - | chr8.2:20944812-20944831 | None:intergenic | 35.0% | |
| ATTGATTGCACACACACTAA+AGG | + | chr8.2:20945933-20945952 | MS.gene011426:CDS | 35.0% | |
| CTAAAGGGTTGTCAATAACT+GGG | + | chr8.2:20944755-20944774 | MS.gene011426:CDS | 35.0% | |
| GACCTAAACATGGGAAAAAA+TGG | - | chr8.2:20945317-20945336 | None:intergenic | 35.0% | |
| GTATCCTAGTGAGTTTAGAA+AGG | + | chr8.2:20945983-20946002 | MS.gene011426:CDS | 35.0% | |
| GTGAACTATGAAGTTCAAAG+GGG | + | chr8.2:20944870-20944889 | MS.gene011426:intron | 35.0% | |
| GTGTGAACTATGAAGTTCAA+AGG | + | chr8.2:20944868-20944887 | MS.gene011426:intron | 35.0% | |
| TATATGTTCCTGCTGGAAAT+GGG | - | chr8.2:20945668-20945687 | None:intergenic | 35.0% | |
| TCATCACCAAAACCAAGTTT+AGG | + | chr8.2:20944352-20944371 | MS.gene011426:CDS | 35.0% | |
| TCTGGTAATTCTCCTAAACT+TGG | - | chr8.2:20944367-20944386 | None:intergenic | 35.0% | |
| TCTTACCTTGATTCTTCAGT+GGG | - | chr8.2:20944811-20944830 | None:intergenic | 35.0% | |
| TTGATTCTTCAGTGGGAATA+TGG | - | chr8.2:20944804-20944823 | None:intergenic | 35.0% | |
| ! | AAATTCTGTTGGCGATTTTC+GGG | + | chr8.2:20944956-20944975 | MS.gene011426:intron | 35.0% |
| ! | CTTCTTTTCCTTCTCATTTG+GGG | + | chr8.2:20944548-20944567 | MS.gene011426:CDS | 35.0% |
| ! | GAAATTCTGTTGGCGATTTT+CGG | + | chr8.2:20944955-20944974 | MS.gene011426:intron | 35.0% |
| ! | GAAGCTAATTTGCAAATCTG+AGG | - | chr8.2:20944427-20944446 | None:intergenic | 35.0% |
| ! | GGATTGATGATCGAAGATAT+TGG | + | chr8.2:20944776-20944795 | MS.gene011426:CDS | 35.0% |
| ! | GTTTGTCTATATCGGCTAAA+GGG | + | chr8.2:20944740-20944759 | MS.gene011426:CDS | 35.0% |
| ! | TGTTTGTCTATATCGGCTAA+AGG | + | chr8.2:20944739-20944758 | MS.gene011426:CDS | 35.0% |
| !! | CTTCTTTGGCTGATTTTGTT+TGG | + | chr8.2:20944470-20944489 | MS.gene011426:CDS | 35.0% |
| !! | TTTGGTCTTGGAAATTCTGT+TGG | + | chr8.2:20944945-20944964 | MS.gene011426:intron | 35.0% |
| !! | TTTTGAAAGGTCCAGGTAAA+TGG | + | chr8.2:20945835-20945854 | MS.gene011426:CDS | 35.0% |
| !!! | CAATGTTTTTTGAAAGGTCC+AGG | + | chr8.2:20945828-20945847 | MS.gene011426:CDS | 35.0% |
| !!! | GTTCTAGTGTATTTTGGTCT+TGG | + | chr8.2:20944933-20944952 | MS.gene011426:intron | 35.0% |
| !!! | GTTTTGGTGATGATGATGAT+TGG | - | chr8.2:20944345-20944364 | None:intergenic | 35.0% |
| AACCCTTCTTCCAAATCTCT+TGG | - | chr8.2:20945724-20945743 | None:intergenic | 40.0% | |
| ACAAATCTGGTGGTTTGAAG+TGG | + | chr8.2:20945626-20945645 | MS.gene011426:CDS | 40.0% | |
| ACACAGAACATGTTCATGGT+TGG | + | chr8.2:20945748-20945767 | MS.gene011426:CDS | 40.0% | |
| AGCCTGTTAGATTCCAACTA+TGG | + | chr8.2:20945778-20945797 | MS.gene011426:CDS | 40.0% | |
| AGTTTGGTTGGATAGAAGCA+TGG | + | chr8.2:20944708-20944727 | MS.gene011426:CDS | 40.0% | |
| ATAACAGCTACACAGCTTTC+TGG | - | chr8.2:20944385-20944404 | None:intergenic | 40.0% | |
| ATCTTCAACCACAAAATCGC+CGG | - | chr8.2:20945874-20945893 | None:intergenic | 40.0% | |
| CACAGAACATGTTCATGGTT+GGG | + | chr8.2:20945749-20945768 | MS.gene011426:CDS | 40.0% | |
| CGGGTTTCCCTAAATGTATT+CGG | - | chr8.2:20945701-20945720 | None:intergenic | 40.0% | |
| CTATATGTTCCTGCTGGAAA+TGG | - | chr8.2:20945669-20945688 | None:intergenic | 40.0% | |
| CTTCAAACCACCAGATTTGT+TGG | - | chr8.2:20945626-20945645 | None:intergenic | 40.0% | |
| CTTCTCATTTGGGGAAAAGA+GGG | + | chr8.2:20944557-20944576 | MS.gene011426:CDS | 40.0% | |
| GCTAAAGGGTTGTCAATAAC+TGG | + | chr8.2:20944754-20944773 | MS.gene011426:CDS | 40.0% | |
| GGAAAAAATGGATCCACCTT+TGG | - | chr8.2:20945305-20945324 | None:intergenic | 40.0% | |
| GTCCATAGTTGGAATCTAAC+AGG | - | chr8.2:20945783-20945802 | None:intergenic | 40.0% | |
| TACTTTCGATGAAGGAACCA+AGG | + | chr8.2:20944606-20944625 | MS.gene011426:CDS | 40.0% | |
| TGACCTTTGGACCTAAACAT+GGG | - | chr8.2:20945326-20945345 | None:intergenic | 40.0% | |
| TGCAACACAGAACATGTTCA+TGG | + | chr8.2:20945744-20945763 | MS.gene011426:CDS | 40.0% | |
| TTGACCTTTGGACCTAAACA+TGG | - | chr8.2:20945327-20945346 | None:intergenic | 40.0% | |
| TTGCGTATCTCCAACAAATC+TGG | + | chr8.2:20945613-20945632 | MS.gene011426:CDS | 40.0% | |
| TTTCCCATGTTTAGGTCCAA+AGG | + | chr8.2:20945320-20945339 | MS.gene011426:intron | 40.0% | |
| ! | ACTGATTCTAAGAGGTCCAA+AGG | + | chr8.2:20945286-20945305 | MS.gene011426:intron | 40.0% |
| ! | GATCATCTGAAGTCCATAGT+TGG | - | chr8.2:20945794-20945813 | None:intergenic | 40.0% |
| ! | GCTAATTTGCAAATCTGAGG+AGG | - | chr8.2:20944424-20944443 | None:intergenic | 40.0% |
| ! | GGACCTCTTAGAATCAGTTT+TGG | - | chr8.2:20945284-20945303 | None:intergenic | 40.0% |
| ! | GTTTGGTTGGATAGAAGCAT+GGG | + | chr8.2:20944709-20944728 | MS.gene011426:CDS | 40.0% |
| ! | TGCTTTTCATGGTGCTTCTT+TGG | + | chr8.2:20944456-20944475 | MS.gene011426:CDS | 40.0% |
| !! | AAGAAGCACCATGAAAAGCA+CGG | - | chr8.2:20944456-20944475 | None:intergenic | 40.0% |
| !! | GCTAGAATCATTTCTGAGGT+TGG | + | chr8.2:20945216-20945235 | MS.gene011426:intron | 40.0% |
| AAATGGCGCTATTACCATGC+CGG | + | chr8.2:20945852-20945871 | MS.gene011426:CDS | 45.0% | |
| ATTGAGTTCCCATTTCCAGC+AGG | + | chr8.2:20945657-20945676 | MS.gene011426:CDS | 45.0% | |
| CCTTCTCATTTGGGGAAAAG+AGG | + | chr8.2:20944556-20944575 | MS.gene011426:CDS | 45.0% | |
| CCTTCTTCCAAATCTCTTGG+CGG | - | chr8.2:20945721-20945740 | None:intergenic | 45.0% | |
| CGCCAAGAGATTTGGAAGAA+GGG | + | chr8.2:20945719-20945738 | MS.gene011426:CDS | 45.0% | |
| CGTATCTCCAACAAATCTGG+TGG | + | chr8.2:20945616-20945635 | MS.gene011426:CDS | 45.0% | |
| CTTCTTCCAAATCTCTTGGC+GGG | - | chr8.2:20945720-20945739 | None:intergenic | 45.0% | |
| GATTGCACACACACTAAAGG+TGG | + | chr8.2:20945936-20945955 | MS.gene011426:CDS | 45.0% | |
| TGGGGCTAGAATCATTTCTG+AGG | + | chr8.2:20945212-20945231 | MS.gene011426:intron | 45.0% | |
| TGGTAATAGCGCCATTTACC+TGG | - | chr8.2:20945849-20945868 | None:intergenic | 45.0% | |
| ! | ATCTGGTGGTTTGAAGTGGA+CGG | + | chr8.2:20945630-20945649 | MS.gene011426:CDS | 45.0% |
| ! | CCTCTTTTCCCCAAATGAGA+AGG | - | chr8.2:20944559-20944578 | None:intergenic | 45.0% |
| ! | GATTCTAAGAGGTCCAAAGG+TGG | + | chr8.2:20945289-20945308 | MS.gene011426:intron | 45.0% |
| ! | GGCGATTTTGTGGTTGAAGA+TGG | + | chr8.2:20945873-20945892 | MS.gene011426:CDS | 45.0% |
| ! | TCTCTCAACCGTGCTTTTCA+TGG | + | chr8.2:20944445-20944464 | MS.gene011426:CDS | 45.0% |
| CCGCCAAGAGATTTGGAAGA+AGG | + | chr8.2:20945718-20945737 | MS.gene011426:CDS | 50.0% | |
| TAACTTGGCGTCATGATCCC+CGG | - | chr8.2:20945477-20945496 | None:intergenic | 50.0% | |
| ! | TTACCATGCCGGCGATTTTG+TGG | + | chr8.2:20945863-20945882 | MS.gene011426:CDS | 50.0% |
| !!! | GTTGGCGATTTTCGGGTTTG+CGG | + | chr8.2:20944963-20944982 | MS.gene011426:intron | 50.0% |
| AGTTGCGACAGCTAGTACCG+GGG | + | chr8.2:20945457-20945476 | MS.gene011426:intron | 55.0% | |
| CAACCACAAAATCGCCGGCA+TGG | - | chr8.2:20945869-20945888 | None:intergenic | 55.0% | |
| CAGTTGCGACAGCTAGTACC+GGG | + | chr8.2:20945456-20945475 | MS.gene011426:intron | 55.0% | |
| CCAGTTGCGACAGCTAGTAC+CGG | + | chr8.2:20945455-20945474 | MS.gene011426:intron | 55.0% | |
| CGGTACTAGCTGTCGCAACT+GGG | - | chr8.2:20945457-20945476 | None:intergenic | 55.0% | |
| GGGAAACCCGCCAAGAGATT+TGG | + | chr8.2:20945711-20945730 | MS.gene011426:CDS | 55.0% | |
| TGTCGCAACTGGGATCGCAA+TGG | - | chr8.2:20945447-20945466 | None:intergenic | 55.0% | |
| CCGGTACTAGCTGTCGCAAC+TGG | - | chr8.2:20945458-20945477 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 20944316 | 20946031 | 20944316 | ID=MS.gene011426 |
| chr8.2 | mRNA | 20944316 | 20946031 | 20944316 | ID=MS.gene011426.t1;Parent=MS.gene011426 |
| chr8.2 | exon | 20944316 | 20944627 | 20944316 | ID=MS.gene011426.t1.exon1;Parent=MS.gene011426.t1 |
| chr8.2 | CDS | 20944316 | 20944627 | 20944316 | ID=cds.MS.gene011426.t1;Parent=MS.gene011426.t1 |
| chr8.2 | exon | 20944706 | 20944824 | 20944706 | ID=MS.gene011426.t1.exon2;Parent=MS.gene011426.t1 |
| chr8.2 | CDS | 20944706 | 20944824 | 20944706 | ID=cds.MS.gene011426.t1;Parent=MS.gene011426.t1 |
| chr8.2 | exon | 20945602 | 20946031 | 20945602 | ID=MS.gene011426.t1.exon3;Parent=MS.gene011426.t1 |
| chr8.2 | CDS | 20945602 | 20946031 | 20945602 | ID=cds.MS.gene011426.t1;Parent=MS.gene011426.t1 |
| Gene Sequence |
| Protein sequence |
