Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015544.t1 | AES94102.1 | 97.2 | 286 | 5 | 1 | 1 | 286 | 1 | 283 | 1.60E-164 | 588.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015544.t1 | Q9LN77 | 67.2 | 259 | 83 | 2 | 20 | 277 | 28 | 285 | 1.9e-102 | 373.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015544.t1 | G7KDG7 | 97.2 | 286 | 5 | 1 | 1 | 286 | 1 | 283 | 1.1e-164 | 588.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015544 | MS.gene020575 | PPI |
| MS.gene015544 | MS.gene34457 | PPI |
| MS.gene054425 | MS.gene015544 | PPI |
| MS.gene41397 | MS.gene015544 | PPI |
| MS.gene015544 | MS.gene007330 | PPI |
| MS.gene22796 | MS.gene015544 | PPI |
| MS.gene40823 | MS.gene015544 | PPI |
| MS.gene015544 | MS.gene006331 | PPI |
| MS.gene015544 | MS.gene072532 | PPI |
| MS.gene007614 | MS.gene015544 | PPI |
| MS.gene015544 | MS.gene49051 | PPI |
| MS.gene015544 | MS.gene050935 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015544.t1 | MTR_5g010800 | 97.203 | 286 | 5 | 1 | 1 | 286 | 1 | 283 | 0.0 | 577 |
| MS.gene015544.t1 | MTR_4g102770 | 76.208 | 269 | 61 | 2 | 20 | 286 | 19 | 286 | 6.67e-158 | 441 |
| MS.gene015544.t1 | MTR_0002s0020 | 56.401 | 289 | 117 | 3 | 1 | 281 | 1 | 288 | 5.11e-119 | 343 |
| MS.gene015544.t1 | MTR_7g103380 | 56.314 | 293 | 112 | 5 | 1 | 280 | 1 | 290 | 1.17e-112 | 327 |
| MS.gene015544.t1 | MTR_1g101390 | 57.308 | 260 | 109 | 2 | 20 | 278 | 28 | 286 | 8.95e-112 | 325 |
| MS.gene015544.t1 | MTR_0113s0040 | 55.344 | 262 | 115 | 2 | 16 | 276 | 18 | 278 | 1.87e-110 | 321 |
| MS.gene015544.t1 | MTR_7g112560 | 24.453 | 274 | 173 | 8 | 23 | 278 | 4 | 261 | 9.90e-28 | 108 |
| MS.gene015544.t1 | MTR_4g023570 | 25.379 | 264 | 161 | 8 | 23 | 277 | 4 | 240 | 4.77e-24 | 97.8 |
| MS.gene015544.t1 | MTR_1g079260 | 34.722 | 144 | 91 | 3 | 22 | 164 | 6 | 147 | 5.22e-22 | 93.2 |
| MS.gene015544.t1 | MTR_1g079180 | 34.932 | 146 | 91 | 3 | 22 | 164 | 6 | 150 | 2.18e-21 | 91.3 |
| MS.gene015544.t1 | MTR_1g079140 | 33.117 | 154 | 96 | 4 | 13 | 161 | 6 | 157 | 6.22e-21 | 90.9 |
| MS.gene015544.t1 | MTR_1g079230 | 33.562 | 146 | 90 | 4 | 22 | 164 | 6 | 147 | 5.05e-19 | 85.1 |
| MS.gene015544.t1 | MTR_1g079380 | 32.667 | 150 | 94 | 4 | 18 | 164 | 2 | 147 | 1.23e-18 | 84.3 |
| MS.gene015544.t1 | MTR_1g079370 | 25.940 | 266 | 184 | 6 | 18 | 273 | 2 | 264 | 2.16e-18 | 83.2 |
| MS.gene015544.t1 | MTR_7g112550 | 22.414 | 290 | 185 | 9 | 15 | 273 | 2 | 282 | 2.52e-18 | 83.2 |
| MS.gene015544.t1 | MTR_1g079200 | 26.236 | 263 | 178 | 9 | 22 | 273 | 6 | 263 | 3.58e-18 | 82.4 |
| MS.gene015544.t1 | MTR_1g079460 | 25.725 | 276 | 169 | 10 | 22 | 275 | 6 | 267 | 1.73e-17 | 80.5 |
| MS.gene015544.t1 | MTR_1g100597 | 31.250 | 144 | 96 | 3 | 22 | 164 | 6 | 147 | 2.05e-17 | 80.5 |
| MS.gene015544.t1 | MTR_1g079850 | 31.973 | 147 | 95 | 3 | 22 | 164 | 6 | 151 | 4.77e-17 | 79.7 |
| MS.gene015544.t1 | MTR_1g083580 | 28.049 | 164 | 112 | 4 | 18 | 176 | 6 | 168 | 5.92e-16 | 76.6 |
| MS.gene015544.t1 | MTR_1g079410 | 29.870 | 154 | 97 | 4 | 18 | 164 | 6 | 155 | 1.02e-15 | 75.9 |
| MS.gene015544.t1 | MTR_3g452600 | 31.944 | 144 | 91 | 4 | 20 | 161 | 10 | 148 | 1.47e-14 | 72.4 |
| MS.gene015544.t1 | MTR_1g079400 | 28.571 | 161 | 102 | 4 | 12 | 164 | 4 | 159 | 4.71e-14 | 71.2 |
| MS.gene015544.t1 | MTR_1g100613 | 31.008 | 129 | 86 | 3 | 37 | 164 | 6 | 132 | 5.33e-14 | 70.5 |
| MS.gene015544.t1 | MTR_1g079250 | 30.872 | 149 | 93 | 5 | 22 | 164 | 6 | 150 | 1.88e-13 | 69.7 |
| MS.gene015544.t1 | MTR_1g079350 | 28.431 | 204 | 120 | 7 | 22 | 216 | 6 | 192 | 8.80e-13 | 67.4 |
| MS.gene015544.t1 | MTR_3g450990 | 31.852 | 135 | 83 | 5 | 20 | 152 | 10 | 137 | 6.46e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015544.t1 | AT1G12710 | 67.181 | 259 | 83 | 2 | 20 | 277 | 28 | 285 | 5.95e-128 | 365 |
| MS.gene015544.t1 | AT1G12710 | 57.807 | 301 | 83 | 3 | 20 | 277 | 28 | 327 | 6.73e-119 | 344 |
| MS.gene015544.t1 | AT3G61060 | 58.242 | 273 | 111 | 3 | 9 | 279 | 14 | 285 | 5.94e-118 | 340 |
| MS.gene015544.t1 | AT3G61060 | 58.029 | 274 | 111 | 4 | 9 | 279 | 14 | 286 | 2.10e-116 | 336 |
| MS.gene015544.t1 | AT1G63090 | 59.507 | 284 | 107 | 3 | 1 | 277 | 1 | 283 | 1.50e-114 | 332 |
| MS.gene015544.t1 | AT3G53000 | 53.333 | 285 | 120 | 3 | 1 | 273 | 1 | 284 | 1.08e-103 | 304 |
| MS.gene015544.t1 | AT5G52120 | 48.772 | 285 | 137 | 3 | 1 | 277 | 1 | 284 | 4.95e-98 | 290 |
| MS.gene015544.t1 | AT2G02360 | 34.591 | 159 | 94 | 4 | 9 | 164 | 3 | 154 | 8.89e-27 | 105 |
| MS.gene015544.t1 | AT2G02230 | 31.792 | 173 | 108 | 6 | 17 | 184 | 29 | 196 | 1.32e-23 | 98.6 |
| MS.gene015544.t1 | AT2G02240 | 34.752 | 141 | 86 | 3 | 23 | 162 | 64 | 199 | 1.62e-22 | 95.5 |
| MS.gene015544.t1 | AT1G09155 | 24.823 | 282 | 184 | 7 | 23 | 277 | 3 | 283 | 3.86e-22 | 94.0 |
| MS.gene015544.t1 | AT2G02340 | 32.927 | 164 | 100 | 5 | 18 | 176 | 34 | 192 | 4.74e-22 | 94.0 |
| MS.gene015544.t1 | AT2G02350 | 36.054 | 147 | 83 | 5 | 16 | 158 | 20 | 159 | 9.03e-22 | 92.8 |
| MS.gene015544.t1 | AT2G02250 | 30.667 | 150 | 95 | 3 | 15 | 161 | 42 | 185 | 1.71e-21 | 92.4 |
| MS.gene015544.t1 | AT2G02320 | 31.285 | 179 | 110 | 6 | 3 | 176 | 22 | 192 | 4.04e-20 | 88.6 |
| MS.gene015544.t1 | AT5G24560 | 26.347 | 167 | 112 | 4 | 22 | 187 | 5 | 161 | 1.45e-18 | 82.0 |
| MS.gene015544.t1 | AT2G02310 | 31.544 | 149 | 92 | 4 | 18 | 163 | 43 | 184 | 1.66e-18 | 84.0 |
| MS.gene015544.t1 | AT1G56250 | 24.232 | 293 | 164 | 8 | 23 | 273 | 4 | 280 | 9.63e-17 | 79.0 |
| MS.gene015544.t1 | AT1G56240 | 24.028 | 283 | 185 | 5 | 23 | 277 | 4 | 284 | 2.98e-16 | 77.4 |
| MS.gene015544.t1 | AT1G80110 | 24.242 | 264 | 181 | 9 | 20 | 273 | 1 | 255 | 4.96e-16 | 76.3 |
| MS.gene015544.t1 | AT2G02300 | 26.891 | 238 | 141 | 10 | 16 | 242 | 30 | 245 | 6.89e-13 | 67.8 |
Find 71 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGATTTACCAATCAATT+TGG | 0.149392 | 5.4:+5057022 | MS.gene015544:CDS |
| TGGTAAATCATGAAAGATTT+TGG | 0.209100 | 5.4:-5057012 | None:intergenic |
| ATTGAAGCAACGCAACTTTC+AGG | 0.221705 | 5.4:-5056864 | None:intergenic |
| CTTCTTCTGCTGATTTCGTT+TGG | 0.259520 | 5.4:+5056952 | MS.gene015544:CDS |
| GGTTCAACCGGTTCAACTTT+AGG | 0.271212 | 5.4:+5056834 | MS.gene015544:CDS |
| CTGTATGTCCCGGCTGGAAA+TGG | 0.317696 | 5.4:-5059042 | None:intergenic |
| TTCTTCTGCTGATTTCGTTT+GGG | 0.325116 | 5.4:+5056953 | MS.gene015544:CDS |
| CACTAAAGGTGGTCTGTGTT+TGG | 0.348141 | 5.4:+5059323 | MS.gene015544:CDS |
| CATGATTTACCAATCAATTT+GGG | 0.351067 | 5.4:+5057023 | MS.gene015544:CDS |
| TTTGTTGTGTGCAGAAAGTT+TGG | 0.359355 | 5.4:+5057776 | MS.gene015544:intron |
| AGCCTGTGCGATTCCAACTT+TGG | 0.369551 | 5.4:+5059154 | MS.gene015544:CDS |
| TTCTGAAAGGAACTGGCAAT+TGG | 0.389942 | 5.4:+5059211 | MS.gene015544:CDS |
| TGCTTCAATCATCGGTTACA+TGG | 0.409316 | 5.4:+5056878 | MS.gene015544:CDS |
| TTATTCTTCAGAATACATCT+AGG | 0.422202 | 5.4:+5059066 | MS.gene015544:CDS |
| TCCAACCAAACCGGTTCAAC+CGG | 0.434266 | 5.4:+5056822 | MS.gene015544:CDS |
| TAAAGTTGAACCGGTTGAAC+CGG | 0.438212 | 5.4:-5056832 | None:intergenic |
| ACGACGTCCAAACCTCTTGT+AGG | 0.439552 | 5.4:-5059094 | None:intergenic |
| GGGCAAGCCTACAAGAGGTT+TGG | 0.441598 | 5.4:+5059087 | MS.gene015544:CDS |
| GAATTGATGATAGAAGATAT+TGG | 0.446914 | 5.4:+5057863 | MS.gene015544:CDS |
| CGACTTAATACTATTGATGA+TGG | 0.447327 | 5.4:+5057074 | MS.gene015544:CDS |
| TTGAACCGGTTGAACCGGTT+TGG | 0.448850 | 5.4:-5056827 | None:intergenic |
| AGTCATAGAGAATTTGACTT+TGG | 0.459733 | 5.4:-5059283 | None:intergenic |
| ATATCATCACTGAAGAATCT+AGG | 0.462039 | 5.4:+5057890 | MS.gene015544:CDS |
| AGCCACGGGCAAGCTTTGCT+TGG | 0.464990 | 5.4:+5057807 | MS.gene015544:CDS |
| TTCCAACTTTGGACTTCAGA+TGG | 0.477540 | 5.4:+5059165 | MS.gene015544:CDS |
| TAATTCACCTAAAGTTGAAC+CGG | 0.483165 | 5.4:-5056841 | None:intergenic |
| TTGCATACCTTCAGCATACC+TGG | 0.490977 | 5.4:+5058989 | MS.gene015544:CDS |
| TGTATGTCCCGGCTGGAAAT+GGG | 0.498240 | 5.4:-5059041 | None:intergenic |
| TCATTTCGATCCAACCAAAC+CGG | 0.498725 | 5.4:+5056813 | MS.gene015544:CDS |
| TGCAACACTGAACATGTTCA+TGG | 0.501094 | 5.4:+5059120 | MS.gene015544:CDS |
| CCTGGTGGTTTGAAGTGGAC+GGG | 0.501663 | 5.4:+5059007 | MS.gene015544:CDS |
| AACAAGGGACTATCAGTACT+TGG | 0.501726 | 5.4:+5057841 | MS.gene015544:CDS |
| GGTGATTTCACCGTTGAGGA+TGG | 0.503816 | 5.4:+5059249 | MS.gene015544:CDS |
| CTTGGCTATATCAGCTAACA+AGG | 0.503821 | 5.4:+5057825 | MS.gene015544:CDS |
| AGTTGCGTTGCTTCAATCAT+CGG | 0.506036 | 5.4:+5056870 | MS.gene015544:CDS |
| ACCGGTTGAACCGGTTTGGT+TGG | 0.509700 | 5.4:-5056823 | None:intergenic |
| ATTGATTGCACGCACACTAA+AGG | 0.512444 | 5.4:+5059309 | MS.gene015544:CDS |
| CACTGAACATGTTCATGGGT+GGG | 0.526344 | 5.4:+5059125 | MS.gene015544:CDS |
| CAGTTCCTTTCAGAAAACAC+TGG | 0.526894 | 5.4:-5059203 | None:intergenic |
| GCCCATCTGAAGTCCAAAGT+TGG | 0.536214 | 5.4:-5059167 | None:intergenic |
| CCCGTCCACTTCAAACCACC+AGG | 0.538040 | 5.4:-5059007 | None:intergenic |
| AATAAGCTGTATGTCCCGGC+TGG | 0.538928 | 5.4:-5059048 | None:intergenic |
| TTGACTTCCCATTTCCAGCC+GGG | 0.542798 | 5.4:+5059034 | MS.gene015544:CDS |
| TCCAACTTTGGACTTCAGAT+GGG | 0.543088 | 5.4:+5059166 | MS.gene015544:CDS |
| GCATACCTGGTGGTTTGAAG+TGG | 0.546087 | 5.4:+5059002 | MS.gene015544:CDS |
| AGGAGAAGATGGTAATTTGT+CGG | 0.546308 | 5.4:-5056987 | None:intergenic |
| GTGATTTCACCGTTGAGGAT+GGG | 0.546700 | 5.4:+5059250 | MS.gene015544:CDS |
| TATTCTTCAGAATACATCTA+GGG | 0.555396 | 5.4:+5059067 | MS.gene015544:CDS |
| ACCTGGTGGTTTGAAGTGGA+CGG | 0.561016 | 5.4:+5059006 | MS.gene015544:CDS |
| GTTTGGATTGATAGAGCCAC+GGG | 0.562866 | 5.4:+5057793 | MS.gene015544:CDS |
| GAAGAATAAGCTGTATGTCC+CGG | 0.575375 | 5.4:-5059052 | None:intergenic |
| GTCCAAAGTTGGAATCGCAC+AGG | 0.578305 | 5.4:-5059156 | None:intergenic |
| TGCAGGTGATTTCACCGTTG+AGG | 0.581687 | 5.4:+5059245 | MS.gene015544:CDS |
| CTGGTGGTTTGAAGTGGACG+GGG | 0.591797 | 5.4:+5059008 | MS.gene015544:CDS |
| GTTGACTTCCCATTTCCAGC+CGG | 0.592053 | 5.4:+5059033 | MS.gene015544:CDS |
| AGTTCCTTTCAGAAAACACT+GGG | 0.601469 | 5.4:-5059202 | None:intergenic |
| AGTTTGGATTGATAGAGCCA+CGG | 0.603796 | 5.4:+5057792 | MS.gene015544:CDS |
| GATTGCACGCACACTAAAGG+TGG | 0.628473 | 5.4:+5059312 | MS.gene015544:CDS |
| GCAACACTGAACATGTTCAT+GGG | 0.629375 | 5.4:+5059121 | MS.gene015544:CDS |
| TGATGAATTCCCATCCTCAA+CGG | 0.629667 | 5.4:-5059259 | None:intergenic |
| ATCTAGGGCAAGCCTACAAG+AGG | 0.631041 | 5.4:+5059082 | MS.gene015544:CDS |
| CAACGGTGAAATCACCTGCA+TGG | 0.636855 | 5.4:-5059242 | None:intergenic |
| TACTATTGATGATGGCACCA+AGG | 0.640156 | 5.4:+5057082 | MS.gene015544:CDS |
| AGCCAAGCAAAGCTTGCCCG+TGG | 0.641717 | 5.4:-5057809 | None:intergenic |
| GCAAGTTGACAGATCTGAGG+AGG | 0.643594 | 5.4:-5056903 | None:intergenic |
| ACACTGAACATGTTCATGGG+TGG | 0.656933 | 5.4:+5059124 | MS.gene015544:CDS |
| CATACCTTCAGCATACCTGG+TGG | 0.660309 | 5.4:+5058992 | MS.gene015544:CDS |
| CAAACCACCAGGTATGCTGA+AGG | 0.668408 | 5.4:-5058996 | None:intergenic |
| TCCTTTCAGAAAACACTGGG+AGG | 0.675908 | 5.4:-5059199 | None:intergenic |
| GTTGCAAGTTGACAGATCTG+AGG | 0.684069 | 5.4:-5056906 | None:intergenic |
| TTGGCTATATCAGCTAACAA+GGG | 0.728498 | 5.4:+5057826 | MS.gene015544:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTATAATCTATTTAATA+GGG | + | chr5.4:5058526-5058545 | MS.gene015544:intron | 10.0% |
| !!! | AAAAATTAATTTTGAATGAT+TGG | + | chr5.4:5057292-5057311 | MS.gene015544:intron | 10.0% |
| !!! | TTATTATAAATCTATTTTAG+TGG | + | chr5.4:5058923-5058942 | MS.gene015544:intron | 10.0% |
| !! | CACATTATAATCTATTTAAT+AGG | + | chr5.4:5058525-5058544 | MS.gene015544:intron | 15.0% |
| !!! | AGTTATGATATGATATTTTT+GGG | + | chr5.4:5058136-5058155 | MS.gene015544:intron | 15.0% |
| !!! | GTATTACATAATTTTCATTA+AGG | + | chr5.4:5058320-5058339 | MS.gene015544:intron | 15.0% |
| !!! | TCTATCTTTTTCTATAAAAT+TGG | + | chr5.4:5057637-5057656 | MS.gene015544:intron | 15.0% |
| !!! | TTTTCATTAAGGAATATAAT+TGG | + | chr5.4:5058331-5058350 | MS.gene015544:intron | 15.0% |
| !! | TTACATAGATAAATCTTTGT+CGG | + | chr5.4:5058770-5058789 | MS.gene015544:intron | 20.0% |
| !!! | ATTGTATTTTCTAGAATAGA+TGG | + | chr5.4:5057988-5058007 | MS.gene015544:intron | 20.0% |
| !!! | GAGTTATGATATGATATTTT+TGG | + | chr5.4:5058135-5058154 | MS.gene015544:intron | 20.0% |
| !!! | GATATTTATTGTTTTTATCG+AGG | - | chr5.4:5058506-5058525 | None:intergenic | 20.0% |
| !!! | TATACCTTTAGAATCAATTT+TGG | + | chr5.4:5057422-5057441 | MS.gene015544:intron | 20.0% |
| !!! | TTATTTTAGATGATTTAGAC+TGG | + | chr5.4:5058215-5058234 | MS.gene015544:intron | 20.0% |
| ! | AATCTAGAAAACTATGTTTG+TGG | - | chr5.4:5058292-5058311 | None:intergenic | 25.0% |
| ! | AATGAATAAAGTAATCACCT+TGG | - | chr5.4:5057102-5057121 | None:intergenic | 25.0% |
| ! | ATCTAGAAAACTATGTTTGT+GGG | - | chr5.4:5058291-5058310 | None:intergenic | 25.0% |
| ! | CATGATTTACCAATCAATTT+GGG | + | chr5.4:5057023-5057042 | MS.gene015544:CDS | 25.0% |
| ! | TATTCTTCAGAATACATCTA+GGG | + | chr5.4:5059067-5059086 | MS.gene015544:CDS | 25.0% |
| ! | TCATGATTTACCAATCAATT+TGG | + | chr5.4:5057022-5057041 | MS.gene015544:CDS | 25.0% |
| ! | TTATTCTTCAGAATACATCT+AGG | + | chr5.4:5059066-5059085 | MS.gene015544:CDS | 25.0% |
| !! | AAATGTATGTGTGCTTATTT+TGG | + | chr5.4:5057242-5057261 | MS.gene015544:intron | 25.0% |
| !! | CAAACATAGTTTTCTAGATT+TGG | + | chr5.4:5058292-5058311 | MS.gene015544:intron | 25.0% |
| !! | GAATTGATGATAGAAGATAT+TGG | + | chr5.4:5057863-5057882 | MS.gene015544:CDS | 25.0% |
| !! | GAGTTTAAAATCAATTCTAG+AGG | + | chr5.4:5057348-5057367 | MS.gene015544:intron | 25.0% |
| !! | TGGTAAATCATGAAAGATTT+TGG | - | chr5.4:5057015-5057034 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTGTGAAACTGTT+TGG | + | chr5.4:5057517-5057536 | MS.gene015544:intron | 25.0% |
| !!! | CGAGGTTTTTTTTTCAATTT+AGG | - | chr5.4:5058488-5058507 | None:intergenic | 25.0% |
| !!! | GATTTTCTGCATCTTTTTTA+TGG | + | chr5.4:5058564-5058583 | MS.gene015544:intron | 25.0% |
| !!! | GGACTGTCTTAATTTTTTTT+TGG | + | chr5.4:5058009-5058028 | MS.gene015544:intron | 25.0% |
| !!! | TAAGTTTTGTGAAACTGTTT+GGG | + | chr5.4:5057518-5057537 | MS.gene015544:intron | 25.0% |
| !!! | TGATTAGTTTAATGATGAGA+GGG | + | chr5.4:5058066-5058085 | MS.gene015544:intron | 25.0% |
| !!! | TTGATTAGTTTAATGATGAG+AGG | + | chr5.4:5058065-5058084 | MS.gene015544:intron | 25.0% |
| ATATCATCACTGAAGAATCT+AGG | + | chr5.4:5057890-5057909 | MS.gene015544:CDS | 30.0% | |
| ATCATCAACTGCGAAAATTA+AGG | - | chr5.4:5058864-5058883 | None:intergenic | 30.0% | |
| ATCCATTTCGCGAAAAATTT+AGG | - | chr5.4:5057156-5057175 | None:intergenic | 30.0% | |
| CGACTTAATACTATTGATGA+TGG | + | chr5.4:5057074-5057093 | MS.gene015544:CDS | 30.0% | |
| GACTAACACATGTTGATATT+TGG | - | chr5.4:5058372-5058391 | None:intergenic | 30.0% | |
| GTGAAAATTGGTAAAGTGAT+AGG | + | chr5.4:5058644-5058663 | MS.gene015544:intron | 30.0% | |
| TAATTCACCTAAAGTTGAAC+CGG | - | chr5.4:5056844-5056863 | None:intergenic | 30.0% | |
| TCCATTTCGCGAAAAATTTA+GGG | - | chr5.4:5057155-5057174 | None:intergenic | 30.0% | |
| TCTAGAAAACTATGTTTGTG+GGG | - | chr5.4:5058290-5058309 | None:intergenic | 30.0% | |
| TGGAATCATACATACACTTA+AGG | + | chr5.4:5057457-5057476 | MS.gene015544:intron | 30.0% | |
| ! | AGTCATAGAGAATTTGACTT+TGG | - | chr5.4:5059286-5059305 | None:intergenic | 30.0% |
| ! | TCTCTTTTACCCAAATTGAT+TGG | - | chr5.4:5057035-5057054 | None:intergenic | 30.0% |
| ! | TGTATGTATGATTCCACTTT+TGG | - | chr5.4:5057453-5057472 | None:intergenic | 30.0% |
| !! | GATTAGTTTAATGATGAGAG+GGG | + | chr5.4:5058067-5058086 | MS.gene015544:intron | 30.0% |
| !!! | AATCTATTTTAGTGGTGCTT+TGG | + | chr5.4:5058931-5058950 | MS.gene015544:intron | 30.0% |
| !!! | ATTTTGGTTTAGCGTATGTT+TGG | + | chr5.4:5057258-5057277 | MS.gene015544:intron | 30.0% |
| AACAGAATTGATCACAATGC+AGG | - | chr5.4:5057957-5057976 | None:intergenic | 35.0% | |
| AACATGTGTTAGTCCAAGTA+TGG | + | chr5.4:5058378-5058397 | MS.gene015544:intron | 35.0% | |
| AACCTGTAACCACATGTTTA+AGG | - | chr5.4:5058414-5058433 | None:intergenic | 35.0% | |
| ACATGTGTTAGTCCAAGTAT+GGG | + | chr5.4:5058379-5058398 | MS.gene015544:intron | 35.0% | |
| ACCTGTAACCACATGTTTAA+GGG | - | chr5.4:5058413-5058432 | None:intergenic | 35.0% | |
| AGCAAGCATATTTACCAATG+TGG | - | chr5.4:5058838-5058857 | None:intergenic | 35.0% | |
| AGTTCCTTTCAGAAAACACT+GGG | - | chr5.4:5059205-5059224 | None:intergenic | 35.0% | |
| ATCATACATACACTTAAGGC+TGG | + | chr5.4:5057461-5057480 | MS.gene015544:intron | 35.0% | |
| CTTATCTCAGCTTATAACAC+AGG | - | chr5.4:5057703-5057722 | None:intergenic | 35.0% | |
| GACTGGAATACATTCAAGTA+AGG | + | chr5.4:5058232-5058251 | MS.gene015544:intron | 35.0% | |
| GATAGGACATCGTTTGAAAA+TGG | + | chr5.4:5058661-5058680 | MS.gene015544:intron | 35.0% | |
| TTGGCTATATCAGCTAACAA+GGG | + | chr5.4:5057826-5057845 | MS.gene015544:CDS | 35.0% | |
| ! | AATTGGACTTTTTACCATGC+AGG | + | chr5.4:5059228-5059247 | MS.gene015544:CDS | 35.0% |
| ! | ACCCTAAATTTTTCGCGAAA+TGG | + | chr5.4:5057151-5057170 | MS.gene015544:intron | 35.0% |
| ! | AGGAGAAGATGGTAATTTGT+CGG | - | chr5.4:5056990-5057009 | None:intergenic | 35.0% |
| ! | GGAGCCAAAATTGATTCTAA+AGG | - | chr5.4:5057429-5057448 | None:intergenic | 35.0% |
| ! | TGCTCTTTTTGAATTCGCTT+GGG | - | chr5.4:5059365-5059384 | None:intergenic | 35.0% |
| ! | TTGCTCTTTTTGAATTCGCT+TGG | - | chr5.4:5059366-5059385 | None:intergenic | 35.0% |
| ! | TTGTTTGAGTTCAACCACAT+TGG | + | chr5.4:5058821-5058840 | MS.gene015544:intron | 35.0% |
| ! | TTTGTTGTGTGCAGAAAGTT+TGG | + | chr5.4:5057776-5057795 | MS.gene015544:intron | 35.0% |
| !! | AAGGTAATGGAGAGAACTAA+GGG | + | chr5.4:5058090-5058109 | MS.gene015544:intron | 35.0% |
| !! | AATCATGAAAGATTTTGGCG+AGG | - | chr5.4:5057010-5057029 | None:intergenic | 35.0% |
| !! | ATGTATGATTCCACTTTTGG+AGG | - | chr5.4:5057450-5057469 | None:intergenic | 35.0% |
| !! | CACTTGATGATGGTGAAAAT+TGG | + | chr5.4:5058632-5058651 | MS.gene015544:intron | 35.0% |
| !! | TTCTTCTGCTGATTTCGTTT+GGG | + | chr5.4:5056953-5056972 | MS.gene015544:CDS | 35.0% |
| AACAAGGGACTATCAGTACT+TGG | + | chr5.4:5057841-5057860 | MS.gene015544:CDS | 40.0% | |
| AACCACATGTTTAAGGGACA+CGG | - | chr5.4:5058407-5058426 | None:intergenic | 40.0% | |
| ACAGGTTCAATTCATACCCA+GGG | + | chr5.4:5058427-5058446 | MS.gene015544:intron | 40.0% | |
| AGTTGCGTTGCTTCAATCAT+CGG | + | chr5.4:5056870-5056889 | MS.gene015544:CDS | 40.0% | |
| AGTTTAATGATGAGAGGGGA+AGG | + | chr5.4:5058071-5058090 | MS.gene015544:intron | 40.0% | |
| AGTTTGGATTGATAGAGCCA+CGG | + | chr5.4:5057792-5057811 | MS.gene015544:CDS | 40.0% | |
| ATGTGTTAGTCCAAGTATGG+GGG | + | chr5.4:5058381-5058400 | MS.gene015544:intron | 40.0% | |
| ATTGAAGCAACGCAACTTTC+AGG | - | chr5.4:5056867-5056886 | None:intergenic | 40.0% | |
| ATTGATTGCACGCACACTAA+AGG | + | chr5.4:5059309-5059328 | MS.gene015544:CDS | 40.0% | |
| CAGTTCCTTTCAGAAAACAC+TGG | - | chr5.4:5059206-5059225 | None:intergenic | 40.0% | |
| CATGTGTTAGTCCAAGTATG+GGG | + | chr5.4:5058380-5058399 | MS.gene015544:intron | 40.0% | |
| CTTGGCTATATCAGCTAACA+AGG | + | chr5.4:5057825-5057844 | MS.gene015544:CDS | 40.0% | |
| CTTTGTCGGTACTATTGTGA+AGG | + | chr5.4:5058784-5058803 | MS.gene015544:intron | 40.0% | |
| GAAGAATAAGCTGTATGTCC+CGG | - | chr5.4:5059055-5059074 | None:intergenic | 40.0% | |
| GATAAGCTGTTTGTCCAAAC+AGG | + | chr5.4:5057717-5057736 | MS.gene015544:intron | 40.0% | |
| GCAACACTGAACATGTTCAT+GGG | + | chr5.4:5059121-5059140 | MS.gene015544:CDS | 40.0% | |
| GTTTGTCCAAACAGGCTTAT+TGG | + | chr5.4:5057725-5057744 | MS.gene015544:intron | 40.0% | |
| TAAAGTTGAACCGGTTGAAC+CGG | - | chr5.4:5056835-5056854 | None:intergenic | 40.0% | |
| TAATGGAGAGAACTAAGGGA+GGG | + | chr5.4:5058094-5058113 | MS.gene015544:intron | 40.0% | |
| TACAGGTTCAATTCATACCC+AGG | + | chr5.4:5058426-5058445 | MS.gene015544:intron | 40.0% | |
| TCATTTCGATCCAACCAAAC+CGG | + | chr5.4:5056813-5056832 | MS.gene015544:CDS | 40.0% | |
| TCCAACTTTGGACTTCAGAT+GGG | + | chr5.4:5059166-5059185 | MS.gene015544:CDS | 40.0% | |
| TCCCTTAAACATGTGGTTAC+AGG | + | chr5.4:5058409-5058428 | MS.gene015544:intron | 40.0% | |
| TGATGAATTCCCATCCTCAA+CGG | - | chr5.4:5059262-5059281 | None:intergenic | 40.0% | |
| TGCAACACTGAACATGTTCA+TGG | + | chr5.4:5059120-5059139 | MS.gene015544:CDS | 40.0% | |
| TTCCAACTTTGGACTTCAGA+TGG | + | chr5.4:5059165-5059184 | MS.gene015544:CDS | 40.0% | |
| ! | AAACAGGCTTATTGGCTGAT+GGG | + | chr5.4:5057733-5057752 | MS.gene015544:intron | 40.0% |
| ! | ACATACACTTAAGGCTGGTT+CGG | + | chr5.4:5057466-5057485 | MS.gene015544:intron | 40.0% |
| ! | ATTCTTCCATCGACTAGTCA+AGG | - | chr5.4:5058462-5058481 | None:intergenic | 40.0% |
| ! | TGCTTCAATCATCGGTTACA+TGG | + | chr5.4:5056878-5056897 | MS.gene015544:CDS | 40.0% |
| ! | TTCTGAAAGGAACTGGCAAT+TGG | + | chr5.4:5059211-5059230 | MS.gene015544:CDS | 40.0% |
| ! | TTCTTCCATCGACTAGTCAA+GGG | - | chr5.4:5058461-5058480 | None:intergenic | 40.0% |
| !! | CAGTGTTTTCTGAAAGGAAC+TGG | + | chr5.4:5059204-5059223 | MS.gene015544:CDS | 40.0% |
| !! | CTTCTTCTGCTGATTTCGTT+TGG | + | chr5.4:5056952-5056971 | MS.gene015544:CDS | 40.0% |
| !! | GAAGGTAATGGAGAGAACTA+AGG | + | chr5.4:5058089-5058108 | MS.gene015544:intron | 40.0% |
| !! | TACTATTGATGATGGCACCA+AGG | + | chr5.4:5057082-5057101 | MS.gene015544:CDS | 40.0% |
| !!! | AATTTTGGCTCCTCCAAAAG+TGG | + | chr5.4:5057437-5057456 | MS.gene015544:intron | 40.0% |
| AATGGAGAGAACTAAGGGAG+GGG | + | chr5.4:5058095-5058114 | MS.gene015544:intron | 45.0% | |
| ACACTGAACATGTTCATGGG+TGG | + | chr5.4:5059124-5059143 | MS.gene015544:CDS | 45.0% | |
| AGTCAAGGGATCAATTACCC+TGG | - | chr5.4:5058447-5058466 | None:intergenic | 45.0% | |
| ATCATCAAGTGCGCGAGAAT+AGG | - | chr5.4:5058623-5058642 | None:intergenic | 45.0% | |
| ATGATGAGAGGGGAAGGTAA+TGG | + | chr5.4:5058077-5058096 | MS.gene015544:intron | 45.0% | |
| ATTACGCTTCTCTGCTACTG+AGG | + | chr5.4:5058726-5058745 | MS.gene015544:intron | 45.0% | |
| CACTAAAGGTGGTCTGTGTT+TGG | + | chr5.4:5059323-5059342 | MS.gene015544:CDS | 45.0% | |
| CACTGAACATGTTCATGGGT+GGG | + | chr5.4:5059125-5059144 | MS.gene015544:CDS | 45.0% | |
| CATCAGCCAATAAGCCTGTT+TGG | - | chr5.4:5057734-5057753 | None:intergenic | 45.0% | |
| GTCAAGGGATCAATTACCCT+GGG | - | chr5.4:5058446-5058465 | None:intergenic | 45.0% | |
| GTGATTTCACCGTTGAGGAT+GGG | + | chr5.4:5059250-5059269 | MS.gene015544:CDS | 45.0% | |
| GTTTGGATTGATAGAGCCAC+GGG | + | chr5.4:5057793-5057812 | MS.gene015544:CDS | 45.0% | |
| TATTCTCGCGCACTTGATGA+TGG | + | chr5.4:5058622-5058641 | MS.gene015544:intron | 45.0% | |
| TCCTTTCAGAAAACACTGGG+AGG | - | chr5.4:5059202-5059221 | None:intergenic | 45.0% | |
| TTGCATACCTTCAGCATACC+TGG | + | chr5.4:5058989-5059008 | MS.gene015544:CDS | 45.0% | |
| ! | CAAACAGGCTTATTGGCTGA+TGG | + | chr5.4:5057732-5057751 | MS.gene015544:intron | 45.0% |
| ! | GGTTCAACCGGTTCAACTTT+AGG | + | chr5.4:5056834-5056853 | MS.gene015544:CDS | 45.0% |
| ! | GTAATGGAGAGAACTAAGGG+AGG | + | chr5.4:5058093-5058112 | MS.gene015544:intron | 45.0% |
| ! | GTTGCAAGTTGACAGATCTG+AGG | - | chr5.4:5056909-5056928 | None:intergenic | 45.0% |
| ! | TTGATCCCTTGACTAGTCGA+TGG | + | chr5.4:5058453-5058472 | MS.gene015544:intron | 45.0% |
| !! | AGATTTTGGCGAGGAGAAGA+TGG | - | chr5.4:5057001-5057020 | None:intergenic | 45.0% |
| !! | GGCTGATGGGTTTGGATATA+TGG | + | chr5.4:5057746-5057765 | MS.gene015544:intron | 45.0% |
| AATAAGCTGTATGTCCCGGC+TGG | - | chr5.4:5059051-5059070 | None:intergenic | 50.0% | |
| ACGACGTCCAAACCTCTTGT+AGG | - | chr5.4:5059097-5059116 | None:intergenic | 50.0% | |
| AGCCTGTGCGATTCCAACTT+TGG | + | chr5.4:5059154-5059173 | MS.gene015544:CDS | 50.0% | |
| ATGGAGAGAACTAAGGGAGG+GGG | + | chr5.4:5058096-5058115 | MS.gene015544:intron | 50.0% | |
| CAAACCACCAGGTATGCTGA+AGG | - | chr5.4:5058999-5059018 | None:intergenic | 50.0% | |
| CAACGGTGAAATCACCTGCA+TGG | - | chr5.4:5059245-5059264 | None:intergenic | 50.0% | |
| CATACCTTCAGCATACCTGG+TGG | + | chr5.4:5058992-5059011 | MS.gene015544:CDS | 50.0% | |
| GATTGCACGCACACTAAAGG+TGG | + | chr5.4:5059312-5059331 | MS.gene015544:CDS | 50.0% | |
| GCATACCTGGTGGTTTGAAG+TGG | + | chr5.4:5059002-5059021 | MS.gene015544:CDS | 50.0% | |
| GGTGATTTCACCGTTGAGGA+TGG | + | chr5.4:5059249-5059268 | MS.gene015544:CDS | 50.0% | |
| GTCCAAAGTTGGAATCGCAC+AGG | - | chr5.4:5059159-5059178 | None:intergenic | 50.0% | |
| TGCAGGTGATTTCACCGTTG+AGG | + | chr5.4:5059245-5059264 | MS.gene015544:CDS | 50.0% | |
| TGTATGTCCCGGCTGGAAAT+GGG | - | chr5.4:5059044-5059063 | None:intergenic | 50.0% | |
| TTGAACCGGTTGAACCGGTT+TGG | - | chr5.4:5056830-5056849 | None:intergenic | 50.0% | |
| TTGACTTCCCATTTCCAGCC+GGG | + | chr5.4:5059034-5059053 | MS.gene015544:CDS | 50.0% | |
| ! | ACCTGGTGGTTTGAAGTGGA+CGG | + | chr5.4:5059006-5059025 | MS.gene015544:CDS | 50.0% |
| ! | ATCTAGGGCAAGCCTACAAG+AGG | + | chr5.4:5059082-5059101 | MS.gene015544:CDS | 50.0% |
| ! | GCAAGTTGACAGATCTGAGG+AGG | - | chr5.4:5056906-5056925 | None:intergenic | 50.0% |
| ! | GCCCATCTGAAGTCCAAAGT+TGG | - | chr5.4:5059170-5059189 | None:intergenic | 50.0% |
| ! | GCCTCCCAGTGTTTTCTGAA+AGG | + | chr5.4:5059198-5059217 | MS.gene015544:CDS | 50.0% |
| ! | GTTGACTTCCCATTTCCAGC+CGG | + | chr5.4:5059033-5059052 | MS.gene015544:CDS | 50.0% |
| ! | TCCAACCAAACCGGTTCAAC+CGG | + | chr5.4:5056822-5056841 | MS.gene015544:CDS | 50.0% |
| !! | CACTTAAGGCTGGTTCGGAT+TGG | + | chr5.4:5057471-5057490 | MS.gene015544:intron | 50.0% |
| !! | GGCTTATTGGCTGATGGGTT+TGG | + | chr5.4:5057738-5057757 | MS.gene015544:intron | 50.0% |
| AGAGAACTAAGGGAGGGGGA+AGG | + | chr5.4:5058100-5058119 | MS.gene015544:intron | 55.0% | |
| CTGTATGTCCCGGCTGGAAA+TGG | - | chr5.4:5059045-5059064 | None:intergenic | 55.0% | |
| GCTTCTCTGCTACTGAGGCA+CGG | + | chr5.4:5058731-5058750 | MS.gene015544:intron | 55.0% | |
| GGCCGTGTCCCTTAAACATG+TGG | + | chr5.4:5058402-5058421 | MS.gene015544:intron | 55.0% | |
| GGGCAAGCCTACAAGAGGTT+TGG | + | chr5.4:5059087-5059106 | MS.gene015544:CDS | 55.0% | |
| ! | CCTGGTGGTTTGAAGTGGAC+GGG | + | chr5.4:5059007-5059026 | MS.gene015544:CDS | 55.0% |
| ! | CTGGTGGTTTGAAGTGGACG+GGG | + | chr5.4:5059008-5059027 | MS.gene015544:CDS | 55.0% |
| !! | ACCGGTTGAACCGGTTTGGT+TGG | - | chr5.4:5056826-5056845 | None:intergenic | 55.0% |
| AAGGGAGGGGGAAGGAATCG+AGG | + | chr5.4:5058108-5058127 | MS.gene015544:intron | 60.0% | |
| AGCCAAGCAAAGCTTGCCCG+TGG | - | chr5.4:5057812-5057831 | None:intergenic | 60.0% | |
| AGCCACGGGCAAGCTTTGCT+TGG | + | chr5.4:5057807-5057826 | MS.gene015544:CDS | 60.0% | |
| AGGGAGGGGGAAGGAATCGA+GGG | + | chr5.4:5058109-5058128 | MS.gene015544:intron | 60.0% | |
| AGGGGGAAGGAATCGAGGGA+TGG | + | chr5.4:5058113-5058132 | MS.gene015544:intron | 60.0% | |
| CCCGTCCACTTCAAACCACC+AGG | - | chr5.4:5059010-5059029 | None:intergenic | 60.0% | |
| AGGGACACGGCCCCCATACT+TGG | - | chr5.4:5058394-5058413 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 5056795 | 5059407 | 5056795 | ID=MS.gene015544 |
| chr5.4 | mRNA | 5056795 | 5059407 | 5056795 | ID=MS.gene015544.t1;Parent=MS.gene015544 |
| chr5.4 | exon | 5056795 | 5057103 | 5056795 | ID=MS.gene015544.t1.exon1;Parent=MS.gene015544.t1 |
| chr5.4 | CDS | 5056795 | 5057103 | 5056795 | ID=cds.MS.gene015544.t1;Parent=MS.gene015544.t1 |
| chr5.4 | exon | 5057790 | 5057911 | 5057790 | ID=MS.gene015544.t1.exon2;Parent=MS.gene015544.t1 |
| chr5.4 | CDS | 5057790 | 5057911 | 5057790 | ID=cds.MS.gene015544.t1;Parent=MS.gene015544.t1 |
| chr5.4 | exon | 5058978 | 5059407 | 5058978 | ID=MS.gene015544.t1.exon3;Parent=MS.gene015544.t1 |
| chr5.4 | CDS | 5058978 | 5059407 | 5058978 | ID=cds.MS.gene015544.t1;Parent=MS.gene015544.t1 |
| Gene Sequence |
| Protein sequence |
