Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015546.t1 | AES94102.1 | 97.2 | 286 | 5 | 1 | 1 | 286 | 1 | 283 | 1.60E-164 | 588.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015546.t1 | Q9LN77 | 67.2 | 259 | 83 | 2 | 20 | 277 | 28 | 285 | 1.9e-102 | 373.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015546.t1 | G7KDG7 | 97.2 | 286 | 5 | 1 | 1 | 286 | 1 | 283 | 1.1e-164 | 588.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006331 | MS.gene015546 | PPI |
| MS.gene49051 | MS.gene015546 | PPI |
| MS.gene054425 | MS.gene015546 | PPI |
| MS.gene072532 | MS.gene015546 | PPI |
| MS.gene41397 | MS.gene015546 | PPI |
| MS.gene22796 | MS.gene015546 | PPI |
| MS.gene40823 | MS.gene015546 | PPI |
| MS.gene007330 | MS.gene015546 | PPI |
| MS.gene34457 | MS.gene015546 | PPI |
| MS.gene050935 | MS.gene015546 | PPI |
| MS.gene007614 | MS.gene015546 | PPI |
| MS.gene020575 | MS.gene015546 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015546.t1 | MTR_5g010800 | 97.203 | 286 | 5 | 1 | 1 | 286 | 1 | 283 | 0.0 | 577 |
| MS.gene015546.t1 | MTR_4g102770 | 76.208 | 269 | 61 | 2 | 20 | 286 | 19 | 286 | 6.67e-158 | 441 |
| MS.gene015546.t1 | MTR_0002s0020 | 56.401 | 289 | 117 | 3 | 1 | 281 | 1 | 288 | 5.11e-119 | 343 |
| MS.gene015546.t1 | MTR_7g103380 | 56.314 | 293 | 112 | 5 | 1 | 280 | 1 | 290 | 1.17e-112 | 327 |
| MS.gene015546.t1 | MTR_1g101390 | 57.308 | 260 | 109 | 2 | 20 | 278 | 28 | 286 | 8.95e-112 | 325 |
| MS.gene015546.t1 | MTR_0113s0040 | 55.344 | 262 | 115 | 2 | 16 | 276 | 18 | 278 | 1.87e-110 | 321 |
| MS.gene015546.t1 | MTR_7g112560 | 24.453 | 274 | 173 | 8 | 23 | 278 | 4 | 261 | 9.90e-28 | 108 |
| MS.gene015546.t1 | MTR_4g023570 | 25.379 | 264 | 161 | 8 | 23 | 277 | 4 | 240 | 4.77e-24 | 97.8 |
| MS.gene015546.t1 | MTR_1g079260 | 34.722 | 144 | 91 | 3 | 22 | 164 | 6 | 147 | 5.22e-22 | 93.2 |
| MS.gene015546.t1 | MTR_1g079180 | 34.932 | 146 | 91 | 3 | 22 | 164 | 6 | 150 | 2.18e-21 | 91.3 |
| MS.gene015546.t1 | MTR_1g079140 | 33.117 | 154 | 96 | 4 | 13 | 161 | 6 | 157 | 6.22e-21 | 90.9 |
| MS.gene015546.t1 | MTR_1g079230 | 33.562 | 146 | 90 | 4 | 22 | 164 | 6 | 147 | 5.05e-19 | 85.1 |
| MS.gene015546.t1 | MTR_1g079380 | 32.667 | 150 | 94 | 4 | 18 | 164 | 2 | 147 | 1.23e-18 | 84.3 |
| MS.gene015546.t1 | MTR_1g079370 | 25.940 | 266 | 184 | 6 | 18 | 273 | 2 | 264 | 2.16e-18 | 83.2 |
| MS.gene015546.t1 | MTR_7g112550 | 22.414 | 290 | 185 | 9 | 15 | 273 | 2 | 282 | 2.52e-18 | 83.2 |
| MS.gene015546.t1 | MTR_1g079200 | 26.236 | 263 | 178 | 9 | 22 | 273 | 6 | 263 | 3.58e-18 | 82.4 |
| MS.gene015546.t1 | MTR_1g079460 | 25.725 | 276 | 169 | 10 | 22 | 275 | 6 | 267 | 1.73e-17 | 80.5 |
| MS.gene015546.t1 | MTR_1g100597 | 31.250 | 144 | 96 | 3 | 22 | 164 | 6 | 147 | 2.05e-17 | 80.5 |
| MS.gene015546.t1 | MTR_1g079850 | 31.973 | 147 | 95 | 3 | 22 | 164 | 6 | 151 | 4.77e-17 | 79.7 |
| MS.gene015546.t1 | MTR_1g083580 | 28.049 | 164 | 112 | 4 | 18 | 176 | 6 | 168 | 5.92e-16 | 76.6 |
| MS.gene015546.t1 | MTR_1g079410 | 29.870 | 154 | 97 | 4 | 18 | 164 | 6 | 155 | 1.02e-15 | 75.9 |
| MS.gene015546.t1 | MTR_3g452600 | 31.944 | 144 | 91 | 4 | 20 | 161 | 10 | 148 | 1.47e-14 | 72.4 |
| MS.gene015546.t1 | MTR_1g079400 | 28.571 | 161 | 102 | 4 | 12 | 164 | 4 | 159 | 4.71e-14 | 71.2 |
| MS.gene015546.t1 | MTR_1g100613 | 31.008 | 129 | 86 | 3 | 37 | 164 | 6 | 132 | 5.33e-14 | 70.5 |
| MS.gene015546.t1 | MTR_1g079250 | 30.872 | 149 | 93 | 5 | 22 | 164 | 6 | 150 | 1.88e-13 | 69.7 |
| MS.gene015546.t1 | MTR_1g079350 | 28.431 | 204 | 120 | 7 | 22 | 216 | 6 | 192 | 8.80e-13 | 67.4 |
| MS.gene015546.t1 | MTR_3g450990 | 31.852 | 135 | 83 | 5 | 20 | 152 | 10 | 137 | 6.46e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015546.t1 | AT1G12710 | 67.181 | 259 | 83 | 2 | 20 | 277 | 28 | 285 | 5.95e-128 | 365 |
| MS.gene015546.t1 | AT1G12710 | 57.807 | 301 | 83 | 3 | 20 | 277 | 28 | 327 | 6.73e-119 | 344 |
| MS.gene015546.t1 | AT3G61060 | 58.242 | 273 | 111 | 3 | 9 | 279 | 14 | 285 | 5.94e-118 | 340 |
| MS.gene015546.t1 | AT3G61060 | 58.029 | 274 | 111 | 4 | 9 | 279 | 14 | 286 | 2.10e-116 | 336 |
| MS.gene015546.t1 | AT1G63090 | 59.507 | 284 | 107 | 3 | 1 | 277 | 1 | 283 | 1.50e-114 | 332 |
| MS.gene015546.t1 | AT3G53000 | 53.333 | 285 | 120 | 3 | 1 | 273 | 1 | 284 | 1.08e-103 | 304 |
| MS.gene015546.t1 | AT5G52120 | 48.772 | 285 | 137 | 3 | 1 | 277 | 1 | 284 | 4.95e-98 | 290 |
| MS.gene015546.t1 | AT2G02360 | 34.591 | 159 | 94 | 4 | 9 | 164 | 3 | 154 | 8.89e-27 | 105 |
| MS.gene015546.t1 | AT2G02230 | 31.792 | 173 | 108 | 6 | 17 | 184 | 29 | 196 | 1.32e-23 | 98.6 |
| MS.gene015546.t1 | AT2G02240 | 34.752 | 141 | 86 | 3 | 23 | 162 | 64 | 199 | 1.62e-22 | 95.5 |
| MS.gene015546.t1 | AT1G09155 | 24.823 | 282 | 184 | 7 | 23 | 277 | 3 | 283 | 3.86e-22 | 94.0 |
| MS.gene015546.t1 | AT2G02340 | 32.927 | 164 | 100 | 5 | 18 | 176 | 34 | 192 | 4.74e-22 | 94.0 |
| MS.gene015546.t1 | AT2G02350 | 36.054 | 147 | 83 | 5 | 16 | 158 | 20 | 159 | 9.03e-22 | 92.8 |
| MS.gene015546.t1 | AT2G02250 | 30.667 | 150 | 95 | 3 | 15 | 161 | 42 | 185 | 1.71e-21 | 92.4 |
| MS.gene015546.t1 | AT2G02320 | 31.285 | 179 | 110 | 6 | 3 | 176 | 22 | 192 | 4.04e-20 | 88.6 |
| MS.gene015546.t1 | AT5G24560 | 26.347 | 167 | 112 | 4 | 22 | 187 | 5 | 161 | 1.45e-18 | 82.0 |
| MS.gene015546.t1 | AT2G02310 | 31.544 | 149 | 92 | 4 | 18 | 163 | 43 | 184 | 1.66e-18 | 84.0 |
| MS.gene015546.t1 | AT1G56250 | 24.232 | 293 | 164 | 8 | 23 | 273 | 4 | 280 | 9.63e-17 | 79.0 |
| MS.gene015546.t1 | AT1G56240 | 24.028 | 283 | 185 | 5 | 23 | 277 | 4 | 284 | 2.98e-16 | 77.4 |
| MS.gene015546.t1 | AT1G80110 | 24.242 | 264 | 181 | 9 | 20 | 273 | 1 | 255 | 4.96e-16 | 76.3 |
| MS.gene015546.t1 | AT2G02300 | 26.891 | 238 | 141 | 10 | 16 | 242 | 30 | 245 | 6.89e-13 | 67.8 |
Find 71 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGATTTACCAATCAATT+TGG | 0.149392 | 5.1:+4287842 | MS.gene015546:CDS |
| TGGTAAATCATGAAAGATTT+TGG | 0.209100 | 5.1:-4287832 | None:intergenic |
| ATTGAAGCAACGCAACTTTC+AGG | 0.221705 | 5.1:-4287684 | None:intergenic |
| CTTCTTCTGCTGATTTCGTT+TGG | 0.259520 | 5.1:+4287772 | MS.gene015546:CDS |
| GGTTCAACCGGTTCAACTTT+AGG | 0.271212 | 5.1:+4287654 | MS.gene015546:CDS |
| CTGTATGTCCCGGCTGGAAA+TGG | 0.317696 | 5.1:-4289865 | None:intergenic |
| TTCTTCTGCTGATTTCGTTT+GGG | 0.325116 | 5.1:+4287773 | MS.gene015546:CDS |
| CACTAAAGGTGGTCTGTGTT+TGG | 0.348141 | 5.1:+4290146 | MS.gene015546:CDS |
| CATGATTTACCAATCAATTT+GGG | 0.351067 | 5.1:+4287843 | MS.gene015546:CDS |
| TTTGTTGTGTGCAGAAAGTT+TGG | 0.359355 | 5.1:+4288599 | MS.gene015546:intron |
| AGCCTGTGCGATTCCAACTT+TGG | 0.369551 | 5.1:+4289977 | MS.gene015546:CDS |
| TTCTGAAAGGAACTGGCAAT+TGG | 0.389942 | 5.1:+4290034 | MS.gene015546:CDS |
| TGCTTCAATCATCGGTTACA+TGG | 0.409316 | 5.1:+4287698 | MS.gene015546:CDS |
| TTATTCTTCAGAATACATCT+AGG | 0.422202 | 5.1:+4289889 | MS.gene015546:CDS |
| TCCAACCAAACCGGTTCAAC+CGG | 0.434266 | 5.1:+4287642 | MS.gene015546:CDS |
| TAAAGTTGAACCGGTTGAAC+CGG | 0.438212 | 5.1:-4287652 | None:intergenic |
| ACGACGTCCAAACCTCTTGT+AGG | 0.439552 | 5.1:-4289917 | None:intergenic |
| GGGCAAGCCTACAAGAGGTT+TGG | 0.441598 | 5.1:+4289910 | MS.gene015546:CDS |
| GAATTGATGATAGAAGATAT+TGG | 0.446914 | 5.1:+4288686 | MS.gene015546:CDS |
| CGACTTAATACTATTGATGA+TGG | 0.447327 | 5.1:+4287894 | MS.gene015546:CDS |
| TTGAACCGGTTGAACCGGTT+TGG | 0.448850 | 5.1:-4287647 | None:intergenic |
| AGTCATAGAGAATTTGACTT+TGG | 0.459733 | 5.1:-4290106 | None:intergenic |
| ATATCATCACTGAAGAATCT+AGG | 0.462039 | 5.1:+4288713 | MS.gene015546:CDS |
| AGCCACGGGCAAGCTTTGCT+TGG | 0.464990 | 5.1:+4288630 | MS.gene015546:CDS |
| TTCCAACTTTGGACTTCAGA+TGG | 0.477540 | 5.1:+4289988 | MS.gene015546:CDS |
| TAATTCACCTAAAGTTGAAC+CGG | 0.483165 | 5.1:-4287661 | None:intergenic |
| TTGCATACCTTCAGCATACC+TGG | 0.490977 | 5.1:+4289812 | MS.gene015546:CDS |
| TGTATGTCCCGGCTGGAAAT+GGG | 0.498240 | 5.1:-4289864 | None:intergenic |
| TCATTTCGATCCAACCAAAC+CGG | 0.498725 | 5.1:+4287633 | MS.gene015546:CDS |
| TGCAACACTGAACATGTTCA+TGG | 0.501094 | 5.1:+4289943 | MS.gene015546:CDS |
| CCTGGTGGTTTGAAGTGGAC+GGG | 0.501663 | 5.1:+4289830 | MS.gene015546:CDS |
| AACAAGGGACTATCAGTACT+TGG | 0.501726 | 5.1:+4288664 | MS.gene015546:CDS |
| GGTGATTTCACCGTTGAGGA+TGG | 0.503816 | 5.1:+4290072 | MS.gene015546:CDS |
| CTTGGCTATATCAGCTAACA+AGG | 0.503821 | 5.1:+4288648 | MS.gene015546:CDS |
| AGTTGCGTTGCTTCAATCAT+CGG | 0.506036 | 5.1:+4287690 | MS.gene015546:CDS |
| ACCGGTTGAACCGGTTTGGT+TGG | 0.509700 | 5.1:-4287643 | None:intergenic |
| ATTGATTGCACGCACACTAA+AGG | 0.512444 | 5.1:+4290132 | MS.gene015546:CDS |
| CACTGAACATGTTCATGGGT+GGG | 0.526344 | 5.1:+4289948 | MS.gene015546:CDS |
| CAGTTCCTTTCAGAAAACAC+TGG | 0.526894 | 5.1:-4290026 | None:intergenic |
| GCCCATCTGAAGTCCAAAGT+TGG | 0.536214 | 5.1:-4289990 | None:intergenic |
| CCCGTCCACTTCAAACCACC+AGG | 0.538040 | 5.1:-4289830 | None:intergenic |
| AATAAGCTGTATGTCCCGGC+TGG | 0.538928 | 5.1:-4289871 | None:intergenic |
| TTGACTTCCCATTTCCAGCC+GGG | 0.542798 | 5.1:+4289857 | MS.gene015546:CDS |
| TCCAACTTTGGACTTCAGAT+GGG | 0.543088 | 5.1:+4289989 | MS.gene015546:CDS |
| GCATACCTGGTGGTTTGAAG+TGG | 0.546087 | 5.1:+4289825 | MS.gene015546:CDS |
| AGGAGAAGATGGTAATTTGT+CGG | 0.546308 | 5.1:-4287807 | None:intergenic |
| GTGATTTCACCGTTGAGGAT+GGG | 0.546700 | 5.1:+4290073 | MS.gene015546:CDS |
| TATTCTTCAGAATACATCTA+GGG | 0.555396 | 5.1:+4289890 | MS.gene015546:CDS |
| ACCTGGTGGTTTGAAGTGGA+CGG | 0.561016 | 5.1:+4289829 | MS.gene015546:CDS |
| GTTTGGATTGATAGAGCCAC+GGG | 0.562866 | 5.1:+4288616 | MS.gene015546:CDS |
| GAAGAATAAGCTGTATGTCC+CGG | 0.575375 | 5.1:-4289875 | None:intergenic |
| GTCCAAAGTTGGAATCGCAC+AGG | 0.578305 | 5.1:-4289979 | None:intergenic |
| TGCAGGTGATTTCACCGTTG+AGG | 0.581687 | 5.1:+4290068 | MS.gene015546:CDS |
| CTGGTGGTTTGAAGTGGACG+GGG | 0.591797 | 5.1:+4289831 | MS.gene015546:CDS |
| GTTGACTTCCCATTTCCAGC+CGG | 0.592053 | 5.1:+4289856 | MS.gene015546:CDS |
| AGTTCCTTTCAGAAAACACT+GGG | 0.601469 | 5.1:-4290025 | None:intergenic |
| AGTTTGGATTGATAGAGCCA+CGG | 0.603796 | 5.1:+4288615 | MS.gene015546:CDS |
| GATTGCACGCACACTAAAGG+TGG | 0.628473 | 5.1:+4290135 | MS.gene015546:CDS |
| GCAACACTGAACATGTTCAT+GGG | 0.629375 | 5.1:+4289944 | MS.gene015546:CDS |
| TGATGAATTCCCATCCTCAA+CGG | 0.629667 | 5.1:-4290082 | None:intergenic |
| ATCTAGGGCAAGCCTACAAG+AGG | 0.631041 | 5.1:+4289905 | MS.gene015546:CDS |
| CAACGGTGAAATCACCTGCA+TGG | 0.636855 | 5.1:-4290065 | None:intergenic |
| TACTATTGATGATGGCACCA+AGG | 0.640156 | 5.1:+4287902 | MS.gene015546:CDS |
| AGCCAAGCAAAGCTTGCCCG+TGG | 0.641717 | 5.1:-4288632 | None:intergenic |
| GCAAGTTGACAGATCTGAGG+AGG | 0.643594 | 5.1:-4287723 | None:intergenic |
| ACACTGAACATGTTCATGGG+TGG | 0.656933 | 5.1:+4289947 | MS.gene015546:CDS |
| CATACCTTCAGCATACCTGG+TGG | 0.660309 | 5.1:+4289815 | MS.gene015546:CDS |
| CAAACCACCAGGTATGCTGA+AGG | 0.668408 | 5.1:-4289819 | None:intergenic |
| TCCTTTCAGAAAACACTGGG+AGG | 0.675908 | 5.1:-4290022 | None:intergenic |
| GTTGCAAGTTGACAGATCTG+AGG | 0.684069 | 5.1:-4287726 | None:intergenic |
| TTGGCTATATCAGCTAACAA+GGG | 0.728498 | 5.1:+4288649 | MS.gene015546:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTATAATCTATTTAATA+GGG | + | chr5.1:4289349-4289368 | MS.gene015546:intron | 10.0% |
| !!! | AAAAATTAATTTTGAATGAT+TGG | + | chr5.1:4288115-4288134 | MS.gene015546:intron | 10.0% |
| !!! | TTATTATAAATCTATTTTAG+TGG | + | chr5.1:4289746-4289765 | MS.gene015546:intron | 10.0% |
| !! | CACATTATAATCTATTTAAT+AGG | + | chr5.1:4289348-4289367 | MS.gene015546:intron | 15.0% |
| !!! | AGTTATGATATGATATTTTT+GGG | + | chr5.1:4288959-4288978 | MS.gene015546:intron | 15.0% |
| !!! | GTATTACATAATTTTCATTA+AGG | + | chr5.1:4289143-4289162 | MS.gene015546:intron | 15.0% |
| !!! | TCTATCTTTTTCTATAAAAT+TGG | + | chr5.1:4288460-4288479 | MS.gene015546:intron | 15.0% |
| !!! | TTTTCATTAAGGAATATAAT+TGG | + | chr5.1:4289154-4289173 | MS.gene015546:intron | 15.0% |
| !! | TTACATAGATAAATCTTTGT+CGG | + | chr5.1:4289593-4289612 | MS.gene015546:intron | 20.0% |
| !!! | ATTGTATTTTCTAGAATAGA+TGG | + | chr5.1:4288811-4288830 | MS.gene015546:intron | 20.0% |
| !!! | GAGTTATGATATGATATTTT+TGG | + | chr5.1:4288958-4288977 | MS.gene015546:intron | 20.0% |
| !!! | GATATTTATTGTTTTTATCG+AGG | - | chr5.1:4289329-4289348 | None:intergenic | 20.0% |
| !!! | TATACCTTTAGAATCAATTT+TGG | + | chr5.1:4288245-4288264 | MS.gene015546:intron | 20.0% |
| !!! | TTATTTTAGATGATTTAGAC+TGG | + | chr5.1:4289038-4289057 | MS.gene015546:intron | 20.0% |
| ! | AATCTAGAAAACTATGTTTG+TGG | - | chr5.1:4289115-4289134 | None:intergenic | 25.0% |
| ! | AATGAATAAAGTAATCACCT+TGG | - | chr5.1:4287922-4287941 | None:intergenic | 25.0% |
| ! | ATCTAGAAAACTATGTTTGT+GGG | - | chr5.1:4289114-4289133 | None:intergenic | 25.0% |
| ! | CATGATTTACCAATCAATTT+GGG | + | chr5.1:4287843-4287862 | MS.gene015546:CDS | 25.0% |
| ! | TATTCTTCAGAATACATCTA+GGG | + | chr5.1:4289890-4289909 | MS.gene015546:CDS | 25.0% |
| ! | TCATGATTTACCAATCAATT+TGG | + | chr5.1:4287842-4287861 | MS.gene015546:CDS | 25.0% |
| ! | TTATTCTTCAGAATACATCT+AGG | + | chr5.1:4289889-4289908 | MS.gene015546:CDS | 25.0% |
| !! | AAATGTATGTGTGCTTATTT+TGG | + | chr5.1:4288065-4288084 | MS.gene015546:intron | 25.0% |
| !! | CAAACATAGTTTTCTAGATT+TGG | + | chr5.1:4289115-4289134 | MS.gene015546:intron | 25.0% |
| !! | GAATTGATGATAGAAGATAT+TGG | + | chr5.1:4288686-4288705 | MS.gene015546:CDS | 25.0% |
| !! | GAGTTTAAAATCAATTCTAG+AGG | + | chr5.1:4288171-4288190 | MS.gene015546:intron | 25.0% |
| !! | TGGTAAATCATGAAAGATTT+TGG | - | chr5.1:4287835-4287854 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTGTGAAACTGTT+TGG | + | chr5.1:4288340-4288359 | MS.gene015546:intron | 25.0% |
| !!! | CGAGGTTTTTTTTTCAATTT+AGG | - | chr5.1:4289311-4289330 | None:intergenic | 25.0% |
| !!! | GATTTTCTGCATCTTTTTTA+TGG | + | chr5.1:4289387-4289406 | MS.gene015546:intron | 25.0% |
| !!! | GGACTGTCTTAATTTTTTTT+TGG | + | chr5.1:4288832-4288851 | MS.gene015546:intron | 25.0% |
| !!! | TAAGTTTTGTGAAACTGTTT+GGG | + | chr5.1:4288341-4288360 | MS.gene015546:intron | 25.0% |
| !!! | TGATTAGTTTAATGATGAGA+GGG | + | chr5.1:4288889-4288908 | MS.gene015546:intron | 25.0% |
| !!! | TTGATTAGTTTAATGATGAG+AGG | + | chr5.1:4288888-4288907 | MS.gene015546:intron | 25.0% |
| ATATCATCACTGAAGAATCT+AGG | + | chr5.1:4288713-4288732 | MS.gene015546:CDS | 30.0% | |
| ATCATCAACTGCGAAAATTA+AGG | - | chr5.1:4289687-4289706 | None:intergenic | 30.0% | |
| ATCCATTTCGCGAAAAATTT+AGG | - | chr5.1:4287976-4287995 | None:intergenic | 30.0% | |
| CGACTTAATACTATTGATGA+TGG | + | chr5.1:4287894-4287913 | MS.gene015546:CDS | 30.0% | |
| GACTAACACATGTTGATATT+TGG | - | chr5.1:4289195-4289214 | None:intergenic | 30.0% | |
| GTGAAAATTGGTAAAGTGAT+AGG | + | chr5.1:4289467-4289486 | MS.gene015546:intron | 30.0% | |
| TAATTCACCTAAAGTTGAAC+CGG | - | chr5.1:4287664-4287683 | None:intergenic | 30.0% | |
| TCCATTTCGCGAAAAATTTA+GGG | - | chr5.1:4287975-4287994 | None:intergenic | 30.0% | |
| TCTAGAAAACTATGTTTGTG+GGG | - | chr5.1:4289113-4289132 | None:intergenic | 30.0% | |
| TGGAATCATACATACACTTA+AGG | + | chr5.1:4288280-4288299 | MS.gene015546:intron | 30.0% | |
| ! | AGTCATAGAGAATTTGACTT+TGG | - | chr5.1:4290109-4290128 | None:intergenic | 30.0% |
| ! | TCTCTTTTACCCAAATTGAT+TGG | - | chr5.1:4287855-4287874 | None:intergenic | 30.0% |
| ! | TGTATGTATGATTCCACTTT+TGG | - | chr5.1:4288276-4288295 | None:intergenic | 30.0% |
| !! | GATTAGTTTAATGATGAGAG+GGG | + | chr5.1:4288890-4288909 | MS.gene015546:intron | 30.0% |
| !!! | AATCTATTTTAGTGGTGCTT+TGG | + | chr5.1:4289754-4289773 | MS.gene015546:intron | 30.0% |
| !!! | ATTTTGGTTTAGCGTATGTT+TGG | + | chr5.1:4288081-4288100 | MS.gene015546:intron | 30.0% |
| AACAGAATTGATCACAATGC+AGG | - | chr5.1:4288780-4288799 | None:intergenic | 35.0% | |
| AACATGTGTTAGTCCAAGTA+TGG | + | chr5.1:4289201-4289220 | MS.gene015546:intron | 35.0% | |
| AACCTGTAACCACATGTTTA+AGG | - | chr5.1:4289237-4289256 | None:intergenic | 35.0% | |
| ACATGTGTTAGTCCAAGTAT+GGG | + | chr5.1:4289202-4289221 | MS.gene015546:intron | 35.0% | |
| ACCTGTAACCACATGTTTAA+GGG | - | chr5.1:4289236-4289255 | None:intergenic | 35.0% | |
| AGCAAGCATATTTACCAATG+TGG | - | chr5.1:4289661-4289680 | None:intergenic | 35.0% | |
| AGTTCCTTTCAGAAAACACT+GGG | - | chr5.1:4290028-4290047 | None:intergenic | 35.0% | |
| ATCATACATACACTTAAGGC+TGG | + | chr5.1:4288284-4288303 | MS.gene015546:intron | 35.0% | |
| CTTATCTCAGCTTATAACAC+AGG | - | chr5.1:4288526-4288545 | None:intergenic | 35.0% | |
| GACTGGAATACATTCAAGTA+AGG | + | chr5.1:4289055-4289074 | MS.gene015546:intron | 35.0% | |
| GATAGGACATCGTTTGAAAA+TGG | + | chr5.1:4289484-4289503 | MS.gene015546:intron | 35.0% | |
| TTGGCTATATCAGCTAACAA+GGG | + | chr5.1:4288649-4288668 | MS.gene015546:CDS | 35.0% | |
| ! | AATTGGACTTTTTACCATGC+AGG | + | chr5.1:4290051-4290070 | MS.gene015546:CDS | 35.0% |
| ! | ACCCTAAATTTTTCGCGAAA+TGG | + | chr5.1:4287971-4287990 | MS.gene015546:intron | 35.0% |
| ! | AGGAGAAGATGGTAATTTGT+CGG | - | chr5.1:4287810-4287829 | None:intergenic | 35.0% |
| ! | GGAGCCAAAATTGATTCTAA+AGG | - | chr5.1:4288252-4288271 | None:intergenic | 35.0% |
| ! | TGCTCTTTTTGAATTCGCTT+GGG | - | chr5.1:4290188-4290207 | None:intergenic | 35.0% |
| ! | TTGCTCTTTTTGAATTCGCT+TGG | - | chr5.1:4290189-4290208 | None:intergenic | 35.0% |
| ! | TTGTTTGAGTTCAACCACAT+TGG | + | chr5.1:4289644-4289663 | MS.gene015546:intron | 35.0% |
| ! | TTTGTTGTGTGCAGAAAGTT+TGG | + | chr5.1:4288599-4288618 | MS.gene015546:intron | 35.0% |
| !! | AAGGTAATGGAGAGAACTAA+GGG | + | chr5.1:4288913-4288932 | MS.gene015546:intron | 35.0% |
| !! | AATCATGAAAGATTTTGGCG+AGG | - | chr5.1:4287830-4287849 | None:intergenic | 35.0% |
| !! | ATGTATGATTCCACTTTTGG+AGG | - | chr5.1:4288273-4288292 | None:intergenic | 35.0% |
| !! | CACTTGATGATGGTGAAAAT+TGG | + | chr5.1:4289455-4289474 | MS.gene015546:intron | 35.0% |
| !! | TTCTTCTGCTGATTTCGTTT+GGG | + | chr5.1:4287773-4287792 | MS.gene015546:CDS | 35.0% |
| AACAAGGGACTATCAGTACT+TGG | + | chr5.1:4288664-4288683 | MS.gene015546:CDS | 40.0% | |
| AACCACATGTTTAAGGGACA+CGG | - | chr5.1:4289230-4289249 | None:intergenic | 40.0% | |
| ACAGGTTCAATTCATACCCA+GGG | + | chr5.1:4289250-4289269 | MS.gene015546:intron | 40.0% | |
| AGTTGCGTTGCTTCAATCAT+CGG | + | chr5.1:4287690-4287709 | MS.gene015546:CDS | 40.0% | |
| AGTTTAATGATGAGAGGGGA+AGG | + | chr5.1:4288894-4288913 | MS.gene015546:intron | 40.0% | |
| AGTTTGGATTGATAGAGCCA+CGG | + | chr5.1:4288615-4288634 | MS.gene015546:CDS | 40.0% | |
| ATGTGTTAGTCCAAGTATGG+GGG | + | chr5.1:4289204-4289223 | MS.gene015546:intron | 40.0% | |
| ATTGAAGCAACGCAACTTTC+AGG | - | chr5.1:4287687-4287706 | None:intergenic | 40.0% | |
| ATTGATTGCACGCACACTAA+AGG | + | chr5.1:4290132-4290151 | MS.gene015546:CDS | 40.0% | |
| CAGTTCCTTTCAGAAAACAC+TGG | - | chr5.1:4290029-4290048 | None:intergenic | 40.0% | |
| CATGTGTTAGTCCAAGTATG+GGG | + | chr5.1:4289203-4289222 | MS.gene015546:intron | 40.0% | |
| CTTGGCTATATCAGCTAACA+AGG | + | chr5.1:4288648-4288667 | MS.gene015546:CDS | 40.0% | |
| CTTTGTCGGTACTATTGTGA+AGG | + | chr5.1:4289607-4289626 | MS.gene015546:intron | 40.0% | |
| GAAGAATAAGCTGTATGTCC+CGG | - | chr5.1:4289878-4289897 | None:intergenic | 40.0% | |
| GATAAGCTGTTTGTCCAAAC+AGG | + | chr5.1:4288540-4288559 | MS.gene015546:intron | 40.0% | |
| GCAACACTGAACATGTTCAT+GGG | + | chr5.1:4289944-4289963 | MS.gene015546:CDS | 40.0% | |
| GTTTGTCCAAACAGGCTTAT+TGG | + | chr5.1:4288548-4288567 | MS.gene015546:intron | 40.0% | |
| TAAAGTTGAACCGGTTGAAC+CGG | - | chr5.1:4287655-4287674 | None:intergenic | 40.0% | |
| TAATGGAGAGAACTAAGGGA+GGG | + | chr5.1:4288917-4288936 | MS.gene015546:intron | 40.0% | |
| TACAGGTTCAATTCATACCC+AGG | + | chr5.1:4289249-4289268 | MS.gene015546:intron | 40.0% | |
| TCATTTCGATCCAACCAAAC+CGG | + | chr5.1:4287633-4287652 | MS.gene015546:CDS | 40.0% | |
| TCCAACTTTGGACTTCAGAT+GGG | + | chr5.1:4289989-4290008 | MS.gene015546:CDS | 40.0% | |
| TCCCTTAAACATGTGGTTAC+AGG | + | chr5.1:4289232-4289251 | MS.gene015546:intron | 40.0% | |
| TGATGAATTCCCATCCTCAA+CGG | - | chr5.1:4290085-4290104 | None:intergenic | 40.0% | |
| TGCAACACTGAACATGTTCA+TGG | + | chr5.1:4289943-4289962 | MS.gene015546:CDS | 40.0% | |
| TTCCAACTTTGGACTTCAGA+TGG | + | chr5.1:4289988-4290007 | MS.gene015546:CDS | 40.0% | |
| ! | AAACAGGCTTATTGGCTGAT+GGG | + | chr5.1:4288556-4288575 | MS.gene015546:intron | 40.0% |
| ! | ACATACACTTAAGGCTGGTT+CGG | + | chr5.1:4288289-4288308 | MS.gene015546:intron | 40.0% |
| ! | ATTCTTCCATCGACTAGTCA+AGG | - | chr5.1:4289285-4289304 | None:intergenic | 40.0% |
| ! | TGCTTCAATCATCGGTTACA+TGG | + | chr5.1:4287698-4287717 | MS.gene015546:CDS | 40.0% |
| ! | TTCTGAAAGGAACTGGCAAT+TGG | + | chr5.1:4290034-4290053 | MS.gene015546:CDS | 40.0% |
| ! | TTCTTCCATCGACTAGTCAA+GGG | - | chr5.1:4289284-4289303 | None:intergenic | 40.0% |
| !! | CAGTGTTTTCTGAAAGGAAC+TGG | + | chr5.1:4290027-4290046 | MS.gene015546:CDS | 40.0% |
| !! | CTTCTTCTGCTGATTTCGTT+TGG | + | chr5.1:4287772-4287791 | MS.gene015546:CDS | 40.0% |
| !! | GAAGGTAATGGAGAGAACTA+AGG | + | chr5.1:4288912-4288931 | MS.gene015546:intron | 40.0% |
| !! | TACTATTGATGATGGCACCA+AGG | + | chr5.1:4287902-4287921 | MS.gene015546:CDS | 40.0% |
| !!! | AATTTTGGCTCCTCCAAAAG+TGG | + | chr5.1:4288260-4288279 | MS.gene015546:intron | 40.0% |
| AATGGAGAGAACTAAGGGAG+GGG | + | chr5.1:4288918-4288937 | MS.gene015546:intron | 45.0% | |
| ACACTGAACATGTTCATGGG+TGG | + | chr5.1:4289947-4289966 | MS.gene015546:CDS | 45.0% | |
| AGTCAAGGGATCAATTACCC+TGG | - | chr5.1:4289270-4289289 | None:intergenic | 45.0% | |
| ATCATCAAGTGCGCGAGAAT+AGG | - | chr5.1:4289446-4289465 | None:intergenic | 45.0% | |
| ATGATGAGAGGGGAAGGTAA+TGG | + | chr5.1:4288900-4288919 | MS.gene015546:intron | 45.0% | |
| ATTACGCTTCTCTGCTACTG+AGG | + | chr5.1:4289549-4289568 | MS.gene015546:intron | 45.0% | |
| CACTAAAGGTGGTCTGTGTT+TGG | + | chr5.1:4290146-4290165 | MS.gene015546:CDS | 45.0% | |
| CACTGAACATGTTCATGGGT+GGG | + | chr5.1:4289948-4289967 | MS.gene015546:CDS | 45.0% | |
| CATCAGCCAATAAGCCTGTT+TGG | - | chr5.1:4288557-4288576 | None:intergenic | 45.0% | |
| GTCAAGGGATCAATTACCCT+GGG | - | chr5.1:4289269-4289288 | None:intergenic | 45.0% | |
| GTGATTTCACCGTTGAGGAT+GGG | + | chr5.1:4290073-4290092 | MS.gene015546:CDS | 45.0% | |
| GTTTGGATTGATAGAGCCAC+GGG | + | chr5.1:4288616-4288635 | MS.gene015546:CDS | 45.0% | |
| TATTCTCGCGCACTTGATGA+TGG | + | chr5.1:4289445-4289464 | MS.gene015546:intron | 45.0% | |
| TCCTTTCAGAAAACACTGGG+AGG | - | chr5.1:4290025-4290044 | None:intergenic | 45.0% | |
| TTGCATACCTTCAGCATACC+TGG | + | chr5.1:4289812-4289831 | MS.gene015546:CDS | 45.0% | |
| ! | CAAACAGGCTTATTGGCTGA+TGG | + | chr5.1:4288555-4288574 | MS.gene015546:intron | 45.0% |
| ! | GGTTCAACCGGTTCAACTTT+AGG | + | chr5.1:4287654-4287673 | MS.gene015546:CDS | 45.0% |
| ! | GTAATGGAGAGAACTAAGGG+AGG | + | chr5.1:4288916-4288935 | MS.gene015546:intron | 45.0% |
| ! | GTTGCAAGTTGACAGATCTG+AGG | - | chr5.1:4287729-4287748 | None:intergenic | 45.0% |
| ! | TTGATCCCTTGACTAGTCGA+TGG | + | chr5.1:4289276-4289295 | MS.gene015546:intron | 45.0% |
| !! | AGATTTTGGCGAGGAGAAGA+TGG | - | chr5.1:4287821-4287840 | None:intergenic | 45.0% |
| !! | GGCTGATGGGTTTGGATATA+TGG | + | chr5.1:4288569-4288588 | MS.gene015546:intron | 45.0% |
| AATAAGCTGTATGTCCCGGC+TGG | - | chr5.1:4289874-4289893 | None:intergenic | 50.0% | |
| ACGACGTCCAAACCTCTTGT+AGG | - | chr5.1:4289920-4289939 | None:intergenic | 50.0% | |
| AGCCTGTGCGATTCCAACTT+TGG | + | chr5.1:4289977-4289996 | MS.gene015546:CDS | 50.0% | |
| ATGGAGAGAACTAAGGGAGG+GGG | + | chr5.1:4288919-4288938 | MS.gene015546:intron | 50.0% | |
| CAAACCACCAGGTATGCTGA+AGG | - | chr5.1:4289822-4289841 | None:intergenic | 50.0% | |
| CAACGGTGAAATCACCTGCA+TGG | - | chr5.1:4290068-4290087 | None:intergenic | 50.0% | |
| CATACCTTCAGCATACCTGG+TGG | + | chr5.1:4289815-4289834 | MS.gene015546:CDS | 50.0% | |
| GATTGCACGCACACTAAAGG+TGG | + | chr5.1:4290135-4290154 | MS.gene015546:CDS | 50.0% | |
| GCATACCTGGTGGTTTGAAG+TGG | + | chr5.1:4289825-4289844 | MS.gene015546:CDS | 50.0% | |
| GGTGATTTCACCGTTGAGGA+TGG | + | chr5.1:4290072-4290091 | MS.gene015546:CDS | 50.0% | |
| GTCCAAAGTTGGAATCGCAC+AGG | - | chr5.1:4289982-4290001 | None:intergenic | 50.0% | |
| TGCAGGTGATTTCACCGTTG+AGG | + | chr5.1:4290068-4290087 | MS.gene015546:CDS | 50.0% | |
| TGTATGTCCCGGCTGGAAAT+GGG | - | chr5.1:4289867-4289886 | None:intergenic | 50.0% | |
| TTGAACCGGTTGAACCGGTT+TGG | - | chr5.1:4287650-4287669 | None:intergenic | 50.0% | |
| TTGACTTCCCATTTCCAGCC+GGG | + | chr5.1:4289857-4289876 | MS.gene015546:CDS | 50.0% | |
| ! | ACCTGGTGGTTTGAAGTGGA+CGG | + | chr5.1:4289829-4289848 | MS.gene015546:CDS | 50.0% |
| ! | ATCTAGGGCAAGCCTACAAG+AGG | + | chr5.1:4289905-4289924 | MS.gene015546:CDS | 50.0% |
| ! | GCAAGTTGACAGATCTGAGG+AGG | - | chr5.1:4287726-4287745 | None:intergenic | 50.0% |
| ! | GCCCATCTGAAGTCCAAAGT+TGG | - | chr5.1:4289993-4290012 | None:intergenic | 50.0% |
| ! | GCCTCCCAGTGTTTTCTGAA+AGG | + | chr5.1:4290021-4290040 | MS.gene015546:CDS | 50.0% |
| ! | GTTGACTTCCCATTTCCAGC+CGG | + | chr5.1:4289856-4289875 | MS.gene015546:CDS | 50.0% |
| ! | TCCAACCAAACCGGTTCAAC+CGG | + | chr5.1:4287642-4287661 | MS.gene015546:CDS | 50.0% |
| !! | CACTTAAGGCTGGTTCGGAT+TGG | + | chr5.1:4288294-4288313 | MS.gene015546:intron | 50.0% |
| !! | GGCTTATTGGCTGATGGGTT+TGG | + | chr5.1:4288561-4288580 | MS.gene015546:intron | 50.0% |
| AGAGAACTAAGGGAGGGGGA+AGG | + | chr5.1:4288923-4288942 | MS.gene015546:intron | 55.0% | |
| CTGTATGTCCCGGCTGGAAA+TGG | - | chr5.1:4289868-4289887 | None:intergenic | 55.0% | |
| GCTTCTCTGCTACTGAGGCA+CGG | + | chr5.1:4289554-4289573 | MS.gene015546:intron | 55.0% | |
| GGCCGTGTCCCTTAAACATG+TGG | + | chr5.1:4289225-4289244 | MS.gene015546:intron | 55.0% | |
| GGGCAAGCCTACAAGAGGTT+TGG | + | chr5.1:4289910-4289929 | MS.gene015546:CDS | 55.0% | |
| ! | CCTGGTGGTTTGAAGTGGAC+GGG | + | chr5.1:4289830-4289849 | MS.gene015546:CDS | 55.0% |
| ! | CTGGTGGTTTGAAGTGGACG+GGG | + | chr5.1:4289831-4289850 | MS.gene015546:CDS | 55.0% |
| !! | ACCGGTTGAACCGGTTTGGT+TGG | - | chr5.1:4287646-4287665 | None:intergenic | 55.0% |
| AAGGGAGGGGGAAGGAATCG+AGG | + | chr5.1:4288931-4288950 | MS.gene015546:intron | 60.0% | |
| AGCCAAGCAAAGCTTGCCCG+TGG | - | chr5.1:4288635-4288654 | None:intergenic | 60.0% | |
| AGCCACGGGCAAGCTTTGCT+TGG | + | chr5.1:4288630-4288649 | MS.gene015546:CDS | 60.0% | |
| AGGGAGGGGGAAGGAATCGA+GGG | + | chr5.1:4288932-4288951 | MS.gene015546:intron | 60.0% | |
| AGGGGGAAGGAATCGAGGGA+TGG | + | chr5.1:4288936-4288955 | MS.gene015546:intron | 60.0% | |
| CCCGTCCACTTCAAACCACC+AGG | - | chr5.1:4289833-4289852 | None:intergenic | 60.0% | |
| AGGGACACGGCCCCCATACT+TGG | - | chr5.1:4289217-4289236 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 4287615 | 4290230 | 4287615 | ID=MS.gene015546 |
| chr5.1 | mRNA | 4287615 | 4290230 | 4287615 | ID=MS.gene015546.t1;Parent=MS.gene015546 |
| chr5.1 | exon | 4287615 | 4287923 | 4287615 | ID=MS.gene015546.t1.exon1;Parent=MS.gene015546.t1 |
| chr5.1 | CDS | 4287615 | 4287923 | 4287615 | ID=cds.MS.gene015546.t1;Parent=MS.gene015546.t1 |
| chr5.1 | exon | 4288613 | 4288734 | 4288613 | ID=MS.gene015546.t1.exon2;Parent=MS.gene015546.t1 |
| chr5.1 | CDS | 4288613 | 4288734 | 4288613 | ID=cds.MS.gene015546.t1;Parent=MS.gene015546.t1 |
| chr5.1 | exon | 4289801 | 4290230 | 4289801 | ID=MS.gene015546.t1.exon3;Parent=MS.gene015546.t1 |
| chr5.1 | CDS | 4289801 | 4290230 | 4289801 | ID=cds.MS.gene015546.t1;Parent=MS.gene015546.t1 |
| Gene Sequence |
| Protein sequence |
