Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22617.t1 | AES94102.1 | 97.2 | 286 | 5 | 1 | 1 | 286 | 1 | 283 | 1.60E-164 | 588.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22617.t1 | Q9LN77 | 67.2 | 259 | 83 | 2 | 20 | 277 | 28 | 285 | 1.9e-102 | 373.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22617.t1 | G7KDG7 | 97.2 | 286 | 5 | 1 | 1 | 286 | 1 | 283 | 1.1e-164 | 588.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22617 | MS.gene050935 | PPI |
| MS.gene22617 | MS.gene020575 | PPI |
| MS.gene22617 | MS.gene34457 | PPI |
| MS.gene054425 | MS.gene22617 | PPI |
| MS.gene41397 | MS.gene22617 | PPI |
| MS.gene22617 | MS.gene072532 | PPI |
| MS.gene22617 | MS.gene007330 | PPI |
| MS.gene22796 | MS.gene22617 | PPI |
| MS.gene40823 | MS.gene22617 | PPI |
| MS.gene22617 | MS.gene006331 | PPI |
| MS.gene22617 | MS.gene49051 | PPI |
| MS.gene007614 | MS.gene22617 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22617.t1 | MTR_5g010800 | 97.203 | 286 | 5 | 1 | 1 | 286 | 1 | 283 | 0.0 | 577 |
| MS.gene22617.t1 | MTR_4g102770 | 76.208 | 269 | 61 | 2 | 20 | 286 | 19 | 286 | 6.67e-158 | 441 |
| MS.gene22617.t1 | MTR_0002s0020 | 56.401 | 289 | 117 | 3 | 1 | 281 | 1 | 288 | 5.11e-119 | 343 |
| MS.gene22617.t1 | MTR_7g103380 | 56.314 | 293 | 112 | 5 | 1 | 280 | 1 | 290 | 1.17e-112 | 327 |
| MS.gene22617.t1 | MTR_1g101390 | 57.308 | 260 | 109 | 2 | 20 | 278 | 28 | 286 | 8.95e-112 | 325 |
| MS.gene22617.t1 | MTR_0113s0040 | 55.344 | 262 | 115 | 2 | 16 | 276 | 18 | 278 | 1.87e-110 | 321 |
| MS.gene22617.t1 | MTR_7g112560 | 24.453 | 274 | 173 | 8 | 23 | 278 | 4 | 261 | 9.90e-28 | 108 |
| MS.gene22617.t1 | MTR_4g023570 | 25.379 | 264 | 161 | 8 | 23 | 277 | 4 | 240 | 4.77e-24 | 97.8 |
| MS.gene22617.t1 | MTR_1g079260 | 34.722 | 144 | 91 | 3 | 22 | 164 | 6 | 147 | 5.22e-22 | 93.2 |
| MS.gene22617.t1 | MTR_1g079180 | 34.932 | 146 | 91 | 3 | 22 | 164 | 6 | 150 | 2.18e-21 | 91.3 |
| MS.gene22617.t1 | MTR_1g079140 | 33.117 | 154 | 96 | 4 | 13 | 161 | 6 | 157 | 6.22e-21 | 90.9 |
| MS.gene22617.t1 | MTR_1g079230 | 33.562 | 146 | 90 | 4 | 22 | 164 | 6 | 147 | 5.05e-19 | 85.1 |
| MS.gene22617.t1 | MTR_1g079380 | 32.667 | 150 | 94 | 4 | 18 | 164 | 2 | 147 | 1.23e-18 | 84.3 |
| MS.gene22617.t1 | MTR_1g079370 | 25.940 | 266 | 184 | 6 | 18 | 273 | 2 | 264 | 2.16e-18 | 83.2 |
| MS.gene22617.t1 | MTR_7g112550 | 22.414 | 290 | 185 | 9 | 15 | 273 | 2 | 282 | 2.52e-18 | 83.2 |
| MS.gene22617.t1 | MTR_1g079200 | 26.236 | 263 | 178 | 9 | 22 | 273 | 6 | 263 | 3.58e-18 | 82.4 |
| MS.gene22617.t1 | MTR_1g079460 | 25.725 | 276 | 169 | 10 | 22 | 275 | 6 | 267 | 1.73e-17 | 80.5 |
| MS.gene22617.t1 | MTR_1g100597 | 31.250 | 144 | 96 | 3 | 22 | 164 | 6 | 147 | 2.05e-17 | 80.5 |
| MS.gene22617.t1 | MTR_1g079850 | 31.973 | 147 | 95 | 3 | 22 | 164 | 6 | 151 | 4.77e-17 | 79.7 |
| MS.gene22617.t1 | MTR_1g083580 | 28.049 | 164 | 112 | 4 | 18 | 176 | 6 | 168 | 5.92e-16 | 76.6 |
| MS.gene22617.t1 | MTR_1g079410 | 29.870 | 154 | 97 | 4 | 18 | 164 | 6 | 155 | 1.02e-15 | 75.9 |
| MS.gene22617.t1 | MTR_3g452600 | 31.944 | 144 | 91 | 4 | 20 | 161 | 10 | 148 | 1.47e-14 | 72.4 |
| MS.gene22617.t1 | MTR_1g079400 | 28.571 | 161 | 102 | 4 | 12 | 164 | 4 | 159 | 4.71e-14 | 71.2 |
| MS.gene22617.t1 | MTR_1g100613 | 31.008 | 129 | 86 | 3 | 37 | 164 | 6 | 132 | 5.33e-14 | 70.5 |
| MS.gene22617.t1 | MTR_1g079250 | 30.872 | 149 | 93 | 5 | 22 | 164 | 6 | 150 | 1.88e-13 | 69.7 |
| MS.gene22617.t1 | MTR_1g079350 | 28.431 | 204 | 120 | 7 | 22 | 216 | 6 | 192 | 8.80e-13 | 67.4 |
| MS.gene22617.t1 | MTR_3g450990 | 31.852 | 135 | 83 | 5 | 20 | 152 | 10 | 137 | 6.46e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22617.t1 | AT1G12710 | 67.181 | 259 | 83 | 2 | 20 | 277 | 28 | 285 | 5.95e-128 | 365 |
| MS.gene22617.t1 | AT1G12710 | 57.807 | 301 | 83 | 3 | 20 | 277 | 28 | 327 | 6.73e-119 | 344 |
| MS.gene22617.t1 | AT3G61060 | 58.242 | 273 | 111 | 3 | 9 | 279 | 14 | 285 | 5.94e-118 | 340 |
| MS.gene22617.t1 | AT3G61060 | 58.029 | 274 | 111 | 4 | 9 | 279 | 14 | 286 | 2.10e-116 | 336 |
| MS.gene22617.t1 | AT1G63090 | 59.507 | 284 | 107 | 3 | 1 | 277 | 1 | 283 | 1.50e-114 | 332 |
| MS.gene22617.t1 | AT3G53000 | 53.333 | 285 | 120 | 3 | 1 | 273 | 1 | 284 | 1.08e-103 | 304 |
| MS.gene22617.t1 | AT5G52120 | 48.772 | 285 | 137 | 3 | 1 | 277 | 1 | 284 | 4.95e-98 | 290 |
| MS.gene22617.t1 | AT2G02360 | 34.591 | 159 | 94 | 4 | 9 | 164 | 3 | 154 | 8.89e-27 | 105 |
| MS.gene22617.t1 | AT2G02230 | 31.792 | 173 | 108 | 6 | 17 | 184 | 29 | 196 | 1.32e-23 | 98.6 |
| MS.gene22617.t1 | AT2G02240 | 34.752 | 141 | 86 | 3 | 23 | 162 | 64 | 199 | 1.62e-22 | 95.5 |
| MS.gene22617.t1 | AT1G09155 | 24.823 | 282 | 184 | 7 | 23 | 277 | 3 | 283 | 3.86e-22 | 94.0 |
| MS.gene22617.t1 | AT2G02340 | 32.927 | 164 | 100 | 5 | 18 | 176 | 34 | 192 | 4.74e-22 | 94.0 |
| MS.gene22617.t1 | AT2G02350 | 36.054 | 147 | 83 | 5 | 16 | 158 | 20 | 159 | 9.03e-22 | 92.8 |
| MS.gene22617.t1 | AT2G02250 | 30.667 | 150 | 95 | 3 | 15 | 161 | 42 | 185 | 1.71e-21 | 92.4 |
| MS.gene22617.t1 | AT2G02320 | 31.285 | 179 | 110 | 6 | 3 | 176 | 22 | 192 | 4.04e-20 | 88.6 |
| MS.gene22617.t1 | AT5G24560 | 26.347 | 167 | 112 | 4 | 22 | 187 | 5 | 161 | 1.45e-18 | 82.0 |
| MS.gene22617.t1 | AT2G02310 | 31.544 | 149 | 92 | 4 | 18 | 163 | 43 | 184 | 1.66e-18 | 84.0 |
| MS.gene22617.t1 | AT1G56250 | 24.232 | 293 | 164 | 8 | 23 | 273 | 4 | 280 | 9.63e-17 | 79.0 |
| MS.gene22617.t1 | AT1G56240 | 24.028 | 283 | 185 | 5 | 23 | 277 | 4 | 284 | 2.98e-16 | 77.4 |
| MS.gene22617.t1 | AT1G80110 | 24.242 | 264 | 181 | 9 | 20 | 273 | 1 | 255 | 4.96e-16 | 76.3 |
| MS.gene22617.t1 | AT2G02300 | 26.891 | 238 | 141 | 10 | 16 | 242 | 30 | 245 | 6.89e-13 | 67.8 |
Find 71 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGATTTACCAATCAATT+TGG | 0.149392 | 5.1:+4326147 | MS.gene22617:CDS |
| TGGTAAATCATGAAAGATTT+TGG | 0.209100 | 5.1:-4326137 | None:intergenic |
| ATTGAAGCGACGCAACTTTC+AGG | 0.233304 | 5.1:-4325989 | None:intergenic |
| CTTCTTCTGCTGATTTCGTT+TGG | 0.259520 | 5.1:+4326077 | MS.gene22617:CDS |
| GGTTCAACCGGTTCAACTTT+AGG | 0.271212 | 5.1:+4325959 | MS.gene22617:CDS |
| CTGTATGTCCCGGCTGGAAA+TGG | 0.317696 | 5.1:-4328213 | None:intergenic |
| TTCTTCTGCTGATTTCGTTT+GGG | 0.325116 | 5.1:+4326078 | MS.gene22617:CDS |
| CACTAAAGGTGGTCTGTGTT+TGG | 0.348141 | 5.1:+4328494 | MS.gene22617:CDS |
| CATGATTTACCAATCAATTT+GGG | 0.351067 | 5.1:+4326148 | MS.gene22617:CDS |
| TTTGTTGTGTGCAGAAAGTT+TGG | 0.359355 | 5.1:+4326947 | MS.gene22617:intron |
| AGCCTGTGCGATTCCAACTT+TGG | 0.369551 | 5.1:+4328325 | MS.gene22617:CDS |
| CGCTTCAATCATCGGTTACA+TGG | 0.370713 | 5.1:+4326003 | MS.gene22617:CDS |
| TTCTGAAAGGAACTGGCAAT+TGG | 0.389942 | 5.1:+4328382 | MS.gene22617:CDS |
| TTATTCTTCAGAATACATCT+AGG | 0.422202 | 5.1:+4328237 | MS.gene22617:CDS |
| TCCAACCAAACCGGTTCAAC+CGG | 0.434266 | 5.1:+4325947 | MS.gene22617:CDS |
| TAAAGTTGAACCGGTTGAAC+CGG | 0.438212 | 5.1:-4325957 | None:intergenic |
| ACGACGTCCAAACCTCTTGT+AGG | 0.439552 | 5.1:-4328265 | None:intergenic |
| GGGCAAGCCTACAAGAGGTT+TGG | 0.441598 | 5.1:+4328258 | MS.gene22617:CDS |
| GAATTGATGATAGAAGATAT+TGG | 0.446914 | 5.1:+4327034 | MS.gene22617:CDS |
| CGACTTAATACTATTGATGA+TGG | 0.447327 | 5.1:+4326199 | MS.gene22617:CDS |
| TTGAACCGGTTGAACCGGTT+TGG | 0.448850 | 5.1:-4325952 | None:intergenic |
| AGTCATAGAGAATTTGACTT+TGG | 0.459733 | 5.1:-4328454 | None:intergenic |
| ATATCATCACTGAAGAATCT+AGG | 0.462039 | 5.1:+4327061 | MS.gene22617:CDS |
| AGCCACGGGCAAGCTTTGCT+TGG | 0.464990 | 5.1:+4326978 | MS.gene22617:CDS |
| TTCCAACTTTGGACTTCAGA+TGG | 0.477540 | 5.1:+4328336 | MS.gene22617:CDS |
| TAATTCACCTAAAGTTGAAC+CGG | 0.483165 | 5.1:-4325966 | None:intergenic |
| AGTTGCGTCGCTTCAATCAT+CGG | 0.485599 | 5.1:+4325995 | MS.gene22617:CDS |
| TTGCATACCTTCAGCATACC+TGG | 0.490977 | 5.1:+4328160 | MS.gene22617:CDS |
| TGTATGTCCCGGCTGGAAAT+GGG | 0.498240 | 5.1:-4328212 | None:intergenic |
| TCATTTCGATCCAACCAAAC+CGG | 0.498725 | 5.1:+4325938 | MS.gene22617:CDS |
| TGCAACACTGAACATGTTCA+TGG | 0.501094 | 5.1:+4328291 | MS.gene22617:CDS |
| CCTGGTGGTTTGAAGTGGAC+GGG | 0.501663 | 5.1:+4328178 | MS.gene22617:CDS |
| AACAAGGGACTATCAGTACT+TGG | 0.501726 | 5.1:+4327012 | MS.gene22617:CDS |
| GGTGATTTCACCGTTGAGGA+TGG | 0.503816 | 5.1:+4328420 | MS.gene22617:CDS |
| CTTGGCTATATCAGCTAACA+AGG | 0.503821 | 5.1:+4326996 | MS.gene22617:CDS |
| ACCGGTTGAACCGGTTTGGT+TGG | 0.509700 | 5.1:-4325948 | None:intergenic |
| ATTGATTGCACGCACACTAA+AGG | 0.512444 | 5.1:+4328480 | MS.gene22617:CDS |
| CACTGAACATGTTCATGGGT+GGG | 0.526344 | 5.1:+4328296 | MS.gene22617:CDS |
| CAGTTCCTTTCAGAAAACAC+TGG | 0.526894 | 5.1:-4328374 | None:intergenic |
| GCCCATCTGAAGTCCAAAGT+TGG | 0.536214 | 5.1:-4328338 | None:intergenic |
| CCCGTCCACTTCAAACCACC+AGG | 0.538040 | 5.1:-4328178 | None:intergenic |
| AATAAGCTGTATGTCCCGGC+TGG | 0.538928 | 5.1:-4328219 | None:intergenic |
| TTGACTTCCCATTTCCAGCC+GGG | 0.542798 | 5.1:+4328205 | MS.gene22617:CDS |
| TCCAACTTTGGACTTCAGAT+GGG | 0.543088 | 5.1:+4328337 | MS.gene22617:CDS |
| GCATACCTGGTGGTTTGAAG+TGG | 0.546087 | 5.1:+4328173 | MS.gene22617:CDS |
| AGGAGAAGATGGTAATTTGT+CGG | 0.546308 | 5.1:-4326112 | None:intergenic |
| GTGATTTCACCGTTGAGGAT+GGG | 0.546700 | 5.1:+4328421 | MS.gene22617:CDS |
| TATTCTTCAGAATACATCTA+GGG | 0.555396 | 5.1:+4328238 | MS.gene22617:CDS |
| ACCTGGTGGTTTGAAGTGGA+CGG | 0.561016 | 5.1:+4328177 | MS.gene22617:CDS |
| GTTTGGATTGATAGAGCCAC+GGG | 0.562866 | 5.1:+4326964 | MS.gene22617:CDS |
| GAAGAATAAGCTGTATGTCC+CGG | 0.575375 | 5.1:-4328223 | None:intergenic |
| GTCCAAAGTTGGAATCGCAC+AGG | 0.578305 | 5.1:-4328327 | None:intergenic |
| TGCAGGTGATTTCACCGTTG+AGG | 0.581687 | 5.1:+4328416 | MS.gene22617:CDS |
| CTGGTGGTTTGAAGTGGACG+GGG | 0.591797 | 5.1:+4328179 | MS.gene22617:CDS |
| GTTGACTTCCCATTTCCAGC+CGG | 0.592053 | 5.1:+4328204 | MS.gene22617:CDS |
| AGTTCCTTTCAGAAAACACT+GGG | 0.601469 | 5.1:-4328373 | None:intergenic |
| AGTTTGGATTGATAGAGCCA+CGG | 0.603796 | 5.1:+4326963 | MS.gene22617:CDS |
| GATTGCACGCACACTAAAGG+TGG | 0.628473 | 5.1:+4328483 | MS.gene22617:CDS |
| GCAACACTGAACATGTTCAT+GGG | 0.629375 | 5.1:+4328292 | MS.gene22617:CDS |
| TGATGAATTCCCATCCTCAA+CGG | 0.629667 | 5.1:-4328430 | None:intergenic |
| ATCTAGGGCAAGCCTACAAG+AGG | 0.631041 | 5.1:+4328253 | MS.gene22617:CDS |
| CAACGGTGAAATCACCTGCA+TGG | 0.636855 | 5.1:-4328413 | None:intergenic |
| TACTATTGATGATGGCACCA+AGG | 0.640156 | 5.1:+4326207 | MS.gene22617:CDS |
| AGCCAAGCAAAGCTTGCCCG+TGG | 0.641717 | 5.1:-4326980 | None:intergenic |
| GCAAGTTGACAGATCTGAGG+AGG | 0.643594 | 5.1:-4326028 | None:intergenic |
| ACACTGAACATGTTCATGGG+TGG | 0.656933 | 5.1:+4328295 | MS.gene22617:CDS |
| CATACCTTCAGCATACCTGG+TGG | 0.660309 | 5.1:+4328163 | MS.gene22617:CDS |
| CAAACCACCAGGTATGCTGA+AGG | 0.668408 | 5.1:-4328167 | None:intergenic |
| TCCTTTCAGAAAACACTGGG+AGG | 0.675908 | 5.1:-4328370 | None:intergenic |
| GTTGCAAGTTGACAGATCTG+AGG | 0.684069 | 5.1:-4326031 | None:intergenic |
| TTGGCTATATCAGCTAACAA+GGG | 0.728498 | 5.1:+4326997 | MS.gene22617:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTATAATCTATTTAATA+GGG | + | chr5.1:4327697-4327716 | MS.gene22617:intron | 10.0% |
| !!! | AAAAATTAATTTTGAATGAT+TGG | + | chr5.1:4326401-4326420 | MS.gene22617:intron | 10.0% |
| !!! | TTATTATAAATCTATTTTAG+TGG | + | chr5.1:4328094-4328113 | MS.gene22617:intron | 10.0% |
| !! | CACATTATAATCTATTTAAT+AGG | + | chr5.1:4327696-4327715 | MS.gene22617:intron | 15.0% |
| !!! | AGTTATGATATGATATTTTT+GGG | + | chr5.1:4327307-4327326 | MS.gene22617:intron | 15.0% |
| !!! | GTATTACATAATTTTCATTA+AGG | + | chr5.1:4327491-4327510 | MS.gene22617:intron | 15.0% |
| !!! | TCTATCTTTTTCTATAAAAT+TGG | + | chr5.1:4326747-4326766 | MS.gene22617:intron | 15.0% |
| !!! | TTTTCATTAAGGAATATAAT+TGG | + | chr5.1:4327502-4327521 | MS.gene22617:intron | 15.0% |
| !! | AGAAAATCAATATGACTATT+TGG | - | chr5.1:4327723-4327742 | None:intergenic | 20.0% |
| !! | TTACATAGATAAATCTTTGT+CGG | + | chr5.1:4327941-4327960 | MS.gene22617:intron | 20.0% |
| !!! | ATTGTATTTTCTAGAATAGA+TGG | + | chr5.1:4327159-4327178 | MS.gene22617:intron | 20.0% |
| !!! | GAGTTATGATATGATATTTT+TGG | + | chr5.1:4327306-4327325 | MS.gene22617:intron | 20.0% |
| !!! | GATATTTATTGTTTTTATCG+AGG | - | chr5.1:4327677-4327696 | None:intergenic | 20.0% |
| !!! | TATACCTTTAGAATCAATTT+TGG | + | chr5.1:4326531-4326550 | MS.gene22617:intron | 20.0% |
| !!! | TTATTTTAGATGATTTAGAC+TGG | + | chr5.1:4327386-4327405 | MS.gene22617:intron | 20.0% |
| ! | AATCAATAAAGTAATCACCT+TGG | - | chr5.1:4326227-4326246 | None:intergenic | 25.0% |
| ! | AATCTAGAAAACTATGTTTG+TGG | - | chr5.1:4327463-4327482 | None:intergenic | 25.0% |
| ! | ATCTAGAAAACTATGTTTGT+GGG | - | chr5.1:4327462-4327481 | None:intergenic | 25.0% |
| ! | CATGATTTACCAATCAATTT+GGG | + | chr5.1:4326148-4326167 | MS.gene22617:CDS | 25.0% |
| ! | TATTCTTCAGAATACATCTA+GGG | + | chr5.1:4328238-4328257 | MS.gene22617:CDS | 25.0% |
| ! | TCATGATTTACCAATCAATT+TGG | + | chr5.1:4326147-4326166 | MS.gene22617:CDS | 25.0% |
| ! | TTATTCTTCAGAATACATCT+AGG | + | chr5.1:4328237-4328256 | MS.gene22617:CDS | 25.0% |
| !! | AAATGTATGTGTGCTTATTT+TGG | + | chr5.1:4326351-4326370 | MS.gene22617:intron | 25.0% |
| !! | CAAACATAGTTTTCTAGATT+TGG | + | chr5.1:4327463-4327482 | MS.gene22617:intron | 25.0% |
| !! | GAATTGATGATAGAAGATAT+TGG | + | chr5.1:4327034-4327053 | MS.gene22617:CDS | 25.0% |
| !! | GAGTTTAAAATCAATTCTAG+AGG | + | chr5.1:4326457-4326476 | MS.gene22617:intron | 25.0% |
| !! | TGGTAAATCATGAAAGATTT+TGG | - | chr5.1:4326140-4326159 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTGTGAAACTGTT+TGG | + | chr5.1:4326626-4326645 | MS.gene22617:intron | 25.0% |
| !!! | CGAGGTTTTTTTTTCAATTT+AGG | - | chr5.1:4327659-4327678 | None:intergenic | 25.0% |
| !!! | GATTTTCTGCATCTTTTTTA+TGG | + | chr5.1:4327735-4327754 | MS.gene22617:intron | 25.0% |
| !!! | GGACTGTCTTAATTTTTTTT+TGG | + | chr5.1:4327180-4327199 | MS.gene22617:intron | 25.0% |
| !!! | TAAGTTTTGTGAAACTGTTT+GGG | + | chr5.1:4326627-4326646 | MS.gene22617:intron | 25.0% |
| !!! | TGATTAGTTTAATGATGAGA+GGG | + | chr5.1:4327237-4327256 | MS.gene22617:intron | 25.0% |
| !!! | TTGATTAGTTTAATGATGAG+AGG | + | chr5.1:4327236-4327255 | MS.gene22617:intron | 25.0% |
| ATATCATCACTGAAGAATCT+AGG | + | chr5.1:4327061-4327080 | MS.gene22617:CDS | 30.0% | |
| ATCATCAACTGCGAAAATTA+AGG | - | chr5.1:4328035-4328054 | None:intergenic | 30.0% | |
| ATCCATTTCGCGAAAAATTT+AGG | - | chr5.1:4326281-4326300 | None:intergenic | 30.0% | |
| CGACTTAATACTATTGATGA+TGG | + | chr5.1:4326199-4326218 | MS.gene22617:CDS | 30.0% | |
| GACTAACACATGTTGATATT+TGG | - | chr5.1:4327543-4327562 | None:intergenic | 30.0% | |
| GATAGGACATTGTTTGAAAA+TGG | + | chr5.1:4327832-4327851 | MS.gene22617:intron | 30.0% | |
| GTGAAAATTGGTAAAGTGAT+AGG | + | chr5.1:4327815-4327834 | MS.gene22617:intron | 30.0% | |
| TAATTCACCTAAAGTTGAAC+CGG | - | chr5.1:4325969-4325988 | None:intergenic | 30.0% | |
| TCCATTTCGCGAAAAATTTA+GGG | - | chr5.1:4326280-4326299 | None:intergenic | 30.0% | |
| TCTAGAAAACTATGTTTGTG+GGG | - | chr5.1:4327461-4327480 | None:intergenic | 30.0% | |
| TGGAATCATACATACACTTA+AGG | + | chr5.1:4326566-4326585 | MS.gene22617:intron | 30.0% | |
| ! | AGTCATAGAGAATTTGACTT+TGG | - | chr5.1:4328457-4328476 | None:intergenic | 30.0% |
| ! | TCTCTTTTACCCAAATTGAT+TGG | - | chr5.1:4326160-4326179 | None:intergenic | 30.0% |
| ! | TGTATGTATGATTCCACTTT+TGG | - | chr5.1:4326562-4326581 | None:intergenic | 30.0% |
| !! | GATTAGTTTAATGATGAGAG+GGG | + | chr5.1:4327238-4327257 | MS.gene22617:intron | 30.0% |
| !!! | AATCTATTTTAGTGGTGCTT+TGG | + | chr5.1:4328102-4328121 | MS.gene22617:intron | 30.0% |
| !!! | ATTTTGGTTTAGCGTATGTT+TGG | + | chr5.1:4326367-4326386 | MS.gene22617:intron | 30.0% |
| AACAGAATTGATCACAATGC+AGG | - | chr5.1:4327128-4327147 | None:intergenic | 35.0% | |
| AACATGTGTTAGTCCAAGTA+TGG | + | chr5.1:4327549-4327568 | MS.gene22617:intron | 35.0% | |
| AACCTGTAACCACATGTTTA+AGG | - | chr5.1:4327585-4327604 | None:intergenic | 35.0% | |
| ACATGTGTTAGTCCAAGTAT+GGG | + | chr5.1:4327550-4327569 | MS.gene22617:intron | 35.0% | |
| ACCTGTAACCACATGTTTAA+GGG | - | chr5.1:4327584-4327603 | None:intergenic | 35.0% | |
| AGCAAGCATATTTACCAATG+TGG | - | chr5.1:4328009-4328028 | None:intergenic | 35.0% | |
| AGTTCCTTTCAGAAAACACT+GGG | - | chr5.1:4328376-4328395 | None:intergenic | 35.0% | |
| ATCATACATACACTTAAGGC+TGG | + | chr5.1:4326570-4326589 | MS.gene22617:intron | 35.0% | |
| CTTATCTCAGCTTATAACAC+AGG | - | chr5.1:4326873-4326892 | None:intergenic | 35.0% | |
| GACTGGAATACATTCAAGTA+AGG | + | chr5.1:4327403-4327422 | MS.gene22617:intron | 35.0% | |
| TTGGCTATATCAGCTAACAA+GGG | + | chr5.1:4326997-4327016 | MS.gene22617:CDS | 35.0% | |
| ! | AATTGGACTTTTTACCATGC+AGG | + | chr5.1:4328399-4328418 | MS.gene22617:CDS | 35.0% |
| ! | ACCCTAAATTTTTCGCGAAA+TGG | + | chr5.1:4326276-4326295 | MS.gene22617:intron | 35.0% |
| ! | AGGAGAAGATGGTAATTTGT+CGG | - | chr5.1:4326115-4326134 | None:intergenic | 35.0% |
| ! | GGAGCCAAAATTGATTCTAA+AGG | - | chr5.1:4326538-4326557 | None:intergenic | 35.0% |
| ! | TGCTCTTTTTGAATTCGCTT+GGG | - | chr5.1:4328536-4328555 | None:intergenic | 35.0% |
| ! | TTGCTCTTTTTGAATTCGCT+TGG | - | chr5.1:4328537-4328556 | None:intergenic | 35.0% |
| ! | TTGTTTGAGTTCAACCACAT+TGG | + | chr5.1:4327992-4328011 | MS.gene22617:intron | 35.0% |
| ! | TTTGTTGTGTGCAGAAAGTT+TGG | + | chr5.1:4326947-4326966 | MS.gene22617:intron | 35.0% |
| !! | AAGGTAATGGAGAGAACTAA+GGG | + | chr5.1:4327261-4327280 | MS.gene22617:intron | 35.0% |
| !! | AATCATGAAAGATTTTGGCG+AGG | - | chr5.1:4326135-4326154 | None:intergenic | 35.0% |
| !! | ATGTATGATTCCACTTTTGG+AGG | - | chr5.1:4326559-4326578 | None:intergenic | 35.0% |
| !! | CACTTGATGATGGTGAAAAT+TGG | + | chr5.1:4327803-4327822 | MS.gene22617:intron | 35.0% |
| !! | TTCTTCTGCTGATTTCGTTT+GGG | + | chr5.1:4326078-4326097 | MS.gene22617:CDS | 35.0% |
| AACAAGGGACTATCAGTACT+TGG | + | chr5.1:4327012-4327031 | MS.gene22617:CDS | 40.0% | |
| AACCACATGTTTAAGGGACA+CGG | - | chr5.1:4327578-4327597 | None:intergenic | 40.0% | |
| ACAGGTTCAATTCATACCCA+GGG | + | chr5.1:4327598-4327617 | MS.gene22617:intron | 40.0% | |
| AGTTTAATGATGAGAGGGGA+AGG | + | chr5.1:4327242-4327261 | MS.gene22617:intron | 40.0% | |
| AGTTTGGATTGATAGAGCCA+CGG | + | chr5.1:4326963-4326982 | MS.gene22617:CDS | 40.0% | |
| ATGTGTTAGTCCAAGTATGG+GGG | + | chr5.1:4327552-4327571 | MS.gene22617:intron | 40.0% | |
| ATTGATTGCACGCACACTAA+AGG | + | chr5.1:4328480-4328499 | MS.gene22617:CDS | 40.0% | |
| CAGTTCCTTTCAGAAAACAC+TGG | - | chr5.1:4328377-4328396 | None:intergenic | 40.0% | |
| CATGTGTTAGTCCAAGTATG+GGG | + | chr5.1:4327551-4327570 | MS.gene22617:intron | 40.0% | |
| CTTGGCTATATCAGCTAACA+AGG | + | chr5.1:4326996-4327015 | MS.gene22617:CDS | 40.0% | |
| CTTTGTCGGTACTATTGTGA+AGG | + | chr5.1:4327955-4327974 | MS.gene22617:intron | 40.0% | |
| GAAGAATAAGCTGTATGTCC+CGG | - | chr5.1:4328226-4328245 | None:intergenic | 40.0% | |
| GATAAGCTGTTTGTCCAAAC+AGG | + | chr5.1:4326887-4326906 | MS.gene22617:intron | 40.0% | |
| GCAACACTGAACATGTTCAT+GGG | + | chr5.1:4328292-4328311 | MS.gene22617:CDS | 40.0% | |
| GTTTGTCCAAACAGGCTTAT+TGG | + | chr5.1:4326895-4326914 | MS.gene22617:intron | 40.0% | |
| TAAAGTTGAACCGGTTGAAC+CGG | - | chr5.1:4325960-4325979 | None:intergenic | 40.0% | |
| TAATGGAGAGAACTAAGGGA+GGG | + | chr5.1:4327265-4327284 | MS.gene22617:intron | 40.0% | |
| TACAGGTTCAATTCATACCC+AGG | + | chr5.1:4327597-4327616 | MS.gene22617:intron | 40.0% | |
| TCATTTCGATCCAACCAAAC+CGG | + | chr5.1:4325938-4325957 | MS.gene22617:CDS | 40.0% | |
| TCCAACTTTGGACTTCAGAT+GGG | + | chr5.1:4328337-4328356 | MS.gene22617:CDS | 40.0% | |
| TCCCTTAAACATGTGGTTAC+AGG | + | chr5.1:4327580-4327599 | MS.gene22617:intron | 40.0% | |
| TGATGAATTCCCATCCTCAA+CGG | - | chr5.1:4328433-4328452 | None:intergenic | 40.0% | |
| TGCAACACTGAACATGTTCA+TGG | + | chr5.1:4328291-4328310 | MS.gene22617:CDS | 40.0% | |
| TTCCAACTTTGGACTTCAGA+TGG | + | chr5.1:4328336-4328355 | MS.gene22617:CDS | 40.0% | |
| ! | AAACAGGCTTATTGGCTGAT+GGG | + | chr5.1:4326903-4326922 | MS.gene22617:intron | 40.0% |
| ! | ACATACACTTAAGGCTGGTT+CGG | + | chr5.1:4326575-4326594 | MS.gene22617:intron | 40.0% |
| ! | ATTCTTCCATCGACTAGTCA+AGG | - | chr5.1:4327633-4327652 | None:intergenic | 40.0% |
| ! | TTCTGAAAGGAACTGGCAAT+TGG | + | chr5.1:4328382-4328401 | MS.gene22617:CDS | 40.0% |
| ! | TTCTTCCATCGACTAGTCAA+GGG | - | chr5.1:4327632-4327651 | None:intergenic | 40.0% |
| !! | CAGTGTTTTCTGAAAGGAAC+TGG | + | chr5.1:4328375-4328394 | MS.gene22617:CDS | 40.0% |
| !! | CTTCTTCTGCTGATTTCGTT+TGG | + | chr5.1:4326077-4326096 | MS.gene22617:CDS | 40.0% |
| !! | GAAGGTAATGGAGAGAACTA+AGG | + | chr5.1:4327260-4327279 | MS.gene22617:intron | 40.0% |
| !! | TACTATTGATGATGGCACCA+AGG | + | chr5.1:4326207-4326226 | MS.gene22617:CDS | 40.0% |
| !!! | AATTTTGGCTCCTCCAAAAG+TGG | + | chr5.1:4326546-4326565 | MS.gene22617:intron | 40.0% |
| AATGGAGAGAACTAAGGGAG+GGG | + | chr5.1:4327266-4327285 | MS.gene22617:intron | 45.0% | |
| ACACTGAACATGTTCATGGG+TGG | + | chr5.1:4328295-4328314 | MS.gene22617:CDS | 45.0% | |
| AGTCAAGGGATCAATTACCC+TGG | - | chr5.1:4327618-4327637 | None:intergenic | 45.0% | |
| AGTTGCGTCGCTTCAATCAT+CGG | + | chr5.1:4325995-4326014 | MS.gene22617:CDS | 45.0% | |
| ATCATCAAGTGCGCGAGAAT+AGG | - | chr5.1:4327794-4327813 | None:intergenic | 45.0% | |
| ATGATGAGAGGGGAAGGTAA+TGG | + | chr5.1:4327248-4327267 | MS.gene22617:intron | 45.0% | |
| ATTACGCTTCTCTGCTACTG+AGG | + | chr5.1:4327897-4327916 | MS.gene22617:intron | 45.0% | |
| ATTGAAGCGACGCAACTTTC+AGG | - | chr5.1:4325992-4326011 | None:intergenic | 45.0% | |
| CACTAAAGGTGGTCTGTGTT+TGG | + | chr5.1:4328494-4328513 | MS.gene22617:CDS | 45.0% | |
| CACTGAACATGTTCATGGGT+GGG | + | chr5.1:4328296-4328315 | MS.gene22617:CDS | 45.0% | |
| CATCAGCCAATAAGCCTGTT+TGG | - | chr5.1:4326904-4326923 | None:intergenic | 45.0% | |
| GTCAAGGGATCAATTACCCT+GGG | - | chr5.1:4327617-4327636 | None:intergenic | 45.0% | |
| GTGATTTCACCGTTGAGGAT+GGG | + | chr5.1:4328421-4328440 | MS.gene22617:CDS | 45.0% | |
| GTTTGGATTGATAGAGCCAC+GGG | + | chr5.1:4326964-4326983 | MS.gene22617:CDS | 45.0% | |
| TATTCTCGCGCACTTGATGA+TGG | + | chr5.1:4327793-4327812 | MS.gene22617:intron | 45.0% | |
| TCCTTTCAGAAAACACTGGG+AGG | - | chr5.1:4328373-4328392 | None:intergenic | 45.0% | |
| TTGCATACCTTCAGCATACC+TGG | + | chr5.1:4328160-4328179 | MS.gene22617:CDS | 45.0% | |
| ! | CAAACAGGCTTATTGGCTGA+TGG | + | chr5.1:4326902-4326921 | MS.gene22617:intron | 45.0% |
| ! | CGCTTCAATCATCGGTTACA+TGG | + | chr5.1:4326003-4326022 | MS.gene22617:CDS | 45.0% |
| ! | GGTTCAACCGGTTCAACTTT+AGG | + | chr5.1:4325959-4325978 | MS.gene22617:CDS | 45.0% |
| ! | GTAATGGAGAGAACTAAGGG+AGG | + | chr5.1:4327264-4327283 | MS.gene22617:intron | 45.0% |
| ! | GTTGCAAGTTGACAGATCTG+AGG | - | chr5.1:4326034-4326053 | None:intergenic | 45.0% |
| ! | TTGATCCCTTGACTAGTCGA+TGG | + | chr5.1:4327624-4327643 | MS.gene22617:intron | 45.0% |
| !! | AGATTTTGGCGAGGAGAAGA+TGG | - | chr5.1:4326126-4326145 | None:intergenic | 45.0% |
| !! | GGCTGATGGGTTTGGATATA+TGG | + | chr5.1:4326916-4326935 | MS.gene22617:intron | 45.0% |
| AATAAGCTGTATGTCCCGGC+TGG | - | chr5.1:4328222-4328241 | None:intergenic | 50.0% | |
| ACGACGTCCAAACCTCTTGT+AGG | - | chr5.1:4328268-4328287 | None:intergenic | 50.0% | |
| AGCCTGTGCGATTCCAACTT+TGG | + | chr5.1:4328325-4328344 | MS.gene22617:CDS | 50.0% | |
| ATGGAGAGAACTAAGGGAGG+GGG | + | chr5.1:4327267-4327286 | MS.gene22617:intron | 50.0% | |
| CAAACCACCAGGTATGCTGA+AGG | - | chr5.1:4328170-4328189 | None:intergenic | 50.0% | |
| CAACGGTGAAATCACCTGCA+TGG | - | chr5.1:4328416-4328435 | None:intergenic | 50.0% | |
| CATACCTTCAGCATACCTGG+TGG | + | chr5.1:4328163-4328182 | MS.gene22617:CDS | 50.0% | |
| GATTGCACGCACACTAAAGG+TGG | + | chr5.1:4328483-4328502 | MS.gene22617:CDS | 50.0% | |
| GCATACCTGGTGGTTTGAAG+TGG | + | chr5.1:4328173-4328192 | MS.gene22617:CDS | 50.0% | |
| GGTGATTTCACCGTTGAGGA+TGG | + | chr5.1:4328420-4328439 | MS.gene22617:CDS | 50.0% | |
| GTCCAAAGTTGGAATCGCAC+AGG | - | chr5.1:4328330-4328349 | None:intergenic | 50.0% | |
| TGCAGGTGATTTCACCGTTG+AGG | + | chr5.1:4328416-4328435 | MS.gene22617:CDS | 50.0% | |
| TGTATGTCCCGGCTGGAAAT+GGG | - | chr5.1:4328215-4328234 | None:intergenic | 50.0% | |
| TTGAACCGGTTGAACCGGTT+TGG | - | chr5.1:4325955-4325974 | None:intergenic | 50.0% | |
| TTGACTTCCCATTTCCAGCC+GGG | + | chr5.1:4328205-4328224 | MS.gene22617:CDS | 50.0% | |
| ! | ACCTGGTGGTTTGAAGTGGA+CGG | + | chr5.1:4328177-4328196 | MS.gene22617:CDS | 50.0% |
| ! | ATCTAGGGCAAGCCTACAAG+AGG | + | chr5.1:4328253-4328272 | MS.gene22617:CDS | 50.0% |
| ! | GCAAGTTGACAGATCTGAGG+AGG | - | chr5.1:4326031-4326050 | None:intergenic | 50.0% |
| ! | GCCCATCTGAAGTCCAAAGT+TGG | - | chr5.1:4328341-4328360 | None:intergenic | 50.0% |
| ! | GCCTCCCAGTGTTTTCTGAA+AGG | + | chr5.1:4328369-4328388 | MS.gene22617:CDS | 50.0% |
| ! | GTTGACTTCCCATTTCCAGC+CGG | + | chr5.1:4328204-4328223 | MS.gene22617:CDS | 50.0% |
| ! | TCCAACCAAACCGGTTCAAC+CGG | + | chr5.1:4325947-4325966 | MS.gene22617:CDS | 50.0% |
| !! | CACTTAAGGCTGGTTCGGAT+TGG | + | chr5.1:4326580-4326599 | MS.gene22617:intron | 50.0% |
| !! | GGCTTATTGGCTGATGGGTT+TGG | + | chr5.1:4326908-4326927 | MS.gene22617:intron | 50.0% |
| AGAGAACTAAGGGAGGGGGA+AGG | + | chr5.1:4327271-4327290 | MS.gene22617:intron | 55.0% | |
| CTGTATGTCCCGGCTGGAAA+TGG | - | chr5.1:4328216-4328235 | None:intergenic | 55.0% | |
| GCTTCTCTGCTACTGAGGCA+CGG | + | chr5.1:4327902-4327921 | MS.gene22617:intron | 55.0% | |
| GGCCGTGTCCCTTAAACATG+TGG | + | chr5.1:4327573-4327592 | MS.gene22617:intron | 55.0% | |
| GGGCAAGCCTACAAGAGGTT+TGG | + | chr5.1:4328258-4328277 | MS.gene22617:CDS | 55.0% | |
| ! | CCTGGTGGTTTGAAGTGGAC+GGG | + | chr5.1:4328178-4328197 | MS.gene22617:CDS | 55.0% |
| ! | CTGGTGGTTTGAAGTGGACG+GGG | + | chr5.1:4328179-4328198 | MS.gene22617:CDS | 55.0% |
| !! | ACCGGTTGAACCGGTTTGGT+TGG | - | chr5.1:4325951-4325970 | None:intergenic | 55.0% |
| AAGGGAGGGGGAAGGAATCG+AGG | + | chr5.1:4327279-4327298 | MS.gene22617:intron | 60.0% | |
| AGCCAAGCAAAGCTTGCCCG+TGG | - | chr5.1:4326983-4327002 | None:intergenic | 60.0% | |
| AGCCACGGGCAAGCTTTGCT+TGG | + | chr5.1:4326978-4326997 | MS.gene22617:CDS | 60.0% | |
| AGGGAGGGGGAAGGAATCGA+GGG | + | chr5.1:4327280-4327299 | MS.gene22617:intron | 60.0% | |
| AGGGGGAAGGAATCGAGGGA+TGG | + | chr5.1:4327284-4327303 | MS.gene22617:intron | 60.0% | |
| CCCGTCCACTTCAAACCACC+AGG | - | chr5.1:4328181-4328200 | None:intergenic | 60.0% | |
| AGGGACACGGCCCCCATACT+TGG | - | chr5.1:4327565-4327584 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 4325920 | 4328578 | 4325920 | ID=MS.gene22617 |
| chr5.1 | mRNA | 4325920 | 4328578 | 4325920 | ID=MS.gene22617.t1;Parent=MS.gene22617 |
| chr5.1 | exon | 4325920 | 4326228 | 4325920 | ID=MS.gene22617.t1.exon1;Parent=MS.gene22617.t1 |
| chr5.1 | CDS | 4325920 | 4326228 | 4325920 | ID=cds.MS.gene22617.t1;Parent=MS.gene22617.t1 |
| chr5.1 | exon | 4326961 | 4327082 | 4326961 | ID=MS.gene22617.t1.exon2;Parent=MS.gene22617.t1 |
| chr5.1 | CDS | 4326961 | 4327082 | 4326961 | ID=cds.MS.gene22617.t1;Parent=MS.gene22617.t1 |
| chr5.1 | exon | 4328149 | 4328578 | 4328149 | ID=MS.gene22617.t1.exon3;Parent=MS.gene22617.t1 |
| chr5.1 | CDS | 4328149 | 4328578 | 4328149 | ID=cds.MS.gene22617.t1;Parent=MS.gene22617.t1 |
| Gene Sequence |
| Protein sequence |
