Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20125.t1 | AES94102.1 | 97.2 | 286 | 5 | 1 | 1 | 286 | 1 | 283 | 1.60E-164 | 588.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20125.t1 | Q9LN77 | 67.2 | 259 | 83 | 2 | 20 | 277 | 28 | 285 | 1.9e-102 | 373.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20125.t1 | G7KDG7 | 97.2 | 286 | 5 | 1 | 1 | 286 | 1 | 283 | 1.1e-164 | 588.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006331 | MS.gene20125 | PPI |
| MS.gene054425 | MS.gene20125 | PPI |
| MS.gene41397 | MS.gene20125 | PPI |
| MS.gene007330 | MS.gene20125 | PPI |
| MS.gene20125 | MS.gene072532 | PPI |
| MS.gene20125 | MS.gene49051 | PPI |
| MS.gene22796 | MS.gene20125 | PPI |
| MS.gene40823 | MS.gene20125 | PPI |
| MS.gene20125 | MS.gene050935 | PPI |
| MS.gene34457 | MS.gene20125 | PPI |
| MS.gene007614 | MS.gene20125 | PPI |
| MS.gene020575 | MS.gene20125 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20125.t1 | MTR_5g010800 | 97.203 | 286 | 5 | 1 | 1 | 286 | 1 | 283 | 0.0 | 577 |
| MS.gene20125.t1 | MTR_4g102770 | 76.208 | 269 | 61 | 2 | 20 | 286 | 19 | 286 | 6.67e-158 | 441 |
| MS.gene20125.t1 | MTR_0002s0020 | 56.401 | 289 | 117 | 3 | 1 | 281 | 1 | 288 | 5.11e-119 | 343 |
| MS.gene20125.t1 | MTR_7g103380 | 56.314 | 293 | 112 | 5 | 1 | 280 | 1 | 290 | 1.17e-112 | 327 |
| MS.gene20125.t1 | MTR_1g101390 | 57.308 | 260 | 109 | 2 | 20 | 278 | 28 | 286 | 8.95e-112 | 325 |
| MS.gene20125.t1 | MTR_0113s0040 | 55.344 | 262 | 115 | 2 | 16 | 276 | 18 | 278 | 1.87e-110 | 321 |
| MS.gene20125.t1 | MTR_7g112560 | 24.453 | 274 | 173 | 8 | 23 | 278 | 4 | 261 | 9.90e-28 | 108 |
| MS.gene20125.t1 | MTR_4g023570 | 25.379 | 264 | 161 | 8 | 23 | 277 | 4 | 240 | 4.77e-24 | 97.8 |
| MS.gene20125.t1 | MTR_1g079260 | 34.722 | 144 | 91 | 3 | 22 | 164 | 6 | 147 | 5.22e-22 | 93.2 |
| MS.gene20125.t1 | MTR_1g079180 | 34.932 | 146 | 91 | 3 | 22 | 164 | 6 | 150 | 2.18e-21 | 91.3 |
| MS.gene20125.t1 | MTR_1g079140 | 33.117 | 154 | 96 | 4 | 13 | 161 | 6 | 157 | 6.22e-21 | 90.9 |
| MS.gene20125.t1 | MTR_1g079230 | 33.562 | 146 | 90 | 4 | 22 | 164 | 6 | 147 | 5.05e-19 | 85.1 |
| MS.gene20125.t1 | MTR_1g079380 | 32.667 | 150 | 94 | 4 | 18 | 164 | 2 | 147 | 1.23e-18 | 84.3 |
| MS.gene20125.t1 | MTR_1g079370 | 25.940 | 266 | 184 | 6 | 18 | 273 | 2 | 264 | 2.16e-18 | 83.2 |
| MS.gene20125.t1 | MTR_7g112550 | 22.414 | 290 | 185 | 9 | 15 | 273 | 2 | 282 | 2.52e-18 | 83.2 |
| MS.gene20125.t1 | MTR_1g079200 | 26.236 | 263 | 178 | 9 | 22 | 273 | 6 | 263 | 3.58e-18 | 82.4 |
| MS.gene20125.t1 | MTR_1g079460 | 25.725 | 276 | 169 | 10 | 22 | 275 | 6 | 267 | 1.73e-17 | 80.5 |
| MS.gene20125.t1 | MTR_1g100597 | 31.250 | 144 | 96 | 3 | 22 | 164 | 6 | 147 | 2.05e-17 | 80.5 |
| MS.gene20125.t1 | MTR_1g079850 | 31.973 | 147 | 95 | 3 | 22 | 164 | 6 | 151 | 4.77e-17 | 79.7 |
| MS.gene20125.t1 | MTR_1g083580 | 28.049 | 164 | 112 | 4 | 18 | 176 | 6 | 168 | 5.92e-16 | 76.6 |
| MS.gene20125.t1 | MTR_1g079410 | 29.870 | 154 | 97 | 4 | 18 | 164 | 6 | 155 | 1.02e-15 | 75.9 |
| MS.gene20125.t1 | MTR_3g452600 | 31.944 | 144 | 91 | 4 | 20 | 161 | 10 | 148 | 1.47e-14 | 72.4 |
| MS.gene20125.t1 | MTR_1g079400 | 28.571 | 161 | 102 | 4 | 12 | 164 | 4 | 159 | 4.71e-14 | 71.2 |
| MS.gene20125.t1 | MTR_1g100613 | 31.008 | 129 | 86 | 3 | 37 | 164 | 6 | 132 | 5.33e-14 | 70.5 |
| MS.gene20125.t1 | MTR_1g079250 | 30.872 | 149 | 93 | 5 | 22 | 164 | 6 | 150 | 1.88e-13 | 69.7 |
| MS.gene20125.t1 | MTR_1g079350 | 28.431 | 204 | 120 | 7 | 22 | 216 | 6 | 192 | 8.80e-13 | 67.4 |
| MS.gene20125.t1 | MTR_3g450990 | 31.852 | 135 | 83 | 5 | 20 | 152 | 10 | 137 | 6.46e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20125.t1 | AT1G12710 | 67.181 | 259 | 83 | 2 | 20 | 277 | 28 | 285 | 5.95e-128 | 365 |
| MS.gene20125.t1 | AT1G12710 | 57.807 | 301 | 83 | 3 | 20 | 277 | 28 | 327 | 6.73e-119 | 344 |
| MS.gene20125.t1 | AT3G61060 | 58.242 | 273 | 111 | 3 | 9 | 279 | 14 | 285 | 5.94e-118 | 340 |
| MS.gene20125.t1 | AT3G61060 | 58.029 | 274 | 111 | 4 | 9 | 279 | 14 | 286 | 2.10e-116 | 336 |
| MS.gene20125.t1 | AT1G63090 | 59.507 | 284 | 107 | 3 | 1 | 277 | 1 | 283 | 1.50e-114 | 332 |
| MS.gene20125.t1 | AT3G53000 | 53.333 | 285 | 120 | 3 | 1 | 273 | 1 | 284 | 1.08e-103 | 304 |
| MS.gene20125.t1 | AT5G52120 | 48.772 | 285 | 137 | 3 | 1 | 277 | 1 | 284 | 4.95e-98 | 290 |
| MS.gene20125.t1 | AT2G02360 | 34.591 | 159 | 94 | 4 | 9 | 164 | 3 | 154 | 8.89e-27 | 105 |
| MS.gene20125.t1 | AT2G02230 | 31.792 | 173 | 108 | 6 | 17 | 184 | 29 | 196 | 1.32e-23 | 98.6 |
| MS.gene20125.t1 | AT2G02240 | 34.752 | 141 | 86 | 3 | 23 | 162 | 64 | 199 | 1.62e-22 | 95.5 |
| MS.gene20125.t1 | AT1G09155 | 24.823 | 282 | 184 | 7 | 23 | 277 | 3 | 283 | 3.86e-22 | 94.0 |
| MS.gene20125.t1 | AT2G02340 | 32.927 | 164 | 100 | 5 | 18 | 176 | 34 | 192 | 4.74e-22 | 94.0 |
| MS.gene20125.t1 | AT2G02350 | 36.054 | 147 | 83 | 5 | 16 | 158 | 20 | 159 | 9.03e-22 | 92.8 |
| MS.gene20125.t1 | AT2G02250 | 30.667 | 150 | 95 | 3 | 15 | 161 | 42 | 185 | 1.71e-21 | 92.4 |
| MS.gene20125.t1 | AT2G02320 | 31.285 | 179 | 110 | 6 | 3 | 176 | 22 | 192 | 4.04e-20 | 88.6 |
| MS.gene20125.t1 | AT5G24560 | 26.347 | 167 | 112 | 4 | 22 | 187 | 5 | 161 | 1.45e-18 | 82.0 |
| MS.gene20125.t1 | AT2G02310 | 31.544 | 149 | 92 | 4 | 18 | 163 | 43 | 184 | 1.66e-18 | 84.0 |
| MS.gene20125.t1 | AT1G56250 | 24.232 | 293 | 164 | 8 | 23 | 273 | 4 | 280 | 9.63e-17 | 79.0 |
| MS.gene20125.t1 | AT1G56240 | 24.028 | 283 | 185 | 5 | 23 | 277 | 4 | 284 | 2.98e-16 | 77.4 |
| MS.gene20125.t1 | AT1G80110 | 24.242 | 264 | 181 | 9 | 20 | 273 | 1 | 255 | 4.96e-16 | 76.3 |
| MS.gene20125.t1 | AT2G02300 | 26.891 | 238 | 141 | 10 | 16 | 242 | 30 | 245 | 6.89e-13 | 67.8 |
Find 71 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGATTTACCAATCAATT+TGG | 0.149392 | 5.4:+5040878 | MS.gene20125:CDS |
| TGGTAAATCATGAAAGATTT+TGG | 0.209100 | 5.4:-5040868 | None:intergenic |
| ATTGAAGCAACGCAACTTTC+AGG | 0.221705 | 5.4:-5040720 | None:intergenic |
| CTTCTTCTGCTGATTTCGTT+TGG | 0.259520 | 5.4:+5040808 | MS.gene20125:CDS |
| GGTTCAACCGGTTCAACTTT+AGG | 0.271212 | 5.4:+5040690 | MS.gene20125:CDS |
| CTGTATGTCCCGGCTGGAAA+TGG | 0.317696 | 5.4:-5042897 | None:intergenic |
| TTCTTCTGCTGATTTCGTTT+GGG | 0.325116 | 5.4:+5040809 | MS.gene20125:CDS |
| CACTAAAGGTGGTCTGTGTT+TGG | 0.348141 | 5.4:+5043178 | MS.gene20125:CDS |
| CATGATTTACCAATCAATTT+GGG | 0.351067 | 5.4:+5040879 | MS.gene20125:CDS |
| TTTGTTGTGTGCAGAAAGTT+TGG | 0.359355 | 5.4:+5041631 | MS.gene20125:intron |
| AGCCTGTGCGATTCCAACTT+TGG | 0.369551 | 5.4:+5043009 | MS.gene20125:CDS |
| TTCTGAAAGGAACTGGCAAT+TGG | 0.389942 | 5.4:+5043066 | MS.gene20125:CDS |
| TGCTTCAATCATCGGTTACA+TGG | 0.409316 | 5.4:+5040734 | MS.gene20125:CDS |
| TTATTCTTCAGAATACATCT+AGG | 0.422202 | 5.4:+5042921 | MS.gene20125:CDS |
| TCCAACCAAACCGGTTCAAC+CGG | 0.434266 | 5.4:+5040678 | MS.gene20125:CDS |
| TAAAGTTGAACCGGTTGAAC+CGG | 0.438212 | 5.4:-5040688 | None:intergenic |
| ACGACGTCCAAACCTCTTGT+AGG | 0.439552 | 5.4:-5042949 | None:intergenic |
| GGGCAAGCCTACAAGAGGTT+TGG | 0.441598 | 5.4:+5042942 | MS.gene20125:CDS |
| GAATTGATGATAGAAGATAT+TGG | 0.446914 | 5.4:+5041718 | MS.gene20125:CDS |
| CGACTTAATACTATTGATGA+TGG | 0.447327 | 5.4:+5040930 | MS.gene20125:CDS |
| TTGAACCGGTTGAACCGGTT+TGG | 0.448850 | 5.4:-5040683 | None:intergenic |
| AGTCATAGAGAATTTGACTT+TGG | 0.459733 | 5.4:-5043138 | None:intergenic |
| ATATCATCACTGAAGAATCT+AGG | 0.462039 | 5.4:+5041745 | MS.gene20125:CDS |
| AGCCACGGGCAAGCTTTGCT+TGG | 0.464990 | 5.4:+5041662 | MS.gene20125:CDS |
| TTCCAACTTTGGACTTCAGA+TGG | 0.477540 | 5.4:+5043020 | MS.gene20125:CDS |
| TAATTCACCTAAAGTTGAAC+CGG | 0.483165 | 5.4:-5040697 | None:intergenic |
| TTGCATACCTTCAGCATACC+TGG | 0.490977 | 5.4:+5042844 | MS.gene20125:CDS |
| TGTATGTCCCGGCTGGAAAT+GGG | 0.498240 | 5.4:-5042896 | None:intergenic |
| TCATTTCGATCCAACCAAAC+CGG | 0.498725 | 5.4:+5040669 | MS.gene20125:CDS |
| TGCAACACTGAACATGTTCA+TGG | 0.501094 | 5.4:+5042975 | MS.gene20125:CDS |
| CCTGGTGGTTTGAAGTGGAC+GGG | 0.501663 | 5.4:+5042862 | MS.gene20125:CDS |
| AACAAGGGACTATCAGTACT+TGG | 0.501726 | 5.4:+5041696 | MS.gene20125:CDS |
| GGTGATTTCACCGTTGAGGA+TGG | 0.503816 | 5.4:+5043104 | MS.gene20125:CDS |
| CTTGGCTATATCAGCTAACA+AGG | 0.503821 | 5.4:+5041680 | MS.gene20125:CDS |
| AGTTGCGTTGCTTCAATCAT+CGG | 0.506036 | 5.4:+5040726 | MS.gene20125:CDS |
| ACCGGTTGAACCGGTTTGGT+TGG | 0.509700 | 5.4:-5040679 | None:intergenic |
| ATTGATTGCACGCACACTAA+AGG | 0.512444 | 5.4:+5043164 | MS.gene20125:CDS |
| CACTGAACATGTTCATGGGT+GGG | 0.526344 | 5.4:+5042980 | MS.gene20125:CDS |
| CAGTTCCTTTCAGAAAACAC+TGG | 0.526894 | 5.4:-5043058 | None:intergenic |
| GCCCATCTGAAGTCCAAAGT+TGG | 0.536214 | 5.4:-5043022 | None:intergenic |
| CCCGTCCACTTCAAACCACC+AGG | 0.538040 | 5.4:-5042862 | None:intergenic |
| AATAAGCTGTATGTCCCGGC+TGG | 0.538928 | 5.4:-5042903 | None:intergenic |
| TTGACTTCCCATTTCCAGCC+GGG | 0.542798 | 5.4:+5042889 | MS.gene20125:CDS |
| TCCAACTTTGGACTTCAGAT+GGG | 0.543088 | 5.4:+5043021 | MS.gene20125:CDS |
| GCATACCTGGTGGTTTGAAG+TGG | 0.546087 | 5.4:+5042857 | MS.gene20125:CDS |
| AGGAGAAGATGGTAATTTGT+CGG | 0.546308 | 5.4:-5040843 | None:intergenic |
| GTGATTTCACCGTTGAGGAT+GGG | 0.546700 | 5.4:+5043105 | MS.gene20125:CDS |
| TATTCTTCAGAATACATCTA+GGG | 0.555396 | 5.4:+5042922 | MS.gene20125:CDS |
| ACCTGGTGGTTTGAAGTGGA+CGG | 0.561016 | 5.4:+5042861 | MS.gene20125:CDS |
| GTTTGGATTGATAGAGCCAC+GGG | 0.562866 | 5.4:+5041648 | MS.gene20125:CDS |
| GAAGAATAAGCTGTATGTCC+CGG | 0.575375 | 5.4:-5042907 | None:intergenic |
| GTCCAAAGTTGGAATCGCAC+AGG | 0.578305 | 5.4:-5043011 | None:intergenic |
| TGCAGGTGATTTCACCGTTG+AGG | 0.581687 | 5.4:+5043100 | MS.gene20125:CDS |
| CTGGTGGTTTGAAGTGGACG+GGG | 0.591797 | 5.4:+5042863 | MS.gene20125:CDS |
| GTTGACTTCCCATTTCCAGC+CGG | 0.592053 | 5.4:+5042888 | MS.gene20125:CDS |
| AGTTCCTTTCAGAAAACACT+GGG | 0.601469 | 5.4:-5043057 | None:intergenic |
| AGTTTGGATTGATAGAGCCA+CGG | 0.603796 | 5.4:+5041647 | MS.gene20125:CDS |
| GATTGCACGCACACTAAAGG+TGG | 0.628473 | 5.4:+5043167 | MS.gene20125:CDS |
| GCAACACTGAACATGTTCAT+GGG | 0.629375 | 5.4:+5042976 | MS.gene20125:CDS |
| TGATGAATTCCCATCCTCAA+CGG | 0.629667 | 5.4:-5043114 | None:intergenic |
| ATCTAGGGCAAGCCTACAAG+AGG | 0.631041 | 5.4:+5042937 | MS.gene20125:CDS |
| CAACGGTGAAATCACCTGCA+TGG | 0.636855 | 5.4:-5043097 | None:intergenic |
| TACTATTGATGATGGCACCA+AGG | 0.640156 | 5.4:+5040938 | MS.gene20125:CDS |
| AGCCAAGCAAAGCTTGCCCG+TGG | 0.641717 | 5.4:-5041664 | None:intergenic |
| GCAAGTTGACAGATCTGAGG+AGG | 0.643594 | 5.4:-5040759 | None:intergenic |
| ACACTGAACATGTTCATGGG+TGG | 0.656933 | 5.4:+5042979 | MS.gene20125:CDS |
| CATACCTTCAGCATACCTGG+TGG | 0.660309 | 5.4:+5042847 | MS.gene20125:CDS |
| CAAACCACCAGGTATGCTGA+AGG | 0.668408 | 5.4:-5042851 | None:intergenic |
| TCCTTTCAGAAAACACTGGG+AGG | 0.675908 | 5.4:-5043054 | None:intergenic |
| GTTGCAAGTTGACAGATCTG+AGG | 0.684069 | 5.4:-5040762 | None:intergenic |
| TTGGCTATATCAGCTAACAA+GGG | 0.728498 | 5.4:+5041681 | MS.gene20125:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTATAATCTATTTAATA+GGG | + | chr5.4:5042381-5042400 | MS.gene20125:intron | 10.0% |
| !!! | AAAAATTAATTTTGAATGAT+TGG | + | chr5.4:5041147-5041166 | MS.gene20125:intron | 10.0% |
| !!! | TTATTATAAATCTATTTTAG+TGG | + | chr5.4:5042778-5042797 | MS.gene20125:intron | 10.0% |
| !! | CACATTATAATCTATTTAAT+AGG | + | chr5.4:5042380-5042399 | MS.gene20125:intron | 15.0% |
| !!! | AGTTATGATATGATATTTTT+GGG | + | chr5.4:5041991-5042010 | MS.gene20125:intron | 15.0% |
| !!! | GTATTACATAATTTTCATTA+AGG | + | chr5.4:5042175-5042194 | MS.gene20125:intron | 15.0% |
| !!! | TCTATCTTTTTCTATAAAAT+TGG | + | chr5.4:5041492-5041511 | MS.gene20125:intron | 15.0% |
| !!! | TTTTCATTAAGGAATATAAT+TGG | + | chr5.4:5042186-5042205 | MS.gene20125:intron | 15.0% |
| !! | TTACATAGATAAATCTTTGT+CGG | + | chr5.4:5042625-5042644 | MS.gene20125:intron | 20.0% |
| !!! | ATTGTATTTTCTAGAATAGA+TGG | + | chr5.4:5041843-5041862 | MS.gene20125:intron | 20.0% |
| !!! | GAGTTATGATATGATATTTT+TGG | + | chr5.4:5041990-5042009 | MS.gene20125:intron | 20.0% |
| !!! | GATATTTATTGTTTTTATCG+AGG | - | chr5.4:5042361-5042380 | None:intergenic | 20.0% |
| !!! | TATACCTTTAGAATCAATTT+TGG | + | chr5.4:5041277-5041296 | MS.gene20125:intron | 20.0% |
| !!! | TTATTTTAGATGATTTAGAC+TGG | + | chr5.4:5042070-5042089 | MS.gene20125:intron | 20.0% |
| ! | AATCTAGAAAACTATGTTTG+TGG | - | chr5.4:5042147-5042166 | None:intergenic | 25.0% |
| ! | AATGAATAAAGTAATCACCT+TGG | - | chr5.4:5040958-5040977 | None:intergenic | 25.0% |
| ! | ATCTAGAAAACTATGTTTGT+GGG | - | chr5.4:5042146-5042165 | None:intergenic | 25.0% |
| ! | CATGATTTACCAATCAATTT+GGG | + | chr5.4:5040879-5040898 | MS.gene20125:CDS | 25.0% |
| ! | TATTCTTCAGAATACATCTA+GGG | + | chr5.4:5042922-5042941 | MS.gene20125:CDS | 25.0% |
| ! | TCATGATTTACCAATCAATT+TGG | + | chr5.4:5040878-5040897 | MS.gene20125:CDS | 25.0% |
| ! | TTATTCTTCAGAATACATCT+AGG | + | chr5.4:5042921-5042940 | MS.gene20125:CDS | 25.0% |
| !! | AAATGTATGTGTGCTTATTT+TGG | + | chr5.4:5041097-5041116 | MS.gene20125:intron | 25.0% |
| !! | CAAACATAGTTTTCTAGATT+TGG | + | chr5.4:5042147-5042166 | MS.gene20125:intron | 25.0% |
| !! | GAATTGATGATAGAAGATAT+TGG | + | chr5.4:5041718-5041737 | MS.gene20125:CDS | 25.0% |
| !! | GAGTTTAAAATCAATTCTAG+AGG | + | chr5.4:5041203-5041222 | MS.gene20125:intron | 25.0% |
| !! | TGGTAAATCATGAAAGATTT+TGG | - | chr5.4:5040871-5040890 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTGTGAAACTGTT+TGG | + | chr5.4:5041372-5041391 | MS.gene20125:intron | 25.0% |
| !!! | CGAGGTTTTTTTTTCAATTT+AGG | - | chr5.4:5042343-5042362 | None:intergenic | 25.0% |
| !!! | GATTTTCTGCATCTTTTTTA+TGG | + | chr5.4:5042419-5042438 | MS.gene20125:intron | 25.0% |
| !!! | GGACTGTCTTAATTTTTTTT+TGG | + | chr5.4:5041864-5041883 | MS.gene20125:intron | 25.0% |
| !!! | TAAGTTTTGTGAAACTGTTT+GGG | + | chr5.4:5041373-5041392 | MS.gene20125:intron | 25.0% |
| !!! | TGATTAGTTTAATGATGAGA+GGG | + | chr5.4:5041921-5041940 | MS.gene20125:intron | 25.0% |
| !!! | TTGATTAGTTTAATGATGAG+AGG | + | chr5.4:5041920-5041939 | MS.gene20125:intron | 25.0% |
| ATATCATCACTGAAGAATCT+AGG | + | chr5.4:5041745-5041764 | MS.gene20125:CDS | 30.0% | |
| ATCATCAACTGCGAAAATTA+AGG | - | chr5.4:5042719-5042738 | None:intergenic | 30.0% | |
| ATCCATTTCGCGAAAAATTT+AGG | - | chr5.4:5041012-5041031 | None:intergenic | 30.0% | |
| CGACTTAATACTATTGATGA+TGG | + | chr5.4:5040930-5040949 | MS.gene20125:CDS | 30.0% | |
| GACTAACACATGTTGATATT+TGG | - | chr5.4:5042227-5042246 | None:intergenic | 30.0% | |
| GTGAAAATTGGTAAAGTGAT+AGG | + | chr5.4:5042499-5042518 | MS.gene20125:intron | 30.0% | |
| TAATTCACCTAAAGTTGAAC+CGG | - | chr5.4:5040700-5040719 | None:intergenic | 30.0% | |
| TCCATTTCGCGAAAAATTTA+GGG | - | chr5.4:5041011-5041030 | None:intergenic | 30.0% | |
| TCTAGAAAACTATGTTTGTG+GGG | - | chr5.4:5042145-5042164 | None:intergenic | 30.0% | |
| TGGAATCATACATACACTTA+AGG | + | chr5.4:5041312-5041331 | MS.gene20125:intron | 30.0% | |
| ! | AGTCATAGAGAATTTGACTT+TGG | - | chr5.4:5043141-5043160 | None:intergenic | 30.0% |
| ! | TCTCTTTTACCCAAATTGAT+TGG | - | chr5.4:5040891-5040910 | None:intergenic | 30.0% |
| ! | TGTATGTATGATTCCACTTT+TGG | - | chr5.4:5041308-5041327 | None:intergenic | 30.0% |
| !! | GATTAGTTTAATGATGAGAG+GGG | + | chr5.4:5041922-5041941 | MS.gene20125:intron | 30.0% |
| !!! | AATCTATTTTAGTGGTGCTT+TGG | + | chr5.4:5042786-5042805 | MS.gene20125:intron | 30.0% |
| !!! | ATTTTGGTTTAGCGTATGTT+TGG | + | chr5.4:5041113-5041132 | MS.gene20125:intron | 30.0% |
| AACAGAATTGATCACAATGC+AGG | - | chr5.4:5041812-5041831 | None:intergenic | 35.0% | |
| AACATGTGTTAGTCCAAGTA+TGG | + | chr5.4:5042233-5042252 | MS.gene20125:intron | 35.0% | |
| AACCTGTAACCACATGTTTA+AGG | - | chr5.4:5042269-5042288 | None:intergenic | 35.0% | |
| ACATGTGTTAGTCCAAGTAT+GGG | + | chr5.4:5042234-5042253 | MS.gene20125:intron | 35.0% | |
| ACCTGTAACCACATGTTTAA+GGG | - | chr5.4:5042268-5042287 | None:intergenic | 35.0% | |
| AGCAAGCATATTTACCAATG+TGG | - | chr5.4:5042693-5042712 | None:intergenic | 35.0% | |
| AGTTCCTTTCAGAAAACACT+GGG | - | chr5.4:5043060-5043079 | None:intergenic | 35.0% | |
| ATCATACATACACTTAAGGC+TGG | + | chr5.4:5041316-5041335 | MS.gene20125:intron | 35.0% | |
| CTTATCTCAGCTTATAACAC+AGG | - | chr5.4:5041558-5041577 | None:intergenic | 35.0% | |
| GACTGGAATACATTCAAGTA+AGG | + | chr5.4:5042087-5042106 | MS.gene20125:intron | 35.0% | |
| GATAGGACATCGTTTGAAAA+TGG | + | chr5.4:5042516-5042535 | MS.gene20125:intron | 35.0% | |
| TTGGCTATATCAGCTAACAA+GGG | + | chr5.4:5041681-5041700 | MS.gene20125:CDS | 35.0% | |
| ! | AATTGGACTTTTTACCATGC+AGG | + | chr5.4:5043083-5043102 | MS.gene20125:CDS | 35.0% |
| ! | ACCCTAAATTTTTCGCGAAA+TGG | + | chr5.4:5041007-5041026 | MS.gene20125:intron | 35.0% |
| ! | AGGAGAAGATGGTAATTTGT+CGG | - | chr5.4:5040846-5040865 | None:intergenic | 35.0% |
| ! | GGAGCCAAAATTGATTCTAA+AGG | - | chr5.4:5041284-5041303 | None:intergenic | 35.0% |
| ! | TGCTCTTTTTGAATTCGCTT+GGG | - | chr5.4:5043220-5043239 | None:intergenic | 35.0% |
| ! | TTGCTCTTTTTGAATTCGCT+TGG | - | chr5.4:5043221-5043240 | None:intergenic | 35.0% |
| ! | TTGTTTGAGTTCAACCACAT+TGG | + | chr5.4:5042676-5042695 | MS.gene20125:intron | 35.0% |
| ! | TTTGTTGTGTGCAGAAAGTT+TGG | + | chr5.4:5041631-5041650 | MS.gene20125:intron | 35.0% |
| !! | AAGGTAATGGAGAGAACTAA+GGG | + | chr5.4:5041945-5041964 | MS.gene20125:intron | 35.0% |
| !! | AATCATGAAAGATTTTGGCG+AGG | - | chr5.4:5040866-5040885 | None:intergenic | 35.0% |
| !! | ATGTATGATTCCACTTTTGG+AGG | - | chr5.4:5041305-5041324 | None:intergenic | 35.0% |
| !! | CACTTGATGATGGTGAAAAT+TGG | + | chr5.4:5042487-5042506 | MS.gene20125:intron | 35.0% |
| !! | TTCTTCTGCTGATTTCGTTT+GGG | + | chr5.4:5040809-5040828 | MS.gene20125:CDS | 35.0% |
| AACAAGGGACTATCAGTACT+TGG | + | chr5.4:5041696-5041715 | MS.gene20125:CDS | 40.0% | |
| AACCACATGTTTAAGGGACA+CGG | - | chr5.4:5042262-5042281 | None:intergenic | 40.0% | |
| ACAGGTTCAATTCATACCCA+GGG | + | chr5.4:5042282-5042301 | MS.gene20125:intron | 40.0% | |
| AGTTGCGTTGCTTCAATCAT+CGG | + | chr5.4:5040726-5040745 | MS.gene20125:CDS | 40.0% | |
| AGTTTAATGATGAGAGGGGA+AGG | + | chr5.4:5041926-5041945 | MS.gene20125:intron | 40.0% | |
| AGTTTGGATTGATAGAGCCA+CGG | + | chr5.4:5041647-5041666 | MS.gene20125:CDS | 40.0% | |
| ATGTGTTAGTCCAAGTATGG+GGG | + | chr5.4:5042236-5042255 | MS.gene20125:intron | 40.0% | |
| ATTGAAGCAACGCAACTTTC+AGG | - | chr5.4:5040723-5040742 | None:intergenic | 40.0% | |
| ATTGATTGCACGCACACTAA+AGG | + | chr5.4:5043164-5043183 | MS.gene20125:CDS | 40.0% | |
| CAGTTCCTTTCAGAAAACAC+TGG | - | chr5.4:5043061-5043080 | None:intergenic | 40.0% | |
| CATGTGTTAGTCCAAGTATG+GGG | + | chr5.4:5042235-5042254 | MS.gene20125:intron | 40.0% | |
| CTTGGCTATATCAGCTAACA+AGG | + | chr5.4:5041680-5041699 | MS.gene20125:CDS | 40.0% | |
| CTTTGTCGGTACTATTGTGA+AGG | + | chr5.4:5042639-5042658 | MS.gene20125:intron | 40.0% | |
| GAAGAATAAGCTGTATGTCC+CGG | - | chr5.4:5042910-5042929 | None:intergenic | 40.0% | |
| GATAAGCTGTTTGTCCAAAC+AGG | + | chr5.4:5041572-5041591 | MS.gene20125:intron | 40.0% | |
| GCAACACTGAACATGTTCAT+GGG | + | chr5.4:5042976-5042995 | MS.gene20125:CDS | 40.0% | |
| GTTTGTCCAAACAGGCTTAT+TGG | + | chr5.4:5041580-5041599 | MS.gene20125:intron | 40.0% | |
| TAAAGTTGAACCGGTTGAAC+CGG | - | chr5.4:5040691-5040710 | None:intergenic | 40.0% | |
| TAATGGAGAGAACTAAGGGA+GGG | + | chr5.4:5041949-5041968 | MS.gene20125:intron | 40.0% | |
| TACAGGTTCAATTCATACCC+AGG | + | chr5.4:5042281-5042300 | MS.gene20125:intron | 40.0% | |
| TCATTTCGATCCAACCAAAC+CGG | + | chr5.4:5040669-5040688 | MS.gene20125:CDS | 40.0% | |
| TCCAACTTTGGACTTCAGAT+GGG | + | chr5.4:5043021-5043040 | MS.gene20125:CDS | 40.0% | |
| TCCCTTAAACATGTGGTTAC+AGG | + | chr5.4:5042264-5042283 | MS.gene20125:intron | 40.0% | |
| TGATGAATTCCCATCCTCAA+CGG | - | chr5.4:5043117-5043136 | None:intergenic | 40.0% | |
| TGCAACACTGAACATGTTCA+TGG | + | chr5.4:5042975-5042994 | MS.gene20125:CDS | 40.0% | |
| TTCCAACTTTGGACTTCAGA+TGG | + | chr5.4:5043020-5043039 | MS.gene20125:CDS | 40.0% | |
| ! | AAACAGGCTTATTGGCTGAT+GGG | + | chr5.4:5041588-5041607 | MS.gene20125:intron | 40.0% |
| ! | ACATACACTTAAGGCTGGTT+CGG | + | chr5.4:5041321-5041340 | MS.gene20125:intron | 40.0% |
| ! | ATTCTTCCATCGACTAGTCA+AGG | - | chr5.4:5042317-5042336 | None:intergenic | 40.0% |
| ! | TGCTTCAATCATCGGTTACA+TGG | + | chr5.4:5040734-5040753 | MS.gene20125:CDS | 40.0% |
| ! | TTCTGAAAGGAACTGGCAAT+TGG | + | chr5.4:5043066-5043085 | MS.gene20125:CDS | 40.0% |
| ! | TTCTTCCATCGACTAGTCAA+GGG | - | chr5.4:5042316-5042335 | None:intergenic | 40.0% |
| !! | CAGTGTTTTCTGAAAGGAAC+TGG | + | chr5.4:5043059-5043078 | MS.gene20125:CDS | 40.0% |
| !! | CTTCTTCTGCTGATTTCGTT+TGG | + | chr5.4:5040808-5040827 | MS.gene20125:CDS | 40.0% |
| !! | GAAGGTAATGGAGAGAACTA+AGG | + | chr5.4:5041944-5041963 | MS.gene20125:intron | 40.0% |
| !! | TACTATTGATGATGGCACCA+AGG | + | chr5.4:5040938-5040957 | MS.gene20125:CDS | 40.0% |
| !!! | AATTTTGGCTCCTCCAAAAG+TGG | + | chr5.4:5041292-5041311 | MS.gene20125:intron | 40.0% |
| AATGGAGAGAACTAAGGGAG+GGG | + | chr5.4:5041950-5041969 | MS.gene20125:intron | 45.0% | |
| ACACTGAACATGTTCATGGG+TGG | + | chr5.4:5042979-5042998 | MS.gene20125:CDS | 45.0% | |
| AGTCAAGGGATCAATTACCC+TGG | - | chr5.4:5042302-5042321 | None:intergenic | 45.0% | |
| ATCATCAAGTGCGCGAGAAT+AGG | - | chr5.4:5042478-5042497 | None:intergenic | 45.0% | |
| ATGATGAGAGGGGAAGGTAA+TGG | + | chr5.4:5041932-5041951 | MS.gene20125:intron | 45.0% | |
| ATTACGCTTCTCTGCTACTG+AGG | + | chr5.4:5042581-5042600 | MS.gene20125:intron | 45.0% | |
| CACTAAAGGTGGTCTGTGTT+TGG | + | chr5.4:5043178-5043197 | MS.gene20125:CDS | 45.0% | |
| CACTGAACATGTTCATGGGT+GGG | + | chr5.4:5042980-5042999 | MS.gene20125:CDS | 45.0% | |
| CATCAGCCAATAAGCCTGTT+TGG | - | chr5.4:5041589-5041608 | None:intergenic | 45.0% | |
| GTCAAGGGATCAATTACCCT+GGG | - | chr5.4:5042301-5042320 | None:intergenic | 45.0% | |
| GTGATTTCACCGTTGAGGAT+GGG | + | chr5.4:5043105-5043124 | MS.gene20125:CDS | 45.0% | |
| GTTTGGATTGATAGAGCCAC+GGG | + | chr5.4:5041648-5041667 | MS.gene20125:CDS | 45.0% | |
| TATTCTCGCGCACTTGATGA+TGG | + | chr5.4:5042477-5042496 | MS.gene20125:intron | 45.0% | |
| TCCTTTCAGAAAACACTGGG+AGG | - | chr5.4:5043057-5043076 | None:intergenic | 45.0% | |
| TTGCATACCTTCAGCATACC+TGG | + | chr5.4:5042844-5042863 | MS.gene20125:CDS | 45.0% | |
| ! | CAAACAGGCTTATTGGCTGA+TGG | + | chr5.4:5041587-5041606 | MS.gene20125:intron | 45.0% |
| ! | GGTTCAACCGGTTCAACTTT+AGG | + | chr5.4:5040690-5040709 | MS.gene20125:CDS | 45.0% |
| ! | GTAATGGAGAGAACTAAGGG+AGG | + | chr5.4:5041948-5041967 | MS.gene20125:intron | 45.0% |
| ! | GTTGCAAGTTGACAGATCTG+AGG | - | chr5.4:5040765-5040784 | None:intergenic | 45.0% |
| ! | TTGATCCCTTGACTAGTCGA+TGG | + | chr5.4:5042308-5042327 | MS.gene20125:intron | 45.0% |
| !! | AGATTTTGGCGAGGAGAAGA+TGG | - | chr5.4:5040857-5040876 | None:intergenic | 45.0% |
| !! | GGCTGATGGGTTTGGATATA+TGG | + | chr5.4:5041601-5041620 | MS.gene20125:intron | 45.0% |
| AATAAGCTGTATGTCCCGGC+TGG | - | chr5.4:5042906-5042925 | None:intergenic | 50.0% | |
| ACGACGTCCAAACCTCTTGT+AGG | - | chr5.4:5042952-5042971 | None:intergenic | 50.0% | |
| AGCCTGTGCGATTCCAACTT+TGG | + | chr5.4:5043009-5043028 | MS.gene20125:CDS | 50.0% | |
| ATGGAGAGAACTAAGGGAGG+GGG | + | chr5.4:5041951-5041970 | MS.gene20125:intron | 50.0% | |
| CAAACCACCAGGTATGCTGA+AGG | - | chr5.4:5042854-5042873 | None:intergenic | 50.0% | |
| CAACGGTGAAATCACCTGCA+TGG | - | chr5.4:5043100-5043119 | None:intergenic | 50.0% | |
| CATACCTTCAGCATACCTGG+TGG | + | chr5.4:5042847-5042866 | MS.gene20125:CDS | 50.0% | |
| GATTGCACGCACACTAAAGG+TGG | + | chr5.4:5043167-5043186 | MS.gene20125:CDS | 50.0% | |
| GCATACCTGGTGGTTTGAAG+TGG | + | chr5.4:5042857-5042876 | MS.gene20125:CDS | 50.0% | |
| GGTGATTTCACCGTTGAGGA+TGG | + | chr5.4:5043104-5043123 | MS.gene20125:CDS | 50.0% | |
| GTCCAAAGTTGGAATCGCAC+AGG | - | chr5.4:5043014-5043033 | None:intergenic | 50.0% | |
| TGCAGGTGATTTCACCGTTG+AGG | + | chr5.4:5043100-5043119 | MS.gene20125:CDS | 50.0% | |
| TGTATGTCCCGGCTGGAAAT+GGG | - | chr5.4:5042899-5042918 | None:intergenic | 50.0% | |
| TTGAACCGGTTGAACCGGTT+TGG | - | chr5.4:5040686-5040705 | None:intergenic | 50.0% | |
| TTGACTTCCCATTTCCAGCC+GGG | + | chr5.4:5042889-5042908 | MS.gene20125:CDS | 50.0% | |
| ! | ACCTGGTGGTTTGAAGTGGA+CGG | + | chr5.4:5042861-5042880 | MS.gene20125:CDS | 50.0% |
| ! | ATCTAGGGCAAGCCTACAAG+AGG | + | chr5.4:5042937-5042956 | MS.gene20125:CDS | 50.0% |
| ! | GCAAGTTGACAGATCTGAGG+AGG | - | chr5.4:5040762-5040781 | None:intergenic | 50.0% |
| ! | GCCCATCTGAAGTCCAAAGT+TGG | - | chr5.4:5043025-5043044 | None:intergenic | 50.0% |
| ! | GCCTCCCAGTGTTTTCTGAA+AGG | + | chr5.4:5043053-5043072 | MS.gene20125:CDS | 50.0% |
| ! | GTTGACTTCCCATTTCCAGC+CGG | + | chr5.4:5042888-5042907 | MS.gene20125:CDS | 50.0% |
| ! | TCCAACCAAACCGGTTCAAC+CGG | + | chr5.4:5040678-5040697 | MS.gene20125:CDS | 50.0% |
| !! | CACTTAAGGCTGGTTCGGAT+TGG | + | chr5.4:5041326-5041345 | MS.gene20125:intron | 50.0% |
| !! | GGCTTATTGGCTGATGGGTT+TGG | + | chr5.4:5041593-5041612 | MS.gene20125:intron | 50.0% |
| AGAGAACTAAGGGAGGGGGA+AGG | + | chr5.4:5041955-5041974 | MS.gene20125:intron | 55.0% | |
| CTGTATGTCCCGGCTGGAAA+TGG | - | chr5.4:5042900-5042919 | None:intergenic | 55.0% | |
| GCTTCTCTGCTACTGAGGCA+CGG | + | chr5.4:5042586-5042605 | MS.gene20125:intron | 55.0% | |
| GGCCGTGTCCCTTAAACATG+TGG | + | chr5.4:5042257-5042276 | MS.gene20125:intron | 55.0% | |
| GGGCAAGCCTACAAGAGGTT+TGG | + | chr5.4:5042942-5042961 | MS.gene20125:CDS | 55.0% | |
| ! | CCTGGTGGTTTGAAGTGGAC+GGG | + | chr5.4:5042862-5042881 | MS.gene20125:CDS | 55.0% |
| ! | CTGGTGGTTTGAAGTGGACG+GGG | + | chr5.4:5042863-5042882 | MS.gene20125:CDS | 55.0% |
| !! | ACCGGTTGAACCGGTTTGGT+TGG | - | chr5.4:5040682-5040701 | None:intergenic | 55.0% |
| AAGGGAGGGGGAAGGAATCG+AGG | + | chr5.4:5041963-5041982 | MS.gene20125:intron | 60.0% | |
| AGCCAAGCAAAGCTTGCCCG+TGG | - | chr5.4:5041667-5041686 | None:intergenic | 60.0% | |
| AGCCACGGGCAAGCTTTGCT+TGG | + | chr5.4:5041662-5041681 | MS.gene20125:CDS | 60.0% | |
| AGGGAGGGGGAAGGAATCGA+GGG | + | chr5.4:5041964-5041983 | MS.gene20125:intron | 60.0% | |
| AGGGGGAAGGAATCGAGGGA+TGG | + | chr5.4:5041968-5041987 | MS.gene20125:intron | 60.0% | |
| CCCGTCCACTTCAAACCACC+AGG | - | chr5.4:5042865-5042884 | None:intergenic | 60.0% | |
| AGGGACACGGCCCCCATACT+TGG | - | chr5.4:5042249-5042268 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 5040651 | 5043262 | 5040651 | ID=MS.gene20125 |
| chr5.4 | mRNA | 5040651 | 5043262 | 5040651 | ID=MS.gene20125.t1;Parent=MS.gene20125 |
| chr5.4 | exon | 5040651 | 5040959 | 5040651 | ID=MS.gene20125.t1.exon1;Parent=MS.gene20125.t1 |
| chr5.4 | CDS | 5040651 | 5040959 | 5040651 | ID=cds.MS.gene20125.t1;Parent=MS.gene20125.t1 |
| chr5.4 | exon | 5041645 | 5041766 | 5041645 | ID=MS.gene20125.t1.exon2;Parent=MS.gene20125.t1 |
| chr5.4 | CDS | 5041645 | 5041766 | 5041645 | ID=cds.MS.gene20125.t1;Parent=MS.gene20125.t1 |
| chr5.4 | exon | 5042833 | 5043262 | 5042833 | ID=MS.gene20125.t1.exon3;Parent=MS.gene20125.t1 |
| chr5.4 | CDS | 5042833 | 5043262 | 5042833 | ID=cds.MS.gene20125.t1;Parent=MS.gene20125.t1 |
| Gene Sequence |
| Protein sequence |
