Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006911.t1 | XP_003607895.1 | 99.1 | 318 | 3 | 0 | 1 | 318 | 1 | 318 | 2.10E-173 | 618.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006911.t1 | Q39211 | 81.2 | 319 | 59 | 1 | 1 | 318 | 1 | 319 | 3.9e-144 | 512.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006911.t1 | Q2MGQ5 | 99.1 | 318 | 3 | 0 | 1 | 318 | 1 | 318 | 1.5e-173 | 618.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006911 | MS.gene90747 | PPI |
| MS.gene022098 | MS.gene006911 | PPI |
| MS.gene84578 | MS.gene006911 | PPI |
| MS.gene063673 | MS.gene006911 | PPI |
| MS.gene24205 | MS.gene006911 | PPI |
| MS.gene27287 | MS.gene006911 | PPI |
| MS.gene67503 | MS.gene006911 | PPI |
| MS.gene94781 | MS.gene006911 | PPI |
| MS.gene055112 | MS.gene006911 | PPI |
| MS.gene97308 | MS.gene006911 | PPI |
| MS.gene006911 | MS.gene95440 | PPI |
| MS.gene46015 | MS.gene006911 | PPI |
| MS.gene006911 | MS.gene56067 | PPI |
| MS.gene43180 | MS.gene006911 | PPI |
| MS.gene56414 | MS.gene006911 | PPI |
| MS.gene006911 | MS.gene27025 | PPI |
| MS.gene006911 | MS.gene64820 | PPI |
| MS.gene006911 | MS.gene67685 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006911.t1 | MTR_4g084150 | 99.057 | 318 | 3 | 0 | 1 | 318 | 1 | 318 | 0.0 | 648 |
| MS.gene006911.t1 | MTR_3g060690 | 31.861 | 317 | 175 | 8 | 11 | 295 | 87 | 394 | 3.79e-37 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006911.t1 | AT2G15430 | 81.562 | 320 | 56 | 2 | 1 | 318 | 1 | 319 | 0.0 | 536 |
| MS.gene006911.t1 | AT2G15400 | 75.235 | 319 | 78 | 1 | 1 | 318 | 1 | 319 | 2.69e-177 | 493 |
| MS.gene006911.t1 | AT2G15430 | 77.350 | 234 | 50 | 2 | 1 | 232 | 1 | 233 | 2.54e-132 | 376 |
| MS.gene006911.t1 | AT2G15430 | 76.763 | 241 | 53 | 2 | 1 | 239 | 1 | 240 | 3.29e-132 | 376 |
| MS.gene006911.t1 | AT2G15400 | 72.174 | 230 | 63 | 1 | 1 | 229 | 1 | 230 | 1.01e-117 | 339 |
| MS.gene006911.t1 | AT1G60620 | 30.868 | 311 | 177 | 7 | 11 | 295 | 17 | 315 | 1.33e-33 | 126 |
| MS.gene006911.t1 | AT1G60620 | 30.868 | 311 | 177 | 7 | 11 | 295 | 82 | 380 | 4.89e-33 | 125 |
| MS.gene006911.t1 | AT1G60850 | 30.225 | 311 | 178 | 7 | 11 | 295 | 75 | 372 | 8.24e-33 | 125 |
| MS.gene006911.t1 | AT1G60850 | 30.225 | 311 | 178 | 7 | 11 | 295 | 75 | 372 | 8.24e-33 | 125 |
| MS.gene006911.t1 | AT1G60850 | 30.225 | 311 | 178 | 7 | 11 | 295 | 75 | 372 | 8.24e-33 | 125 |
| MS.gene006911.t1 | AT1G60850 | 34.906 | 212 | 106 | 5 | 11 | 196 | 75 | 280 | 8.55e-26 | 104 |
Find 74 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACATCAATGAAGATTTAA+TGG | 0.210874 | 4.3:+27730242 | MS.gene006911:CDS |
| GTTCAGTTGAGTTTCATCTT+AGG | 0.271624 | 4.3:+27728992 | MS.gene006911:CDS |
| TTTGACACTTGAGGAGAAAA+AGG | 0.302144 | 4.3:+27730269 | MS.gene006911:CDS |
| GTTACTCCGGTGGATGTTCC+TGG | 0.334842 | 4.3:+27729081 | MS.gene006911:CDS |
| CCGGAGCGCGTTGGCGACGC+TGG | 0.342082 | 4.3:-27728779 | None:intergenic |
| CTTCTGCTTGAGAATTTCAA+TGG | 0.357410 | 4.3:-27731828 | None:intergenic |
| CCAGCGTCGCCAACGCGCTC+CGG | 0.359601 | 4.3:+27728779 | MS.gene006911:CDS |
| GTTGAAGCTGATGATCAATT+TGG | 0.361165 | 4.3:+27731881 | MS.gene006911:CDS |
| TTCAGTTGAGTTTCATCTTA+GGG | 0.374933 | 4.3:+27728993 | MS.gene006911:CDS |
| TGTAGTCGTCTTTGAGTTCA+CGG | 0.407857 | 4.3:-27728729 | None:intergenic |
| CGCGTTGGCGACGCTGGCGT+CGG | 0.437447 | 4.3:-27728773 | None:intergenic |
| GCAGAAGCAATGGGAAAGCC+TGG | 0.442666 | 4.3:+27731716 | MS.gene006911:CDS |
| TCATCATAACTATATGCCTC+AGG | 0.443043 | 4.3:-27731677 | None:intergenic |
| AGTTGCTGCTGGTGACCATT+TGG | 0.448661 | 4.3:-27730193 | None:intergenic |
| CAAGGTCGATGGCGATGGTT+GGG | 0.459459 | 4.3:-27728822 | None:intergenic |
| AGGCAAACCTGCTGTGTGAC+AGG | 0.471461 | 4.3:-27730333 | None:intergenic |
| GACGTTGGATGTTAGTAGTA+AGG | 0.475900 | 4.3:+27729035 | MS.gene006911:CDS |
| TGAAATTCTCAAGCAGAAGC+TGG | 0.482693 | 4.3:+27731832 | MS.gene006911:CDS |
| ACTGAGAGCGATTGCTAGGA+AGG | 0.484416 | 4.3:+27730152 | MS.gene006911:CDS |
| TGATGATCAATTTGGTGAGC+TGG | 0.488837 | 4.3:+27731889 | MS.gene006911:CDS |
| TTGAGATGCTTTGACTGCTC+CGG | 0.496041 | 4.3:-27731792 | None:intergenic |
| TTCAACAAGGTCGATGGCGA+TGG | 0.497244 | 4.3:-27728827 | None:intergenic |
| TCTTTCTCCTTAACAATGGA+AGG | 0.498182 | 4.3:+27728673 | None:intergenic |
| GATGGCGATGGTTGGGACTT+CGG | 0.498289 | 4.3:-27728815 | None:intergenic |
| ACAAGGTCGATGGCGATGGT+TGG | 0.501063 | 4.3:-27728823 | None:intergenic |
| TCTTCATTGATGTGAATGTC+TGG | 0.502428 | 4.3:-27730234 | None:intergenic |
| TCTTAGGGTTAAGTGTATAA+CGG | 0.507140 | 4.3:+27729008 | MS.gene006911:CDS |
| ACGTGAGAAGCGCATGGCCA+TGG | 0.507484 | 4.3:-27728929 | None:intergenic |
| TGAGACTGAGAGCGATTGCT+AGG | 0.516563 | 4.3:+27730148 | MS.gene006911:CDS |
| ATCAAGAAAGCAGAAGCAAT+GGG | 0.525337 | 4.3:+27731707 | MS.gene006911:CDS |
| TGTGAAGTTGAGGAGAGGTC+AGG | 0.526667 | 4.3:+27730122 | MS.gene006911:CDS |
| TATTGATCCTGTCACACAGC+AGG | 0.526854 | 4.3:+27730326 | MS.gene006911:CDS |
| AATGGAGTCTTTGACACTTG+AGG | 0.531173 | 4.3:+27730260 | MS.gene006911:CDS |
| GCAGTTATTTCTATAAGCCC+AGG | 0.541886 | 4.3:-27731734 | None:intergenic |
| TTCGATTTCAACAAGGTCGA+TGG | 0.544241 | 4.3:-27728833 | None:intergenic |
| GATGCTTCTGTTGAATCTGA+TGG | 0.545347 | 4.3:+27729108 | MS.gene006911:CDS |
| GGATTATCATTGTGAAGTTG+AGG | 0.552832 | 4.3:+27730112 | MS.gene006911:CDS |
| TCAATATCAAAGACACGAGT+AGG | 0.554647 | 4.3:-27730309 | None:intergenic |
| TCGGTAAGGATCATGCCAAA+TGG | 0.554925 | 4.3:+27730178 | MS.gene006911:CDS |
| TGAGAGCGATTGCTAGGAAG+GGG | 0.558513 | 4.3:+27730154 | MS.gene006911:CDS |
| CATCACGCGCCGGAGCGCGT+TGG | 0.561690 | 4.3:-27728788 | None:intergenic |
| ACTCACAAGCGAACGTGCCA+TGG | 0.569511 | 4.3:+27728912 | MS.gene006911:CDS |
| CACCGGAGTAACGGTATGAT+CGG | 0.570614 | 4.3:-27729070 | None:intergenic |
| CTGAGAGCGATTGCTAGGAA+GGG | 0.570973 | 4.3:+27730153 | MS.gene006911:CDS |
| CTTCTGTTGAATCTGATGGA+AGG | 0.575113 | 4.3:+27729112 | MS.gene006911:CDS |
| CGATCATACCGTTACTCCGG+TGG | 0.575290 | 4.3:+27729071 | MS.gene006911:CDS |
| GATCAAGAAAGCAGAAGCAA+TGG | 0.576120 | 4.3:+27731706 | MS.gene006911:CDS |
| TGCTAGGAAGGGGATCGGTA+AGG | 0.577965 | 4.3:+27730164 | MS.gene006911:CDS |
| CAGAAGCAATGGGAAAGCCT+GGG | 0.582279 | 4.3:+27731717 | MS.gene006911:CDS |
| ATGGCACGTTCGCTTGTGAG+TGG | 0.583334 | 4.3:-27728910 | None:intergenic |
| GAGTTCATCGCTCACAGACT+CGG | 0.584109 | 4.3:+27728880 | MS.gene006911:CDS |
| AGGAACATCCACCGGAGTAA+CGG | 0.584181 | 4.3:-27729079 | None:intergenic |
| GATGAACTCGTCGTTCAGAA+CGG | 0.596567 | 4.3:-27728866 | None:intergenic |
| CGTGACTGTGATGCTTGTGA+TGG | 0.599792 | 4.3:+27728949 | MS.gene006911:CDS |
| GATGATCAATTTGGTGAGCT+GGG | 0.599917 | 4.3:+27731890 | MS.gene006911:CDS |
| CATCATAACTATATGCCTCA+GGG | 0.615098 | 4.3:-27731676 | None:intergenic |
| TCAACAGAAGCATCACCACC+AGG | 0.615579 | 4.3:-27729099 | None:intergenic |
| TGTGATGCTTGTGATGGTGA+TGG | 0.622311 | 4.3:+27728955 | MS.gene006911:CDS |
| CTCCGATCATACCGTTACTC+CGG | 0.622448 | 4.3:+27729068 | MS.gene006911:CDS |
| TCACCACCAGGAACATCCAC+CGG | 0.625792 | 4.3:-27729087 | None:intergenic |
| GCGATTGCTAGGAAGGGGAT+CGG | 0.627906 | 4.3:+27730159 | MS.gene006911:CDS |
| ATCATTGTGAAGTTGAGGAG+AGG | 0.635073 | 4.3:+27730117 | MS.gene006911:CDS |
| CTTCGGAAATCATCACGCGC+CGG | 0.642651 | 4.3:-27728798 | None:intergenic |
| ATGAAAGTAACAGTTGCTGC+TGG | 0.644886 | 4.3:-27730204 | None:intergenic |
| GGCATATAGTTATGATGATG+AGG | 0.651134 | 4.3:+27731682 | MS.gene006911:CDS |
| ACAGTCACGTGAGAAGCGCA+TGG | 0.655640 | 4.3:-27728935 | None:intergenic |
| AGTTCACTTCGATTTCAACA+AGG | 0.663781 | 4.3:-27728840 | None:intergenic |
| AGCAGAAGCTGGATGCTGTG+AGG | 0.686847 | 4.3:+27731843 | MS.gene006911:CDS |
| GGTGGTGGTAGTTGACCCTG+AGG | 0.702152 | 4.3:+27731661 | MS.gene006911:intron |
| GTGTATAACGGATCAGACGT+TGG | 0.703684 | 4.3:+27729020 | MS.gene006911:CDS |
| GAGCTGGGTGCACATATGCG+AGG | 0.705973 | 4.3:+27731905 | MS.gene006911:CDS |
| CTGGGTGCACATATGCGAGG+AGG | 0.741311 | 4.3:+27731908 | MS.gene006911:CDS |
| TGTGAGGCTATCTGAAGACA+CGG | 0.745035 | 4.3:+27731859 | MS.gene006911:CDS |
| ACTCCGGTGGATGTTCCTGG+TGG | 0.749174 | 4.3:+27729084 | MS.gene006911:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAATATGATATTAATATC+TGG | + | chr4.3:27731226-27731245 | MS.gene006911:intron | 15.0% |
| !!! | AAGTAACAATGAATTTTTTA+AGG | - | chr4.3:27731591-27731610 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTAGATTTCAAC+TGG | + | chr4.3:27729145-27729164 | MS.gene006911:intron | 15.0% |
| !!! | TTTTTTTTTAGATTTCAACT+GGG | + | chr4.3:27729146-27729165 | MS.gene006911:intron | 15.0% |
| !! | AAATACCAAAAAATTAAGGT+TGG | + | chr4.3:27730928-27730947 | MS.gene006911:intron | 20.0% |
| !! | AGGAAAATACCAAAAAATTA+AGG | + | chr4.3:27730924-27730943 | MS.gene006911:intron | 20.0% |
| !! | GAATCTATAATTAGACATAA+TGG | - | chr4.3:27730867-27730886 | None:intergenic | 20.0% |
| !!! | ATTTTTTTGTATTGATTAGG+TGG | + | chr4.3:27731643-27731662 | MS.gene006911:intron | 20.0% |
| !!! | CTTTTGATTTTGTGTTTAAA+TGG | + | chr4.3:27730488-27730507 | MS.gene006911:intron | 20.0% |
| !!! | GTGATTTTTTTGTATTGATT+AGG | + | chr4.3:27731640-27731659 | MS.gene006911:intron | 20.0% |
| !!! | TATAAGCTATTTCTATAACA+AGG | + | chr4.3:27729304-27729323 | MS.gene006911:intron | 20.0% |
| !!! | TTTTTCCAACCTTAATTTTT+TGG | - | chr4.3:27730936-27730955 | None:intergenic | 20.0% |
| ! | AAATTAAGCTGTTTACCTAT+AGG | - | chr4.3:27729681-27729700 | None:intergenic | 25.0% |
| ! | AACCATCTAAATGAGATTAA+AGG | - | chr4.3:27729994-27730013 | None:intergenic | 25.0% |
| ! | AAGATCATATCAGAAAGTAA+AGG | - | chr4.3:27730746-27730765 | None:intergenic | 25.0% |
| ! | AATTAAGCTGTTTACCTATA+GGG | - | chr4.3:27729680-27729699 | None:intergenic | 25.0% |
| ! | CCTAAGAATCATTATCAAAT+TGG | - | chr4.3:27731189-27731208 | None:intergenic | 25.0% |
| ! | GTACAATAAATTACCTTAAG+TGG | - | chr4.3:27731616-27731635 | None:intergenic | 25.0% |
| ! | TAAGCTATGTCTATAACAAA+AGG | + | chr4.3:27729800-27729819 | MS.gene006911:intron | 25.0% |
| ! | TACCTTTAATCTCATTTAGA+TGG | + | chr4.3:27729989-27730008 | MS.gene006911:intron | 25.0% |
| ! | TCAAATAAACCAATACAAAC+AGG | + | chr4.3:27729463-27729482 | MS.gene006911:intron | 25.0% |
| ! | TCACATCAATGAAGATTTAA+TGG | + | chr4.3:27730242-27730261 | MS.gene006911:CDS | 25.0% |
| ! | TTGATCTTAGAACAAATGTT+GGG | + | chr4.3:27731133-27731152 | MS.gene006911:intron | 25.0% |
| ! | TTTATTACTATGAATCCACT+AGG | + | chr4.3:27731468-27731487 | MS.gene006911:intron | 25.0% |
| !! | AATGAGATTAAAGGTATGTT+TGG | - | chr4.3:27729985-27730004 | None:intergenic | 25.0% |
| !! | ATAAGAGTATGTAAAACACT+TGG | - | chr4.3:27731394-27731413 | None:intergenic | 25.0% |
| !! | ATTTAAAATCCTGCTTATGA+TGG | + | chr4.3:27731249-27731268 | MS.gene006911:intron | 25.0% |
| !! | TAATGATTCTTAGGCTTTAA+AGG | + | chr4.3:27731195-27731214 | MS.gene006911:intron | 25.0% |
| !! | TCGTACTTCAAATTCATTTT+AGG | + | chr4.3:27731435-27731454 | MS.gene006911:intron | 25.0% |
| !!! | ATGTTTTGAATAGTTCTTGT+GGG | + | chr4.3:27730713-27730732 | MS.gene006911:intron | 25.0% |
| !!! | CCAATTTGATAATGATTCTT+AGG | + | chr4.3:27731186-27731205 | MS.gene006911:intron | 25.0% |
| !!! | GTTTTAATGTTGGGTTTATT+CGG | + | chr4.3:27730046-27730065 | MS.gene006911:intron | 25.0% |
| !!! | TTGGTTTGATGTTTTCAAAT+GGG | + | chr4.3:27729500-27729519 | MS.gene006911:intron | 25.0% |
| !!! | TTTGGTTTGATGTTTTCAAA+TGG | + | chr4.3:27729499-27729518 | MS.gene006911:intron | 25.0% |
| !!! | TTTTAAGGAACAATACATCA+AGG | - | chr4.3:27731576-27731595 | None:intergenic | 25.0% |
| !!! | TTTTGTTTATGCTGAATGTA+GGG | + | chr4.3:27730089-27730108 | MS.gene006911:intron | 25.0% |
| !!! | TTTTTGTTTATGCTGAATGT+AGG | + | chr4.3:27730088-27730107 | MS.gene006911:intron | 25.0% |
| AAGGTTGGAAAAATAGAAAG+TGG | + | chr4.3:27730943-27730962 | MS.gene006911:intron | 30.0% | |
| AATAAGCTATGCGTATAACA+AGG | + | chr4.3:27729725-27729744 | MS.gene006911:intron | 30.0% | |
| AGAACAAACAGTTATGTTGT+AGG | + | chr4.3:27729581-27729600 | MS.gene006911:intron | 30.0% | |
| AGGTTGGAAAAATAGAAAGT+GGG | + | chr4.3:27730944-27730963 | MS.gene006911:intron | 30.0% | |
| AGTTATGTTGTAGGATCTTT+GGG | + | chr4.3:27729590-27729609 | MS.gene006911:intron | 30.0% | |
| ATCAAACCAAAATGAGAACA+AGG | - | chr4.3:27729490-27729509 | None:intergenic | 30.0% | |
| ATTCTTGATCAATGCTAAGT+CGG | + | chr4.3:27731509-27731528 | MS.gene006911:intron | 30.0% | |
| CACAAAATCAAAAGACAGTA+AGG | - | chr4.3:27730482-27730501 | None:intergenic | 30.0% | |
| CTTGATCTTAGAACAAATGT+TGG | + | chr4.3:27731132-27731151 | MS.gene006911:intron | 30.0% | |
| TATACGCATAGCTTATTCAT+AGG | - | chr4.3:27729722-27729741 | None:intergenic | 30.0% | |
| TCAAACCAAAATGAGAACAA+GGG | - | chr4.3:27729489-27729508 | None:intergenic | 30.0% | |
| TCTTAGGGTTAAGTGTATAA+CGG | + | chr4.3:27729008-27729027 | MS.gene006911:CDS | 30.0% | |
| TGATCTTAGAACAAATGTTG+GGG | + | chr4.3:27731134-27731153 | MS.gene006911:intron | 30.0% | |
| TTACAAGCAATCACAAATAG+AGG | + | chr4.3:27730794-27730813 | MS.gene006911:intron | 30.0% | |
| TTACATACTCTTATCTTGTG+TGG | + | chr4.3:27731400-27731419 | MS.gene006911:intron | 30.0% | |
| TTCAGTTGAGTTTCATCTTA+GGG | + | chr4.3:27728993-27729012 | MS.gene006911:CDS | 30.0% | |
| TTGAATGTGATTGTGTGTAT+GGG | + | chr4.3:27729198-27729217 | MS.gene006911:intron | 30.0% | |
| TTTGAATGTGATTGTGTGTA+TGG | + | chr4.3:27729197-27729216 | MS.gene006911:intron | 30.0% | |
| TTTGTTTATGCTGAATGTAG+GGG | + | chr4.3:27730090-27730109 | MS.gene006911:intron | 30.0% | |
| ! | ATCCTGATGTAGTGTTTTAT+GGG | - | chr4.3:27730834-27730853 | None:intergenic | 30.0% |
| ! | ATTTTCACAGTTGAATCTAC+CGG | + | chr4.3:27731773-27731792 | MS.gene006911:CDS | 30.0% |
| ! | CATTATCAAATTGGTAGCTT+GGG | - | chr4.3:27731180-27731199 | None:intergenic | 30.0% |
| ! | GATTAAAGGTATGTTTGGAT+TGG | - | chr4.3:27729980-27729999 | None:intergenic | 30.0% |
| ! | TATCCTGATGTAGTGTTTTA+TGG | - | chr4.3:27730835-27730854 | None:intergenic | 30.0% |
| ! | TCATTATCAAATTGGTAGCT+TGG | - | chr4.3:27731181-27731200 | None:intergenic | 30.0% |
| ! | TTTTCAAATGTGACATGCAT+GGG | + | chr4.3:27729532-27729551 | MS.gene006911:intron | 30.0% |
| !! | GATGTTTTGAATAGTTCTTG+TGG | + | chr4.3:27730712-27730731 | MS.gene006911:intron | 30.0% |
| !!! | AGAACGAACAGTTTTGTTTT+AGG | + | chr4.3:27729247-27729266 | MS.gene006911:intron | 30.0% |
| !!! | TTTTTGTATTGATTAGGTGG+TGG | + | chr4.3:27731646-27731665 | MS.gene006911:intron | 30.0% |
| AAAACACTACATCAGGATAG+TGG | + | chr4.3:27730836-27730855 | MS.gene006911:intron | 35.0% | |
| AAACACTACATCAGGATAGT+GGG | + | chr4.3:27730837-27730856 | MS.gene006911:intron | 35.0% | |
| AACTAGGATGTTTACCCAAA+GGG | - | chr4.3:27729751-27729770 | None:intergenic | 35.0% | |
| AAGACAGTAAGGCAAGTATT+TGG | - | chr4.3:27730471-27730490 | None:intergenic | 35.0% | |
| AAGGAACAATACATCAAGGA+AGG | - | chr4.3:27731572-27731591 | None:intergenic | 35.0% | |
| AGAGTGGAAAATGCAATTAG+AGG | + | chr4.3:27730646-27730665 | MS.gene006911:intron | 35.0% | |
| AGATCAAGCAATTACTAACC+AGG | - | chr4.3:27731120-27731139 | None:intergenic | 35.0% | |
| AGTTCACTTCGATTTCAACA+AGG | - | chr4.3:27728843-27728862 | None:intergenic | 35.0% | |
| ATATGTGTGTGTACGAACTA+AGG | + | chr4.3:27730904-27730923 | MS.gene006911:intron | 35.0% | |
| ATCAAGAAAGCAGAAGCAAT+GGG | + | chr4.3:27731707-27731726 | MS.gene006911:CDS | 35.0% | |
| CAGTTATGTTGTAGGATCTT+TGG | + | chr4.3:27729589-27729608 | MS.gene006911:intron | 35.0% | |
| CATCATAACTATATGCCTCA+GGG | - | chr4.3:27731679-27731698 | None:intergenic | 35.0% | |
| CTATTCTTATTCGCTTCCTA+AGG | + | chr4.3:27730354-27730373 | MS.gene006911:intron | 35.0% | |
| CTGATACTTAGTTATGCACT+TGG | + | chr4.3:27730432-27730451 | MS.gene006911:intron | 35.0% | |
| CTTAGGAAGCGAATAAGAAT+AGG | - | chr4.3:27730356-27730375 | None:intergenic | 35.0% | |
| CTTCACACTTTCATTCTAGA+AGG | + | chr4.3:27730768-27730787 | MS.gene006911:intron | 35.0% | |
| CTTCTGCTTGAGAATTTCAA+TGG | - | chr4.3:27731831-27731850 | None:intergenic | 35.0% | |
| GAAAACAGCTTACAGCTTAA+TGG | - | chr4.3:27729847-27729866 | None:intergenic | 35.0% | |
| GGATTATCATTGTGAAGTTG+AGG | + | chr4.3:27730112-27730131 | MS.gene006911:CDS | 35.0% | |
| GGTTGGAAAAATAGAAAGTG+GGG | + | chr4.3:27730945-27730964 | MS.gene006911:intron | 35.0% | |
| GTCTGTAAAAAAGACCCTAT+AGG | + | chr4.3:27729663-27729682 | MS.gene006911:intron | 35.0% | |
| GTTCAGTTGAGTTTCATCTT+AGG | + | chr4.3:27728992-27729011 | MS.gene006911:CDS | 35.0% | |
| GTTGAAGCTGATGATCAATT+TGG | + | chr4.3:27731881-27731900 | MS.gene006911:CDS | 35.0% | |
| GTTGGAAAAATAGAAAGTGG+GGG | + | chr4.3:27730946-27730965 | MS.gene006911:intron | 35.0% | |
| TAACTAGGATGTTTACCCAA+AGG | - | chr4.3:27729752-27729771 | None:intergenic | 35.0% | |
| TCAATATCAAAGACACGAGT+AGG | - | chr4.3:27730312-27730331 | None:intergenic | 35.0% | |
| TCATCATAACTATATGCCTC+AGG | - | chr4.3:27731680-27731699 | None:intergenic | 35.0% | |
| TCTTCATTGATGTGAATGTC+TGG | - | chr4.3:27730237-27730256 | None:intergenic | 35.0% | |
| TTAATGTTGGGTTTATTCGG+AGG | + | chr4.3:27730049-27730068 | MS.gene006911:intron | 35.0% | |
| TTGACTGCAAACTGTAGTAT+GGG | + | chr4.3:27731030-27731049 | MS.gene006911:intron | 35.0% | |
| TTGCTATAAAGCTCGTAACT+AGG | - | chr4.3:27729767-27729786 | None:intergenic | 35.0% | |
| TTGGAAAAATAGAAAGTGGG+GGG | + | chr4.3:27730947-27730966 | MS.gene006911:intron | 35.0% | |
| TTGTTTATGCTGAATGTAGG+GGG | + | chr4.3:27730091-27730110 | MS.gene006911:intron | 35.0% | |
| TTTGACACTTGAGGAGAAAA+AGG | + | chr4.3:27730269-27730288 | MS.gene006911:CDS | 35.0% | |
| TTTGACTGCAAACTGTAGTA+TGG | + | chr4.3:27731029-27731048 | MS.gene006911:intron | 35.0% | |
| ! | ACTGATTTCACATGTAATGC+TGG | + | chr4.3:27730397-27730416 | MS.gene006911:intron | 35.0% |
| ! | CATTGTTACTTGACCACTTA+AGG | + | chr4.3:27731600-27731619 | MS.gene006911:intron | 35.0% |
| ! | GGCATATAGTTATGATGATG+AGG | + | chr4.3:27731682-27731701 | MS.gene006911:CDS | 35.0% |
| ! | GTTTTCAAATGTGACATGCA+TGG | + | chr4.3:27729531-27729550 | MS.gene006911:intron | 35.0% |
| ! | TATTCGCTTCCTAAGGATTT+TGG | + | chr4.3:27730361-27730380 | MS.gene006911:intron | 35.0% |
| ! | TCCATTTTCATTGATGCTGA+GGG | + | chr4.3:27730022-27730041 | MS.gene006911:intron | 35.0% |
| ! | TTCCATTTTCATTGATGCTG+AGG | + | chr4.3:27730021-27730040 | MS.gene006911:intron | 35.0% |
| !! | CACAAGATAAAAGTACCTAG+TGG | - | chr4.3:27731486-27731505 | None:intergenic | 35.0% |
| !!! | AGAGAGTTTTGGAAATAAGC+TGG | + | chr4.3:27729372-27729391 | MS.gene006911:intron | 35.0% |
| AACATTCCATGGCCAAAGTT+TGG | + | chr4.3:27731062-27731081 | MS.gene006911:intron | 40.0% | |
| AATAAGCTGGAAACAGCTTG+TGG | + | chr4.3:27729385-27729404 | MS.gene006911:intron | 40.0% | |
| AATGGAGTCTTTGACACTTG+AGG | + | chr4.3:27730260-27730279 | MS.gene006911:CDS | 40.0% | |
| ACAAGTCAAACAGAACCTAG+TGG | - | chr4.3:27731539-27731558 | None:intergenic | 40.0% | |
| ACTTGAGGAGAAAAAGGAGT+GGG | + | chr4.3:27730275-27730294 | MS.gene006911:CDS | 40.0% | |
| AGCAATCACAAATAGAGGCA+TGG | + | chr4.3:27730799-27730818 | MS.gene006911:intron | 40.0% | |
| ATCATTGTGAAGTTGAGGAG+AGG | + | chr4.3:27730117-27730136 | MS.gene006911:CDS | 40.0% | |
| ATGAAAGTAACAGTTGCTGC+TGG | - | chr4.3:27730207-27730226 | None:intergenic | 40.0% | |
| ATGCTACAAGCACTTCCAAA+GGG | - | chr4.3:27729273-27729292 | None:intergenic | 40.0% | |
| CCACTCTACTTCAACTCAAA+AGG | - | chr4.3:27730633-27730652 | None:intergenic | 40.0% | |
| CTACCATGAAAAGATACGCT+GGG | + | chr4.3:27729872-27729891 | MS.gene006911:intron | 40.0% | |
| CTGCTGAAGCAATGCTTATA+AGG | + | chr4.3:27731324-27731343 | MS.gene006911:intron | 40.0% | |
| CTTCTGTTGAATCTGATGGA+AGG | + | chr4.3:27729112-27729131 | MS.gene006911:CDS | 40.0% | |
| GACGTTGGATGTTAGTAGTA+AGG | + | chr4.3:27729035-27729054 | MS.gene006911:CDS | 40.0% | |
| GATCAAGAAAGCAGAAGCAA+TGG | + | chr4.3:27731706-27731725 | MS.gene006911:CDS | 40.0% | |
| GATGCTTCTGTTGAATCTGA+TGG | + | chr4.3:27729108-27729127 | MS.gene006911:CDS | 40.0% | |
| GGTAAACAACCATCATAAGC+AGG | - | chr4.3:27731261-27731280 | None:intergenic | 40.0% | |
| GTGATTGTGTGTATGGGTTT+AGG | + | chr4.3:27729204-27729223 | MS.gene006911:intron | 40.0% | |
| GTTGAATCTGATGGAAGGTT+CGG | + | chr4.3:27729117-27729136 | MS.gene006911:intron | 40.0% | |
| TACCAAGCTAAGCATTTCTG+AGG | - | chr4.3:27729436-27729455 | None:intergenic | 40.0% | |
| TATGCTACAAGCACTTCCAA+AGG | - | chr4.3:27729274-27729293 | None:intergenic | 40.0% | |
| TCCCTCAGCATCAATGAAAA+TGG | - | chr4.3:27730026-27730045 | None:intergenic | 40.0% | |
| TGAAATTCTCAAGCAGAAGC+TGG | + | chr4.3:27731832-27731851 | MS.gene006911:CDS | 40.0% | |
| TGTGCCTAACCAAAATCCTT+AGG | - | chr4.3:27730373-27730392 | None:intergenic | 40.0% | |
| TTACTAACCAGGCACTACAA+CGG | - | chr4.3:27731109-27731128 | None:intergenic | 40.0% | |
| TTCGATTTCAACAAGGTCGA+TGG | - | chr4.3:27728836-27728855 | None:intergenic | 40.0% | |
| TTGTAGGATCTTTGGGTGAA+CGG | + | chr4.3:27729597-27729616 | MS.gene006911:intron | 40.0% | |
| ! | GAAGCTATCGTAGAGAGTTT+TGG | + | chr4.3:27729361-27729380 | MS.gene006911:intron | 40.0% |
| ! | GATGATCAATTTGGTGAGCT+GGG | + | chr4.3:27731890-27731909 | MS.gene006911:CDS | 40.0% |
| ! | GTGTGTATGGGTTTAGGTTT+AGG | + | chr4.3:27729210-27729229 | MS.gene006911:intron | 40.0% |
| ! | TCACAAATAGAGGCATGGAA+CGG | + | chr4.3:27730804-27730823 | MS.gene006911:intron | 40.0% |
| ! | TGATGATCAATTTGGTGAGC+TGG | + | chr4.3:27731889-27731908 | MS.gene006911:CDS | 40.0% |
| ! | TGTAGTCGTCTTTGAGTTCA+CGG | - | chr4.3:27728732-27728751 | None:intergenic | 40.0% |
| !! | GCAGTTATTTCTATAAGCCC+AGG | - | chr4.3:27731737-27731756 | None:intergenic | 40.0% |
| !! | GCTGAGGGAGTTTTAATGTT+GGG | + | chr4.3:27730037-27730056 | MS.gene006911:intron | 40.0% |
| !! | TGCTGAGGGAGTTTTAATGT+TGG | + | chr4.3:27730036-27730055 | MS.gene006911:intron | 40.0% |
| !! | TGTTGGGGATTTGCTATACT+TGG | + | chr4.3:27731149-27731168 | MS.gene006911:intron | 40.0% |
| !!! | CAGTTTTGTTTTAGGCCCTT+TGG | + | chr4.3:27729255-27729274 | MS.gene006911:intron | 40.0% |
| !!! | CCTTTTGAGTTGAAGTAGAG+TGG | + | chr4.3:27730630-27730649 | MS.gene006911:intron | 40.0% |
| !!! | GCTTCCTAAGGATTTTGGTT+AGG | + | chr4.3:27730366-27730385 | MS.gene006911:intron | 40.0% |
| AGCCTCAGAAATGCTTAGCT+TGG | + | chr4.3:27729431-27729450 | MS.gene006911:intron | 45.0% | |
| ATGCGTATAACAAGGCCCTT+TGG | + | chr4.3:27729733-27729752 | MS.gene006911:intron | 45.0% | |
| CACTTGAGGAGAAAAAGGAG+TGG | + | chr4.3:27730274-27730293 | MS.gene006911:CDS | 45.0% | |
| CCATCATTGACCACAGAAAG+AGG | - | chr4.3:27730679-27730698 | None:intergenic | 45.0% | |
| CCTCTTTCTGTGGTCAATGA+TGG | + | chr4.3:27730676-27730695 | MS.gene006911:intron | 45.0% | |
| GAACAAGGGCCTGTTTGTAT+TGG | - | chr4.3:27729475-27729494 | None:intergenic | 45.0% | |
| GATGAACTCGTCGTTCAGAA+CGG | - | chr4.3:27728869-27728888 | None:intergenic | 45.0% | |
| GCATTGCTTCAGCAGAAATG+AGG | - | chr4.3:27731319-27731338 | None:intergenic | 45.0% | |
| GCTACCATGAAAAGATACGC+TGG | + | chr4.3:27729871-27729890 | MS.gene006911:intron | 45.0% | |
| GGCATGACTCAAACATTCCA+TGG | + | chr4.3:27731051-27731070 | MS.gene006911:intron | 45.0% | |
| GGCCCATAAAACACTACATC+AGG | + | chr4.3:27730829-27730848 | MS.gene006911:intron | 45.0% | |
| TATTGATCCTGTCACACAGC+AGG | + | chr4.3:27730326-27730345 | MS.gene006911:CDS | 45.0% | |
| TCGGTAAGGATCATGCCAAA+TGG | + | chr4.3:27730178-27730197 | MS.gene006911:CDS | 45.0% | |
| TGCGTATAACAAGGCCCTTT+GGG | + | chr4.3:27729734-27729753 | MS.gene006911:intron | 45.0% | |
| TGGTGACCACTACCAAACTT+TGG | - | chr4.3:27731077-27731096 | None:intergenic | 45.0% | |
| TGTGAGGCTATCTGAAGACA+CGG | + | chr4.3:27731859-27731878 | MS.gene006911:CDS | 45.0% | |
| TTGAGATGCTTTGACTGCTC+CGG | - | chr4.3:27731795-27731814 | None:intergenic | 45.0% | |
| ! | AAGATACGCTGGGAAGTGTA+TGG | + | chr4.3:27729882-27729901 | MS.gene006911:intron | 45.0% |
| ! | ACAGGCCCTTGTTCTCATTT+TGG | + | chr4.3:27729481-27729500 | MS.gene006911:intron | 45.0% |
| ! | ATTCCTGCAGATGATGATGC+TGG | - | chr4.3:27731288-27731307 | None:intergenic | 45.0% |
| ! | CACAAATAGAGGCATGGAAC+GGG | + | chr4.3:27730805-27730824 | MS.gene006911:intron | 45.0% |
| ! | CTTCCCAGCGTATCTTTTCA+TGG | - | chr4.3:27729878-27729897 | None:intergenic | 45.0% |
| ! | TGTGATGCTTGTGATGGTGA+TGG | + | chr4.3:27728955-27728974 | MS.gene006911:CDS | 45.0% |
| !! | ACTACATCAGGATAGTGGGA+TGG | + | chr4.3:27730841-27730860 | MS.gene006911:intron | 45.0% |
| !! | GTGTATAACGGATCAGACGT+TGG | + | chr4.3:27729020-27729039 | MS.gene006911:CDS | 45.0% |
| !!! | GACATGCATGGGTTTTGTTC+TGG | + | chr4.3:27729543-27729562 | MS.gene006911:intron | 45.0% |
| ACTGAGAGCGATTGCTAGGA+AGG | + | chr4.3:27730152-27730171 | MS.gene006911:CDS | 50.0% | |
| AGGAACATCCACCGGAGTAA+CGG | - | chr4.3:27729082-27729101 | None:intergenic | 50.0% | |
| AGGTGCTTGTCCTCTTTCTG+TGG | + | chr4.3:27730666-27730685 | MS.gene006911:intron | 50.0% | |
| AGTTGCTGCTGGTGACCATT+TGG | - | chr4.3:27730196-27730215 | None:intergenic | 50.0% | |
| ATAGAAAGTGGGGGGCAAAG+TGG | + | chr4.3:27730955-27730974 | MS.gene006911:intron | 50.0% | |
| CACCGGAGTAACGGTATGAT+CGG | - | chr4.3:27729073-27729092 | None:intergenic | 50.0% | |
| CAGAAGCAATGGGAAAGCCT+GGG | + | chr4.3:27731717-27731736 | MS.gene006911:CDS | 50.0% | |
| CCACTACCAAACTTTGGCCA+TGG | - | chr4.3:27731071-27731090 | None:intergenic | 50.0% | |
| CCATGGCCAAAGTTTGGTAG+TGG | + | chr4.3:27731068-27731087 | MS.gene006911:intron | 50.0% | |
| CGTGACTGTGATGCTTGTGA+TGG | + | chr4.3:27728949-27728968 | MS.gene006911:CDS | 50.0% | |
| CTCCGATCATACCGTTACTC+CGG | + | chr4.3:27729068-27729087 | MS.gene006911:CDS | 50.0% | |
| CTGAGAGCGATTGCTAGGAA+GGG | + | chr4.3:27730153-27730172 | MS.gene006911:CDS | 50.0% | |
| GAGTTCATCGCTCACAGACT+CGG | + | chr4.3:27728880-27728899 | MS.gene006911:CDS | 50.0% | |
| TAGAAAGTGGGGGGCAAAGT+GGG | + | chr4.3:27730956-27730975 | MS.gene006911:intron | 50.0% | |
| TGAGACTGAGAGCGATTGCT+AGG | + | chr4.3:27730148-27730167 | MS.gene006911:CDS | 50.0% | |
| TGAGAGCGATTGCTAGGAAG+GGG | + | chr4.3:27730154-27730173 | MS.gene006911:CDS | 50.0% | |
| TGAGGAGAAAAAGGAGTGGG+TGG | + | chr4.3:27730278-27730297 | MS.gene006911:CDS | 50.0% | |
| TGTCCAGCATCATCATCTGC+AGG | + | chr4.3:27731282-27731301 | MS.gene006911:intron | 50.0% | |
| TGTGAAGTTGAGGAGAGGTC+AGG | + | chr4.3:27730122-27730141 | MS.gene006911:CDS | 50.0% | |
| TTCAACAAGGTCGATGGCGA+TGG | - | chr4.3:27728830-27728849 | None:intergenic | 50.0% | |
| ! | AAATAGAGGCATGGAACGGG+TGG | + | chr4.3:27730808-27730827 | MS.gene006911:intron | 50.0% |
| ! | AGTTCACGGATTTTCACGCG+CGG | - | chr4.3:27728718-27728737 | None:intergenic | 50.0% |
| ! | GCAGATGATGATGCTGGACA+TGG | - | chr4.3:27731282-27731301 | None:intergenic | 50.0% |
| !! | TCAACAGAAGCATCACCACC+AGG | - | chr4.3:27729102-27729121 | None:intergenic | 50.0% |
| ACAAGGTCGATGGCGATGGT+TGG | - | chr4.3:27728826-27728845 | None:intergenic | 55.0% | |
| ACTCACAAGCGAACGTGCCA+TGG | + | chr4.3:27728912-27728931 | MS.gene006911:CDS | 55.0% | |
| AGCAGAAGCTGGATGCTGTG+AGG | + | chr4.3:27731843-27731862 | MS.gene006911:CDS | 55.0% | |
| AGGCAAACCTGCTGTGTGAC+AGG | - | chr4.3:27730336-27730355 | None:intergenic | 55.0% | |
| ATGGCACGTTCGCTTGTGAG+TGG | - | chr4.3:27728913-27728932 | None:intergenic | 55.0% | |
| CAAGGTCGATGGCGATGGTT+GGG | - | chr4.3:27728825-27728844 | None:intergenic | 55.0% | |
| CGATCATACCGTTACTCCGG+TGG | + | chr4.3:27729071-27729090 | MS.gene006911:CDS | 55.0% | |
| CTTCGGAAATCATCACGCGC+CGG | - | chr4.3:27728801-27728820 | None:intergenic | 55.0% | |
| GATGGCGATGGTTGGGACTT+CGG | - | chr4.3:27728818-27728837 | None:intergenic | 55.0% | |
| GCAGAAGCAATGGGAAAGCC+TGG | + | chr4.3:27731716-27731735 | MS.gene006911:CDS | 55.0% | |
| GCGATTGCTAGGAAGGGGAT+CGG | + | chr4.3:27730159-27730178 | MS.gene006911:CDS | 55.0% | |
| GTTACTCCGGTGGATGTTCC+TGG | + | chr4.3:27729081-27729100 | MS.gene006911:CDS | 55.0% | |
| TCACCACCAGGAACATCCAC+CGG | - | chr4.3:27729090-27729109 | None:intergenic | 55.0% | |
| TGCTAAGTCGGTCAGCCACT+AGG | + | chr4.3:27731521-27731540 | MS.gene006911:intron | 55.0% | |
| TGCTAGGAAGGGGATCGGTA+AGG | + | chr4.3:27730164-27730183 | MS.gene006911:CDS | 55.0% | |
| ! | ACAGTCACGTGAGAAGCGCA+TGG | - | chr4.3:27728938-27728957 | None:intergenic | 55.0% |
| ! | CAGGCACTACAACGGTGTTG+CGG | - | chr4.3:27731101-27731120 | None:intergenic | 55.0% |
| ACTCCGGTGGATGTTCCTGG+TGG | + | chr4.3:27729084-27729103 | MS.gene006911:CDS | 60.0% | |
| CGCAACACCGTTGTAGTGCC+TGG | + | chr4.3:27731099-27731118 | MS.gene006911:intron | 60.0% | |
| CTGGGTGCACATATGCGAGG+AGG | + | chr4.3:27731908-27731927 | MS.gene006911:CDS | 60.0% | |
| GAGCTGGGTGCACATATGCG+AGG | + | chr4.3:27731905-27731924 | MS.gene006911:CDS | 60.0% | |
| ! | ACGTGAGAAGCGCATGGCCA+TGG | - | chr4.3:27728932-27728951 | None:intergenic | 60.0% |
| ! | GGTGGTGGTAGTTGACCCTG+AGG | + | chr4.3:27731661-27731680 | MS.gene006911:intron | 60.0% |
| !! | CACTACAACGGTGTTGCGGC+TGG | - | chr4.3:27731097-27731116 | None:intergenic | 60.0% |
| CATCACGCGCCGGAGCGCGT+TGG | - | chr4.3:27728791-27728810 | None:intergenic | 75.0% | |
| CCAGCGTCGCCAACGCGCTC+CGG | + | chr4.3:27728779-27728798 | MS.gene006911:CDS | 75.0% | |
| ! | CGCGTTGGCGACGCTGGCGT+CGG | - | chr4.3:27728776-27728795 | None:intergenic | 75.0% |
| !! | CCGGAGCGCGTTGGCGACGC+TGG | - | chr4.3:27728782-27728801 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 27728688 | 27731934 | 27728688 | ID=MS.gene006911 |
| chr4.3 | mRNA | 27728688 | 27731934 | 27728688 | ID=MS.gene006911.t1;Parent=MS.gene006911 |
| chr4.3 | exon | 27728688 | 27729133 | 27728688 | ID=MS.gene006911.t1.exon1;Parent=MS.gene006911.t1 |
| chr4.3 | CDS | 27728688 | 27729133 | 27728688 | ID=cds.MS.gene006911.t1;Parent=MS.gene006911.t1 |
| chr4.3 | exon | 27730110 | 27730347 | 27730110 | ID=MS.gene006911.t1.exon2;Parent=MS.gene006911.t1 |
| chr4.3 | CDS | 27730110 | 27730347 | 27730110 | ID=cds.MS.gene006911.t1;Parent=MS.gene006911.t1 |
| chr4.3 | exon | 27731662 | 27731934 | 27731662 | ID=MS.gene006911.t1.exon3;Parent=MS.gene006911.t1 |
| chr4.3 | CDS | 27731662 | 27731934 | 27731662 | ID=cds.MS.gene006911.t1;Parent=MS.gene006911.t1 |
| Gene Sequence |
| Protein sequence |
