AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84578


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84578.t1 MTR_7g066240 100.000 51 0 0 1 51 1 51 9.17e-33 106
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84578.t1 AT5G41010 88.235 51 6 0 1 51 1 51 1.24e-29 98.6
MS.gene84578.t1 AT1G53690 73.171 41 10 1 2 41 10 50 3.67e-15 62.4
MS.gene84578.t1 AT1G53690 73.171 41 10 1 2 41 10 50 3.67e-15 62.4

Find 12 sgRNAs with CRISPR-Local

Find 11 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTAACGTGCTTCATAC+TGG 0.389614 7.3:-39812566 None:intergenic
AATAACGTCACCAGACTTCA+AGG 0.430291 7.3:-39812487 None:intergenic
GACGAGTGCGCTTCTTGTAA+AGG 0.448256 7.3:-39812536 None:intergenic
GTCGAGAATACCTTGAAGTC+TGG 0.475492 7.3:+39812477 MS.gene84578:CDS
CAGAGGTAACTCACAGGCTC+AGG 0.525994 7.3:-39812441 None:intergenic
AGTTACCTCTGTGGTGATTG+TGG 0.528859 7.3:+39812453 MS.gene84578:CDS
TAACTCACAGGCTCAGGCAG+AGG 0.539104 7.3:-39812435 None:intergenic
GGATTCTGTAACCACAGTCA+CGG 0.652403 7.3:-39812515 None:intergenic
GTTATTCAGTGCCGTGACTG+TGG 0.657037 7.3:+39812504 MS.gene84578:CDS
TCACCACAGAGGTAACTCAC+AGG 0.674710 7.3:-39812447 None:intergenic
GAGCCTGTGAGTTACCTCTG+TGG 0.764675 7.3:+39812444 MS.gene84578:CDS
CGACTCCACAATCACCACAG+AGG 0.769265 7.3:-39812458 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AATAACGTCACCAGACTTCA+AGG - chr7.3:39812490-39812509 None:intergenic 40.0%
AGTTACCTCTGTGGTGATTG+TGG + chr7.3:39812453-39812472 MS.gene84578:CDS 45.0%
GGATTCTGTAACCACAGTCA+CGG - chr7.3:39812518-39812537 None:intergenic 45.0%
GTCGAGAATACCTTGAAGTC+TGG + chr7.3:39812477-39812496 MS.gene84578:CDS 45.0%
GACGAGTGCGCTTCTTGTAA+AGG - chr7.3:39812539-39812558 None:intergenic 50.0%
GTTATTCAGTGCCGTGACTG+TGG + chr7.3:39812504-39812523 MS.gene84578:CDS 50.0%
TCACCACAGAGGTAACTCAC+AGG - chr7.3:39812450-39812469 None:intergenic 50.0%
CAGAGGTAACTCACAGGCTC+AGG - chr7.3:39812444-39812463 None:intergenic 55.0%
CGACTCCACAATCACCACAG+AGG - chr7.3:39812461-39812480 None:intergenic 55.0%
GAGCCTGTGAGTTACCTCTG+TGG + chr7.3:39812444-39812463 MS.gene84578:CDS 55.0%
TAACTCACAGGCTCAGGCAG+AGG - chr7.3:39812438-39812457 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 39812429 39812584 39812429 ID=MS.gene84578
chr7.3 mRNA 39812429 39812584 39812429 ID=MS.gene84578.t1;Parent=MS.gene84578
chr7.3 exon 39812429 39812584 39812429 ID=MS.gene84578.t1.exon1;Parent=MS.gene84578.t1
chr7.3 CDS 39812429 39812584 39812429 ID=cds.MS.gene84578.t1;Parent=MS.gene84578.t1
Gene Sequence

>MS.gene84578

ATGGATCCTCTGCCTGAGCCTGTGAGTTACCTCTGTGGTGATTGTGGAGTCGAGAATACCTTGAAGTCTGGTGACGTTATTCAGTGCCGTGACTGTGGTTACAGAATCCTTTACAAGAAGCGCACTCGTCGCATTGTCCAGTATGAAGCACGTTAA

Protein sequence

>MS.gene84578.t1

MDPLPEPVSYLCGDCGVENTLKSGDVIQCRDCGYRILYKKRTRRIVQYEAR