Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84578.t1 | XP_013449057.1 | 100 | 51 | 0 | 0 | 1 | 51 | 1 | 51 | 4.60E-22 | 112.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84578.t1 | Q9FLM8 | 88.2 | 51 | 6 | 0 | 1 | 51 | 1 | 51 | 3.9e-22 | 104.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84578.t1 | I3SLU4 | 100.0 | 51 | 0 | 0 | 1 | 51 | 1 | 51 | 3.3e-22 | 112.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene84578 | MS.gene064140 | PPI |
| MS.gene84578 | MS.gene030166 | PPI |
| MS.gene84578 | MS.gene24295 | PPI |
| MS.gene84578 | MS.gene26950 | PPI |
| MS.gene84578 | MS.gene27025 | PPI |
| MS.gene84578 | MS.gene051008 | PPI |
| MS.gene84578 | MS.gene81051 | PPI |
| MS.gene84578 | MS.gene27326 | PPI |
| MS.gene84578 | MS.gene006911 | PPI |
| MS.gene84578 | MS.gene90747 | PPI |
| MS.gene84578 | MS.gene26777 | PPI |
| MS.gene84578 | MS.gene047813 | PPI |
| MS.gene84578 | MS.gene56067 | PPI |
| MS.gene84578 | MS.gene070299 | PPI |
| MS.gene84578 | MS.gene39636 | PPI |
| MS.gene84578 | MS.gene08465 | PPI |
| MS.gene84578 | MS.gene05688 | PPI |
| MS.gene84578 | MS.gene053492 | PPI |
| MS.gene84578 | MS.gene26516 | PPI |
| MS.gene84578 | MS.gene04335 | PPI |
| MS.gene84578 | MS.gene24205 | PPI |
| MS.gene84578 | MS.gene04160 | PPI |
| MS.gene84578 | MS.gene68633 | PPI |
| MS.gene84578 | MS.gene56414 | PPI |
| MS.gene84578 | MS.gene27287 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84578.t1 | MTR_7g066240 | 100.000 | 51 | 0 | 0 | 1 | 51 | 1 | 51 | 9.17e-33 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84578.t1 | AT5G41010 | 88.235 | 51 | 6 | 0 | 1 | 51 | 1 | 51 | 1.24e-29 | 98.6 |
| MS.gene84578.t1 | AT1G53690 | 73.171 | 41 | 10 | 1 | 2 | 41 | 10 | 50 | 3.67e-15 | 62.4 |
| MS.gene84578.t1 | AT1G53690 | 73.171 | 41 | 10 | 1 | 2 | 41 | 10 | 50 | 3.67e-15 | 62.4 |
Find 12 sgRNAs with CRISPR-Local
Find 11 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTAACGTGCTTCATAC+TGG | 0.389614 | 7.3:-39812566 | None:intergenic |
| AATAACGTCACCAGACTTCA+AGG | 0.430291 | 7.3:-39812487 | None:intergenic |
| GACGAGTGCGCTTCTTGTAA+AGG | 0.448256 | 7.3:-39812536 | None:intergenic |
| GTCGAGAATACCTTGAAGTC+TGG | 0.475492 | 7.3:+39812477 | MS.gene84578:CDS |
| CAGAGGTAACTCACAGGCTC+AGG | 0.525994 | 7.3:-39812441 | None:intergenic |
| AGTTACCTCTGTGGTGATTG+TGG | 0.528859 | 7.3:+39812453 | MS.gene84578:CDS |
| TAACTCACAGGCTCAGGCAG+AGG | 0.539104 | 7.3:-39812435 | None:intergenic |
| GGATTCTGTAACCACAGTCA+CGG | 0.652403 | 7.3:-39812515 | None:intergenic |
| GTTATTCAGTGCCGTGACTG+TGG | 0.657037 | 7.3:+39812504 | MS.gene84578:CDS |
| TCACCACAGAGGTAACTCAC+AGG | 0.674710 | 7.3:-39812447 | None:intergenic |
| GAGCCTGTGAGTTACCTCTG+TGG | 0.764675 | 7.3:+39812444 | MS.gene84578:CDS |
| CGACTCCACAATCACCACAG+AGG | 0.769265 | 7.3:-39812458 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AATAACGTCACCAGACTTCA+AGG | - | chr7.3:39812490-39812509 | None:intergenic | 40.0% | |
| AGTTACCTCTGTGGTGATTG+TGG | + | chr7.3:39812453-39812472 | MS.gene84578:CDS | 45.0% | |
| GGATTCTGTAACCACAGTCA+CGG | - | chr7.3:39812518-39812537 | None:intergenic | 45.0% | |
| GTCGAGAATACCTTGAAGTC+TGG | + | chr7.3:39812477-39812496 | MS.gene84578:CDS | 45.0% | |
| GACGAGTGCGCTTCTTGTAA+AGG | - | chr7.3:39812539-39812558 | None:intergenic | 50.0% | |
| GTTATTCAGTGCCGTGACTG+TGG | + | chr7.3:39812504-39812523 | MS.gene84578:CDS | 50.0% | |
| TCACCACAGAGGTAACTCAC+AGG | - | chr7.3:39812450-39812469 | None:intergenic | 50.0% | |
| CAGAGGTAACTCACAGGCTC+AGG | - | chr7.3:39812444-39812463 | None:intergenic | 55.0% | |
| CGACTCCACAATCACCACAG+AGG | - | chr7.3:39812461-39812480 | None:intergenic | 55.0% | |
| GAGCCTGTGAGTTACCTCTG+TGG | + | chr7.3:39812444-39812463 | MS.gene84578:CDS | 55.0% | |
| TAACTCACAGGCTCAGGCAG+AGG | - | chr7.3:39812438-39812457 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 39812429 | 39812584 | 39812429 | ID=MS.gene84578 |
| chr7.3 | mRNA | 39812429 | 39812584 | 39812429 | ID=MS.gene84578.t1;Parent=MS.gene84578 |
| chr7.3 | exon | 39812429 | 39812584 | 39812429 | ID=MS.gene84578.t1.exon1;Parent=MS.gene84578.t1 |
| chr7.3 | CDS | 39812429 | 39812584 | 39812429 | ID=cds.MS.gene84578.t1;Parent=MS.gene84578.t1 |
| Gene Sequence |
| Protein sequence |