Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94781.t1 | XP_013449057.1 | 100 | 51 | 0 | 0 | 1 | 51 | 1 | 51 | 4.60E-22 | 112.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94781.t1 | Q9FLM8 | 88.2 | 51 | 6 | 0 | 1 | 51 | 1 | 51 | 3.9e-22 | 104.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94781.t1 | I3SLU4 | 100.0 | 51 | 0 | 0 | 1 | 51 | 1 | 51 | 3.3e-22 | 112.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene94781 | MS.gene030166 | PPI |
MS.gene94781 | MS.gene68633 | PPI |
MS.gene94781 | MS.gene26950 | PPI |
MS.gene94781 | MS.gene27025 | PPI |
MS.gene94781 | MS.gene81051 | PPI |
MS.gene070299 | MS.gene94781 | PPI |
MS.gene94781 | MS.gene27326 | PPI |
MS.gene94781 | MS.gene24295 | PPI |
MS.gene94781 | MS.gene56067 | PPI |
MS.gene94781 | MS.gene051008 | PPI |
MS.gene94781 | MS.gene39636 | PPI |
MS.gene94781 | MS.gene006911 | PPI |
MS.gene94781 | MS.gene053492 | PPI |
MS.gene94781 | MS.gene90747 | PPI |
MS.gene94781 | MS.gene047813 | PPI |
MS.gene26516 | MS.gene94781 | PPI |
MS.gene94781 | MS.gene04335 | PPI |
MS.gene56414 | MS.gene94781 | PPI |
MS.gene94781 | MS.gene24205 | PPI |
MS.gene94781 | MS.gene04160 | PPI |
MS.gene94781 | MS.gene08465 | PPI |
MS.gene94781 | MS.gene05688 | PPI |
MS.gene94781 | MS.gene27287 | PPI |
MS.gene26777 | MS.gene94781 | PPI |
MS.gene94781 | MS.gene064140 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94781.t1 | MTR_7g066240 | 100.000 | 51 | 0 | 0 | 1 | 51 | 1 | 51 | 9.17e-33 | 106 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94781.t1 | AT5G41010 | 88.235 | 51 | 6 | 0 | 1 | 51 | 1 | 51 | 1.24e-29 | 98.6 |
MS.gene94781.t1 | AT1G53690 | 73.171 | 41 | 10 | 1 | 2 | 41 | 10 | 50 | 3.67e-15 | 62.4 |
MS.gene94781.t1 | AT1G53690 | 73.171 | 41 | 10 | 1 | 2 | 41 | 10 | 50 | 3.67e-15 | 62.4 |
Find 12 sgRNAs with CRISPR-Local
Find 11 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCTTAACGTGCTTCATAC+TGG | 0.389614 | 7.1:-36252977 | None:intergenic |
AATAACGTCGCCAGACTTCA+AGG | 0.419094 | 7.1:-36252898 | None:intergenic |
GACGAGTGCGCTTCTTGTAA+AGG | 0.448256 | 7.1:-36252947 | None:intergenic |
GTCGAGAATACCTTGAAGTC+TGG | 0.470760 | 7.1:+36252888 | MS.gene94781:CDS |
CAGAGGTAACTCACAGGCTC+AGG | 0.525994 | 7.1:-36252852 | None:intergenic |
AGTTACCTCTGTGGTGATTG+TGG | 0.528859 | 7.1:+36252864 | MS.gene94781:CDS |
TAACTCACAGGCTCAGGCAG+AGG | 0.539104 | 7.1:-36252846 | None:intergenic |
GTTATTCAGTGCCGTGACTG+TGG | 0.582901 | 7.1:+36252915 | MS.gene94781:CDS |
GGATTCTGTAACCACAGTCA+CGG | 0.652403 | 7.1:-36252926 | None:intergenic |
TCACCACAGAGGTAACTCAC+AGG | 0.674710 | 7.1:-36252858 | None:intergenic |
GAGCCTGTGAGTTACCTCTG+TGG | 0.764675 | 7.1:+36252855 | MS.gene94781:CDS |
CGACTCCACAATCACCACAG+AGG | 0.769265 | 7.1:-36252869 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
AATAACGTCGCCAGACTTCA+AGG | - | chr7.1:36252901-36252920 | None:intergenic | 45.0% | |
AGTTACCTCTGTGGTGATTG+TGG | + | chr7.1:36252864-36252883 | MS.gene94781:CDS | 45.0% | |
GGATTCTGTAACCACAGTCA+CGG | - | chr7.1:36252929-36252948 | None:intergenic | 45.0% | |
GTCGAGAATACCTTGAAGTC+TGG | + | chr7.1:36252888-36252907 | MS.gene94781:CDS | 45.0% | |
GACGAGTGCGCTTCTTGTAA+AGG | - | chr7.1:36252950-36252969 | None:intergenic | 50.0% | |
GTTATTCAGTGCCGTGACTG+TGG | + | chr7.1:36252915-36252934 | MS.gene94781:CDS | 50.0% | |
TCACCACAGAGGTAACTCAC+AGG | - | chr7.1:36252861-36252880 | None:intergenic | 50.0% | |
CAGAGGTAACTCACAGGCTC+AGG | - | chr7.1:36252855-36252874 | None:intergenic | 55.0% | |
CGACTCCACAATCACCACAG+AGG | - | chr7.1:36252872-36252891 | None:intergenic | 55.0% | |
GAGCCTGTGAGTTACCTCTG+TGG | + | chr7.1:36252855-36252874 | MS.gene94781:CDS | 55.0% | |
TAACTCACAGGCTCAGGCAG+AGG | - | chr7.1:36252849-36252868 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 36252840 | 36252995 | 36252840 | ID=MS.gene94781 |
chr7.1 | mRNA | 36252840 | 36252995 | 36252840 | ID=MS.gene94781.t1;Parent=MS.gene94781 |
chr7.1 | exon | 36252840 | 36252995 | 36252840 | ID=MS.gene94781.t1.exon1;Parent=MS.gene94781.t1 |
chr7.1 | CDS | 36252840 | 36252995 | 36252840 | ID=cds.MS.gene94781.t1;Parent=MS.gene94781.t1 |
Gene Sequence |
Protein sequence |